Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 305 of 349
Found at i:101983754 original size:39 final size:39
Alignment explanation
Indices: 101983700--101983778 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
101983690 TATCACTATG
* *
101983700 AGTAATGTTGTTACTATTATATAATAATCCAAGAAACAT
1 AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
101983739 AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
1 AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
101983778 A
1 A
101983779 CTCATAGCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (39 bp):
AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
Found at i:101986347 original size:25 final size:25
Alignment explanation
Indices: 101986319--101986367 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
101986309 TTCGTTTGCT
*
101986319 GGTGAAAGGCAATACTGAAGTTTAG
1 GGTGAAAGGAAATACTGAAGTTTAG
101986344 GGTGAAAGGAAATACTGAAGTTTA
1 GGTGAAAGGAAATACTGAAGTTTA
101986368 ATCTCGTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.06, G:0.31, T:0.24
Consensus pattern (25 bp):
GGTGAAAGGAAATACTGAAGTTTAG
Found at i:101989767 original size:74 final size:69
Alignment explanation
Indices: 101989676--101989848 Score: 240
Period size: 74 Copynumber: 2.4 Consensus size: 69
101989666 ACAAACTTTA
* * *
101989676 TTATTTAAATTGCAAAAACCCCTAAAATTAATAATTGAAATGGTAAAAAAGTCATTACATAAATA
1 TTATTTAAATTGAAAAAACCCCTAAAATTAATAACTAAAATGG-AAAAAAGTCATTACATAAATA
101989741 TAAAG
65 TAAAG
101989746 TTGACTATTTAAATTGAAAAAACCCGCTAAAATTAATAACTAAAATGGAAAAAAGTCATTACATA
1 -T---TATTTAAATTGAAAAAACCC-CTAAAATTAATAACTAAAATGGAAAAAAGTCATTACATA
101989811 AATATAAAG
61 AATATAAAG
*
101989820 TTATTTAAATT-ACAAAACCCCCTAAAATT
1 TTATTTAAATTGA-AAAAACCCCTAAAATT
101989849 GATGATTTGA
Statistics
Matches: 93, Mismatches: 4, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
69 9 0.10
70 17 0.18
71 1 0.01
73 1 0.01
74 45 0.48
75 20 0.22
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (69 bp):
TTATTTAAATTGAAAAAACCCCTAAAATTAATAACTAAAATGGAAAAAAGTCATTACATAAATAT
AAAG
Found at i:101992088 original size:14 final size:16
Alignment explanation
Indices: 101992054--101992087 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
101992044 AAAGTCAAAT
101992054 AAAATTACATTATAAA
1 AAAATTACATTATAAA
101992070 AAAATTACATTA-AAA
1 AAAATTACATTATAAA
101992085 AAA
1 AAA
101992088 TCACAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATTACATTATAAA
Found at i:101992318 original size:102 final size:102
Alignment explanation
Indices: 101992068--101992654 Score: 626
Period size: 102 Copynumber: 5.9 Consensus size: 102
101992058 TTACATTATA
* ** *
101992068 AAAAAATTACATTA--AAAAAATCACAAAATGCTAAACTAAACACCAACAATTTATATAACCTAA
1 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAA-TT-TATAACCTAA
* * *
101992131 TAATAAATTACTAACAATATAACTATAAAATTACTTTTT
64 TCATAAATTACTAACAAAATAACTATAAAATTATTTTTT
* * *
101992170 AAATAAATTACATTACTAAACACTCACAAAAC-CTTAAACTAAACACTAACAATTTATAACCTAA
1 AAA-AATTTACATTACTAAAAAATCACAAAACAC-TAAACTAAACACTAACAATTTATAACCTAA
*
101992234 TCATAAATAACTAGA-AAAATAACTATAAAATTATTTTTT
64 TCATAAATTACTA-ACAAAATAACTATAAAATTATTTTTT
*
101992273 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAATCTAATC
1 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATC
*
101992338 ATAAATTACTAGCAAAATAACTATAAAATTATTTTTT
66 ATAAATTACTAACAAAATAACTATAAAATTATTTTTT
* * * *
101992375 -TAAATTTACATTAATAAAAAATCAGAAAACACTAAACTAAACATTAACAATTTATAACCTAATC
1 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATC
* *
101992439 ATAAATTACTAATAAAATAACTAT--AATTTTTTTTT
66 ATAAATTACTAACAAAATAACTATAAAATTATTTTTT
* * ** * *
101992474 CAAAATTTACATTACTAAAAACTCACAGGACAC---A--AAACACTAAAAAATTATAACCTAATC
1 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATC
* * *
101992534 ATAAATTACTAACAAAATAATTACCAAAA-TA-ATTTT
66 ATAAATTACTAACAAAATAACTA-TAAAATTATTTTTT
* * * * *
101992570 -ACAA--T--A--A-TAAAGAATCAAAAAAATACTAAACTAAACAC-AACAATTTATAACATAAT
1 AAAAATTTACATTACTAAAAAATC-ACAAAACACTAAACTAAACACTAACAATTTATAACCTAAT
* * *
101992626 CCTAAATTACAAACAAAATAATTATAAAA
65 CATAAATTACTAACAAAATAACTATAAAA
101992655 GAAAACCAAA
Statistics
Matches: 419, Mismatches: 49, Indels: 44
0.82 0.10 0.09
Matches are distributed among these distances:
88 7 0.02
89 6 0.01
91 1 0.00
92 5 0.01
93 38 0.09
94 6 0.01
95 47 0.11
96 4 0.01
97 2 0.00
98 2 0.00
99 10 0.02
100 26 0.06
101 81 0.19
102 93 0.22
103 58 0.14
104 4 0.01
105 29 0.07
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (102 bp):
AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATC
ATAAATTACTAACAAAATAACTATAAAATTATTTTTT
Found at i:101992430 original size:203 final size:201
Alignment explanation
Indices: 101992068--101992553 Score: 623
Period size: 203 Copynumber: 2.4 Consensus size: 201
101992058 TTACATTATA
* ** *
101992068 AAAAAATTACATTA--AAAAAATCACAAAATGCTAAACTAAACACCAACAATTTATATAACCTAA
1 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAA-TT-TATAACCTAA
* * * * *
101992131 TAATAAATTACTAACAATATAACTATAAAATTACTTTTTAAATAAATTACATTACTAAACACTCA
64 TCATAAATTACTAACAAAATAACTATAAAATTACTTTTTAAAT--ATTACATTAATAAAAAATCA
101992196 CAAAACCTTAAACTAAACACTAACAATTTATAACCTAATCATAAATAACTAGA-AAAATAACTAT
127 CAAAACCTTAAACTAAACACTAACAATTTATAACCTAATCATAAATAACTA-ATAAAATAACTAT
101992260 AAAATTATTTTTT
191 --AATTATTTTTT
*
101992273 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAATCTAATC
1 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATC
* * *
101992338 ATAAATTACTAGCAAAATAACTATAAAATTATTTTTTTAAAT-TTACATTAATAAAAAATCAGAA
66 ATAAATTACTAACAAAATAACTATAAAATTA-CTTTTTAAATATTACATTAATAAAAAATCACAA
* *
101992402 AACAC-TAAACTAAACATTAACAATTTATAACCTAATCATAAATTACTAATAAAATAACTATAAT
130 AAC-CTTAAACTAAACACTAACAATTTATAACCTAATCATAAATAACTAATAAAATAACTATAAT
*
101992466 TTTTTTTT
194 TATTTTTT
* * ** * *
101992474 CAAAATTTACATTACTAAAAACTCACAGGACAC---A--AAACACTAAAAAATTATAACCTAATC
1 AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATC
101992534 ATAAATTACTAACAAAATAA
66 ATAAATTACTAACAAAATAA
101992554 TTACCAAAAT
Statistics
Matches: 252, Mismatches: 24, Indels: 19
0.85 0.08 0.06
Matches are distributed among these distances:
196 42 0.17
198 1 0.00
201 39 0.15
202 1 0.00
203 73 0.29
204 1 0.00
205 52 0.21
206 11 0.04
207 32 0.13
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.30
Consensus pattern (201 bp):
AAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATC
ATAAATTACTAACAAAATAACTATAAAATTACTTTTTAAATATTACATTAATAAAAAATCACAAA
ACCTTAAACTAAACACTAACAATTTATAACCTAATCATAAATAACTAATAAAATAACTATAATTA
TTTTTT
Found at i:101992736 original size:14 final size:14
Alignment explanation
Indices: 101992717--101992746 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
101992707 ACTAAACATA
101992717 AATAATTTATAGAT
1 AATAATTTATAGAT
101992731 AATAATTTATAGAT
1 AATAATTTATAGAT
101992745 AA
1 AA
101992747 AAATCCAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (14 bp):
AATAATTTATAGAT
Found at i:101994693 original size:25 final size:25
Alignment explanation
Indices: 101994665--101994715 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
101994655 TCCAGTTGCT
*
101994665 AGGAAAGGCCTTCCTATGATTATTG
1 AGGAAAGGCCTTCCTAGGATTATTG
101994690 AGGAAAGGCCTTCCTAGGATTATTG
1 AGGAAAGGCCTTCCTAGGATTATTG
101994715 A
1 A
101994716 CACCATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (25 bp):
AGGAAAGGCCTTCCTAGGATTATTG
Found at i:101998049 original size:27 final size:26
Alignment explanation
Indices: 101998019--101998091 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 26
101998009 GGTGGCTACA
101998019 CCACAATTATCTGATCTGGT-AGCTCTG
1 CCAC-ATTATCTGATCTGGTGA-CTCTG
* *
101998046 CCACGATTTTTTGTATCTGGTGACTCTG
1 CCAC-ATTATCTG-ATCTGGTGACTCTG
* *
101998074 TCACATTATCTGTTCTGG
1 CCACATTATCTGATCTGG
101998092 CAGCCATGCT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
26 5 0.14
27 16 0.43
28 15 0.41
29 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (26 bp):
CCACATTATCTGATCTGGTGACTCTG
Found at i:102001622 original size:27 final size:28
Alignment explanation
Indices: 102001562--102001615 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
102001552 TAAAATAATT
*
102001562 AAAATTAATTATGTTAATAATTTAAGTG
1 AAAATTAATTATGTTAATAATTAAAGTG
*
102001590 AAAATTAATTAT-TTTATAATTAAAGT
1 AAAATTAATTATGTTAATAATTAAAGT
102001616 ATGAATTTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (28 bp):
AAAATTAATTATGTTAATAATTAAAGTG
Found at i:102005334 original size:22 final size:22
Alignment explanation
Indices: 102005280--102005321 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
102005270 AAGTGGATGA
102005280 TATTAATGGTATTTCATTAAGG
1 TATTAATGGTATTTCATTAAGG
102005302 TATTAATGGTATTTCATTAA
1 TATTAATGGTATTTCATTAA
102005322 AGTTATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (22 bp):
TATTAATGGTATTTCATTAAGG
Found at i:102006803 original size:12 final size:10
Alignment explanation
Indices: 102006771--102006804 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
102006761 TAGGTTTGAT
102006771 TATGTGCATA
1 TATGTGCATA
102006781 TATGTGCATA
1 TATGTGCATA
102006791 TATGTGCATA
1 TATGTGCATA
102006801 TATG
1 TATG
102006805 GTTGATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (10 bp):
TATGTGCATA
Found at i:102014157 original size:43 final size:43
Alignment explanation
Indices: 102014104--102014223 Score: 222
Period size: 43 Copynumber: 2.8 Consensus size: 43
102014094 GGCGTTTATT
*
102014104 AAAAGTGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAGA
1 AAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAGA
*
102014147 AAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAATA
1 AAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAGA
102014190 AAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGC
1 AAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGC
102014224 CATTTTCCCA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAGA
Found at i:102014667 original size:24 final size:21
Alignment explanation
Indices: 102014603--102014661 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
102014593 CTATGCTCTA
* *
102014603 CCTCCCTCGCTGTTGCCCCTG
1 CCTCCCTCGCTGCTGCCGCTG
102014624 CCTCCCTCGCTGCTGCCGCTG
1 CCTCCCTCGCTGCTGCCGCTG
*
102014645 CCTCCCTCTCTGCTGCC
1 CCTCCCTCGCTGCTGCC
102014662 TCCGCTCTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.00, C:0.54, G:0.19, T:0.27
Consensus pattern (21 bp):
CCTCCCTCGCTGCTGCCGCTG
Found at i:102015098 original size:13 final size:14
Alignment explanation
Indices: 102015073--102015101 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
102015063 TGATGAATTG
102015073 AATTAAACAATTAT
1 AATTAAACAATTAT
102015087 AATTAAAC-ATTAT
1 AATTAAACAATTAT
102015100 AA
1 AA
102015102 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:102015305 original size:16 final size:17
Alignment explanation
Indices: 102015268--102015306 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
102015258 AAAATATTAT
*
102015268 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
102015285 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
102015301 TTAATA
1 TTAATA
102015307 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:102020320 original size:34 final size:34
Alignment explanation
Indices: 102020284--102020425 Score: 110
Period size: 34 Copynumber: 4.1 Consensus size: 34
102020274 GTTATGTATG
102020284 ATATGATATATATTTAAGT-ATTATGTAAGTTAT
1 ATATGATATATATTTAAGTAATTATGTAAGTTAT
* * *
102020317 GATATGATATATATTTATGTAAATTATAT-ATTTAT
1 -ATATGATATATATTTAAGT-AATTATGTAAGTTAT
* * * * * * *
102020352 CTAAGTTGTATAAGTTATGTAAGTTATGTAAATTAT
1 ATATGATATAT-ATTTAAGTAA-TTATGTAAGTTAT
* *
102020388 AATATAAAATATATTTAAGT-ATTATGTAAGTTAT
1 -ATATGATATATATTTAAGTAATTATGTAAGTTAT
102020422 ATAT
1 ATAT
102020426 TTATCTAAGT
Statistics
Matches: 83, Mismatches: 19, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
33 4 0.05
34 39 0.47
35 18 0.22
36 17 0.20
37 5 0.06
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (34 bp):
ATATGATATATATTTAAGTAATTATGTAAGTTAT
Found at i:102020374 original size:9 final size:9
Alignment explanation
Indices: 102020304--102020475 Score: 54
Period size: 9 Copynumber: 19.6 Consensus size: 9
102020294 TATTTAAGTA
102020304 TTATGTAAG
1 TTATGTAAG
*
102020313 TTATGATATG
1 TTATG-TAAG
* * *
102020323 ATATAT-AT
1 TTATGTAAG
*
102020331 TTATGTAAA
1 TTATGTAAG
* *
102020340 TTATAT-AT
1 TTATGTAAG
*
102020348 TTATCTAAG
1 TTATGTAAG
* *
102020357 TTGTATAAG
1 TTATGTAAG
102020366 TTATGTAAG
1 TTATGTAAG
*
102020375 TTATGTAAA
1 TTATGTAAG
102020384 TTA--TAA-
1 TTATGTAAG
* *
102020390 -TAT-AAAA
1 TTATGTAAG
*
102020397 TATATTTAAG
1 T-TATGTAAG
102020407 TATTATGTAAG
1 T--TATGTAAG
* *
102020418 TTATAT-AT
1 TTATGTAAG
*
102020426 TTATCTAAG
1 TTATGTAAG
*
102020435 TTATATAAG
1 TTATGTAAG
*
102020444 TTATGTACG
1 TTATGTAAG
*
102020453 TTTTGTAAG
1 TTATGTAAG
* *
102020462 TTATATAAA
1 TTATGTAAG
102020471 TTATG
1 TTATG
102020476 ATATCAAATA
Statistics
Matches: 118, Mismatches: 35, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 3 0.03
8 16 0.14
9 78 0.66
10 9 0.08
11 8 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:102020434 original size:17 final size:17
Alignment explanation
Indices: 102020409--102020441 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
102020399 TATTTAAGTA
*
102020409 TTATGTAAGTTATATAT
1 TTATCTAAGTTATATAT
102020426 TTATCTAAGTTATATA
1 TTATCTAAGTTATATA
102020442 AGTTATGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TTATCTAAGTTATATAT
Found at i:102020599 original size:15 final size:15
Alignment explanation
Indices: 102020579--102020634 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
102020569 AAGTAGCGGG
102020579 ATTAAATAATATTTA
1 ATTAAATAATATTTA
102020594 ATTAAATAATATTT-
1 ATTAAATAATATTTA
102020608 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
102020623 ATTAAGTAATAT
1 ATTAAATAATAT
102020635 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:102021640 original size:356 final size:357
Alignment explanation
Indices: 102020844--102021722 Score: 1661
Period size: 356 Copynumber: 2.5 Consensus size: 357
102020834 ATAAAACGGA
* *
102020844 GAATTTTTTAAGATTCATCATACGCGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACATAGGGAGGATCCATTATATCTTGCAG
*
102020909 CTCGATATAAGGCAACCCGCCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
*
102020974 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
102021039 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
102021104 TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
261 TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
102021169 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
102021201 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACATAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACATAGGGAGGATCCATTATATCTTGCAG
102021266 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
102021331 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
102021396 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGC-AAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
102021460 TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
261 TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
102021525 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
* * *
102021557 GAATTTTTTAAGATTTATCATACGTGGCGTTGTTACACTTAGGGAGAATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACATAGGGAGGATCCATTATATCTTGCAG
*
102021622 CTCGATATAAGGCAACCCGTCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
* *
102021687 AAGGTTGGAGAGAAGGTCATCCATTGCTGTAATTTT
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTT
102021723 AATGGACAAG
Statistics
Matches: 512, Mismatches: 10, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
356 280 0.55
357 232 0.45
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (357 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACATAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
Found at i:102022489 original size:183 final size:183
Alignment explanation
Indices: 102022170--102022544 Score: 678
Period size: 183 Copynumber: 2.0 Consensus size: 183
102022160 ATAGTACCTA
*
102022170 AAACAGATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTT
1 AAACACATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTT
*
102022235 ATCTATATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGT
66 ATCTATATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGC
* *
102022300 AGGAGGAGCAGGAAGTAGTAACTGAAATACATACAACATTAATTCACTAATAC
131 AGGAGGAGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATAC
*
102022353 AAACACATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTT
1 AAACACATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTT
102022418 ATCTATATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGC
66 ATCTATATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGC
* *
102022483 AGGAGGAGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATAT
131 AGGAGGAGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATAC
*
102022536 AGACACATG
1 AAACACATG
102022545 GAACTATATC
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 184 1.00
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.27
Consensus pattern (183 bp):
AAACACATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTT
ATCTATATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGC
AGGAGGAGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATAC
Found at i:102024976 original size:21 final size:21
Alignment explanation
Indices: 102024952--102024995 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
102024942 ATCCCTATAA
* **
102024952 CCTTAATCCCTAATGTATATC
1 CCTTAAACCCTAAACTATATC
102024973 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
102024994 CC
1 CC
102024996 CCAACCATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.34, G:0.02, T:0.32
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:102025229 original size:7 final size:7
Alignment explanation
Indices: 102025217--102025243 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
102025207 CCCTAAGTAT
102025217 TAACCCC
1 TAACCCC
102025224 TAACCCC
1 TAACCCC
102025231 TAACCCC
1 TAACCCC
102025238 TAACCC
1 TAACCC
102025244 TTAAATCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.56, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCC
Found at i:102025263 original size:21 final size:22
Alignment explanation
Indices: 102025232--102025275 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
102025222 CCTAACCCCT
*
102025232 AACCCCTAACCCTTAAATCATA
1 AACCCCTAACCCTTAAACCATA
102025254 AACCCC-AACCCTTAAACCATA
1 AACCCCTAACCCTTAAACCATA
102025275 A
1 A
102025276 TACATAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACCCTTAAACCATA
Found at i:102025406 original size:41 final size:41
Alignment explanation
Indices: 102025349--102025568 Score: 343
Period size: 41 Copynumber: 5.4 Consensus size: 41
102025339 AACCCTAAAC
* * *
102025349 TTTTTAGCGGCATTTTACCAAAAGCGCCGTTAATGCTCTTA
1 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* *
102025390 TTTTTAGCGACGTTTTACCAAAAGCGCCGTTAATGCTCTGA
1 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* *
102025431 TTTTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTCTTA
1 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
102025472 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* *
102025513 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTATTGCTC-TG
1 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTTA
102025553 TTTTTAGCGACGTTTT
1 TTTTTAGCGACGTTTT
102025569 TGGTAAAACG
Statistics
Matches: 168, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 17 0.10
41 151 0.90
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (41 bp):
TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTTA
Found at i:102031094 original size:34 final size:34
Alignment explanation
Indices: 102031022--102031112 Score: 92
Period size: 34 Copynumber: 2.6 Consensus size: 34
102031012 TTGCATATTG
* * * *
102031022 TACTGAAATGGGCTAAGTCCCAGACTACCATTGT
1 TACTGAAATGGGCTAAGGCCCAAACTACCACTGC
* * *
102031056 TACTGAAATGGGCTTAGGCCCAAACTGCTACTGC
1 TACTGAAATGGGCTAAGGCCCAAACTACCACTGC
*
102031090 TACTGAAAGAGGGGCTAAGGCCC
1 TACTG-AA-ATGGGCTAAGGCCC
102031113 TGAACTGGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
34 32 0.70
35 2 0.04
36 12 0.26
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (34 bp):
TACTGAAATGGGCTAAGGCCCAAACTACCACTGC
Found at i:102045579 original size:17 final size:17
Alignment explanation
Indices: 102045540--102045635 Score: 129
Period size: 17 Copynumber: 5.4 Consensus size: 17
102045530 TGGGCCATTT
*
102045540 TGGGCCGAATTGGGCCATG
1 TGGGCCCAA-TGGGCC-TG
102045559 TGGGCCCAATGGGCCTG
1 TGGGCCCAATGGGCCTG
102045576 TGGGCCCAATGGGCCTG
1 TGGGCCCAATGGGCCTG
*
102045593 TGGGCCGAATTGGGCCATG
1 TGGGCCCAA-TGGGCC-TG
*
102045612 TGGGCCCAATAGGCCTG
1 TGGGCCCAATGGGCCTG
102045629 TGGGCCC
1 TGGGCCC
102045636 TACACGAGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 36 0.51
18 17 0.24
19 18 0.25
ACGTcount: A:0.14, C:0.27, G:0.41, T:0.19
Consensus pattern (17 bp):
TGGGCCCAATGGGCCTG
Found at i:102045581 original size:36 final size:36
Alignment explanation
Indices: 102045528--102045635 Score: 139
Period size: 36 Copynumber: 3.0 Consensus size: 36
102045518 CCGGAACGGT
* *
102045528 ATTGGGCCATTTTGGGCCGAATTGGGCCATGTGGGCCCA
1 ATTGGGCCA-TGTGGGCCCAA-TGGGCC-TGTGGGCCCA
*
102045567 A-TGGGCC-TGTGGGCCCAATGGGCCTGTGGGCCGA
1 ATTGGGCCATGTGGGCCCAATGGGCCTGTGGGCCCA
*
102045601 ATTGGGCCATGTGGGCCCAATAGGCCTGTGGGCCC
1 ATTGGGCCATGTGGGCCCAATGGGCCTGTGGGCCC
102045636 TACACGAGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
34 10 0.16
35 12 0.19
36 33 0.53
38 6 0.10
39 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.39, T:0.21
Consensus pattern (36 bp):
ATTGGGCCATGTGGGCCCAATGGGCCTGTGGGCCCA
Found at i:102048424 original size:22 final size:22
Alignment explanation
Indices: 102048396--102048443 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
102048386 AAAAAGAGCG
102048396 ACAAGCAAATGATTTTTCTAAA
1 ACAAGCAAATGATTTTTCTAAA
*
102048418 ACAAGCAAATGATTTTTCTAGA
1 ACAAGCAAATGATTTTTCTAAA
102048440 ACAA
1 ACAA
102048444 CACTATCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (22 bp):
ACAAGCAAATGATTTTTCTAAA
Found at i:102051585 original size:30 final size:29
Alignment explanation
Indices: 102051549--102051606 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
102051539 TGAGATGATT
*
102051549 TATCAT-AGAAATGTATATGTTATATGGAAA
1 TATCATAAGAAAAG-ATATG-TATATGGAAA
*
102051579 TATCATAAGAAAAGATATGTGTATGGAA
1 TATCATAAGAAAAGATATGTATATGGAA
102051607 GTTATTACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 11 0.44
31 6 0.24
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.33
Consensus pattern (29 bp):
TATCATAAGAAAAGATATGTATATGGAAA
Found at i:102056391 original size:40 final size:40
Alignment explanation
Indices: 102056339--102056440 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 40
102056329 ATATCGGTCT
* *
102056339 CGCATACTAAGTGCCATATATAGCCAAATCTATT-CCGAAA
1 CGCACACTAAGTGCCATATATAGCCAAAGCT-TTGCCGAAA
** ** *
102056379 CGCACACTAAGTGCCATATATAGCTGAAGCTTTGTTGAAT
1 CGCACACTAAGTGCCATATATAGCCAAAGCTTTGCCGAAA
102056419 CGCACACTAAGTGCCATATATA
1 CGCACACTAAGTGCCATATATA
102056441 TATTTGAATT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 2 0.04
40 52 0.96
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (40 bp):
CGCACACTAAGTGCCATATATAGCCAAAGCTTTGCCGAAA
Found at i:102068501 original size:14 final size:14
Alignment explanation
Indices: 102068482--102068513 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
102068472 GATTTTTGCA
102068482 TGTACTAATTGGCC
1 TGTACTAATTGGCC
102068496 TGTACTAATTGGCC
1 TGTACTAATTGGCC
102068510 TGTA
1 TGTA
102068514 ACATGGGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (14 bp):
TGTACTAATTGGCC
Found at i:102074083 original size:40 final size:40
Alignment explanation
Indices: 102074000--102074182 Score: 140
Period size: 40 Copynumber: 4.6 Consensus size: 40
102073990 TTGAATGCTG
* * * * *
102074000 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* *
102074040 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
** * *
102074080 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
102074120 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * *
102074159 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATT
102074183 TGAACGAGGA
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 36 0.29
40 77 0.62
41 10 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:102074164 original size:39 final size:39
Alignment explanation
Indices: 102074053--102074182 Score: 179
Period size: 40 Copynumber: 3.3 Consensus size: 39
102074043 GGACTAAGAT
* * *
102074053 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
102074093 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
102074133 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
102074172 CCGAAGGCATT
1 CCGAAGGCATT
102074183 TGAACGAGGA
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 38 0.47
40 43 0.53
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:102088961 original size:27 final size:27
Alignment explanation
Indices: 102088931--102089108 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
102088921 ATATTGAGTC
* *
102088931 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
102088958 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
102088985 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
102089013 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
102089040 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
102089067 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
102089094 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
102089109 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:102097054 original size:27 final size:27
Alignment explanation
Indices: 102097024--102097201 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
102097014 ATATTGAGTC
* * * *
102097024 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
102097051 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
102097078 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
102097106 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
102097133 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
102097160 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
102097187 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
102097202 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:102097163 original size:82 final size:81
Alignment explanation
Indices: 102097045--102097200 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
102097035 TGCTATATAA
* *
102097045 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
102097110 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
102097127 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
102097191 CACTTAGTGC
65 CACTTAGTGC
102097201 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:102105123 original size:21 final size:20
Alignment explanation
Indices: 102105099--102105138 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
102105089 CATGTATTTT
102105099 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
102105120 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
102105139 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:102105146 original size:20 final size:21
Alignment explanation
Indices: 102105104--102105146 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
102105094 ATTTTAATGA
*
102105104 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
102105125 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
102105145 TT
1 TT
102105147 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:102115535 original size:17 final size:17
Alignment explanation
Indices: 102115513--102115547 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
102115503 ATCACCTACC
102115513 ACTAACACCACCCAAGA
1 ACTAACACCACCCAAGA
102115530 ACTAACACCACCCAAGA
1 ACTAACACCACCCAAGA
102115547 A
1 A
102115548 TGAAAGCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.40, G:0.06, T:0.06
Consensus pattern (17 bp):
ACTAACACCACCCAAGA
Found at i:102119408 original size:29 final size:29
Alignment explanation
Indices: 102119376--102119434 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
102119366 AAAACAAAGA
102119376 ATAAACTAAAAGTAAATCTAAATCCTAAT
1 ATAAACTAAAAGTAAATCTAAATCCTAAT
* *
102119405 ATAAACTGAAAGTAAATCTCAATCCTAAT
1 ATAAACTAAAAGTAAATCTAAATCCTAAT
102119434 A
1 A
102119435 AAAGAGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.15, G:0.05, T:0.27
Consensus pattern (29 bp):
ATAAACTAAAAGTAAATCTAAATCCTAAT
Found at i:102119846 original size:23 final size:23
Alignment explanation
Indices: 102119816--102119864 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
102119806 CATAGTGACC
102119816 AATATTGGTTTAGAACGCATTTT
1 AATATTGGTTTAGAACGCATTTT
*
102119839 AATATTGGTTTAGAATGCATTTT
1 AATATTGGTTTAGAACGCATTTT
102119862 AAT
1 AAT
102119865 GGTATCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.45
Consensus pattern (23 bp):
AATATTGGTTTAGAACGCATTTT
Found at i:102131246 original size:40 final size:40
Alignment explanation
Indices: 102131216--102131401 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
102131206 GCTACTCGTT
* *
102131216 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
102131256 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
102131296 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
102131336 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
102131377 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
102131402 CATCGTTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:102138997 original size:48 final size:48
Alignment explanation
Indices: 102138933--102139170 Score: 225
Period size: 48 Copynumber: 5.0 Consensus size: 48
102138923 GGGTTATTGC
* * *
102138933 GATCCCGTATAGGACCATATCTGGGATATGGCATCGGCATCGATGTGA
1 GATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
* * * * *
102138981 GATCCTATATAAGACCATGTCTGGGACATGGCATCAGCATC-ATTATAA
1 GATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGA
* ** * *
102139029 GA-CCCTATATAAGACCACATCTGGGACCTGGCATCGACGTCG-TATGA
1 GATCCC-ATATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
* * * * **
102139076 GGTCCCGTATAAGACTACATCTGGGATATGGCATCGGCGCCGAGT-TGA
1 GATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGA
* *
102139124 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCG-TATGA
1 GATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
102139171 TATGTATGAG
Statistics
Matches: 152, Mismatches: 31, Indels: 15
0.77 0.16 0.08
Matches are distributed among these distances:
46 1 0.01
47 41 0.27
48 109 0.72
49 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (48 bp):
GATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
Found at i:102139156 original size:95 final size:96
Alignment explanation
Indices: 102138940--102139170 Score: 218
Period size: 95 Copynumber: 2.4 Consensus size: 96
102138930 TGCGATCCCG
* * * * **
102138940 TATAGGACCATATCTGGGATATGGCATCGGCATCGATGTGAGATCCTATATAAGACCATGTCTGG
1 TATAAGACCATATCTGGGATATGGCATCGACATCGATATGAGATCCCATATAAGACCACATCTGG
* *
102139005 GACATGGCATCAGCATCATTATAAGACCCTA
66 GACATGGCATCAGCACCAGTATAAGACCCTA
* ** * * * *
102139036 TATAAGACCACATCTGGGACCTGGCATCGACGTCG-TATGAGGTCCCGTATAAGACTACATCTGG
1 TATAAGACCATATCTGGGATATGGCATCGACATCGATATGAGATCCCATATAAGACCACATCTGG
* * * *
102139100 GATATGGCATCGGCGCCGAGT-TGAGATCCC-A
66 GACATGGCATCAGCACC-AGTATAAGA-CCCTA
* * *
102139131 TGTAAGACCATATCTGGGATATGGCATTGGCATCG-TATGA
1 TATAAGACCATATCTGGGATATGGCATCGACATCGATATGA
102139171 TATGTATGAG
Statistics
Matches: 107, Mismatches: 26, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
95 73 0.68
96 34 0.32
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (96 bp):
TATAAGACCATATCTGGGATATGGCATCGACATCGATATGAGATCCCATATAAGACCACATCTGG
GACATGGCATCAGCACCAGTATAAGACCCTA
Found at i:102150057 original size:47 final size:47
Alignment explanation
Indices: 102150003--102150338 Score: 438
Period size: 47 Copynumber: 7.1 Consensus size: 47
102149993 TTAGGATTTT
** * * *
102150003 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
102150050 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* * * *
102150101 ATGCGATGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
102150148 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
102150195 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
102150242 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * *
102150289 ATGTGATGAATGTGAACATATATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
102150336 ATG
1 ATG
102150339 CGAAATGTGT
Statistics
Matches: 261, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 216 0.83
49 11 0.04
51 34 0.13
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:102150448 original size:46 final size:46
Alignment explanation
Indices: 102150312--102150448 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
102150302 GAACATATAT
* * *
102150312 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAGATGTGTATGAGATGG
* *
102150358 ATATGAGGTAAAGCCGAATGGCTAATGCGAGACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAGATGTGTATGAGATGG
* * *
102150404 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAGATGTGTATGAGATG
102150449 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAGATGTGTATGAGATGG
Found at i:102150661 original size:37 final size:37
Alignment explanation
Indices: 102150631--102150741 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
102150621 GTGGTGACTA
102150631 TGTCCGGGTAAGACTCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACTCGATGACTACGTGTGGAGATTT
*
102150668 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACTCGATGACTACGTGTGGAGATTT
* * *
102150705 TGTTCGGGTAAGACTCGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACTCGATGACTACGTGTGGAGATTT
102150742 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.31
Consensus pattern (37 bp):
TGTCCGGGTAAGACTCGATGACTACGTGTGGAGATTT
Found at i:102152356 original size:15 final size:15
Alignment explanation
Indices: 102152336--102152366 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
102152326 AGTGATTAGC
*
102152336 TCCTTATTTCTTTCA
1 TCCTTATTGCTTTCA
102152351 TCCTTATTGCTTTCA
1 TCCTTATTGCTTTCA
102152366 T
1 T
102152367 AAACAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.26, G:0.03, T:0.58
Consensus pattern (15 bp):
TCCTTATTGCTTTCA
Found at i:102156704 original size:13 final size:13
Alignment explanation
Indices: 102156686--102156712 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
102156676 GAAAATAGCT
102156686 ATGTTGATGATGA
1 ATGTTGATGATGA
102156699 ATGTTGATGATGA
1 ATGTTGATGATGA
102156712 A
1 A
102156713 GTTATTGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.37
Consensus pattern (13 bp):
ATGTTGATGATGA
Found at i:102160668 original size:84 final size:85
Alignment explanation
Indices: 102160492--102160672 Score: 217
Period size: 84 Copynumber: 2.2 Consensus size: 85
102160482 ATAACCTGAT
* * *
102160492 TTCATCACCGGCAATAAGCCTGCTAGACCTTTAAGTCCGATATCAGTTCATCGGCATTATGCCTG
1 TTCATCACCGGCAATAAGCCTACTAGACCTTTAAGTCCGATATCAGTTCACCGGCATTACGCCTG
**
102160557 CTAGGCTCGGAGCCCGATAA
66 CTAGGCTCAAAGCCCGATAA
* * * *
102160577 -T-ATTCACCGGC-TTAAAGCTTACTAGACCTTTAAGTCCGATATCATTTCACCGGTATTACGCC
1 TTCA-TCACCGGCAAT-AAGCCTACTAGACCTTTAAGTCCGATATCAGTTCACCGGCATTACGCC
* *
102160639 TGTTAGGCTCAAAGCTCGA-AA
64 TGCTAGGCTCAAAGCCCGATAA
102160660 TTCATCACCGGCA
1 TTCATCACCGGCA
102160673 CAAGGCCTGC
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
83 4 0.05
84 75 0.94
85 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (85 bp):
TTCATCACCGGCAATAAGCCTACTAGACCTTTAAGTCCGATATCAGTTCACCGGCATTACGCCTG
CTAGGCTCAAAGCCCGATAA
Found at i:102175083 original size:34 final size:34
Alignment explanation
Indices: 102175019--102175083 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 34
102175009 TTACCGTTGC
* * * *
102175019 TGTAATGGGTTAAGGCCCACACTGATACTGATAT
1 TGTAATGGGCTAAAGCCCACACTAAAACTGATAT
102175053 TGTAATGGGCTAAAGCCCTA-ACTAAAACTGA
1 TGTAATGGGCTAAAGCCC-ACACTAAAACTGA
102175084 ACTGTTACTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
34 25 0.96
35 1 0.04
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (34 bp):
TGTAATGGGCTAAAGCCCACACTAAAACTGATAT
Found at i:102175456 original size:22 final size:22
Alignment explanation
Indices: 102175428--102175477 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
102175418 CCACGTTCAT
102175428 GCAACATACTTTAAAAGCTTAC
1 GCAACATACTTTAAAAGCTTAC
* *
102175450 GCAACATATTTTAAAAGCTTCC
1 GCAACATACTTTAAAAGCTTAC
102175472 GCAACA
1 GCAACA
102175478 AACAATGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (22 bp):
GCAACATACTTTAAAAGCTTAC
Found at i:102179552 original size:15 final size:15
Alignment explanation
Indices: 102179529--102179562 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
102179519 ACGTGGTCTT
*
102179529 ACATGTATCGAAGTC
1 ACATATATCGAAGTC
102179544 ACATATATCGAAGTC
1 ACATATATCGAAGTC
102179559 ACAT
1 ACAT
102179563 GTCGATGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (15 bp):
ACATATATCGAAGTC
Found at i:102179740 original size:112 final size:112
Alignment explanation
Indices: 102179543--102179888 Score: 489
Period size: 112 Copynumber: 3.1 Consensus size: 112
102179533 GTATCGAAGT
* * *
102179543 CACATATATCGAAGTCACATGTCGATGCTAATGTATTAAACGTGGTCTTACTCGCACACATATAT
1 CACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT
* * * * * *
102179608 CGGAATCACAAATCGATGCCACT-TTCTCAGACAG-GTTCTTACTCGCA
66 CGGAATCACATATCGATGCCAATGTACT-AAAC-GTGGTCTTACTCACA
* *
102179655 CACATATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTAGCACACATATAT
1 CACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT
*
102179720 CGGAATCACATATCGATGCCAATGTAGTAAACGTGGTCTTACTCACA
66 CGGAATCACATATCGATGCCAATGTACTAAACGTGGTCTTACTCACA
* *
102179767 CACATATATCGAAGTCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCTCACACATATAT
1 CACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT
* * * * *
102179832 CAGAATCATATATCGATGCTAACGTATTAAACGTGGTCTTACTCACA
66 CGGAATCACATATCGATGCCAATGTACTAAACGTGGTCTTACTCACA
102179879 CACATATATC
1 CACATATATC
102179889 AATGCCATGA
Statistics
Matches: 211, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
111 1 0.00
112 208 0.99
113 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (112 bp):
CACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT
CGGAATCACATATCGATGCCAATGTACTAAACGTGGTCTTACTCACA
Found at i:102179889 original size:56 final size:55
Alignment explanation
Indices: 102179543--102179888 Score: 439
Period size: 56 Copynumber: 6.2 Consensus size: 55
102179533 GTATCGAAGT
* * * *
102179543 CACATATATCGAAGTCACATGTCGATGCTAATGTATTAAACGTGGTCTTACTCGCA
1 CACATATATCGAA-TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACA
* * * * *
102179599 CACATATATCGGAATCACAAATCGATGCC-AC-TTTCTCAGACAG-GTTCTTACTCGCA
1 CACATATATC-GAATCACATATCGATGCCAACGTAT-T-AAAC-GTGGTCTTACTCACA
102179655 CACATATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACT-AGCA
1 CACATATATCG-AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCA-CA
* *
102179711 CACATATATCGGAATCACATATCGATGCCAATGTAGTAAACGTGGTCTTACTCACA
1 CACATATATC-GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACA
* *
102179767 CACATATATCGAAGTCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCTCA
1 CACATATATCGAA-TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACA
* *
102179823 CACATATATCAGAATCATATATCGATGCTAACGTATTAAACGTGGTCTTACTCACA
1 CACATATATC-GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACA
102179879 CACATATATC
1 CACATATATC
102179889 AATGCCATGA
Statistics
Matches: 255, Mismatches: 22, Indels: 26
0.84 0.07 0.09
Matches are distributed among these distances:
54 2 0.01
55 7 0.03
56 232 0.91
57 12 0.05
58 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (55 bp):
CACATATATCGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACA
Found at i:102181043 original size:13 final size:13
Alignment explanation
Indices: 102181025--102181050 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102181015 ACAAACAATA
102181025 AAATTTTCACACG
1 AAATTTTCACACG
102181038 AAATTTTCACACG
1 AAATTTTCACACG
102181051 TATAATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:102186297 original size:56 final size:56
Alignment explanation
Indices: 102186237--102186595 Score: 512
Period size: 56 Copynumber: 6.4 Consensus size: 56
102186227 TCCCAAACAG
102186237 GGTCTTACTCGCACACATATATC-GAAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAA-TCACATATCGATGCCAACGTATTAAACGT
* * *
102186293 GGTCTTACTCGCACACATATATCGGAATCACAAATCGATGCC-AC-TTTCTCAGACAG-
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTAT-T-AAAC-GT
* *
102186349 GTTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * *
102186405 GGTCTTACTAGCACACATATATCGGAATCACATATCGATGCCAATGTAGTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * *
102186461 GGTCTTACTCACACACATATATC-GAAGTCATATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATCGGAA-TCACATATCGATGCCAACGTATTAAACGT
* *
102186517 GGTCTTACTCTCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
102186573 GGTCTTACTCACACACATATATC
1 GGTCTTACTCGCACACATATATC
102186596 AATTCCATGA
Statistics
Matches: 271, Mismatches: 23, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
54 2 0.01
55 7 0.03
56 250 0.92
57 10 0.04
58 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:102192602 original size:43 final size:43
Alignment explanation
Indices: 102192393--102192606 Score: 204
Period size: 43 Copynumber: 5.0 Consensus size: 43
102192383 CATAAAGCTC
* * * * *
102192393 ATACAATGCC-ATATCCCAGATATGGTCTTTCATGTTATCAC-
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
* * * * * **
102192434 ATATCGATGCCACTGTCCCAGACAGGGTCTTGCACGAAAT-TGA
1 ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
* * *
102192477 ATAACGATGCCAATGTCCCATACATGGTCTTACACG-AAAC-CGA
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCAC-A
102192520 ATAACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
* *
102192564 ATACAATGCCAATGTTCCAGACATGGTCTTACATGTAATCACA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
102192607 TCTCGGTAAC
Statistics
Matches: 143, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
41 3 0.02
42 8 0.06
43 124 0.87
44 7 0.05
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
Found at i:102194619 original size:35 final size:35
Alignment explanation
Indices: 102194574--102194645 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
102194564 GATCAACCTG
102194574 TATACATTCCACTGAAACAATGTGCCCCAAAAATC
1 TATACATTCCACTGAAACAATGTGCCCCAAAAATC
*
102194609 TATACCTTCCACTGAAACAATGTGCCCCAAAAATC
1 TATACATTCCACTGAAACAATGTGCCCCAAAAATC
102194644 TA
1 TA
102194646 ACTTCTCGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.29, G:0.08, T:0.24
Consensus pattern (35 bp):
TATACATTCCACTGAAACAATGTGCCCCAAAAATC
Found at i:102206593 original size:13 final size:13
Alignment explanation
Indices: 102206573--102206634 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 13
102206563 TTAGGATGAT
102206573 TTTA-TTTTAATA
1 TTTATTTTTAATA
102206585 TTTATTTTTAATTA
1 TTTATTTTTAA-TA
*
102206599 TTGTA-TTTAAATA
1 TT-TATTTTTAATA
102206612 -TTATTTTTAA-A
1 TTTATTTTTAATA
*
102206623 TATATTTATTAA
1 TTTATTT-TTAA
102206635 GAATTTAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
11 3 0.07
12 15 0.37
13 12 0.29
14 9 0.22
15 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (13 bp):
TTTATTTTTAATA
Found at i:102206632 original size:27 final size:26
Alignment explanation
Indices: 102206573--102206632 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 26
102206563 TTAGGATGAT
*
102206573 TTTATTTTAATATTTATTTTTAATTA
1 TTTATTTAAATATTTATTTTTAATTA
102206599 TTGTATTTAAATA-TTATTTTTAAATATA
1 TT-TATTTAAATATTTATTTTT-AAT-TA
102206627 TTTATT
1 TTTATT
102206633 AAGAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 10 0.33
27 16 0.53
28 4 0.13
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (26 bp):
TTTATTTAAATATTTATTTTTAATTA
Found at i:102207823 original size:22 final size:22
Alignment explanation
Indices: 102207795--102207839 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
102207785 TCAACAAAAG
102207795 TTAATTTATTATTAAAAACATA
1 TTAATTTATTATTAAAAACATA
102207817 TTAATTTATTATTAAAAACATA
1 TTAATTTATTATTAAAAACATA
102207839 T
1 T
102207840 ACTTTAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
TTAATTTATTATTAAAAACATA
Found at i:102209794 original size:9 final size:8
Alignment explanation
Indices: 102209775--102209882 Score: 55
Period size: 9 Copynumber: 12.9 Consensus size: 8
102209765 ATATGTATGC
102209775 TAATATGAA
1 TAATAT-AA
102209784 TAATGATAA
1 TAAT-ATAA
102209793 TAATACTAA
1 TAATA-TAA
102209802 TAATAATAA
1 TAAT-ATAA
*
102209811 -AATACGAA
1 TAATA-TAA
*
102209819 GAAGTATATA
1 TAA-TATA-A
102209829 TAATATAA
1 TAATATAA
102209837 TAATATTAA
1 TAATA-TAA
*
102209846 -AATACAA
1 TAATATAA
102209853 TAAT-TAA
1 TAATATAA
102209860 -AA-ATAA
1 TAATATAA
*
102209866 TATTATATA
1 TAATATA-A
102209875 TAAATATA
1 T-AATATA
102209883 TACAATATTC
Statistics
Matches: 78, Mismatches: 7, Indels: 27
0.70 0.06 0.24
Matches are distributed among these distances:
6 5 0.06
7 6 0.08
8 22 0.28
9 32 0.41
10 13 0.17
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (8 bp):
TAATATAA
Found at i:102211952 original size:127 final size:127
Alignment explanation
Indices: 102211717--102212027 Score: 550
Period size: 127 Copynumber: 2.4 Consensus size: 127
102211707 CAACTCATTT
* * **
102211717 CTCAGCGTGTCCTGAGGCTCAACTCATTTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATT
1 CTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATT
* *
102211782 AAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTAC
66 AAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTAC
102211844 CTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATT
1 CTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATT
*
102211909 AAAGGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTAC
66 AAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTAC
*
102211971 CTCATCGTATCCTGAGGCTCAACTCACCTCTAACAATATGAGTTGATTTTGAAAAAG
1 CTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAG
102212028 AAATTGAAAA
Statistics
Matches: 176, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
127 176 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (127 bp):
CTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATT
AAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTAC
Found at i:102212129 original size:72 final size:71
Alignment explanation
Indices: 102211926--102212160 Score: 330
Period size: 72 Copynumber: 3.3 Consensus size: 71
102211916 TCAACCCACC
* *
102211926 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTC-ATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTGATT-TTGA-AAACAGAAATTGAAATTACCTCAAT-GTGTCTTGAGGCT
**
102211990 CAACTCACC
63 CAACTCATT
** * * *
102211999 TCTAACAATATGAGTTGATTTTGAAAA-AGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAA
1 TCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAA
102212063 CTCATT
66 CTCATT
*
102212069 TATCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTG-ATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCA
102212134 ACTCATT
65 ACTCATT
102212141 TCTCGCAATATGAGTTGATT
1 TCTCGCAATATGAGTTGATT
102212161 CTTTCAAAAA
Statistics
Matches: 143, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
70 48 0.34
71 17 0.12
72 60 0.42
73 18 0.13
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (71 bp):
TCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAA
CTCATT
Found at i:102212240 original size:88 final size:87
Alignment explanation
Indices: 102212091--102212336 Score: 280
Period size: 88 Copynumber: 2.8 Consensus size: 87
102212081 AGTTGAATTT
* * ** * **
102212091 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAACAAAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102212156 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTCAAAAACA-AA-AA
* * *
102212179 TGAAAACAAAAATGGAAAATACCTCGGTGTGACCTGGGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAAAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
102212244 TGATTTTTTTGAAAAACAGAAA
66 TGATTTCTTTCAAAAACAAAAA
* **
102212266 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAAAAATTGAAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
102212330 GAGTTGA
62 GAGTTGA
102212337 AATTAAAACA
Statistics
Matches: 134, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
87 7 0.05
88 73 0.54
89 14 0.10
90 40 0.30
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28
Consensus pattern (87 bp):
TGAAAACAAAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTCAAAAACAAAAA
Found at i:102212779 original size:86 final size:88
Alignment explanation
Indices: 102212632--102212797 Score: 203
Period size: 86 Copynumber: 1.9 Consensus size: 88
102212622 AAAATCTATT
* * *
102212632 GAAAATACCTCGGCGTATGACCTGAGGCTCCATTCACCTCTAGCAATATGAATTGACTTTTG-AA
1 GAAAATACCTCAGCG-ATGACCTGAGGCTCAACTCACCTCTAGCAATATGAATTGACTTTTGCAA
102212696 AACA-TAAATTGAAAAACAGAAATG
65 AACAGT-AATTGAAAAACAGAAATG
* * * * ** *
102212720 GAAAATACCTCAGC-ATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGGTTTTTGCCAA
1 GAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCTCTAGCAATATGAATTGACTTTTGCAAA
102212784 ACAGTAATTGAAAA
66 ACAGTAATTGAAAA
102212798 TACCTCAGCG
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
86 38 0.58
87 14 0.21
88 14 0.21
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (88 bp):
GAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCTCTAGCAATATGAATTGACTTTTGCAAA
ACAGTAATTGAAAAACAGAAATG
Found at i:102213188 original size:232 final size:222
Alignment explanation
Indices: 102212704--102213608 Score: 1083
Period size: 232 Copynumber: 4.0 Consensus size: 222
102212694 AAAACATAAA
* * * *
102212704 TTGAAAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * * * * *
102212769 GTTGGTTTTTGCCAAACAGTAATTGAAAATACCTCAGCGTGCCCCGACGCTCAACTCACCTCTTG
66 GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* * *
102212834 CAATATGAGTTGATTTAGAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGC
131 CAATATGAGTTGATTTTG-AAA-A-AC----AAA-A-AAATTGAAA-TTACCTC-A-ACGTG-TC
* *
102212898 C-AAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTT
183 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
102212937 TTG-AAAGTAGAATTTGAAAATACCTCGGCGTGCTCC-GAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATG
102213000 AGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
65 AGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* *
102213065 GCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGAAAATACCTCAACGTGTCTT
130 GCAATATGAGTTGA-TTTTGAAAAAC---AA---AA-A--AATTGAAATTACCTCAACGTGTCCT
*
102213130 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTC
185 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
** *
102213168 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
102213233 GTTGATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
66 GTTGA--TTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
102213297 AGCAATATGAGTTGATTTTGAAAAAC--AAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
129 CGCAATATGAGTTGATTTTGAAAAACAAAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAA
**
102213360 CTCATTTCTCGCAATATGAGTTGATTTTTT
194 CTCACCTCTCGCAATATGAGTTGA-TTTTT
* * * *
102213390 TTTACAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* **
102213454 GTTGA-TTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
66 GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
**** *
102213518 CAATATGAGTTGATTTT-TTTGACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
131 CAATATGAGTTGATTTTGAAAAACAA-AAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAAC
*
102213582 TCACCTCTAGCAATATGAGTTGATTTT
195 TCACCTCTCGCAATATGAGTTGATTTT
102213609 GAAAAACAAA
Statistics
Matches: 594, Mismatches: 60, Indels: 49
0.84 0.09 0.07
Matches are distributed among these distances:
218 7 0.01
219 65 0.11
220 4 0.01
221 168 0.28
222 9 0.02
223 1 0.00
224 2 0.00
229 3 0.01
230 3 0.01
231 48 0.08
232 193 0.32
233 85 0.14
234 6 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (222 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTGAAAAACAAAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTT
Found at i:102213372 original size:221 final size:218
Alignment explanation
Indices: 102213105--102213608 Score: 742
Period size: 221 Copynumber: 2.3 Consensus size: 218
102213095 ATTGAACAGG
* * *
102213105 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
* * *
102213170 GAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
66 GAAAA-CAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
* *
102213235 TGATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAG
130 TGA---TTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAG
102213299 CAATATGAGTTGA-TTTTGAAAAACAAA
192 CAATATGAGTTGATTTTTG-AAAACAAA
** *
102213326 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTCT
* * * *
102213391 TTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
65 TGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
** *
102213456 TGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
130 TGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAA
*
102213521 TATGAGTTGATTTTTTTGACAACAAA
195 TATGAGTTGA--TTTTTGAAAACAAA
*
102213547 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
102213609 GAAAAACAAA
Statistics
Matches: 256, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
218 5 0.02
219 61 0.24
220 4 0.02
221 172 0.67
222 14 0.05
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (218 bp):
AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
GAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
GATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTTGAAAACAAA
Found at i:102213386 original size:146 final size:146
Alignment explanation
Indices: 102213099--102213622 Score: 877
Period size: 146 Copynumber: 3.6 Consensus size: 146
102213089 ACATAAATTG
* * * * *
102213099 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-
* * * ** * **
102213164 TTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
65 -TT-TTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAAT
102213229 ATGAGTTGATTTTTTTGAC
128 ATGAGTTGATTTTTTTGAC
102213248 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
102213313 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
*
102213378 AGTTGATTTTTTTTTAC
131 AGTTGA-TTTTTTTGAC
102213395 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
102213460 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
102213525 AGTTGATTTTTTTGAC
131 AGTTGATTTTTTTGAC
*
102213541 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
102213606 TTTGAAAAACAAAAATT
66 TTTGAAAAACAAAAATT
102213623 AAAAGGCTTA
Statistics
Matches: 358, Mismatches: 16, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
146 152 0.42
147 147 0.41
149 59 0.16
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (146 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGATTTTTTTGAC
Found at i:102213745 original size:69 final size:69
Alignment explanation
Indices: 102213626--102213799 Score: 197
Period size: 69 Copynumber: 2.5 Consensus size: 69
102213616 AAAAATTAAA
* ** * * **
102213626 AGGCTTAACTCACTTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAACAAAAACTAAAAATACCTCAACGTGC
102213691 CCCG
66 CCCG
**** * *
102213695 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAATTAAAAATACCTCAACGTGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAACAAAAACTAAAAATACCTCAACGTGC
**
102213760 CTTG
66 CCCG
102213764 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
102213800 CCTTGGAAAG
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
68 1 0.01
69 88 0.99
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (69 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAACAAAAACTAAAAATACCTCAACGTGC
CCCG
Found at i:102217526 original size:70 final size:72
Alignment explanation
Indices: 102217196--102218062 Score: 1172
Period size: 70 Copynumber: 12.2 Consensus size: 72
102217186 TCAGCCTTTC
102217196 GAAAAACAGAAATTGAAATACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
102217260 G-TTTTT
66 GATTTTT
102217266 G-AAAACAG-AATTGAAAATACCTCAGCGTG-CCTGA-GCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102217327 TGATTTTT
65 TGATTTTT
* *
102217335 GAAAAAAATAAAAACAAATTGAAATACCTCA--G-G---TGAGGCTCAACTCACCT-TCGCAATA
1 G-----AA-AAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
102217393 TGAGTTGATTTTT
60 TGAGTTGATTTTT
*
102217406 G--AAACAGTAAATTTGAAAATACCTCGGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGA
1 GAAAAACAG-AAA-TTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
102217468 GTTGA-TTTT
63 GTTGATTTTT
102217477 GAAAAACA-AAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG-T
1 GAAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
102217540 GA-TTTT
66 GATTTTT
* *
102217546 GAAAAATAAAGAAATTGAAAATACCTCAACGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGA
1 G-AAAA-ACAGAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
102217610 GTTGATTTTT
63 GTTGATTTTT
*
102217620 G--AAACAGAAATTGAAATTACCTCA-TGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102217682 TGATTTTT
65 TGATTTTT
102217690 G--AAACAGAAATTGAAAATACCTCAGCGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102217752 TGATTTTT
65 TGATTTTT
102217760 GAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGA-GCTCAACTCACTCTCTCGCATATATGA
1 GAAAAACAGAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCAC-CTCTCGCA-ATATGA
102217824 GTTGATTTTT
63 GTTGATTTTT
**
102217834 -TTAAACAGAAATTGAAATTACCTCAGCGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102217897 TGA-TTTT
65 TGATTTTT
**
102217904 GAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102217969 TGATTTTTTT
65 TGA--TTTTT
* * *
102217979 TAACAA-AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
1 GAAAAACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102218043 TGA-TTTT
65 TGATTTTT
102218050 GAAAAACA-AAATT
1 GAAAAACAGAAATT
102218063 AAAAGGCTTA
Statistics
Matches: 725, Mismatches: 24, Indels: 95
0.86 0.03 0.11
Matches are distributed among these distances:
63 4 0.01
64 3 0.00
65 3 0.00
66 9 0.01
68 35 0.05
69 63 0.09
70 160 0.22
71 113 0.16
72 155 0.21
73 72 0.10
74 80 0.11
75 9 0.01
76 14 0.02
77 5 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (72 bp):
GAAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTT
Found at i:102217532 original size:142 final size:142
Alignment explanation
Indices: 102217196--102218062 Score: 1204
Period size: 142 Copynumber: 6.1 Consensus size: 142
102217186 TCAGCCTTTC
102217196 GAAAAACAGAAATTGAAATACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
102217260 G-TTTTTGAAAACAG-AATTGAAAATACCTCAGCGTG-CCTGA-GCTCAACTCACCTCTCGCAAT
66 GATTTTTG-AAACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAAT
102217321 ATGAGTTGATTTTT
129 ATGAGTTGATTTTT
* *
102217335 GAAAAAAATAAAAACAAATTGAAATACCTCA--G-G---TGAGGCTCAACTCACCT-TCGCAATA
1 G-----AA-AAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
102217393 TGAGTTGATTTTTGAAACAGTAAATTTGAAAATACCTCGGCGTGTCCGAGGCTCAACTCACCTCT
60 TGAGTTGATTTTTGAAACAG-AAA-TTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCT
102217458 CGCAATATGAGTTGA-TTTT
123 CGCAATATGAGTTGATTTTT
102217477 GAAAAACA-AAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG-T
1 GAAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
102217540 GA-TTTTGAAAAATAAAGAAATTGAAAATACCTCAACGTGTCTGAGGCTCAACTCACCTCTCGCA
66 GATTTTTG---AA-ACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCA
102217604 ATATGAGTTGATTTTT
127 ATATGAGTTGATTTTT
*
102217620 G--AAACAGAAATTGAAATTACCTCA-TGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
102217682 TGATTTTTGAAACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATA
65 TGATTTTTGAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATA
102217747 TGAGTTGATTTTT
130 TGAGTTGATTTTT
102217760 GAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGA-GCTCAACTCACTCTCTCGCATATATGA
1 GAAAAACAGAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCAC-CTCTCGCA-ATATGA
* * *
102217824 GTTGATTTTTTTAAACAGAAATTGAAATTACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCA
63 GTTGA-TTTTTGAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCA
102217889 ATATGAGTTGA-TTTT
127 ATATGAGTTGATTTTT
**
102217904 GAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
102217969 TGATTTTTTTTAACAAAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGC
65 TGA--TTTTTGAA-ACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGC
102218034 AATATGAGTTGA-TTTT
126 AATATGAGTTGATTTTT
102218050 GAAAAACA-AAATT
1 GAAAAACAGAAATT
102218063 AAAAGGCTTA
Statistics
Matches: 668, Mismatches: 19, Indels: 76
0.88 0.02 0.10
Matches are distributed among these distances:
135 16 0.02
136 4 0.01
137 3 0.00
138 1 0.00
139 22 0.03
140 94 0.14
141 29 0.04
142 164 0.25
143 87 0.13
144 74 0.11
145 130 0.19
146 44 0.07
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (142 bp):
GAAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTT
Found at i:102218210 original size:67 final size:69
Alignment explanation
Indices: 102218066--102218237 Score: 215
Period size: 67 Copynumber: 2.5 Consensus size: 69
102218056 CAAAATTAAA
* * ** * **
102218066 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAACATAAACTAAAAATACCTCAACGTGC
102218131 CCCG
66 CCCG
* *
102218135 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAA-A-AAATTAAAAATACCTCAACGTGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAACATAAACTAAAAATACCTCAACGTGC
**
102218198 CTTG
66 CCCG
102218202 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
102218238 CCTTGGAAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
66 1 0.01
67 55 0.60
68 1 0.01
69 34 0.37
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (69 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAACATAAACTAAAAATACCTCAACGTGC
CCCG
Found at i:102230521 original size:3 final size:3
Alignment explanation
Indices: 102230506--102230597 Score: 50
Period size: 3 Copynumber: 31.3 Consensus size: 3
102230496 TGCTAATATG
* * ** *
102230506 AAT AAT GAT AAT AAT ACT AAT AAT AAT AAT AA- AAT ACG AAG AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* * *
102230551 -AT ATAT AAT -AT AAT AAT AAT ATT AA- AAT -AC AAT AATT AAA AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
102230594 AAT A
1 AAT A
102230598 TTATATATAA
Statistics
Matches: 67, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
2 8 0.12
3 53 0.79
4 6 0.09
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:102230610 original size:26 final size:26
Alignment explanation
Indices: 102230550--102230614 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
102230540 TACGAAGAAG
* *
102230550 TATATATAATATAATAATAATATTAA
1 TATAAATAATATAAAAATAATATTAA
*
102230576 AATACAATAAT-TAAAAATAATATTATA
1 TATA-AATAATATAAAAATAATATTA-A
102230603 TATAAAT-ATATA
1 TATAAATAATATA
102230615 CAATATTCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
25 2 0.06
26 21 0.66
27 9 0.28
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
TATAAATAATATAAAAATAATATTAA
Found at i:102236731 original size:177 final size:177
Alignment explanation
Indices: 102236164--102237347 Score: 1337
Period size: 177 Copynumber: 6.7 Consensus size: 177
102236154 AATAGGACTG
* * * * *
102236164 GTGGCTCAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCCTCGATGTACTCCTC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCAC
* * *
102236229 CACTGCTTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCTTTGCTACCTCAGGAAGATAAGA
66 TACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
102236293 CTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCC-
131 CTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCA
* * * *
102236339 GATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCCTCGATCTGCTCCA
1 G-TGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCA
* * *
102236404 CTACTTCTTAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTA---C-----GATAAG
65 CTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAG
* ** * * **
102236461 ACTACAATCACCAACCTGCTCTCTTGCTACCTTAAAGAGATAAGGCTG
130 ACTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCA
* * * *
102236509 GTAGCTCAAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTTGATCTACTCCAC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCAC
*
102236574 TACTGCTTAGGGAGATAAGATATTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
66 TACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
* *
102236639 CTACCATCTTCAACCTACTCTCTTGTTACCTCAGAGAGATAAGGCCA
131 CTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCA
* *
102236686 GTGGCTAAAATCTGCTCCATTGCCTG-TACATGGAGATACGATTCGCCATCTTCGATCTACTCCG
1 GTGGCTAAAATCTGCTCCATTGCC-GATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCA
*
102236750 CTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAG
65 CTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAG
* * * * * * * *
102236815 ACTA-TATCTTGAACCTGCTC-CACTACAACTTCAGGGAGATAAGGCTA
130 ACTACCATCTTCAACCTGCTCTC-TTGCTACCTCAGAGAGATAAGGCCA
* * * * * * * * *
102236862 GTGACTTAAATCTGCTCCATTACCGGTACATAGAGATAAGATTTGTCGA-CTTTGACCTACTCCA
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCG-CCATCTTCGATCTACTCCA
* ** *
102236926 CTGCAACTTCAGGGAAATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAA
65 CTACTGCTT-AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAA
* *
102236991 GACTATCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCA
129 GACTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCA
* * *
102237040 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCGC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCAC
* * ** *
102237105 TACTGCTTAAGG-GATAAGATCTTTCAATCTTCAGTCTGCTTTCTTGCTATGTCAGAAAGATAAG
66 TACTGCTTAGGGAGATAAGATC-TTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAG
* * * * * * * **
102237169 ACTA-TATCTTGAACCTGCTC-CACTGCAACTTTAGGGAGATAAGGCTG
130 ACTACCATCTTCAACCTGCTCTC-TTGCTACCTCAGAGAGATAAGGCCA
* * * ** * * **
102237216 GTGACTTAAATCTGCTCCATTGCCTG-TACATGGAGATAAGATTCGTCGCCTTTGGTCTGTTCCA
1 GTGGCTAAAATCTGCTCCATTGCC-GATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCA
* * * * * * * *
102237280 CTACTGTTTAGGGAAATAAGACCTGCAATCCTCAGTCT-ATTCCACTG-TAACCTCAGGGAGATA
65 CTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCC-TTGCT-ACCTCAGGAAGATA
102237343 AGACT
128 AGACT
102237348 TGTCTATTGA
Statistics
Matches: 850, Mismatches: 134, Indels: 49
0.82 0.13 0.05
Matches are distributed among these distances:
169 149 0.18
170 1 0.00
172 1 0.00
174 1 0.00
175 8 0.01
176 288 0.34
177 313 0.37
178 88 0.10
179 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (177 bp):
GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCAC
TACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
CTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCA
Found at i:102237011 original size:44 final size:45
Alignment explanation
Indices: 102236938--102237035 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 45
102236928 GCAACTTCAG
**
102236938 GGAA-ATAAGATCTTCAATCTTCAGTCTGCT-TCCTTGCTACCTCA
1 GGAAGATAAGATCTTCAATCTTCAACCTGCTCT-CTTGCTACCTCA
102236982 GGAAGATAAGA-CTATC-ATCTTCAACCTGCTCTCTTGCTACCTCA
1 GGAAGATAAGATCT-TCAATCTTCAACCTGCTCTCTTGCTACCTCA
102237026 -GAGAGATAAG
1 GGA-AGATAAG
102237036 GTCAGTGGCT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
43 2 0.04
44 37 0.77
45 9 0.19
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (45 bp):
GGAAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCA
Found at i:102237030 original size:354 final size:349
Alignment explanation
Indices: 102236161--102237347 Score: 1488
Period size: 354 Copynumber: 3.4 Consensus size: 349
102236151 GGAAATAGGA
* * * * * * * **
102236161 CTGGTGGCTCAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC-ACCATCCTCGATGTACT
1 CTGGTGACTTAAATCTGCTCCATTGCCGGTACATGGAGATAAGATTCGTCGA-CTTTGACCTACT
* * ** *
102236225 CCTCCACTGCTTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCTTTGCTACCTCAGGAAGAT
65 CCACTACAACTTAGGGAAATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGAT
*
102236289 AAGACTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCC-GATGGCTGAAATCT
130 AAGACTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCAG-TGGCTAAAATCT
* * * *
102236353 GCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCCTCGATCTGCTCCACTACTTCTTAAGGA
194 GCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAAGGA
* ***
102236418 GATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTA-C----GATAAGACTACAATCACCAACCT
259 GATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTATCAGAAGATAAGACTA-TATCTTGAACCT
* **
102236478 GCTCTCTTGCTAC--CTTAAAGAGATAAGG
323 GCTC-C--ACTACAACTTAGGGAGATAAGG
* * * * *
102236506 CTGGT-AGCTCAAATCTACTCCATTGCCGATACATGGAGATAAGATTCG-CCATCTTTGATCTAC
1 CTGGTGA-CTTAAATCTGCTCCATTGCCGGTACATGGAGATAAGATTCGTCGA-CTTTGACCTAC
** * *
102236569 TCCACTACTGCTTAGGGAGATAAGATATTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGA
64 TCCACTACAACTTAGGGAAATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGA
* *
102236634 TAAGACTACCATCTTCAACCTACTCTCTTGTTACCTCAGAGAGATAAGGCCAGTGGCTAAAATCT
129 TAAGACTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCAGTGGCTAAAATCT
* * *
102236699 GCTCCATTGCCTG-TACATGGAGATACGATTCGCCATCTTCGATCTACTCCGCTACTGCTTAGGG
194 GCTCCATTGCC-GATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAAGG
*
102236763 AGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTATATCTTGAA
258 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTA--TC-AGAAGATAAGACTATATCTTGAA
102236828 CCTGCTCCACTACAACTTCAGGGAGATAAGG
320 CCTGCTCCACTACAACTT-AGGGAGATAAGG
* * * *
102236859 CTAGTGACTTAAATCTGCTCCATTACCGGTACATAGAGATAAGATTTGTCGACTTTGACCTACTC
1 CTGGTGACTTAAATCTGCTCCATTGCCGGTACATGGAGATAAGATTCGTCGACTTTGACCTACTC
*
102236924 CACTGCAACTTCAGGGAAATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGAT
66 CACTACAACTT-AGGGAAATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGAT
* *
102236989 AAGACTATCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCAGTGGCTAAAATCTG
130 AAGACTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCAGTGGCTAAAATCTG
*
102237054 CTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCGCTACTGCTTAAGG-G
195 CTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAAGGAG
102237118 ATAAGATCTTTCAATCTTCAGTCTGCTTTCTTGCTATGTCAGAAAGATAAGACTATATCTTGAAC
260 ATAAGATC-TTCAATCTTCAGTCTGCTTTCTTGCTA--TCAG-AAGATAAGACTATATCTTGAAC
*
102237183 CTGCTCCACTGCAACTTTAGGGAGATAAGG
321 CTGCTCCACTACAAC-TTAGGGAGATAAGG
* * ** **
102237213 CTGGTGACTTAAATCTGCTCCATTGCCTGTACATGGAGATAAGATTCGTCGCCTTTGGTCTGTTC
1 CTGGTGACTTAAATCTGCTCCATTGCCGGTACATGGAGATAAGATTCGTCGACTTTGACCTACTC
*** * * * * * *
102237278 CACTACTGTTTAGGGAAATAAGACCTGCAATCCTCAGTCT-ATTCCACTG-TAACCTCAGGGAGA
66 CACTACAACTTAGGGAAATAAGATCTTCAATCTTCAGTCTGCTTCC-TTGCT-ACCTCAGGAAGA
102237341 TAAGACT
129 TAAGACT
102237348 TGTCTATTGA
Statistics
Matches: 743, Mismatches: 74, Indels: 42
0.86 0.09 0.05
Matches are distributed among these distances:
345 74 0.10
346 192 0.26
347 2 0.00
349 1 0.00
350 4 0.01
352 9 0.01
353 139 0.19
354 320 0.43
355 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (349 bp):
CTGGTGACTTAAATCTGCTCCATTGCCGGTACATGGAGATAAGATTCGTCGACTTTGACCTACTC
CACTACAACTTAGGGAAATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATA
AGACTACCATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCAGTGGCTAAAATCTGC
TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAAGGAGA
TAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTATCAGAAGATAAGACTATATCTTGAACCTGCT
CCACTACAACTTAGGGAGATAAGG
Found at i:102237604 original size:64 final size:64
Alignment explanation
Indices: 102237502--102237948 Score: 741
Period size: 64 Copynumber: 7.0 Consensus size: 64
102237492 TCATGTATCT
* * * *
102237502 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAAATATG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* *
102237566 ATGCTTATGTCAAATAATTAGGATGTTATGATCGAAATGAATCAAATGCTTCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
*
102237630 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTTCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* *
102237694 ATACTTATGTCAAATAATTAAGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * * *
102237758 ATGCTCATGTCAAATAATTAGGATGTTATGATAGAAATGAATCGAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
102237822 ATGCTCATGTCAAATAATTAGAATGCTATGATCGAAATGAATCAAATGCTCTTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
*
102237886 ATGCTCATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGT
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGT
102237949 ATTATGAATG
Statistics
Matches: 360, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 360 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:102239048 original size:6 final size:6
Alignment explanation
Indices: 102239039--102239089 Score: 70
Period size: 6 Copynumber: 8.7 Consensus size: 6
102239029 TGGCCTCTCC
*
102239039 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTTA TTATT-- TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TT-TTAA TTTTAA
102239086 TTTT
1 TTTT
102239090 TCTTTTTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
6 35 0.85
7 2 0.05
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (6 bp):
TTTTAA
Found at i:102239096 original size:15 final size:15
Alignment explanation
Indices: 102239063--102239112 Score: 64
Period size: 15 Copynumber: 3.2 Consensus size: 15
102239053 TTAATTTTAA
*
102239063 TTTTAATTTTTATTATT
1 TTTTAATTTTT-CT-TT
102239080 TTTTAATTTTTCTTT
1 TTTTAATTTTTCTTT
*
102239095 TTTTTATTTTTCTTT
1 TTTTAATTTTTCTTT
102239110 TTT
1 TTT
102239113 ATTTCAATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
15 19 0.61
16 1 0.03
17 11 0.35
ACGTcount: A:0.14, C:0.04, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTAATTTTTCTTT
Found at i:102239112 original size:17 final size:17
Alignment explanation
Indices: 102239063--102239134 Score: 76
Period size: 17 Copynumber: 4.2 Consensus size: 17
102239053 TTAATTTTAA
* *
102239063 TTTTAATTTTTATTATT
1 TTTTAATTTTTCTTTTT
102239080 TTTTAATTTTTC-TTTT
1 TTTTAATTTTTCTTTTT
102239096 TTTT-ATTTTTCTTTTT
1 TTTTAATTTTTCTTTTT
* *
102239112 TATTTCAATCTCTCTTTTT
1 T-TTT-AATTTTTCTTTTT
102239131 TTTT
1 TTTT
102239135 TAAGGTCTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
15 7 0.15
16 12 0.26
17 14 0.30
18 3 0.06
19 11 0.23
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTAATTTTTCTTTTT
Found at i:102239112 original size:23 final size:23
Alignment explanation
Indices: 102239057--102239105 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
102239047 TTAATTTTAA
**
102239057 TTTTAATTTTAATTTTTATTATT
1 TTTTAATTTTTCTTTTTATTATT
*
102239080 TTTTAATTTTTCTTTTTTTTATT
1 TTTTAATTTTTCTTTTTATTATT
102239103 TTT
1 TTT
102239106 CTTTTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTTAATTTTTCTTTTTATTATT
Found at i:102240612 original size:25 final size:25
Alignment explanation
Indices: 102240575--102240634 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
102240565 GAAAGAATAT
* *
102240575 AAAAAGAACGAAAGAATATTTACTC
1 AAAAAGAATGAAAGAATATTTACTA
*
102240600 AAAAGGAATGAAAGAATATTTACTA
1 AAAAAGAATGAAAGAATATTTACTA
102240625 AAAAAGAATG
1 AAAAAGAATG
102240635 CATTTCATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.58, C:0.07, G:0.15, T:0.20
Consensus pattern (25 bp):
AAAAAGAATGAAAGAATATTTACTA
Found at i:102245554 original size:23 final size:23
Alignment explanation
Indices: 102245520--102245565 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
102245510 CGAAGGTGAA
*
102245520 AACCTCATGAAAGCATAGTTTCT
1 AACCTCACGAAAGCATAGTTTCT
102245543 AACCTCACGAAAGCATAGTTTCT
1 AACCTCACGAAAGCATAGTTTCT
102245566 TACTCCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (23 bp):
AACCTCACGAAAGCATAGTTTCT
Found at i:102249234 original size:3 final size:3
Alignment explanation
Indices: 102249217--102249327 Score: 84
Period size: 3 Copynumber: 37.7 Consensus size: 3
102249207 CATATGTGTC
* * * * *
102249217 ATT ATT ATA ACT ATT ATT ATT TTT ATT ACT ATT ATT ATT ATT -TT CATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
* * * * *
102249265 ACT ATT ATT ATT TTT ATT -TT ATT ATT ATT ATT ACT ATT -GT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
102249311 ACT ACT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
102249328 ATTGTTTTCC
Statistics
Matches: 84, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
2 5 0.06
3 78 0.93
4 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:102249244 original size:21 final size:19
Alignment explanation
Indices: 102249226--102249296 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 19
102249216 CATTATTATA
102249226 ACTATTATTATTTTTA-TT
1 ACTATTATTATTTTTATTT
*
102249244 ACTATTATTATTATTT-TCATC
1 ACTATTATTATT-TTTAT--TT
102249265 ACTATTATTATTTTTATTTT
1 ACTATTATTATTTTTA-TTT
*
102249285 ATTATTATTATT
1 ACTATTATTATT
102249297 ACTATTGTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
18 12 0.27
19 3 0.07
20 15 0.34
21 13 0.30
22 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (19 bp):
ACTATTATTATTTTTATTT
Found at i:102249422 original size:3 final size:3
Alignment explanation
Indices: 102249406--102249447 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
102249396 TTAAATACAT
* *
102249406 TTA TT- TTA -TA TTA TTA TTA TTA TCA TTA TTA TTA TCA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
102249448 TTCATCTCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:102249435 original size:12 final size:12
Alignment explanation
Indices: 102249418--102249447 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
102249408 ATTTTATATT
102249418 ATTATTATTATC
1 ATTATTATTATC
102249430 ATTATTATTATC
1 ATTATTATTATC
102249442 ATTATT
1 ATTATT
102249448 TTCATCTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:102249543 original size:15 final size:15
Alignment explanation
Indices: 102249507--102249554 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 15
102249497 TTACTTAAAA
102249507 TTATGTATATATACT
1 TTATGTATATATACT
*
102249522 TTATTTATTTTTATATACT
1 TTATGTA----TATATACT
102249541 TTATGTATATATAC
1 TTATGTATATATAC
102249555 ATATTAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 13 0.48
19 14 0.52
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (15 bp):
TTATGTATATATACT
Found at i:102252719 original size:19 final size:19
Alignment explanation
Indices: 102252697--102252742 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
102252687 CTTCCTTTCT
102252697 TTTGCATT-CATTCCATGAA
1 TTTGCATTGCATTCCAT-AA
* *
102252716 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTCCATAA
102252735 TTTGCATT
1 TTTGCATT
102252743 AAACTTTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (19 bp):
TTTGCATTGCATTCCATAA
Found at i:102256699 original size:64 final size:64
Alignment explanation
Indices: 102256620--102256744 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
102256610 ATAATAATAC
*
102256620 ATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCAT
1 ATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATCAT
*
102256684 ATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 ATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
102256745 AGATACATGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
ATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATCAT
Found at i:102257018 original size:45 final size:45
Alignment explanation
Indices: 102256960--102257321 Score: 181
Period size: 45 Copynumber: 8.2 Consensus size: 45
102256950 CTATCTTCCT
* * *
102256960 AAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTG
1 AAGTTGCAGTGGAGCAGGCTGAAGATTGCAGATCTTGTCTCCCTG
* * ** ** *
102257005 AAGTTGCAATGGAGCA-GATCGAAGACAGTGGATCTTGTCTTCCTG
1 AAGTTGCAGTGGAGCAGGCT-GAAGATTGCAGATCTTGTCTCCCTG
* ** * * * *
102257050 AAGTTGCAGTGAAGCAGATTTAAG---CCACCATCTTATCTCCCT-
1 AAGTTGCAGTGGAGCAGGCTGAAGATTGCA-GATCTTGTCTCCCTG
* *
102257092 AAGTTGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTG
1 AAGTTGCAGTGGAGCAGGCTGAAGATTGCAGATCTTGTCTCCCTG
* ** * ** *
102257137 AAGTTACAGTGGAATA-GATCGAAGACAGC-GAATCTTGTCTCTCTG
1 AAGTTGCAGTGGAGCAGGCT-GAAGATTGCAG-ATCTTGTCTCCCTG
** * * * * *
102257182 AAGTTGCAGTGGAGCAGATTTAAG---CCAACATCCTATCTCCCT-
1 AAGTTGCAGTGGAGCAGGCTGAAGATTGC-AGATCTTGTCTCCCTG
** * * *
102257224 AAGCAGTAGTGGAGTAGGCTGAAGATTGCAAATCTTGTCTCCCTG
1 AAGTTGCAGTGGAGCAGGCTGAAGATTGCAGATCTTGTCTCCCTG
* * ** * *
102257269 AAGTTGCAGTGGAACA-GATCGAAGACGGCAAATCTTGTCTCTCTG
1 AAGTTGCAGTGGAGCAGGCT-GAAGATTGCAGATCTTGTCTCCCTG
*
102257314 AAATTGCA
1 AAGTTGCA
102257322 ATGAAGCAAA
Statistics
Matches: 233, Mismatches: 67, Indels: 34
0.70 0.20 0.10
Matches are distributed among these distances:
42 36 0.15
43 21 0.09
44 31 0.13
45 143 0.61
46 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (45 bp):
AAGTTGCAGTGGAGCAGGCTGAAGATTGCAGATCTTGTCTCCCTG
Found at i:102257040 original size:132 final size:132
Alignment explanation
Indices: 102256819--102257369 Score: 725
Period size: 132 Copynumber: 4.2 Consensus size: 132
102256809 TCACAAGCCT
* * *
102256819 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGGTATTGTCTCCCTGAAGTTACAGTG
1 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTACAGTG
* * ** *
102256884 GAGCAGATCAAAGATGGTGAATCTTGTCT-TCCTAAAGTTGCAGTGAAGAAGATTTAAGCAACCA
66 GAACAGATCGAAGACAGCGAATCTTGTCTCT-CTAAAGTTGCAGTGAAGAAGATTTAAGCAACCA
102256948 TCC
130 TCC
* ** * * *
102256951 TATCTTCCTAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAATG
1 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTACAGTG
* * * * * *
102257016 GAGCAGATCGAAGACAGTGGATCTTGTCT-TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA
66 GAACAGATCGAAGACAGCGAATCTTGTCTCT-CTAAAGTTGCAGTGAAGAAGATTTAAGCAACCA
*
102257080 TCT
130 TCC
**
102257083 TATCTCCCTAAGTTGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTACAGTG
1 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTACAGTG
* * * *
102257148 GAATAGATCGAAGACAGCGAATCTTGTCTCTCTGAAGTTGCAGTGGAGCAGATTTAAGCCAA-CA
66 GAACAGATCGAAGACAGCGAATCTTGTCTCTCTAAAGTTGCAGTGAAGAAGATTTAAG-CAACCA
102257212 TCC
130 TCC
* *
102257215 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAAATCTTGTCTCCCTGAAGTTGCAGTG
1 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTACAGTG
* * * *
102257280 GAACAGATCGAAGACGGCAAATCTTGTCTCTCTGAAA-TTGCAATGAAGCAA-ATTTAAGCCACC
66 GAACAGATCGAAGACAGCGAATCTTGTCTCTCT-AAAGTTGCAGTGAAG-AAGATTTAAGCAACC
102257343 ATCC
129 ATCC
102257347 TATCTCCCTAAGCAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGTGGAG
102257370 CAAGTTGAAA
Statistics
Matches: 376, Mismatches: 38, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
131 2 0.01
132 368 0.98
133 6 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (132 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTACAGTG
GAACAGATCGAAGACAGCGAATCTTGTCTCTCTAAAGTTGCAGTGAAGAAGATTTAAGCAACCAT
CC
Found at i:102257499 original size:44 final size:43
Alignment explanation
Indices: 102257363--102257500 Score: 143
Period size: 44 Copynumber: 3.1 Consensus size: 43
102257353 CCTAAGCAGT
* *
102257363 AGTGGAGCAAGTTGAAATTACAAGTCTTATCTCCCTAAAGTTGC
1 AGTGGAGCAAGTTGAAGTTACAAATCTTATCT-CCTAAAGTTGC
* * * * * *
102257407 GGTGGAGCACA-TTAAAGATAGCAAATCTTATCTCCTTGATGTTCC
1 AGTGGAGCA-AGTTGAAGTTA-CAAATCTTATCTCC-TAAAGTTGC
*
102257452 AGTGGAGCAAGTTGAAGTTACAAATCGTATCTCTCTAAAGTTGC
1 AGTGGAGCAAGTTGAAGTTACAAATCTTATCTC-CTAAAGTTGC
102257496 AGTGG
1 AGTGG
102257501 GGCAGATTGA
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
44 40 0.54
45 34 0.46
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (43 bp):
AGTGGAGCAAGTTGAAGTTACAAATCTTATCTCCTAAAGTTGC
Found at i:102259289 original size:3 final size:3
Alignment explanation
Indices: 102259272--102259385 Score: 90
Period size: 3 Copynumber: 38.7 Consensus size: 3
102259262 CATATGTGTC
* * * * *
102259272 ATT ATT ATA ACT ATT ATT ATT TTT ATT ACT ATT ATT ATT ATT -TT CATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
* * * * *
102259320 ACT ATT ATT ATT TTT ATT -TT ATT ATT ATT ATT ACT ATT -GT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
102259366 ACT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
102259386 ATTGTTTTCC
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
2 5 0.06
3 81 0.93
4 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:102259299 original size:21 final size:19
Alignment explanation
Indices: 102259281--102259351 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 19
102259271 CATTATTATA
102259281 ACTATTATTATTTTTA-TT
1 ACTATTATTATTTTTATTT
*
102259299 ACTATTATTATTATTT-TCATC
1 ACTATTATTATT-TTTAT--TT
102259320 ACTATTATTATTTTTATTTT
1 ACTATTATTATTTTTA-TTT
*
102259340 ATTATTATTATT
1 ACTATTATTATT
102259352 ACTATTGTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
18 12 0.27
19 3 0.07
20 15 0.34
21 13 0.30
22 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (19 bp):
ACTATTATTATTTTTATTT
Found at i:102259480 original size:3 final size:3
Alignment explanation
Indices: 102259464--102259505 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
102259454 TTAAATACAT
* *
102259464 TTA TT- TTA -TA TTA TTA TTA TTA TCA TTA TTA TTA TCA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
102259506 TTCATCTCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:102259493 original size:12 final size:12
Alignment explanation
Indices: 102259476--102259505 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
102259466 ATTTTATATT
102259476 ATTATTATTATC
1 ATTATTATTATC
102259488 ATTATTATTATC
1 ATTATTATTATC
102259500 ATTATT
1 ATTATT
102259506 TTCATCTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:102265727 original size:23 final size:22
Alignment explanation
Indices: 102265684--102265729 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
102265674 TTTGTTTTTA
*
102265684 ACTTTAACTTTTATTTAAAAAC
1 ACTTTAACTTTTATATAAAAAC
* *
102265706 ACTTTAATTTGTTATATCAAAAC
1 ACTTTAACTT-TTATATAAAAAC
102265729 A
1 A
102265730 TAATATCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (22 bp):
ACTTTAACTTTTATATAAAAAC
Found at i:102266051 original size:31 final size:30
Alignment explanation
Indices: 102265994--102266076 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 30
102265984 AGTTGTGGAA
* *
102265994 TTAATCTTTATA-TTTTAATTTGATCAATT
1 TTAATCCTTATACTTTTAAATTGATCAATT
102266023 TTAATCCTTATACTTTTGAAATTGATCAATT
1 TTAATCCTTATACTTTT-AAATTGATCAATT
*
102266054 TTAATCAC-TGTACTTTTTAAATT
1 TTAATC-CTTATAC-TTTTAAATT
102266077 TTTAAATTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 11 0.23
30 4 0.09
31 27 0.57
32 5 0.11
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.53
Consensus pattern (30 bp):
TTAATCCTTATACTTTTAAATTGATCAATT
Found at i:102266085 original size:31 final size:31
Alignment explanation
Indices: 102265994--102266087 Score: 86
Period size: 31 Copynumber: 3.1 Consensus size: 31
102265984 AGTTGTGGAA
* * *
102265994 TTAATCTTTATA-TTTT-AATTTGATCAATT
1 TTAATCCTTATACTTTTGAAATTGATAAATT
*
102266023 TTAATCCTTATACTTTTGAAATTGATCAATT
1 TTAATCCTTATACTTTTGAAATTGATAAATT
* * **
102266054 TTAATCAC-TGTACTTTTTAAATTTTTAAATT
1 TTAATC-CTTATACTTTTGAAATTGATAAATT
102266085 TTA
1 TTA
102266088 GTCTTAGCCC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
29 11 0.20
30 4 0.07
31 39 0.71
32 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.04, T:0.54
Consensus pattern (31 bp):
TTAATCCTTATACTTTTGAAATTGATAAATT
Found at i:102266549 original size:14 final size:14
Alignment explanation
Indices: 102266530--102266567 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
102266520 GTTTGCCAGT
*
102266530 AAAATGTTTTCCGG
1 AAAATGATTTCCGG
*
102266544 AAAATGATTTCTGG
1 AAAATGATTTCCGG
102266558 AAAATGATTT
1 AAAATGATTT
102266568 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCCGG
Found at i:102266583 original size:19 final size:20
Alignment explanation
Indices: 102266551--102266592 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
102266541 CGGAAAATGA
102266551 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
102266571 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
102266590 TTT
1 TTT
102266593 GATGTTTGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:102268150 original size:21 final size:21
Alignment explanation
Indices: 102268126--102268165 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
102268116 ATCAATGCCT
102268126 TTTTGTTCAACTCATCTACTG
1 TTTTGTTCAACTCATCTACTG
102268147 TTTTGTTCAACTCATCTAC
1 TTTTGTTCAACTCATCTAC
102268166 CTTCCTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.25, G:0.07, T:0.47
Consensus pattern (21 bp):
TTTTGTTCAACTCATCTACTG
Found at i:102273039 original size:18 final size:18
Alignment explanation
Indices: 102273016--102273103 Score: 122
Period size: 18 Copynumber: 4.9 Consensus size: 18
102273006 CCCAACTACT
* *
102273016 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTATC
102273034 GTATACGTGAATAGTATC
1 GTATACGTGAATAGTATC
* * *
102273052 ATATACGTGAATAATATT
1 GTATACGTGAATAGTATC
102273070 GTATACGTGAATAGTATC
1 GTATACGTGAATAGTATC
*
102273088 ATATACGTGAATAGTA
1 GTATACGTGAATAGTA
102273104 CCATAAACGG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (18 bp):
GTATACGTGAATAGTATC
Found at i:102285372 original size:29 final size:29
Alignment explanation
Indices: 102285340--102285406 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
102285330 AAAGGCTTAA
102285340 ATATAATAGA-TTCTACCACTAGGGATCAC
1 ATATAATAGATTTC-ACCACTAGGGATCAC
* * * *
102285369 ATATAATTGATTTCGCCATTAGGGCTCAC
1 ATATAATAGATTTCACCACTAGGGATCAC
102285398 A-ATAATAGA
1 ATATAATAGA
102285407 GAACAGCCAC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
28 7 0.22
29 22 0.69
30 3 0.09
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (29 bp):
ATATAATAGATTTCACCACTAGGGATCAC
Found at i:102290395 original size:21 final size:20
Alignment explanation
Indices: 102290369--102290441 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 20
102290359 ACATATATGT
102290369 ATAATAATGATGAAAATAATA
1 ATAATAAT-ATGAAAATAATA
102290390 ATAATAATAGTGAAAATAAATA
1 ATAATAATA-TGAAAAT-AATA
102290412 AT-ATAATAAT-AAATATAATA
1 ATAATAAT-ATGAAA-ATAATA
* *
102290432 GTAACAATAT
1 ATAATAATAT
102290442 TAGTAATATG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
20 11 0.24
21 27 0.60
22 7 0.16
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (20 bp):
ATAATAATATGAAAATAATA
Found at i:102290413 original size:16 final size:15
Alignment explanation
Indices: 102290384--102290426 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
102290374 AATGATGAAA
102290384 ATAATAAT-AATAAT
1 ATAATAATAAATAAT
102290398 AGTGAA-AATAAATAAT
1 A-T-AATAATAAATAAT
102290414 ATAATAATAAATA
1 ATAATAATAAATA
102290427 TAATAGTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 13 0.52
16 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAATAATAAATAAT
Found at i:102291077 original size:22 final size:23
Alignment explanation
Indices: 102291050--102291097 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
102291040 ACTCTAATTT
* * *
102291050 TTTTTATTTTTTA-TTTCTTATA
1 TTTTTATATTATATTTTCGTATA
102291072 TTTTTATATTATATTTTCGTATA
1 TTTTTATATTATATTTTCGTATA
102291095 TTT
1 TTT
102291098 GTCGTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTTTATATTATATTTTCGTATA
Found at i:102291634 original size:16 final size:16
Alignment explanation
Indices: 102291613--102291644 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
102291603 TTTTGTGTAA
*
102291613 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
102291629 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
102291645 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:102292598 original size:72 final size:72
Alignment explanation
Indices: 102292362--102292614 Score: 391
Period size: 73 Copynumber: 3.5 Consensus size: 72
102292352 ACATGTGAAC
* *
102292362 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
102292426 CAGCGTGTCC
63 CAACGTGTCT
* *
102292436 CGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
102292501 ACGTGTCT
65 ACGTGTCT
102292509 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
102292574 TGTGTCT
66 CGTGTCT
*
102292581 TGAGGCTCAACTTATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
102292615 TTCTTTCAAA
Statistics
Matches: 167, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
72 67 0.40
73 71 0.43
74 29 0.17
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:102292696 original size:88 final size:87
Alignment explanation
Indices: 102292547--102292792 Score: 289
Period size: 88 Copynumber: 2.8 Consensus size: 87
102292537 AGTTGAATTT
* ** * * **
102292547 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTTATTTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
102292612 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTCAAAAACA-AA-AA
* *
102292635 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
102292700 TGATTTTTTTGAAAAACAGAAA
66 TGATTTCTTTCAAAAACAAAAA
* **
102292722 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAGAAATTGAAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
102292786 GAGTTGA
62 GAGTTGA
102292793 AATTAAAACA
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
87 7 0.05
88 74 0.54
89 14 0.10
90 41 0.30
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (87 bp):
TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTCAAAAACAAAAA
Found at i:102292899 original size:54 final size:54
Alignment explanation
Indices: 102292835--102292938 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
102292825 GCCCCGAGCC
* * *
102292835 TCAACTCACCTCTTGCAATATGAGCTGATT-TTGAAAAAGTAGAAATTAAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTCTTGAAAAA-CAGAAATTAAAAGGT
* *
102292889 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATTCTTGAAAAACAGAAATTAAA
102292939 TTACCTCATC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 37 0.84
55 7 0.16
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTCTTGAAAAACAGAAATTAAAAGGT
Found at i:102293310 original size:75 final size:74
Alignment explanation
Indices: 102293009--102293345 Score: 464
Period size: 72 Copynumber: 4.5 Consensus size: 74
102292999 AGTGTGTAAT
* *
102293009 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAACAGAAATTGAAAATACC
*
102293074 TCAGCATGTGAAC
65 TCAGC--GTG-TC
*
102293087 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
102293151 CAACGTGTC
66 CAGCGTGTC
* ** * * *
102293160 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
102293223 CAGCGTGTC
66 CAGCGTGTC
** * *
102293232 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AACAGAAATTGAAAATACC
102293297 TCAGCGTGTC
65 TCAGCGTGTC
*
102293307 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
102293346 GAAAAACAAA
Statistics
Matches: 237, Mismatches: 18, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
72 67 0.28
73 1 0.00
74 40 0.17
75 65 0.27
76 25 0.11
77 38 0.16
78 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:102293312 original size:147 final size:147
Alignment explanation
Indices: 102293009--102293363 Score: 466
Period size: 147 Copynumber: 2.4 Consensus size: 147
102292999 AGTGTGTAAT
* * *
102293009 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTT-GAAAACAGAAATTGAAAATACC
102293074 TCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAA
63 TCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAA
102293139 TTGAAAATACCTCAACGTGTC
127 TTGAAAATACCTCAACGTGTC
* ** * *
102293160 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
* ** * *
102293225 GC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATT
66 GCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAA-AACAGAAATT
* *
102293288 GAAATTACCTCAGCGTGTC
129 GAAAATACCTCAACGTGTC
* *
102293307 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAA
102293364 GGCTTAACTC
Statistics
Matches: 179, Mismatches: 22, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
145 2 0.01
146 51 0.28
147 67 0.37
148 25 0.14
149 4 0.02
151 30 0.17
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (147 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
GCAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGA
AAATACCTCAACGTGTC
Found at i:102293482 original size:69 final size:71
Alignment explanation
Indices: 102293363--102293537 Score: 207
Period size: 69 Copynumber: 2.5 Consensus size: 71
102293353 AAAAATTAAA
* * * * **
102293363 AGGCTTAACTCACCTCTCGCAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCGGCGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
102293426 GCCCCG
66 GCCCCG
*
102293432 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAA-A-AAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
* **
102293495 GTCTTG
66 GCCCCG
102293501 AGGCTCAACTCA-TCTCTCCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCT-CGCAATATGAGTTGATTTT
102293538 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
68 1 0.01
69 62 0.67
70 22 0.24
71 7 0.08
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (71 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
GCCCCG
Done.