Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 304 of 349
Found at i:101720211 original size:16 final size:16
Alignment explanation
Indices: 101720190--101720240 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
101720180 ATTACAATAT
101720190 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
101720206 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
101720225 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
101720241 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:101720223 original size:19 final size:21
Alignment explanation
Indices: 101720171--101720230 Score: 79
Period size: 19 Copynumber: 2.9 Consensus size: 21
101720161 TACAAATTAA
* *
101720171 ATCTCCAAGATTACAATATCAT
1 ATCTTCAAGATTGC-ATATCAT
101720193 ATCTTCAAGATTGCATATCAT
1 ATCTTCAAGATTGCATATCAT
101720214 ATC-T-AAGATTGCATATC
1 ATCTTCAAGATTGCATATC
101720231 CTTAAAGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 13 0.36
20 1 0.03
21 10 0.28
22 12 0.33
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (21 bp):
ATCTTCAAGATTGCATATCAT
Found at i:101722948 original size:26 final size:27
Alignment explanation
Indices: 101722931--101723024 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
101722921 AATAATTTTC
101722931 AAAA-TTCAAAATTTAAAATATTTATA
1 AAAATTTCAAAATTTAAAATATTTATA
* * *
101722957 AAAATTTTAAAATTT-ATATTTTTA-A
1 AAAATTTCAAAATTTAAAATATTTATA
* * *
101722982 AAAATTTAAAAATTCTAAAAAATATATAA
1 AAAATTTCAAAATT-TAAAATATTTAT-A
101723011 AAAATTT-AAAATTT
1 AAAATTTCAAAATTT
101723025 TAGAATTATT
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
25 14 0.25
26 12 0.22
27 15 0.27
28 6 0.11
29 8 0.15
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
AAAATTTCAAAATTTAAAATATTTATA
Found at i:101722953 original size:9 final size:9
Alignment explanation
Indices: 101722941--101723042 Score: 50
Period size: 9 Copynumber: 11.1 Consensus size: 9
101722931 AAAATTCAAA
101722941 ATTTAAAAT
1 ATTTAAAAT
*
101722950 ATTTATAAAA
1 ATTTA-AAAT
*
101722960 ATTTTAAA-
1 ATTTAAAAT
*
101722968 ATTT-ATAT
1 ATTTAAAAT
* *
101722976 TTTTAAAAA
1 ATTTAAAAT
101722985 ATTTAAAA-
1 ATTTAAAAT
101722993 ATTCTAAAAAAT
1 ATT-T--AAAAT
* *
101723005 ATATAAAAA
1 ATTTAAAAT
101723014 ATTTAAAAT
1 ATTTAAAAT
*
101723023 -TTTAGAATT
1 ATTTA-AAAT
101723032 ATTCTAAAAT
1 ATT-TAAAAT
101723042 A
1 A
101723043 ATAATTTTGA
Statistics
Matches: 70, Mismatches: 13, Indels: 19
0.69 0.13 0.19
Matches are distributed among these distances:
7 2 0.03
8 14 0.20
9 32 0.46
10 13 0.19
11 7 0.10
12 2 0.03
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (9 bp):
ATTTAAAAT
Found at i:101722971 original size:18 final size:19
Alignment explanation
Indices: 101722938--101723026 Score: 64
Period size: 19 Copynumber: 4.9 Consensus size: 19
101722928 TTCAAAATTC
101722938 AAAATTTAAAATATTTATA
1 AAAATTTAAAATATTTATA
*
101722957 AAAATTTTAAA-ATTTAT-
1 AAAATTTAAAATATTTATA
** *
101722974 -ATTTTTAAAA-AATT-TA
1 AAAATTTAAAATATTTATA
* *
101722990 AAAATTCTAAAAAATATATAA
1 AAAATT-TAAAATATTTAT-A
101723011 AAAATTTAAAAT-TTTA
1 AAAATTTAAAATATTTA
101723027 GAATTATTCT
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
15 1 0.02
16 10 0.19
17 3 0.06
18 11 0.21
19 15 0.28
20 6 0.11
21 7 0.13
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTTAAAATATTTATA
Found at i:101725381 original size:18 final size:20
Alignment explanation
Indices: 101725345--101725391 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
101725335 AGTTGTAAGT
101725345 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
101725365 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
101725384 ATGATATA
1 AT-ATATA
101725392 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:101726104 original size:16 final size:16
Alignment explanation
Indices: 101726083--101726114 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
101726073 AGAATGGAGT
101726083 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
101726099 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
101726115 TAAAACAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:101727223 original size:17 final size:19
Alignment explanation
Indices: 101727201--101727244 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
101727191 ACAATAATAT
101727201 AAAATA-AT-GATATGTAC
1 AAAATATATAGATATGTAC
*
101727218 AAAATATATATATATGTAC
1 AAAATATATAGATATGTAC
*
101727237 ATAATATA
1 AAAATATA
101727245 GTTATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 2 0.09
19 15 0.65
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (19 bp):
AAAATATATAGATATGTAC
Found at i:101728336 original size:30 final size:30
Alignment explanation
Indices: 101728281--101728395 Score: 126
Period size: 30 Copynumber: 3.9 Consensus size: 30
101728271 GTAATTTTTA
* * *
101728281 GAAAATTTA-GGGTTAAAATGCAATTTAAG
1 GAAAGTTTAGGGGTCAAAATGAAATTTAAG
** * *
101728310 GAAAGTTTAGGGGTTTAAGTGAAATTTAAA
1 GAAAGTTTAGGGGTCAAAATGAAATTTAAG
*
101728340 GAAAGTTTAAGGGTCAAAATGAAATTTAAG
1 GAAAGTTTAGGGGTCAAAATGAAATTTAAG
* *
101728370 AAAAGTTTAGGGGT-AAAATGCAATTT
1 GAAAGTTTAGGGGTCAAAATGAAATTT
101728396 TATTTTTTGA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
29 19 0.26
30 53 0.74
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (30 bp):
GAAAGTTTAGGGGTCAAAATGAAATTTAAG
Found at i:101728851 original size:78 final size:76
Alignment explanation
Indices: 101728623--101728884 Score: 296
Period size: 75 Copynumber: 3.4 Consensus size: 76
101728613 GACCTGAAGT
* * *
101728623 TCAACTCACCTCTCG-AATTATGAGTTGATCTTTTGAAAAAGCAAAA-AATTGAAAATACCTCAG
1 TCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTTAAAAA-AAAAAGAATTGAAAATACCTCAG
**
101728686 CGTGAGCTGAGGC
64 CGTGTCCTGAGGC
* * * * * **
101728699 TTAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGA-AATTGAAAATACCTCAATG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAAAAAGAATTGAAAATACCTCAGCG
*
101728763 TGTCTTGAGGC
66 TGTCCTGAGGC
** *
101728774 TCAACTCATTTCTCGCAATATGAGTTGACTTTTTTTAAAAAAAAAAGGAATTGAAATTACCTCAG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAAAAAAAA-GAATTGAAAATACCTCAG
*
101728839 CGTGTCCCGAGGC
64 CGTGTCCTGAGGC
* *
101728852 TCAACTCACCTCTCGTAATATGAATTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
101728885 GAAAAACATA
Statistics
Matches: 153, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
75 52 0.34
76 45 0.29
77 7 0.05
78 49 0.32
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAAAAAGAATTGAAAATACCTCAGCG
TGTCCTGAGGC
Found at i:101728959 original size:87 final size:87
Alignment explanation
Indices: 101728813--101729220 Score: 529
Period size: 87 Copynumber: 4.7 Consensus size: 87
101728803 TTTTTTTAAA
* * * * *
101728813 AAAAAAAGGAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAATT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATT
101728878 GATTTTTGAAAAACATAAATTG
66 GATTTTTGAAAAACATAAATTG
* * * * * *
101728900 AAAAACGGAAATCGAAAATACCTCAACGTGTCTTGAGGCTCAATTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATT
* *
101728965 GATTTTTGAAAAATATAGATTGG
66 GATTTTTGAAAAACATAAATT-G
* *
101728988 AAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAAT
*
101729053 TGA--TTT-AAAAACAGT-CATT-
65 TGATTTTTGAAAAACA-TAAATTG
* * *
101729072 AAGAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATT
* *
101729137 GATTTTTGCAAAATATAAATTG
66 GATTTTTGAAAAACATAAATTG
* * * *
101729159 CAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
101729221 GTCGACTTTT
Statistics
Matches: 277, Mismatches: 36, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
83 62 0.22
85 4 0.01
86 17 0.06
87 132 0.48
88 1 0.00
89 61 0.22
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (87 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATT
GATTTTTGAAAAACATAAATTG
Found at i:101729152 original size:172 final size:174
Alignment explanation
Indices: 101728732--101729222 Score: 573
Period size: 172 Copynumber: 2.9 Consensus size: 174
101728722 GTTGATTTTT
* ** * * **
101728732 TTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATCAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
101728797 GTTGACTTTTT------T-TAAA---AAAAAA-AGGAATTGAAATTACCTCAGCGTGTCCCGAGG
66 ATTGA-TTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
* *
101728851 CTCAACTCACCTCTCGTAATATGAATTGATTTTTGAAAAACATAAA
130 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACATAAA
* * * *
101728897 TTGAAAAACGGAAATCGAAAATACCTCAACGTGTCTTGAGGCTCAATTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATCAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
101728962 GTTGATTTTTGAAAAATATAGATTGGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGG
66 ATTGATTTTTGAAAAATATAAATT-GAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
*
101729027 CTCAACTCACCTCTCGCAATATGAGTTGA-TTT-AAAAACAGT-CA
130 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACA-TAAA
* * **
101729070 TT-AAGAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATCAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
101729134 ATTGATTTTTGCAAAATATAAATTG-CAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGC
66 ATTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
*
101729198 TCAACTCACCTTTCGCAATATGAGT
131 TCAACTCACCTCTCGCAATATGAGT
101729223 CGACTTTTTT
Statistics
Matches: 282, Mismatches: 31, Indels: 21
0.84 0.09 0.06
Matches are distributed among these distances:
164 5 0.02
165 63 0.22
170 60 0.21
171 4 0.01
172 75 0.27
173 10 0.04
174 4 0.01
175 6 0.02
176 55 0.20
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (174 bp):
TTGAAAAACAGAAATCAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
ATTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACATAAA
Found at i:101729161 original size:14 final size:14
Alignment explanation
Indices: 101729142--101729172 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
101729132 GAATTGATTT
*
101729142 TTGCAAAATATAAA
1 TTGCAAAACATAAA
101729156 TTGCAAAACATAAA
1 TTGCAAAACATAAA
101729170 TTG
1 TTG
101729173 AAATTACCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.29
Consensus pattern (14 bp):
TTGCAAAACATAAA
Found at i:101729198 original size:259 final size:253
Alignment explanation
Indices: 101728739--101729231 Score: 648
Period size: 259 Copynumber: 1.9 Consensus size: 253
101728729 TTTTTGAAAG
* * * **
101728739 ACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGACT
1 ACAGAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
** * * * *
101728804 TTTTTTAAAAAAAAAAGGAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTA
64 TTTTAAAAAAAAAAAAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
* *
101728869 ATATGAATTGATTTTTGAAAAACATAAATTGAAAAACGGAAATCGAAAATACCTCAACGTGTCTT
129 ATATGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACGTGTCCT
* *
101728934 GAGGCTCAATTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAGATTGGAAAAA
194 GAGGCTCAACTCACCTCTCGCAATATGAGTCGACTTTTTGAAAAATATAGATTGGAAAAA
*
101728993 ACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
1 ACAGAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
101729057 TTAAAAACAGTCATTAAGAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCT
66 TTAAAAA-A---A--AA-AA-AGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCT
* * * * * * *
101729122 CTCGCAATATGAATTGATTTTTGCAAAATATAAATTGCAAAACATAAATTGAAATTACCTCAGCG
123 CTCGCAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACG
*
101729187 TGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTCGACTTTTT
188 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGACTTTTT
101729232 TTTTTGACAA
Statistics
Matches: 204, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
251 6 0.03
252 1 0.00
254 57 0.28
255 1 0.00
257 2 0.01
258 2 0.01
259 130 0.64
260 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (253 bp):
ACAGAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTAAAAAAAAAAAAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACGTGTCCTGA
GGCTCAACTCACCTCTCGCAATATGAGTCGACTTTTTGAAAAATATAGATTGGAAAAA
Found at i:101741451 original size:16 final size:17
Alignment explanation
Indices: 101741421--101741459 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
101741411 ACAATAATAT
101741421 AAAATAATGATATGTAC
1 AAAATAATGATATGTAC
101741438 AAAATAAT-ATATGTAC
1 AAAATAATGATATGTAC
*
101741454 ATAATA
1 AAAATA
101741460 TAGTTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (17 bp):
AAAATAATGATATGTAC
Found at i:101742553 original size:30 final size:30
Alignment explanation
Indices: 101742510--101742611 Score: 107
Period size: 30 Copynumber: 3.4 Consensus size: 30
101742500 TTTTAAGGTT
* *
101742510 AAAATGCAATTTAAGGAAAGTTTAGGGGTT
1 AAAATGAAATTTAAGGAAAGTTTAGGGGTC
** * * *
101742540 TCAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAGGAAAGTTTAGGGGTC
*
101742570 AAAATGAAATTT-AGGAAAAGTTTAGGGGTA
1 AAAATGAAATTTAAGG-AAAGTTTAGGGGTC
*
101742600 AAAATGCAATTT
1 AAAATGAAATTT
101742612 TTATTTTTTG
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 2 0.04
30 55 0.96
ACGTcount: A:0.43, C:0.04, G:0.24, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAGGAAAGTTTAGGGGTC
Found at i:101742611 original size:60 final size:59
Alignment explanation
Indices: 101742495--101742611 Score: 137
Period size: 60 Copynumber: 2.0 Consensus size: 59
101742485 TGTAATTTTT
* * * *** *
101742495 AGAAATTTTAAGGTTAAAATGCAATTTAAGGAAAGTTTAGGGGTTTCAGTGAAATTTAA
1 AGAAAGTTTAAGGTCAAAATGAAATTTAAGGAAAGTTTAGGGGTAAAAATGAAATTTAA
*
101742554 AGAAAGTTTAAGGGTCAAAATGAAATTT-AGGAAAAGTTTAGGGGTAAAAATGCAATTT
1 AGAAAGTTTAA-GGTCAAAATGAAATTTAAGG-AAAGTTTAGGGGTAAAAATGAAATTT
101742612 TTATTTTTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
59 13 0.27
60 35 0.73
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.31
Consensus pattern (59 bp):
AGAAAGTTTAAGGTCAAAATGAAATTTAAGGAAAGTTTAGGGGTAAAAATGAAATTTAA
Found at i:101742635 original size:24 final size:24
Alignment explanation
Indices: 101742608--101742653 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
101742598 TAAAAATGCA
*
101742608 ATTTTTATTTTTTGAAATTTTTTT
1 ATTTTTATTTTTTGAAAATTTTTT
*
101742632 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTGAAAATTTT
101742654 GAAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (24 bp):
ATTTTTATTTTTTGAAAATTTTTT
Found at i:101746762 original size:18 final size:19
Alignment explanation
Indices: 101746724--101746762 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
101746714 TGGTTCAAGC
*
101746724 TTTCAATCTCATATCTCAA
1 TTTCAATCTCACATCTCAA
*
101746743 TTTCAAT-TCACATTTCAA
1 TTTCAATCTCACATCTCAA
101746761 TT
1 TT
101746763 CTTAATTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCACATCTCAA
Found at i:101747303 original size:26 final size:26
Alignment explanation
Indices: 101747266--101747371 Score: 185
Period size: 26 Copynumber: 4.1 Consensus size: 26
101747256 GTACAAATTA
101747266 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
* *
101747292 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
101747318 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
*
101747344 ATAATGGTTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
101747370 AT
1 AT
101747372 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:101748572 original size:16 final size:15
Alignment explanation
Indices: 101748546--101748577 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
101748536 ACTAGATTGG
101748546 CAAAAGCCGAAAAGT
1 CAAAAGCCGAAAAGT
101748561 CAAAATGCCGAAAAGT
1 CAAAA-GCCGAAAAGT
101748577 C
1 C
101748578 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.22, G:0.19, T:0.09
Consensus pattern (15 bp):
CAAAAGCCGAAAAGT
Found at i:101749032 original size:27 final size:27
Alignment explanation
Indices: 101748992--101749089 Score: 144
Period size: 27 Copynumber: 3.6 Consensus size: 27
101748982 AGGAAGCGTC
101748992 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
101749019 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
101749046 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
101749073 CTGGTGGCTCTGCCACA
1 CTGGTGGCTATGCCACA
101749090 TATCCACAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 2 0.03
27 59 0.94
28 2 0.03
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:101750171 original size:6 final size:6
Alignment explanation
Indices: 101750147--101750196 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
101750137 ATAGTACCAG
* * * *
101750147 AACAGT AATCAGT AACAGT AGCAGT AACAGT AATAAT AACGGT AACAGT
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT
101750196 A
1 A
101750197 TTCAACACAC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AACAGT
Found at i:101750270 original size:45 final size:45
Alignment explanation
Indices: 101750183--101750391 Score: 234
Period size: 45 Copynumber: 4.8 Consensus size: 45
101750173 ACAGTAATAA
* * * * *
101750183 TAACGGTAACAGTATTCAACACACAAAGTGCCGAATCGGTAACGG
1 TAACAGTAACAATATTCGACACACAAAGTGCCAAATCAGTAACGG
* *
101750228 TAACAGTAACAATATTCGACACATAAAATGCCAAATCAGTAACGG
1 TAACAGTAACAATATTCGACACACAAAGTGCCAAATCAGTAACGG
*
101750273 TAACAGTAATAATATTCGACACACAAAGTGCCAAATC----A--G
1 TAACAGTAACAATATTCGACACACAAAGTGCCAAATCAGTAACGG
* * * * *
101750312 TAACAGTAACAATATTTGACACATAAAGTGTCGAATCAATAACGG
1 TAACAGTAACAATATTCGACACACAAAGTGCCAAATCAGTAACGG
*
101750357 TAATAGTAACAATAATT-GACACACAAAGTGCCAAA
1 TAACAGTAACAAT-ATTCGACACACAAAGTGCCAAA
101750392 CCGGTAACAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 33 0.24
41 1 0.01
43 1 0.01
45 100 0.72
46 3 0.02
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAATATTCGACACACAAAGTGCCAAATCAGTAACGG
Found at i:101750276 original size:84 final size:78
Alignment explanation
Indices: 101750181--101750364 Score: 188
Period size: 84 Copynumber: 2.2 Consensus size: 78
101750171 TAACAGTAAT
*
101750181 AATAACGGTAACAGTATTCAACACACAAAGTGCCGAATCGGTAACGGTAACAGTAACAATATTCG
1 AATAACGGTAACAGTATTCAACACACAAAGTGCCAAATC----A--GTAACAGTAACAATATTCG
101750246 ACACATAAAATGCCAAATC
60 ACACATAAAATGCCAAATC
* * *
101750265 AGTAACGGTAACAGTAATAATATTCGACACACAAAGTGCCAAATCAGTAACAGTAACAATATTTG
1 AATAACGGTAACAG------TATTCAACACACAAAGTGCCAAATCAGTAACAGTAACAATATTCG
* * *
101750330 ACACATAAAGTGTCGAATC
60 ACACATAAAATGCCAAATC
*
101750349 AATAACGGTAATAGTA
1 AATAACGGTAACAGTA
101750365 ACAATAATTG
Statistics
Matches: 85, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
78 2 0.02
84 59 0.69
86 1 0.01
90 23 0.27
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (78 bp):
AATAACGGTAACAGTATTCAACACACAAAGTGCCAAATCAGTAACAGTAACAATATTCGACACAT
AAAATGCCAAATC
Found at i:101750365 original size:84 final size:84
Alignment explanation
Indices: 101750227--101750400 Score: 251
Period size: 84 Copynumber: 2.1 Consensus size: 84
101750217 ATCGGTAACG
* *
101750227 GTAACAGTAACAATATTCGACACATAAAATGCCAAATCAGTAACGGTAACAGTAATAAT-ATTCG
1 GTAACAGTAACAATATTCGACACATAAAATGCCAAATCAATAACGGTAACAGTAACAATAATT-G
*
101750291 ACACACAAAGTGCCAAATCA
65 ACACACAAAGTGCCAAACCA
* * * * *
101750311 GTAACAGTAACAATATTTGACACATAAAGTGTCGAATCAATAACGGTAATAGTAACAATAATTGA
1 GTAACAGTAACAATATTCGACACATAAAATGCCAAATCAATAACGGTAACAGTAACAATAATTGA
*
101750376 CACACAAAGTGCCAAACCG
66 CACACAAAGTGCCAAACCA
101750395 GTAACA
1 GTAACA
101750401 ATAGCAGTAG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 77 0.96
85 3 0.04
ACGTcount: A:0.46, C:0.19, G:0.14, T:0.21
Consensus pattern (84 bp):
GTAACAGTAACAATATTCGACACATAAAATGCCAAATCAATAACGGTAACAGTAACAATAATTGA
CACACAAAGTGCCAAACCA
Found at i:101750832 original size:10 final size:10
Alignment explanation
Indices: 101750818--101750852 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
101750808 AATTAATAAA
101750818 AATTCCATTC
1 AATTCCATTC
*
101750828 CATTCCATTC
1 AATTCCATTC
*
101750838 AATTCAATTC
1 AATTCCATTC
101750848 AATTC
1 AATTC
101750853 AAATTCACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTCCATTC
Found at i:101750994 original size:18 final size:19
Alignment explanation
Indices: 101750962--101750997 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
101750952 TCCAATTAAT
101750962 ACATAGTTCACATATTTAC
1 ACATAGTTCACATATTTAC
*
101750981 ACATA-TTCATATATTTA
1 ACATAGTTCACATATTTA
101750998 ATTTATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.17, G:0.03, T:0.42
Consensus pattern (19 bp):
ACATAGTTCACATATTTAC
Found at i:101751236 original size:6 final size:6
Alignment explanation
Indices: 101751218--101751269 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
101751208 ACTTTTCCAA
*
101751218 TCAATT T-ACATT TTAATT TCAATT TCAATT TCAATT TCAATT TCAA-T
1 TCAATT TCA-ATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
101751265 TCAAT
1 TCAAT
101751270 AACAATTCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
5 6 0.14
6 35 0.83
7 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (6 bp):
TCAATT
Found at i:101752962 original size:21 final size:23
Alignment explanation
Indices: 101752903--101752986 Score: 77
Period size: 23 Copynumber: 3.7 Consensus size: 23
101752893 AAGTAGTACA
* *
101752903 TATTAT-TTTTATTATCTA-ATT
1 TATTATATTTTATTATATATATC
*
101752924 TATTAATGTTTTATTATATATAT-
1 TATT-ATATTTTATTATATATATC
* *
101752947 TATT-TATTTTACTATATTTATC
1 TATTATATTTTATTATATATATC
101752969 TATTATATTATTATTATA
1 TATTATATT-TTATTATA
101752987 CATTTTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
21 18 0.35
22 6 0.12
23 19 0.37
24 9 0.17
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (23 bp):
TATTATATTTTATTATATATATC
Found at i:101752964 original size:17 final size:16
Alignment explanation
Indices: 101752933--101753087 Score: 70
Period size: 16 Copynumber: 9.3 Consensus size: 16
101752923 TTATTAATGT
101752933 TTTATTATATATATTA
1 TTTATTATATATATTA
*
101752949 TTTATTTTACTATATTTA
1 TTTATTATA-TATA-TTA
*
101752967 TCTATTATAT-TATTA
1 TTTATTATATATATTA
* *
101752982 TTATACATTTTA-AAATT-
1 TT-T--ATTATATATATTA
* * *
101752999 TTCATCATATATTTTA
1 TTTATTATATATATTA
101753015 -TTATATATATATATTTA
1 TTTAT-TATATATA-TTA
*
101753032 TTTA-TATTTATATTATA
1 TTTATTATATATA-T-TA
*
101753049 TGTTTTTAGTATATATTA
1 T-TTATTA-TATATATTA
101753067 TTTA-TATATATTATTA
1 TTTATTATATA-TATTA
*
101753083 ATTAT
1 TTTAT
101753088 ATTGTTCATA
Statistics
Matches: 103, Mismatches: 19, Indels: 33
0.66 0.12 0.21
Matches are distributed among these distances:
14 4 0.04
15 14 0.14
16 36 0.35
17 15 0.15
18 26 0.25
19 3 0.03
20 5 0.05
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (16 bp):
TTTATTATATATATTA
Found at i:101753028 original size:18 final size:18
Alignment explanation
Indices: 101752932--101753081 Score: 67
Period size: 18 Copynumber: 8.1 Consensus size: 18
101752922 TTTATTAATG
101752932 TTTTATTATATATATTATTTA
1 TTTTATTATATATA-TA--TA
* * *
101752953 TTTTACTATATTTATCTA
1 TTTTATTATATATATATA
* *
101752971 TTATATTAT-TATTATACA
1 TTTTATTATATA-TATATA
** *
101752989 TTTTAAAATTTTCATCATATA
1 TTTTATTA-TAT-AT-ATATA
101753010 TTTTATTATATATATATA
1 TTTTATTATATATATATA
*
101753028 -TTTATT-TATATTTATA
1 TTTTATTATATATATATA
* * *
101753044 TTATATGTTTTTAGTATATA
1 TTTTAT-TATATA-TATATA
*
101753064 TTAT-TTATATATAT-TA
1 TTTTATTATATATATATA
101753080 TT
1 TT
101753082 AATTATATTG
Statistics
Matches: 99, Mismatches: 21, Indels: 23
0.69 0.15 0.16
Matches are distributed among these distances:
16 13 0.13
17 14 0.14
18 28 0.28
19 7 0.07
20 14 0.14
21 23 0.23
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (18 bp):
TTTTATTATATATATATA
Found at i:101753049 original size:39 final size:38
Alignment explanation
Indices: 101752932--101753089 Score: 58
Period size: 40 Copynumber: 4.3 Consensus size: 38
101752922 TTTATTAATG
* *
101752932 TTTTATTATATATATTATTTAT-TTTA-CTATATT-TA
1 TTTTATTATATATATTATTTATATATATTTATATTATA
* *
101752967 -TCTATTATAT-TATTA-TTATACAT-TTTA-A--A-A
1 TTTTATTATATATATTATTTATATATATTTATATTATA
* *
101752997 TTTTCATCATATATTTTATTATATATATATATT-TATTTATA
1 TTTT-ATTATATATATTATT-TATATATAT-TTATA-TTATA
*
101753038 TTTATATTATATGT-TT-TTAGTATATATTATTTATA-TATA
1 TTT-TATTATATATATTATT--TATATA-TATTTATATTATA
101753077 TTATTAATTATAT
1 TT-TT-ATTATAT
101753090 TGTTCATACT
Statistics
Matches: 91, Mismatches: 11, Indels: 37
0.65 0.08 0.27
Matches are distributed among these distances:
30 1 0.01
31 2 0.02
32 11 0.12
33 12 0.13
34 10 0.11
35 6 0.07
36 1 0.01
37 3 0.03
39 9 0.10
40 19 0.21
41 16 0.18
42 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (38 bp):
TTTTATTATATATATTATTTATATATATTTATATTATA
Found at i:101753056 original size:15 final size:13
Alignment explanation
Indices: 101753005--101753090 Score: 74
Period size: 13 Copynumber: 6.7 Consensus size: 13
101752995 AATTTTCATC
*
101753005 ATATATTTTA-TT
1 ATATATATTATTT
101753017 ATATATATATATTT
1 ATATATAT-TATTT
101753031 AT-T-TA-TATTT
1 ATATATATTATTT
*
101753041 ATATTATATGTTTTT
1 ATA-TATAT-TATTT
101753056 AGTATATATTATTT
1 A-TATATATTATTT
*
101753070 ATATATATTATTA
1 ATATATATTATTT
101753083 AT-TATATT
1 ATATATATT
101753091 GTTCATACTA
Statistics
Matches: 62, Mismatches: 4, Indels: 16
0.76 0.05 0.20
Matches are distributed among these distances:
10 7 0.11
12 16 0.26
13 18 0.29
14 9 0.15
15 10 0.16
16 2 0.03
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
ATATATATTATTT
Found at i:101757573 original size:19 final size:19
Alignment explanation
Indices: 101757549--101757639 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
101757539 AATCATATCT
*
101757549 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
101757568 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
101757586 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
101757603 TCTAAGATTACATATCACA
1 TCTAAGATTGCATATCATA
101757622 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
101757640 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.25
19 33 0.52
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:101757607 original size:35 final size:37
Alignment explanation
Indices: 101757549--101757639 Score: 132
Period size: 35 Copynumber: 2.5 Consensus size: 37
101757539 AATCATATCT
* *
101757549 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTACATATCACA
101757586 TCTAAGATTG-TATCATATCTAAGATTACATATCACA
1 TCTAAGATTGATATCATATCTAAGATTACATATCACA
101757622 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
101757640 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
35 18 0.37
36 15 0.31
37 10 0.20
38 6 0.12
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTACATATCACA
Found at i:101758359 original size:205 final size:205
Alignment explanation
Indices: 101758003--101758714 Score: 1154
Period size: 205 Copynumber: 3.5 Consensus size: 205
101757993 AAATTAACTT
* * * * * * *
101758003 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATATTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
101758068 GTGAAATCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
101758133 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTGCTCTCCATTGAAGTGG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
*
101758198 AGATGCTAGA
196 AGATGCCAGA
* * * *
101758208 CTTTGATTTGTTCTCTGACATTACAGAGACGACAAATCATCTTAGATTTACTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
101758273 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
** * *
101758338 GGATCTATTTCAGTATAAACATCTGAAGGTGAGATCTGCTATATATCTGCTCTCTATTGAAGTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
101758403 AGATGCCAGA
196 AGATGCCAGA
* *
101758413 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
101758478 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTTTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
101758543 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTGTGTATCTGCTCTCTATTGAAGTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
*
101758608 AGATACCAGA
196 AGATGCCAGA
* *
101758618 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATTGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
101758683 GTGAAAGCCAAATCAGCTATGTCTTCGATTTG
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTG
101758715 CTCTCCGCCA
Statistics
Matches: 469, Mismatches: 38, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
205 469 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
AGATGCCAGA
Found at i:101758742 original size:46 final size:44
Alignment explanation
Indices: 101758689--101758778 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
101758679 ACACGTGAAA
* *
101758689 GCCAAATCAGCTATGTCTTCGATTTGCTCTCCGCCAATACAGAGAT
1 GCCAAATCAGCTA--TCTTCGATCTGCTCTCCGACAATACAGAGAT
* * * *
101758735 GCCAAATCTGGTATCTTTGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCAGCTATCTTCGATCTGCTCTCCGACAATACAGAGAT
101758779 ACTGAATCTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 27 0.71
46 11 0.29
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
GCCAAATCAGCTATCTTCGATCTGCTCTCCGACAATACAGAGAT
Found at i:101758906 original size:44 final size:45
Alignment explanation
Indices: 101758730--101759197 Score: 276
Period size: 44 Copynumber: 10.6 Consensus size: 45
101758720 CGCCAATACA
* * * * * *
101758730 GAGATGCCAAATCTGGTATCTTTGATCTGCTCTCTGA-CAATACA-
1 GAGATGCCAAATCTGTTATCTTCGATCTGTTCCCT-ATAAACACAG
* ** * *
101758774 GAGATACTGAATCTGTTGTCTTC-AACTTGTTCCCTATAAACACAG
1 GAGATGCCAAATCTGTTATCTTCGATC-TGTTCCCTATAAACACAG
* *** * * *
101758819 G-GATACC--ATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAG
1 GAGATGCCAAAT-CTGTTATCTTCGATCTG-TTCCCTATAAACACAG
* * *
101758863 GAG-TGTCAGATCTGTTATCTTTGATCTGTTCCCTATAAACACA-
1 GAGATGCCAAATCTGTTATCTTCGATCTGTTCCCTATAAACACAG
* *
101758906 GAGATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAACACAG
1 GAGATGCCAAATCTGTTATCTTCGATC-TGTTCCCTATAAACACAG
** * * * * *
101758951 G-GATGCC--ATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCATAG
1 GAGATGCCAAAT-CTGTTATCTTCGATCTG-TTCCCTATAAACACAG
* *
101758995 GAG-TGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACA-
1 GAGATGCCAAATCTGTTATCTTCGATCTGTTCCCTATAAACACAG
* * * * *
101759038 GTGATGCCAAATTTGCTATCTTC-AACTTATTCCCTATAAACACAG
1 GAGATGCCAAATCTGTTATCTTCGATC-TGTTCCCTATAAACACAG
** * * * *
101759083 G-GATGCC--ATGCTGAAATCCTCGATCTGCTTCACTGTAAGCACAG
1 GAGATGCCAAAT-CTGTTATCTTCGATCTG-TTCCCTATAAACACAG
* *
101759127 GAG-TGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAG
1 GAGATGCCAAATCTGTTATCTTCGATCTGTTCCCTATAAACACAG
*
101759171 G-GATGCCAAATCTTGTT-TCTTTGATCT
1 GAGATGCCAAATC-TGTTATCTTCGATCT
101759198 ATATTGTCCC
Statistics
Matches: 319, Mismatches: 76, Indels: 58
0.70 0.17 0.13
Matches are distributed among these distances:
42 6 0.02
43 40 0.13
44 216 0.68
45 51 0.16
46 6 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (45 bp):
GAGATGCCAAATCTGTTATCTTCGATCTGTTCCCTATAAACACAG
Found at i:101758977 original size:132 final size:132
Alignment explanation
Indices: 101758783--101759183 Score: 694
Period size: 132 Copynumber: 3.0 Consensus size: 132
101758773 AGAGATACTG
* * * * *
101758783 AATCTGTTGTCTTCAACTTGTTCCCTATAAACACAGGGATACCATGCTAAAATCTTCGATCTGCT
1 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
*
101758848 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTTGATCTGTTCCCTATAAACACAGAGATGC
66 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
101758913 CA
131 CA
101758915 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
1 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
* *
101758980 TCGCTGTAAGCATAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGTGATGC
66 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
101759045 CA
131 CA
* *
101759047 AATTTGCTATCTTCAACTTATTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
1 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
* *
101759112 TCACTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGC
66 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
101759177 CA
131 CA
101759179 AATCT
1 AATCT
101759184 TGTTTCTTTG
Statistics
Matches: 255, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 255 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
CA
Found at i:101760102 original size:6 final size:6
Alignment explanation
Indices: 101760093--101760128 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
101760083 TTTTTTATCT
*
101760093 TTTTTA TTTTTA TTTTTA TTTTTT TATTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA T-TTTTA TTTTT
101760129 TTTGAAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:101760108 original size:13 final size:12
Alignment explanation
Indices: 101760074--101760131 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 12
101760064 TGGCCTCTCC
101760074 ATTTTTCTTTTTT
1 ATTTTT-TTTTTT
* *
101760087 -TTATCTTTTTT
1 ATTTTTTTTTTT
*
101760098 ATTTTTATTTTT
1 ATTTTTTTTTTT
101760110 ATTTTTTTATTTT
1 ATTTTTTT-TTTT
101760123 ATTTTTTTT
1 ATTTTTTTT
101760132 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
11 6 0.16
12 19 0.51
13 12 0.32
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.84
Consensus pattern (12 bp):
ATTTTTTTTTTT
Found at i:101760109 original size:14 final size:14
Alignment explanation
Indices: 101760082--101760130 Score: 66
Period size: 13 Copynumber: 3.5 Consensus size: 14
101760072 CCATTTTTCT
101760082 TTTTTTTATCTTTT-
1 TTTTTTTAT-TTTTA
101760096 TTATTTTTATTTTTA
1 TT-TTTTTATTTTTA
101760111 TTTTTTTA-TTTTA
1 TTTTTTTATTTTTA
101760124 TTTTTTT
1 TTTTTTT
101760131 TGAAATAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 12 0.36
14 12 0.36
15 9 0.27
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTTATTTTTA
Found at i:101760115 original size:20 final size:20
Alignment explanation
Indices: 101760084--101760128 Score: 74
Period size: 19 Copynumber: 2.2 Consensus size: 20
101760074 ATTTTTCTTT
101760084 TTTTTATCTTTTTTATTTTTA
1 TTTTTATCTTTTTTA-TTTTA
101760105 TTTTTAT-TTTTTTATTTTA
1 TTTTTATCTTTTTTATTTTA
101760124 TTTTT
1 TTTTT
101760129 TTTGAAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 10 0.42
20 7 0.29
21 7 0.29
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTATCTTTTTTATTTTA
Found at i:101760129 original size:20 final size:20
Alignment explanation
Indices: 101760081--101760129 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 20
101760071 TCCATTTTTC
101760081 TTTTTTTTATCTTTTTTATT
1 TTTTTTTTATCTTTTTTATT
101760101 TTTATTTTTAT-TTTTTTATT
1 TTT-TTTTTATCTTTTTTATT
101760121 TTATTTTTT
1 TT-TTTTTT
101760130 TTGAAATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (20 bp):
TTTTTTTTATCTTTTTTATT
Found at i:101765232 original size:28 final size:28
Alignment explanation
Indices: 101765166--101765293 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
101765156 CATGAGATTG
* * **
101765166 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
101765195 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101765223 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
101765252 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101765280 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
101765294 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:101765255 original size:57 final size:57
Alignment explanation
Indices: 101765166--101765293 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
101765156 CATGAGATTG
*
101765166 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
101765223 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
101765280 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
101765294 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:101773284 original size:28 final size:28
Alignment explanation
Indices: 101773221--101773345 Score: 169
Period size: 28 Copynumber: 4.4 Consensus size: 28
101773211 GAGATTGGCG
* * **
101773221 CTAAGTGTGCGGGTTTAAATTGCATAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
101773250 CTAAGTGTGCAAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
101773278 CTAAGTGTGCGAGTTTGATTATGTAAGCA
1 CTAAGTGTGCGAGTTTGATTATAT-AGCA
*
101773307 CTAAGTGTGCGAGTTTGATTATATAACA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
101773335 CTAAGTGTGCG
1 CTAAGTGTGCG
101773346 GACTTACTAT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.52
29 41 0.48
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:101777860 original size:17 final size:18
Alignment explanation
Indices: 101777807--101777932 Score: 170
Period size: 19 Copynumber: 6.9 Consensus size: 18
101777797 AATCATATCT
101777807 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
101777826 TCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATA
101777844 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
101777861 TCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATA
101777879 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
*
101777896 TCTAAGATTGTATATCACA
1 TCTAAGATTG-ATATCATA
101777915 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
101777933 TGAAGATTAT
Statistics
Matches: 97, Mismatches: 4, Indels: 12
0.86 0.04 0.11
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 33 0.34
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:101777865 original size:35 final size:35
Alignment explanation
Indices: 101777807--101777924 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
101777797 AATCATATCT
101777807 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
101777844 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
101777879 TCTAAGATTGTATCATATCTAAGATTGTATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
101777915 TCTAAGATTG
1 TCTAAGATTG
101777925 CATATCATTG
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 53 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:101779613 original size:15 final size:15
Alignment explanation
Indices: 101779593--101779622 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
101779583 AAAGAAAACG
101779593 TGGAAGCTACGCATC
1 TGGAAGCTACGCATC
101779608 TGGAAGCTACGCATC
1 TGGAAGCTACGCATC
101779623 AGTATGGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (15 bp):
TGGAAGCTACGCATC
Found at i:101780621 original size:103 final size:103
Alignment explanation
Indices: 101780493--101780698 Score: 403
Period size: 103 Copynumber: 2.0 Consensus size: 103
101780483 TTTAGGCAAT
*
101780493 ACGCATAGAGATGGAGAGAGGTGGCAATGCAAGTTCAACCACCATTGTTGGAGAATGAGATTATC
1 ACGCACAGAGATGGAGAGAGGTGGCAATGCAAGTTCAACCACCATTGTTGGAGAATGAGATTATC
101780558 ATGTTGTTCATCAACACTCTGAAGGCTCCATTCATTAC
66 ATGTTGTTCATCAACACTCTGAAGGCTCCATTCATTAC
101780596 ACGCACAGAGATGGAGAGAGGTGGCAATGCAAGTTCAACCACCATTGTTGGAGAATGAGATTATC
1 ACGCACAGAGATGGAGAGAGGTGGCAATGCAAGTTCAACCACCATTGTTGGAGAATGAGATTATC
101780661 ATGTTGTTCATCAACACTCTGAAGGCTCCATTCATTAC
66 ATGTTGTTCATCAACACTCTGAAGGCTCCATTCATTAC
101780699 CCATATGATT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 102 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (103 bp):
ACGCACAGAGATGGAGAGAGGTGGCAATGCAAGTTCAACCACCATTGTTGGAGAATGAGATTATC
ATGTTGTTCATCAACACTCTGAAGGCTCCATTCATTAC
Found at i:101789685 original size:38 final size:38
Alignment explanation
Indices: 101789626--101789699 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 38
101789616 TATTCGGGTT
*
101789626 AAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGAC
1 AAATCCCGCAGGCCTCATGCTGGTATTATATCCGGGAC
*
101789664 AAATCCCGCAGGCCT-AGTGCTGGTATTATATTCGGG
1 AAATCCCGCAGGCCTCA-TGCTGGTATTATATCCGGG
101789700 CCTTCCTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (38 bp):
AAATCCCGCAGGCCTCATGCTGGTATTATATCCGGGAC
Found at i:101789746 original size:43 final size:43
Alignment explanation
Indices: 101789671--101789846 Score: 302
Period size: 43 Copynumber: 4.1 Consensus size: 43
101789661 GACAAATCCC
* * * *
101789671 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCCTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
101789712 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
101789755 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
101789798 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
101789841 GCAGGC
1 GCAGGC
101789847 GTAATGCCAG
Statistics
Matches: 129, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
41 15 0.12
42 2 0.02
43 112 0.87
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:101790289 original size:43 final size:44
Alignment explanation
Indices: 101790176--101790289 Score: 117
Period size: 45 Copynumber: 2.6 Consensus size: 44
101790166 TTGACTTGAT
* * * **
101790176 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTAAGATAC
1 TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGT-AGATAC
* *
101790221 TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGT-GA-AC
1 TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTAGATAC
101790263 TGATATCGGGCC-TCGAGCCTAACAGGC
1 T-AT-TCGGGCCTTCGAGCCTAACAGGC
101790290 GAAATTTCGG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 3 0.05
43 18 0.30
44 6 0.10
45 33 0.55
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (44 bp):
TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTAGATAC
Found at i:101791881 original size:44 final size:44
Alignment explanation
Indices: 101791826--101792049 Score: 322
Period size: 44 Copynumber: 5.0 Consensus size: 44
101791816 AGATGATCTA
* * * *
101791826 GCATCTTTGTATTGTCAGAGAACAAATCGAAGATAGCAGATTTG
1 GCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTG
*
101791870 GCATCTCTGTATTGGCAGAGAGCAGATCGAAGGTAGCAGATTTG
1 GCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTG
*
101791914 GCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAGCAGATTTG
1 GCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTG
* *
101791958 GCATCTCTATATTGGCAGAGAGCAGATCGAAGATAACAGATTTG
1 GCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTG
* * * *
101792002 GCATCTCTGTACTGGCAGGGAGCAAATCGAAGACATAGCTGATTTG
1 GCATCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCAGATTTG
101792048 GC
1 GC
101792050 TTTCACGTGT
Statistics
Matches: 162, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 150 0.93
46 12 0.07
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (44 bp):
GCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTG
Found at i:101792076 original size:47 final size:47
Alignment explanation
Indices: 101792022--101792168 Score: 125
Period size: 47 Copynumber: 3.3 Consensus size: 47
101792012 ACTGGCAGGG
101792022 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
* * * * *
101792069 AGCAAATCTAAG----A--TGATTTGGCGTCTT--TGTATTTGCAG--GG
1 AGCAAATCGAAGACATAGCTGATTTGGC-T-TTCACGTGTTTAC-GTTGA
* *
101792109 AGCAGATCGAAGACATAGCTGATTTAGCTTTCACGTGTTTACGTTGA
1 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
*
101792156 AGCAAATCTAAGA
1 AGCAAATCGAAGA
101792169 TGATTTGGCA
Statistics
Matches: 73, Mismatches: 14, Indels: 26
0.65 0.12 0.23
Matches are distributed among these distances:
40 11 0.15
41 15 0.21
42 2 0.03
43 3 0.04
44 3 0.04
45 2 0.03
46 14 0.19
47 23 0.32
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (47 bp):
AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
Found at i:101792107 original size:87 final size:87
Alignment explanation
Indices: 101791996--101792213 Score: 364
Period size: 87 Copynumber: 2.5 Consensus size: 87
101791986 GAAGATAACA
* *
101791996 GATTTGGCATCTCTGTACTGGCAGGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAGCTGATTTAGCTTTCACGTGTT
101792061 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * * *
101792083 GATTTGGCGTCTTTGTATTTGCAGGGAGCAGATCGAAGACATAGCTGATTTAGCTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAGCTGATTTAGCTTTCACGTGTT
101792148 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* *
101792170 GATTTGGCATCTCTGTATTGGCGGGGAGCAAATCGAAAACATAG
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAG
101792214 TAGATCTGAC
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 119 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (87 bp):
GATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAGCTGATTTAGCTTTCACGTGTT
TACGTTGAAGCAAATCTAAGAT
Found at i:101794056 original size:18 final size:21
Alignment explanation
Indices: 101794016--101794064 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
101794006 AAAGTAGTAC
*
101794016 ATATTATTTTTATTATCTAAT
1 ATATTATTGTTATTATCTAAT
101794037 ATATTATTGTT-TTAT-TATAT
1 ATATTATTGTTATTATCTA-AT
101794057 ATATTATT
1 ATATTATT
101794065 TATTTTACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 14 0.54
21 10 0.38
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
ATATTATTGTTATTATCTAAT
Found at i:101794076 original size:17 final size:16
Alignment explanation
Indices: 101794047--101794196 Score: 66
Period size: 16 Copynumber: 9.3 Consensus size: 16
101794037 ATATTATTGT
101794047 TTTATTATATATATTA
1 TTTATTATATATATTA
*
101794063 TTTATTTTACTATATTTA
1 TTTATTATA-TATA-TTA
*
101794081 TCTATTATAT-TATTA
1 TTTATTATATATATTA
** *
101794096 TACATT-TA-AAATT-
1 TTTATTATATATATTA
*
101794109 TTTCATCATATACT-TTA
1 TTT-ATTATATA-TATTA
101794126 -TTA-TATATATATTTA
1 TTTATTATATATA-TTA
*
101794141 TTTA-TATTTATATTATA
1 TTTATTATATATA-T-TA
*
101794158 TGTTTTTAGTATATATTA
1 T-TTATTA-TATATATTA
101794176 TTTA-TATATATTATTA
1 TTTATTATATA-TATTA
*
101794192 ATTAT
1 TTTAT
101794197 ATTGTTCATA
Statistics
Matches: 101, Mismatches: 16, Indels: 33
0.67 0.11 0.22
Matches are distributed among these distances:
13 2 0.02
14 12 0.12
15 17 0.17
16 37 0.37
17 10 0.10
18 15 0.15
19 3 0.03
20 5 0.05
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (16 bp):
TTTATTATATATATTA
Found at i:101794097 original size:21 final size:21
Alignment explanation
Indices: 101794016--101794097 Score: 73
Period size: 21 Copynumber: 4.0 Consensus size: 21
101794006 AAAGTAGTAC
*
101794016 ATATTATTTTTATTATCTA-AT
1 ATATTATTTATATTAT-TATAT
101794037 ATATTATTGT-T-TTATTATAT
1 ATATTATT-TATATTATTATAT
* *
101794057 ATATTATTTATTTTACTATAT
1 ATATTATTTATATTATTATAT
*
101794078 TTATCTA-TTATATTATTATA
1 ATAT-TATTTATATTATTATA
101794098 CATTTAAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 3 0.06
20 15 0.29
21 31 0.60
22 3 0.06
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (21 bp):
ATATTATTTATATTATTATAT
Found at i:101803935 original size:50 final size:50
Alignment explanation
Indices: 101803855--101804187 Score: 292
Period size: 50 Copynumber: 6.6 Consensus size: 50
101803845 TTCGTTGTGA
* ** *
101803855 GTCACATGTGTAGTACTAAGTGTAAACTACTACGTGTACCAAATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
101803905 GTCATATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* ** ** * * * * * *
101803956 ATCATGTGTGTAGTACTAAGTTTAGGCTACAATGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
101804006 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * **
101804056 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * *
101804107 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGGTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
101804157 GTCGCATGTGTAGTACTAAGTGTAGGCTACT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACT
101804188 GTGCTTACCA
Statistics
Matches: 219, Mismatches: 58, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
49 6 0.03
50 138 0.63
51 72 0.33
52 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:101804112 original size:101 final size:101
Alignment explanation
Indices: 101804007--101804196 Score: 326
Period size: 101 Copynumber: 1.9 Consensus size: 101
101803997 GATGGTTAAG
* *
101804007 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
101804072 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCTA
66 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCTA
*
101804108 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGGTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
* * *
101804173 TAAGTGTAGGCTACTGTGCTTACC
66 TAAGTGCAGGCTACTATGCGTACC
101804197 AGAGAGCTTT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 83 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCTA
Found at i:101804134 original size:151 final size:151
Alignment explanation
Indices: 101803854--101804187 Score: 490
Period size: 151 Copynumber: 2.2 Consensus size: 151
101803844 ATTCGTTGTG
** *
101803854 AGTCACATGTGTAGTACTAAGTGTAAACTACTACGTGTACCAAATTGATAGGTCATATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGATAGGTCACATGTGTAGT
* **
101803919 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTTTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
** *
101803984 ACAATGTGTATCAGA-TGGTTA
131 ACAACATGTACCAGATTGG-TA
* * * * *
101804005 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGATAGGTCACATGTGTAGT
*
101804070 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCTATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
*
101804135 ACTACATGTACCAGATTGGTA
131 ACAACATGTACCAGATTGGTA
* *
101804156 GGTCGCATGTGTAGTACTAAGTGTAGGCTACT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACT
101804188 GTGCTTACCA
Statistics
Matches: 162, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
151 159 0.98
152 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGATAGGTCACATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
ACAACATGTACCAGATTGGTA
Found at i:101815976 original size:17 final size:17
Alignment explanation
Indices: 101815954--101815987 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
101815944 ATCCTTTATC
101815954 ATTTTT-TTAATTTCCTT
1 ATTTTTGTT-ATTTCCTT
101815971 ATTTTTGTTATTTCCTT
1 ATTTTTGTTATTTCCTT
101815988 TGTTATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.15, C:0.12, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTTTGTTATTTCCTT
Found at i:101823789 original size:39 final size:39
Alignment explanation
Indices: 101823677--101823792 Score: 187
Period size: 39 Copynumber: 3.0 Consensus size: 39
101823667 TTCAATGATG
* *
101823677 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
101823716 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
101823755 TATATCCAGACTTAAGGTCCACAGGCTACGTGCTGGAA
1 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAA
101823793 ATATGTCCGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (39 bp):
TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:101823817 original size:78 final size:78
Alignment explanation
Indices: 101823677--101823820 Score: 182
Period size: 78 Copynumber: 1.8 Consensus size: 78
101823667 TTCAATGATG
* * * * **
101823677 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTATATCCAGACTTAGGGTCCGCAGGC
1 TATATCCAGACTTAAGGTCCACAGGCTACGTGCTAGAAATATATCCAGACTTAAAGTCCGCAGGC
101823742 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* * * *
101823755 TATATCCAGACTTAAGGTCCACAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGG
1 TATATCCAGACTTAAGGTCCACAGGCTACGTGCTAGAAATATATCCAGACTTAAAGTC-CGCAGG
101823819 CT
65 CT
101823821 TCGAGCTGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 5 0.09
78 50 0.91
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
TATATCCAGACTTAAGGTCCACAGGCTACGTGCTAGAAATATATCCAGACTTAAAGTCCGCAGGC
TATGTGCTGGAAT
Found at i:101823819 original size:39 final size:39
Alignment explanation
Indices: 101823677--101823829 Score: 146
Period size: 39 Copynumber: 3.9 Consensus size: 39
101823667 TTCAATGATG
* * * * *
101823677 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCAGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
** * *
101823716 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCAGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* *
101823755 TATATCCAGACTTAAGGTCCACAGGCTACGTGCTGGAAA
1 TATATCCAGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* * * * *
101823794 TATGTCCGGGC-TAAAGTCTCGCAGGCTTCGAGCTGG
1 TATATCCAGACTTAAAGTC-CGCAGGCTACGTGCTGG
101823830 TATTTGTGAC
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 6 0.06
39 93 0.94
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCAGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
Found at i:101825565 original size:27 final size:27
Alignment explanation
Indices: 101825534--101825736 Score: 230
Period size: 27 Copynumber: 7.6 Consensus size: 27
101825524 TAAATTGTAC
*
101825534 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
101825561 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
101825587 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
101825615 GGCACTAAGTGTGCGAATTGAC-ATGC
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
101825641 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
101825668 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
101825695 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
101825722 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
101825737 GCTCAATATA
Statistics
Matches: 154, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.16
27 129 0.84
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:101825673 original size:80 final size:81
Alignment explanation
Indices: 101825533--101825715 Score: 226
Period size: 80 Copynumber: 2.3 Consensus size: 81
101825523 TTAAATTGTA
* **
101825533 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAATTGACTATGCGGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
*
101825598 GTGCGAATTGACCATG
66 GTGCGAATTGACCACG
* ** *
101825614 CGGCACTAAGTGTGCGAATTGAC-ATGCGGCACTAAGTGTGCGAGTTGACTATG-TAGCACTAAG
1 CAGCACTAAGTGTGCGAATTGACTATGCGGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAG
* **
101825677 TGTGCGATTTGATTACG
65 TGTGCGAATTGACCACG
* *
101825694 TAGCACTAAGTGTGCGAGTTGA
1 CAGCACTAAGTGTGCGAATTGA
101825716 TTATATAGCA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 65 0.75
81 21 0.24
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
CAGCACTAAGTGTGCGAATTGACTATGCGGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
GTGCGAATTGACCACG
Found at i:101825727 original size:107 final size:107
Alignment explanation
Indices: 101825535--101825736 Score: 271
Period size: 107 Copynumber: 1.9 Consensus size: 107
101825525 AAATTGTACA
* * *
101825535 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
101825600 GCGAATTGACCATGCGGCACTAAGTGTGCGAATTGACATGCG
66 GCGAATTGACCATACAGCACTAAGTGTGCGAATTGACATGCG
** *
101825642 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
* ** * *
101825706 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAATTGACCATACAGCACTAAGTGTGCG
101825737 GCTCAATATA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
106 1 0.01
107 80 0.99
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (107 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACAGCACTAAGTGTGCGAATTGACATGCG
Found at i:101833610 original size:27 final size:27
Alignment explanation
Indices: 101833580--101833835 Score: 257
Period size: 27 Copynumber: 9.5 Consensus size: 27
101833570 AAATTGTACA
101833580 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTT
* * *
101833607 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
101833634 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
101833661 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTT
* * *
101833688 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
101833715 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
101833742 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTT
* * *
101833770 GCACTAAGTGTGCG-ATTGATTACGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* * * * *
101833796 GCACTAAGTGTGTGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
101833823 GCACTGAGTGTGC
1 GCACTAAGTGTGC
101833836 AGGCTCAATA
Statistics
Matches: 192, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
26 24 0.12
27 143 0.74
28 25 0.13
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:101833807 original size:81 final size:81
Alignment explanation
Indices: 101833580--101833784 Score: 383
Period size: 81 Copynumber: 2.5 Consensus size: 81
101833570 AAATTGTACA
101833580 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
101833645 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
101833661 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
101833726 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *
101833742 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGATTC-GACTATGTTGCACTAAGTGTGCGA
101833785 TTGATTACGT
Statistics
Matches: 121, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
81 98 0.81
82 23 0.19
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:101837070 original size:25 final size:24
Alignment explanation
Indices: 101837042--101837094 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
101837032 TTGAATAATA
* * *
101837042 GTAAGCTCATGCGAGCTAAGTATCG
1 GTAAGCTCATACAAGCTAA-AATCG
*
101837067 GTAAGTTCATACAAGCTAAAATCG
1 GTAAGCTCATACAAGCTAAAATCG
101837091 GTAA
1 GTAA
101837095 TCTTAAAGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (24 bp):
GTAAGCTCATACAAGCTAAAATCG
Found at i:101846305 original size:41 final size:41
Alignment explanation
Indices: 101846260--101846492 Score: 322
Period size: 41 Copynumber: 5.7 Consensus size: 41
101846250 GAATATAAAC
* * * *
101846260 AGGGGCACGTATGTGCTATTTAAGGATACCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * *
101846301 AGGGGCACGGATGTGCTATTCAAGGGTACCGAAGTAAAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
*
101846342 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * * *
101846383 AGGGGAACATATGTGCAATTCAAGTGTACCGACGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * *
101846424 AGGGGGACGTATGTACAATTCAAGGGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
*
101846465 AGAGGCACGTATGTGCAATTCAAGGGTA
1 AGGGGCACGTATGTGCAATTCAAGGGTA
101846493 TAATTAATTA
Statistics
Matches: 169, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 169 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.21
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
Found at i:101857196 original size:43 final size:43
Alignment explanation
Indices: 101857107--101857241 Score: 141
Period size: 43 Copynumber: 3.1 Consensus size: 43
101857097 CTTACATGTT
* * * *
101857107 ATCACAA-ATCGATGCCATTGCCCCAGATAGGGTCTTACACGAA
1 ATCACAATA-CGATGCCAATGTCCCAGACACGGTCTTACACGAA
* *
101857150 ATCA-TATAACGATGCCAATGTCCCAGACATGGTCTTACAC-ATA
1 ATCACAAT-ACGATGCCAATGTCCCAGACACGGTCTTACACGA-A
* * *
101857193 ATCACAATACAATGCCAATGTCCCAGACGCGGTCTTACATGAA
1 ATCACAATACGATGCCAATGTCCCAGACACGGTCTTACACGAA
101857236 ATCACA
1 ATCACA
101857242 TCTCGATAAC
Statistics
Matches: 77, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
42 2 0.03
43 71 0.92
44 4 0.05
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (43 bp):
ATCACAATACGATGCCAATGTCCCAGACACGGTCTTACACGAA
Found at i:101857197 original size:86 final size:85
Alignment explanation
Indices: 101857076--101857239 Score: 188
Period size: 86 Copynumber: 1.9 Consensus size: 85
101857066 AGCTCGTACA
* ** * * *
101857076 ATGCCATATCCCAGATATAGTCTTACATGTTATCACAA-ATCGATGCCATTGCCCCAGATAG-GG
1 ATGCCATATCCCAGACATAGTCTTACACATAATCACAATA-CAATGCCAATGCCCCAGA-AGCGG
101857139 TCTTACACGAAATCATATAACG
64 TCTTACACGAAATCATATAACG
* * * *
101857161 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATACAATGCCAATGTCCCAGACGCGGT
1 ATGCC-ATATCCCAGACATAGTCTTACACATAATCACAATACAATGCCAATGCCCCAGAAGCGGT
*
101857226 CTTACATGAAATCA
65 CTTACACGAAATCA
101857240 CATCTCGATA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
85 6 0.09
86 58 0.89
87 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (85 bp):
ATGCCATATCCCAGACATAGTCTTACACATAATCACAATACAATGCCAATGCCCCAGAAGCGGTC
TTACACGAAATCATATAACG
Found at i:101863916 original size:13 final size:13
Alignment explanation
Indices: 101863898--101863924 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101863888 TGTGATCATT
101863898 GTAGCTTAATCTA
1 GTAGCTTAATCTA
101863911 GTAGCTTAATCTA
1 GTAGCTTAATCTA
101863924 G
1 G
101863925 CTAATCTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GTAGCTTAATCTA
Found at i:101864720 original size:45 final size:45
Alignment explanation
Indices: 101864633--101864720 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
101864623 AGACAAGAGA
* * * * *
101864633 TGAAAGATGTTATGGCATCATGATTCTATCTAGTAAGACCATAGG
1 TGAAAGATGTTATGGCATCACGACTCAATCAAGAAAGACCATAGG
* *
101864678 TGAAAGATGTTATGGTATCACGACTCAATCAAGAAAGGCCATA
1 TGAAAGATGTTATGGCATCACGACTCAATCAAGAAAGACCATA
101864721 TTTGAATCAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (45 bp):
TGAAAGATGTTATGGCATCACGACTCAATCAAGAAAGACCATAGG
Found at i:101865087 original size:41 final size:41
Alignment explanation
Indices: 101864996--101865095 Score: 121
Period size: 41 Copynumber: 2.5 Consensus size: 41
101864986 ATGATGTTGT
* *
101864996 GGTGTATTATAT-AGGCTTTATGCCTAGCAAGCTTCGTGCC
1 GGTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACC
* * * *
101865036 AGTGTATTATATCAGGCTTGGTGCCTAGCAGGCTTCGTATC
1 GGTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACC
* *
101865077 GGTGTGTTATATCAAGCTT
1 GGTGTATTATATCAGGCTT
101865096 TGAGCTTACC
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 11 0.22
41 39 0.78
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (41 bp):
GGTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACC
Found at i:101867770 original size:47 final size:47
Alignment explanation
Indices: 101867710--101867931 Score: 149
Period size: 47 Copynumber: 4.7 Consensus size: 47
101867700 ATTGTTGGCT
*
101867710 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* * * *
101867756 AATGTAAGACCATGTCTGGGACATGGCATCAG--CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* * * * *
101867804 AGTGTAAGA-CATGTCTGGGACAT-ACATTGGCTACGA-GATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-AC-ATTATGAGAGCC
* * * *
101867850 AGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGA-TAT-A-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC---ACATTATGAGAGCC
* *
101867897 AGTGTAAGACCATGTCTAGGACATGGCATTGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
101867932 CTTACCCACG
Statistics
Matches: 137, Mismatches: 26, Indels: 28
0.72 0.14 0.15
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 24 0.18
47 75 0.55
48 27 0.20
49 4 0.03
50 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:101867911 original size:94 final size:94
Alignment explanation
Indices: 101867707--101867929 Score: 249
Period size: 94 Copynumber: 2.4 Consensus size: 94
101867697 GTTATTGTTG
* * *
101867707 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATGATGAGAGCCAATGTAAGACCATGTC
* *
101867772 TGGGACATGGCATCAGCATTGAGACGAGA
66 TGAGACATGGCATCAGCATTGAGACGAAA
* * * * *
101867801 GCTAGTGTAAGACATGTCTGGGACATACATTGGCTACGA-GATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATGATGAGAGCCAATGTAAGACCATGT
*
101867865 CTGAGACATGGCATC-G-ACTTGAGA-TATAA
65 CTGAGACATGGCATCAGCA-TTGAGACGA-AA
*
101867894 G-TCAGTGTAAGACCATGTCTAGGACATGGCATTGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATTGGC
101867930 ACCTTACCCA
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
92 3 0.03
93 18 0.16
94 81 0.74
95 8 0.07
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATGATGAGAGCCAATGTAAGACCATGTC
TGAGACATGGCATCAGCATTGAGACGAAA
Found at i:101870052 original size:27 final size:27
Alignment explanation
Indices: 101870022--101870076 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
101870012 AATTCCTAGA
101870022 GCTAAAGCAACGCCAAATTTCAGGGAC
1 GCTAAAGCAACGCCAAATTTCAGGGAC
* * *
101870049 GCTAAAGCAAGGCCGAATTTCAGTGAC
1 GCTAAAGCAACGCCAAATTTCAGGGAC
101870076 G
1 G
101870077 AAATATGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (27 bp):
GCTAAAGCAACGCCAAATTTCAGGGAC
Found at i:101883546 original size:41 final size:41
Alignment explanation
Indices: 101883500--101883585 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 41
101883490 AAACGCCGCA
*
101883500 AAAAACTAAGCAATA-ACGGTGTTTTTGTTCAAAACACCACT
1 AAAAACTAAGCAATAGA-GGTATTTTTGTTCAAAACACCACT
* *
101883541 AAAAACTGAGCAATAGAGGTATTTTTGTTCAAAACGCCACT
1 AAAAACTAAGCAATAGAGGTATTTTTGTTCAAAACACCACT
101883582 AAAA
1 AAAA
101883586 TTGAGCAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 40 0.98
42 1 0.02
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (41 bp):
AAAAACTAAGCAATAGAGGTATTTTTGTTCAAAACACCACT
Found at i:101883653 original size:60 final size:60
Alignment explanation
Indices: 101883539--101883658 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 60
101883529 CAAAACACCA
* * * * *
101883539 CTAAAAACTGAGCAATAGAGGTATTTTTGTTCAAAACGCCACTAAAATTGAGCAATAGCG
1 CTAAAAACTGAGAAATAGAGGCATTTTTGTTCAAAACACCACTAAAACTAAGCAATAGCG
* * * *
101883599 CTAAAAACTGAGAAATGGCGGCGTTTTTG-TCCAAACACCACTAAAAACTAAGCAATAGCG
1 CTAAAAACTGAGAAATAGAGGCATTTTTGTTCAAAACACCACT-AAAACTAAGCAATAGCG
101883659 GCGTTTTTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 11 0.22
60 39 0.78
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (60 bp):
CTAAAAACTGAGAAATAGAGGCATTTTTGTTCAAAACACCACTAAAACTAAGCAATAGCG
Found at i:101883686 original size:41 final size:40
Alignment explanation
Indices: 101883599--101883676 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
101883589 AGCAATAGCG
* * *
101883599 CTAAAAACTGAGAAATGGCGGCGTTTTTGTCCAAACACCA
1 CTAAAAACTAAGAAATAGCGGCGTTTTTGTACAAACACCA
*
101883639 CTAAAAACTAAGCAATAGCGGCGTTTTTTGTTACAAAC
1 CTAAAAACTAAGAAATAGCGGCG-TTTTTG-TACAAAC
101883677 GCCGCAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 20 0.62
41 6 0.19
42 6 0.19
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (40 bp):
CTAAAAACTAAGAAATAGCGGCGTTTTTGTACAAACACCA
Found at i:101884025 original size:21 final size:22
Alignment explanation
Indices: 101883978--101884018 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
101883968 ATGGGTTTCT
*
101883978 TTAAACCCCTAAACCTTAAACA
1 TTAAACCCCTAAACCCTAAACA
101884000 TTAAA-CCCTAAACCCTAAA
1 TTAAACCCCTAAACCCTAAA
101884019 TTCTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (22 bp):
TTAAACCCCTAAACCCTAAACA
Found at i:101884503 original size:21 final size:20
Alignment explanation
Indices: 101884479--101884555 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 20
101884469 GTGCATGAAA
101884479 TTAGGGTTTAAGGTTTAGAAT
1 TTAGGGTTTAAGGTTTAG-AT
*
101884500 TTA-GGTTTAAGGTTTAGGGT
1 TTAGGGTTTAAGGTTTA-GAT
* *
101884520 ATT-GGGTTTATGGTTTAGTT
1 -TTAGGGTTTAAGGTTTAGAT
101884540 TATAGGGTTT-AGGTTT
1 T-TAGGGTTTAAGGTTT
101884556 TAAGGTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.02
20 22 0.47
21 24 0.51
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (20 bp):
TTAGGGTTTAAGGTTTAGAT
Found at i:101884575 original size:28 final size:27
Alignment explanation
Indices: 101884544--101884606 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
101884534 TTAGTTTATA
101884544 GGGTTTAGGTTTTAAGGTATTC-GGTATT
1 GGGTTTAGG-TTTAAGGTA-TCGGGTATT
*
101884572 GGGTTTAAGGTTTAGGGTATCGGGTATT
1 GGGTTT-AGGTTTAAGGTATCGGGTATT
*
101884600 GAGTTTA
1 GGGTTTA
101884607 CAAATTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 3 0.10
28 25 0.81
29 3 0.10
ACGTcount: A:0.19, C:0.03, G:0.35, T:0.43
Consensus pattern (27 bp):
GGGTTTAGGTTTAAGGTATCGGGTATT
Found at i:101885201 original size:154 final size:154
Alignment explanation
Indices: 101884898--101885184 Score: 368
Period size: 154 Copynumber: 1.9 Consensus size: 154
101884888 ACGCCAAATG
* * * * ** *
101884898 CCACAATAGATTAGCATTAGCCGTGTTTCTACGAAAACGTCGCAAAAAACAATTTTAAAACGACT
1 CCACAATAGATTAGCATTAGCCGCGTTTCTACAAAAACGCCCCAAAAAACAATAATAAAACGACG
* * *
101884963 CCGTCTTGTGATGCATCTTTAATGGCTTTTGCGGCCAATGGTGAAAAATGCCGCAATAGATTAGC
66 CCGTCTTGTGATGCATCTTTAATGGCTTTAGCGGCCAAGGGTGAAAAATCCCGCAATAGATTAGC
101885028 ATTAGCGACGTTTGTTAAAAAACA
131 ATTAGCGACGTTTGTTAAAAAACA
* * *
101885052 CCACAATAGATTAGCATTAGCGGCGTTTGTTA-AAAAACGCCCCAAAAAGA-AATAATAAAATGA
1 CCACAATAGATTAGCATTAGCCGCGTTT-CTACAAAAACGCCCCAAAAA-ACAATAATAAAACGA
* * *
101885115 CGCCGTCTTTTGATGCAT-TTTAGTGGCTTTAGCGGCGCTAGGGTG-AAAA-CCCGCAATAGATT
64 CGCCGTCTTGTGATGCATCTTTAATGGCTTTAGCGGC-CAAGGGTGAAAAATCCCGCAATAGATT
101885177 AGCATTAG
128 AGCATTAG
101885185 TGGCGTTTTT
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
152 20 0.18
153 20 0.18
154 71 0.62
155 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (154 bp):
CCACAATAGATTAGCATTAGCCGCGTTTCTACAAAAACGCCCCAAAAAACAATAATAAAACGACG
CCGTCTTGTGATGCATCTTTAATGGCTTTAGCGGCCAAGGGTGAAAAATCCCGCAATAGATTAGC
ATTAGCGACGTTTGTTAAAAAACA
Found at i:101885254 original size:113 final size:115
Alignment explanation
Indices: 101885045--101885300 Score: 349
Period size: 113 Copynumber: 2.2 Consensus size: 115
101885035 ACGTTTGTTA
* *
101885045 AAAAACACCACAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCCCAAAAAGAAATAATAA
1 AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
*
101885110 AATGACGCCGTCTTTTGATGCATTTTAGTGGCTTTAGCGGCGCTAGGGTG
66 AACGACGCCGTCTTTTGATGCATTTTAGTGGCTTTAGCGGCGCTAGGGTG
* * ** * *
101885160 -AAAAC-CCGCAATAGATTAGCATTAGTGGCGTTTTTTTTAAAACGCCACAAAAA-CAATATTAA
1 AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
* *
101885222 AACGACGCCGT-TTTGTGATGCATCTTTGGTGGCTTTAGCGGGGCTAGGGTG
66 AACGACGCCGTCTTT-TGATGCAT-TTTAGTGGCTTTAGCGGCGCTAGGGTG
* *
101885273 AAAAACGCTGCAATAGATTAGCATTAGC
1 AAAAACACCGCAATAGATTAGCATTAGC
101885301 CCGCAAAAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
111 3 0.02
112 25 0.20
113 67 0.54
114 10 0.08
115 19 0.15
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (115 bp):
AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
AACGACGCCGTCTTTTGATGCATTTTAGTGGCTTTAGCGGCGCTAGGGTG
Found at i:101888241 original size:9 final size:9
Alignment explanation
Indices: 101888229--101888492 Score: 115
Period size: 9 Copynumber: 30.0 Consensus size: 9
101888219 TATATCATAT
101888229 CATAACTTA
1 CATAACTTA
101888238 CATAACTTA
1 CATAACTTA
* *
101888247 TATACCTTA
1 CATAACTTA
101888256 CATAA--TA
1 CATAACTTA
*
101888263 CATAA-ATA
1 CATAACTTA
* *
101888271 TATATCATATA
1 CATAAC-T-TA
101888282 -ATAACTTA
1 CATAACTTA
101888290 CATAACTTA
1 CATAACTTA
*
101888299 CAAAACTTA
1 CATAACTTA
101888308 CATAA--TA
1 CATAACTTA
*
101888315 CATAA-ATA
1 CATAACTTA
* *
101888323 TATATCATATA
1 CATAAC-T-TA
101888334 -ATAACTTA
1 CATAACTTA
*
101888342 CATAA-ATA
1 CATAACTTA
* *
101888350 TATATCCTATA
1 CATA-ACT-TA
101888361 -ATAACTTA
1 CATAACTTA
101888369 CATAACTTA
1 CATAACTTA
101888378 CATAACTTA
1 CATAACTTA
**
101888387 TGTAA--TA
1 CATAACTTA
*
101888394 CATAA-ATA
1 CATAACTTA
* ** *
101888402 TATTTCATA
1 CATAACTTA
*
101888411 TCATAATTTA
1 -CATAACTTA
101888421 CATAACTTA
1 CATAACTTA
*
101888430 CATACCTTA
1 CATAACTTA
*
101888439 CATAAATT-
1 CATAACTTA
* * *
101888447 TATATCATA
1 CATAACTTA
101888456 TCATAACTTA
1 -CATAACTTA
101888466 CATAACTTA
1 CATAACTTA
*
101888475 CAAAACTTA
1 CATAACTTA
*
101888484 CTTAACTTA
1 CATAACTTA
101888493 TGTAATACAT
Statistics
Matches: 191, Mismatches: 45, Indels: 38
0.70 0.16 0.14
Matches are distributed among these distances:
7 19 0.10
8 29 0.15
9 116 0.61
10 21 0.11
11 6 0.03
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:101888272 original size:52 final size:52
Alignment explanation
Indices: 101888213--101888346 Score: 232
Period size: 52 Copynumber: 2.6 Consensus size: 52
101888203 ATCTTAATGT
* * * *
101888213 TAAATATATATCATATCATAACTTACATAACTTATATACCTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
101888265 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
101888317 TAAATATATATCATATAATAACTTACATAA
1 TAAATATATATCATATAATAACTTACATAA
101888347 ATATATATCC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 78 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (52 bp):
TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
Found at i:101888351 original size:79 final size:79
Alignment explanation
Indices: 101888261--101888425 Score: 267
Period size: 79 Copynumber: 2.1 Consensus size: 79
101888251 CCTTACATAA
101888261 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
1 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
101888326 ATCATATAATAACT
66 ATCATATAATAACT
* * **
101888340 TACATAAATATATATCCTATAATAACTTACATAACTTACATAACTTATGTAATACATAAATATAT
1 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
* * *
101888405 TTCATATCATAATT
66 ATCATATAATAACT
101888419 TACATAA
1 TACATAA
101888426 CTTACATACC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (79 bp):
TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
ATCATATAATAACT
Found at i:101888461 original size:79 final size:79
Alignment explanation
Indices: 101888261--101888465 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
101888251 CCTTACATAA
* * * * * **
101888261 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
1 TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
101888326 ATCATATAATAACT
66 ATCATATAATAACT
* * *
101888340 TACATAAATATATATCCTATAATAACTTACATAACTTACATAACTTATGTAATACATAAATATAT
1 TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
* * *
101888405 TTCATATCATAATT
66 ATCATATAATAACT
* * *
101888419 TACATAACTTACATA-CCT-TACATAAATT-TATATCATATCATAACTTA
1 TACATAA-ATACATATCCTATA-ATAAATTACATAACATA-CATAACTTA
101888466 CATAACTTAC
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 8 0.07
79 97 0.88
80 5 0.05
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.37
Consensus pattern (79 bp):
TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
ATCATATAATAACT
Found at i:101890878 original size:23 final size:23
Alignment explanation
Indices: 101890852--101890897 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
101890842 TGAGAAAGTA
*
101890852 CATGATCGAGCCACTTTGACTTT
1 CATGATCGAGCCACATTGACTTT
*
101890875 CATGATCGAGCCGCATTGACTTT
1 CATGATCGAGCCACATTGACTTT
101890898 ATGCAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.33
Consensus pattern (23 bp):
CATGATCGAGCCACATTGACTTT
Found at i:101894371 original size:31 final size:31
Alignment explanation
Indices: 101894311--101894394 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
101894301 AGATTAAATG
* * * *
101894311 TTTTTGGTTGTATTTTTTATGCTACATTTGTTG
1 TTTTTGGTTGGA--TTTAATGCTACATTTGCTA
* * *
101894344 TTTTTGGTTTGATTTCATGCTATATTTGCTA
1 TTTTTGGTTGGATTTAATGCTACATTTGCTA
101894375 TTTTTGGTTGGATTTAATGC
1 TTTTTGGTTGGATTTAATGC
101894395 AGGAAGGGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 33 0.77
33 10 0.23
ACGTcount: A:0.14, C:0.07, G:0.19, T:0.60
Consensus pattern (31 bp):
TTTTTGGTTGGATTTAATGCTACATTTGCTA
Found at i:101894492 original size:43 final size:43
Alignment explanation
Indices: 101894466--101894618 Score: 207
Period size: 43 Copynumber: 3.5 Consensus size: 43
101894456 GTAACAAATG
101894466 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
* * *
101894509 CGCCACTAAAAGCCAAGACTTTTAGCAGCGCTTCCCCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
* ** * **
101894552 CGCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCAATGAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
*
101894595 CGCCGCTAAAAGTCATGATCTTTT
1 CGCCGCTAAAAGCCATGA-CTTTT
101894619 GTGGCTTTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 91 0.95
44 5 0.05
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (43 bp):
CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
Found at i:101896623 original size:40 final size:40
Alignment explanation
Indices: 101896572--101896710 Score: 131
Period size: 41 Copynumber: 3.4 Consensus size: 40
101896562 TGTATATGTG
101896572 TGTGGCACTTAGTGTACGA-TTTGGAGTAGCTTCGGCTATA
1 TGTGGCACTTAGTGTACGAGTTT-GAGTAGCTTCGGCTATA
* ** * *
101896612 TGTGGCACTTAGTGTGCGAGACTGAGATAGCTTTGGCTATG
1 TGTGGCACTTAGTGTACGAGTTTGAG-TAGCTTCGGCTATA
**
101896653 TGAT-GCACTTAGTGTGTGAGGTTATGA-TAGCTTCGGCTATGA
1 TG-TGGCACTTAGTGTACGA-GTT-TGAGTAGCTTCGGCTAT-A
*
101896695 TATGGCACTTAGTGTA
1 TGTGGCACTTAGTGTA
101896711 ACACCCCGAA
Statistics
Matches: 80, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
40 21 0.26
41 42 0.52
42 14 0.17
43 3 0.04
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.35
Consensus pattern (40 bp):
TGTGGCACTTAGTGTACGAGTTTGAGTAGCTTCGGCTATA
Found at i:101896661 original size:41 final size:42
Alignment explanation
Indices: 101896598--101896709 Score: 133
Period size: 41 Copynumber: 2.7 Consensus size: 42
101896588 CGATTTGGAG
*
101896598 TAGCTTCGGCTATATG-TGGCACTTAGTGTGCGAGACTGA-GA
1 TAGCTTCGGCTATGTGATGGCACTTAGTGTGCGAG-CTGATGA
* * * *
101896639 TAGCTTTGGCTATGTGAT-GCACTTAGTGTGTGAGGTTATGA
1 TAGCTTCGGCTATGTGATGGCACTTAGTGTGCGAGCTGATGA
101896680 TAGCTTCGGCTATGAT-ATGGCACTTAGTGT
1 TAGCTTCGGCTATG-TGATGGCACTTAGTGT
101896710 AACACCCCGA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
40 2 0.03
41 46 0.75
42 13 0.21
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.35
Consensus pattern (42 bp):
TAGCTTCGGCTATGTGATGGCACTTAGTGTGCGAGCTGATGA
Found at i:101898086 original size:27 final size:27
Alignment explanation
Indices: 101898056--101898233 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
101898046 ATATTGAGTC
* * * *
101898056 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
101898083 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101898110 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
101898138 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
101898165 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
101898192 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101898219 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
101898234 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:101898195 original size:82 final size:81
Alignment explanation
Indices: 101898077--101898232 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
101898067 TGCTATATAA
* *
101898077 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
101898142 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
101898159 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
101898223 CACTTAGTGC
65 CACTTAGTGC
101898233 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:101908853 original size:27 final size:27
Alignment explanation
Indices: 101908823--101909000 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
101908813 ATATTGAGTC
* * * *
101908823 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
101908850 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101908877 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
101908905 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
101908932 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
101908959 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101908986 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
101909001 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:101908962 original size:82 final size:81
Alignment explanation
Indices: 101908844--101908999 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
101908834 TGCTATATAA
* *
101908844 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
101908909 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
101908926 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
101908990 CACTTAGTGC
65 CACTTAGTGC
101909000 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:101912538 original size:21 final size:21
Alignment explanation
Indices: 101912514--101912556 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
101912504 TACATCTTTA
101912514 ATAATTTCATATCAACAATCC
1 ATAATTTCATATCAACAATCC
101912535 ATAATTTCATATCAACAATCC
1 ATAATTTCATATCAACAATCC
101912556 A
1 A
101912557 CTCTTATGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATTTCATATCAACAATCC
Found at i:101913513 original size:26 final size:28
Alignment explanation
Indices: 101913454--101913513 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
101913444 TGCAATGAGA
*
101913454 TCGCACACTTAGTGCTTGATAGTTTTACT
1 TCGCACACTTAGTGCTT-ATAGTTTAACT
101913483 TCGCACACTTAGTGC-TATTA-TTTAAC-
1 TCGCACACTTAGTGCTTA-TAGTTTAACT
101913509 TCGCA
1 TCGCA
101913514 ATGCAATGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.17
27 6 0.21
28 3 0.10
29 15 0.52
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTATAGTTTAACT
Found at i:101934247 original size:44 final size:44
Alignment explanation
Indices: 101934156--101934277 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 44
101934146 CAACGCCATC
* * *
101934156 GTCCCA-AATGTGGTCTTACATGT-AATCACGTATCGATGCGACT
1 GTCCCAGAA-GTGGTCTTACACGTAAATCACATATCGATGCAACT
*
101934199 GTCCCAGACAG-GGTCTTACACGTAAATCACAAATCGATGCCAAC-
1 GTCCCAGA-AGTGGTCTTACACGTAAATCACATATCGATG-CAACT
*
101934243 GTCCCAGATGTGGTCTTACACG-AAATCACATATCG
1 GTCCCAGAAGTGGTCTTACACGTAAATCACATATCG
101934278 GAACCCTATG
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
43 30 0.44
44 34 0.50
45 4 0.06
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (44 bp):
GTCCCAGAAGTGGTCTTACACGTAAATCACATATCGATGCAACT
Found at i:101945784 original size:40 final size:40
Alignment explanation
Indices: 101945754--101945923 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
101945744 GGACTAAGAT
* *
101945754 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
101945794 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
101945834 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
101945874 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
101945913 CCGAAGGCATT
1 CCGAAGGCATT
101945924 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 33 0.28
40 85 0.72
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:101945838 original size:80 final size:79
Alignment explanation
Indices: 101945701--101945925 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 79
101945691 TTGAATGCTG
* * * * * * *
101945701 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
101945765 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
101945781 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* **
101945846 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * * *
101945861 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
101945926 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 36 0.29
80 83 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:101945943 original size:79 final size:80
Alignment explanation
Indices: 101945776--101945958 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
101945766 GTGCGAGATA
* * *
101945776 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
101945841 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
101945856 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
101945920 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
101945935 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
101945959 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:101948475 original size:44 final size:43
Alignment explanation
Indices: 101948378--101948478 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 43
101948368 CCAACGTCCT
* * * *
101948378 AGATGTGGTCTTACATGTAATCACATATCGATACCACTATCCC
1 AGATATGGTCTTACACGTAATCACAAATCGATACCAATATCCC
* * *
101948421 AGATAGGGTCTTACACGTAAATCACAAATCGATGCCAATGTCCC
1 AGATATGGTCTTACACGT-AATCACAAATCGATACCAATATCCC
101948465 AGACT-TGGTCTTAC
1 AGA-TATGGTCTTAC
101948479 GCAAAATCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 15 0.31
44 32 0.67
45 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
AGATATGGTCTTACACGTAATCACAAATCGATACCAATATCCC
Found at i:101955524 original size:6 final size:6
Alignment explanation
Indices: 101955513--101955538 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
101955503 TGGCGGTGGA
101955513 GGAGGC GGAGGC GGAGGC GGAGGC GG
1 GGAGGC GGAGGC GGAGGC GGAGGC GG
101955539 CGGTGCTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.69, T:0.00
Consensus pattern (6 bp):
GGAGGC
Found at i:101955525 original size:18 final size:18
Alignment explanation
Indices: 101955504--101955538 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
101955494 AGGCAGATAT
*
101955504 GGCGGTGGAGGAGGCGGA
1 GGCGGAGGAGGAGGCGGA
*
101955522 GGCGGAGGCGGAGGCGG
1 GGCGGAGGAGGAGGCGG
101955539 CGGTGCTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.69, T:0.03
Consensus pattern (18 bp):
GGCGGAGGAGGAGGCGGA
Found at i:101957697 original size:8 final size:8
Alignment explanation
Indices: 101957684--101957735 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
101957674 ATTTCATGGA
101957684 AAAATGAT
1 AAAATGAT
101957692 AAAATGAT
1 AAAATGAT
101957700 AAAA--AT
1 AAAATGAT
*
101957706 AATAATAATT
1 AA-AATGA-T
*
101957716 TAAATGAT
1 AAAATGAT
101957724 AAAATGAT
1 AAAATGAT
101957732 AAAA
1 AAAA
101957736 GAATAATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
6 4 0.11
7 2 0.05
8 24 0.65
9 5 0.14
10 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (8 bp):
AAAATGAT
Found at i:101964396 original size:40 final size:40
Alignment explanation
Indices: 101964341--101964458 Score: 218
Period size: 40 Copynumber: 3.0 Consensus size: 40
101964331 TGGAAAAAAA
101964341 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
101964381 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
101964421 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
101964459 GTTACATCCG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:101967545 original size:27 final size:27
Alignment explanation
Indices: 101967491--101967666 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
101967481 ATATTGAGTC
* * *
101967491 CGCACACTCAGTGCT--ATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
101967516 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101967543 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
101967571 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
101967598 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
101967625 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
101967652 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
101967667 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
25 14 0.11
27 90 0.70
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:101967609 original size:82 final size:81
Alignment explanation
Indices: 101967510--101967665 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
101967500 AGTGCTATAA
* * *
101967510 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCAC
101967574 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
101967592 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCACAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
101967657 ACTTAGTGC
66 ACTTAGTGC
101967666 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:101975622 original size:27 final size:27
Alignment explanation
Indices: 101975592--101975769 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
101975582 ATATTGAGTC
* * * *
101975592 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
101975619 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101975646 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
101975674 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
101975701 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
101975728 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101975755 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
101975770 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:101975731 original size:82 final size:81
Alignment explanation
Indices: 101975613--101975768 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
101975603 TGCTATATAA
* *
101975613 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
101975678 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
101975695 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
101975759 CACTTAGTGC
65 CACTTAGTGC
101975769 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:101980325 original size:40 final size:40
Alignment explanation
Indices: 101980270--101980387 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
101980260 TAGAAAAAAA
101980270 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
101980310 TATAACCGGGTTAAGTCCCGAAGGCATTCATGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
101980350 TATAATCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
101980388 GTTACATCCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Done.