Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 307 of 349
Found at i:102584107 original size:42 final size:42
Alignment explanation
Indices: 102584048--102584133 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
102584038 ATCATAAATT
102584048 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
1 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
102584090 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
1 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
102584132 TA
1 TA
102584134 ATTAGTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.41, C:0.23, G:0.00, T:0.36
Consensus pattern (42 bp):
TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
Found at i:102584410 original size:22 final size:22
Alignment explanation
Indices: 102584371--102584413 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
102584361 AACTAAACCT
* *
102584371 ATATATTTTTCTTTCTCAATTC
1 ATATATTTTTCGTACTCAATTC
*
102584393 ATATATTTTTGGTACTCAATT
1 ATATATTTTTCGTACTCAATT
102584414 TCTTGCCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.56
Consensus pattern (22 bp):
ATATATTTTTCGTACTCAATTC
Found at i:102585164 original size:20 final size:20
Alignment explanation
Indices: 102585141--102585197 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
102585131 TTAATTTATT
102585141 TTTAATAATAATAATCATAA
1 TTTAATAATAATAATCATAA
*
102585161 TTTAATAAT-ATAAATTATAA
1 TTTAATAATAAT-AATCATAA
*
102585181 TTTGATAGAATAATAAT
1 TTT-A-ATAATAATAAT
102585198 AATGATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 2 0.06
20 19 0.61
21 1 0.03
22 7 0.23
23 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTAATAATAATAATCATAA
Found at i:102585357 original size:25 final size:25
Alignment explanation
Indices: 102585321--102585395 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 25
102585311 CTTGGCTTTA
102585321 ATTTAAT--TTAATTTATAATATGAT
1 ATTTAATAATTAATTTATAATAT-AT
*
102585345 ATTT-ATAATTAATTAATTTAATAATAT
1 ATTTAATAATTAATT--TATAAT-ATAT
*
102585372 ATTTAATAATTAAATTAT-ATATAT
1 ATTTAATAATTAATTTATAATATAT
102585396 TTACATAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
23 2 0.05
24 8 0.19
25 8 0.19
26 2 0.05
27 11 0.26
28 11 0.26
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
ATTTAATAATTAATTTATAATATAT
Found at i:102585391 original size:20 final size:21
Alignment explanation
Indices: 102585348--102585406 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
102585338 ATATGATATT
* *
102585348 TATAATTAATTAATTTAATAA
1 TATATTTAATTAATTAAATAA
102585369 TATATTTAA-TAATTAAATTATA
1 TATATTTAATTAATTAAA-TA-A
102585391 TATATTTACA-TAATTA
1 TATATTTA-ATTAATTA
102585407 TAATCTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.21
21 10 0.30
22 9 0.27
23 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TATATTTAATTAATTAAATAA
Found at i:102586953 original size:49 final size:49
Alignment explanation
Indices: 102586876--102587120 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
102586866 TAGCCGAAGC
* * *
102586876 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
102586925 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
102586975 CATCTGATACACGTAGTAGCCTGCACTTTGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
102587026 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
102587075 TATCTGGTACACGTAGTAGCCTGCACTTAGTTCTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
102587121 TCACAATAGC
Statistics
Matches: 166, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 82 0.49
50 47 0.28
51 37 0.22
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:102587058 original size:101 final size:98
Alignment explanation
Indices: 102586889--102587120 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
102586879 CTGGTACGCA
* * * *
102586889 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
102586954 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* * *
102586988 TAGTAGCCTGCACTTTGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
102587053 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
*
102587088 TAGTAGCCTGCACTTAGTTCTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
102587121 TCACAATAGC
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 29 0.25
100 45 0.39
101 42 0.36
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:102594056 original size:45 final size:45
Alignment explanation
Indices: 102593991--102594103 Score: 174
Period size: 45 Copynumber: 2.5 Consensus size: 45
102593981 TAATCAGTAA
* * *
102593991 CTGTAGCAATAACAGTAACAGTATTCAACACACAAAGTG-CTGAAT
1 CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAAT
102594036 CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
1 CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
*
102594081 CGGTAACAGTAACGGTAACAGTA
1 CTGTAACAGTAACGGTAACAGTA
102594104 ACAGTAGTCG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 62 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
Found at i:102594098 original size:12 final size:12
Alignment explanation
Indices: 102594081--102594105 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102594071 AGTGTCGAAT
102594081 CGGTAACAGTAA
1 CGGTAACAGTAA
102594093 CGGTAACAGTAA
1 CGGTAACAGTAA
102594105 C
1 C
102594106 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:102595198 original size:13 final size:14
Alignment explanation
Indices: 102595177--102595223 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
102595167 CTTTACATTG
*
102595177 TTTTGTTTC-TTTA
1 TTTTATTTCATTTA
*
102595190 TTTTATTTCATTTC
1 TTTTATTTCATTTA
*
102595204 TTTTA-TTCTTTTA
1 TTTTATTTCATTTA
102595217 TTTTATT
1 TTTTATT
102595224 AACTTAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.77
Consensus pattern (14 bp):
TTTTATTTCATTTA
Found at i:102595507 original size:3 final size:3
Alignment explanation
Indices: 102595499--102595544 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
102595489 AATTTATTTT
* * *
102595499 TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TCA TAA T-T TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
102595545 TAAATTATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
2 1 0.03
3 35 0.97
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:102595769 original size:24 final size:23
Alignment explanation
Indices: 102595739--102595782 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
102595729 AATTAATTTA
102595739 ATAATATATTTA-ATAATTAAAT
1 ATAATATATTTACATAATTAAAT
102595761 -TATATATATTTACATAATTAAA
1 ATA-ATATATTTACATAATTAAA
102595783 ATCTAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATATATTTACATAATTAAAT
Found at i:102604864 original size:12 final size:12
Alignment explanation
Indices: 102604847--102604879 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
102604837 TTCCCTGTAA
102604847 AATAGTAAAAAT
1 AATAGTAAAAAT
*
102604859 AATAGTAAGAAT
1 AATAGTAAAAAT
102604871 AATAGTAAA
1 AATAGTAAA
102604880 GGGGAAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:102605788 original size:10 final size:10
Alignment explanation
Indices: 102605767--102605828 Score: 74
Period size: 10 Copynumber: 6.1 Consensus size: 10
102605757 AATAAAATTC
102605767 TAAACGATAAA
1 TAAA-GATAAA
102605778 TACAA-ATAAA
1 TA-AAGATAAA
*
102605788 TAAAGATAAT
1 TAAAGATAAA
102605798 TAAAGATAAA
1 TAAAGATAAA
102605808 TAAAGATAAA
1 TAAAGATAAA
102605818 TGAAA-ATAAA
1 T-AAAGATAAA
102605828 T
1 T
102605829 CCTAAAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
9 2 0.04
10 37 0.80
11 5 0.11
12 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.23
Consensus pattern (10 bp):
TAAAGATAAA
Found at i:102606199 original size:16 final size:16
Alignment explanation
Indices: 102606178--102606208 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102606168 TTCACAATTA
*
102606178 TGTCTTTTATATTTTC
1 TGTCTTCTATATTTTC
102606194 TGTCTTCTATATTTT
1 TGTCTTCTATATTTT
102606209 ACATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.13, G:0.06, T:0.68
Consensus pattern (16 bp):
TGTCTTCTATATTTTC
Found at i:102607793 original size:61 final size:59
Alignment explanation
Indices: 102607726--102607840 Score: 149
Period size: 61 Copynumber: 1.9 Consensus size: 59
102607716 GTGATTATTG
** * * * *
102607726 TAATATTAAATTTAATTTAATTTTGATCTTATAATAAATATTTTATTATTTTAATAGGATT
1 TAATATTAAATTTAACCTAATATTCATC-T-TAATAAATATTATATTAATTTAATAGGATT
*
102607787 TAATATTAAATTTAACCTAATATTCATCTTGATAAATATTATATTAATTTAATA
1 TAATATTAAATTTAACCTAATATTCATCTTAATAAATATTATATTAATTTAATA
102607841 TTCAAGTGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
59 22 0.47
60 1 0.02
61 24 0.51
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (59 bp):
TAATATTAAATTTAACCTAATATTCATCTTAATAAATATTATATTAATTTAATAGGATT
Found at i:102620838 original size:15 final size:17
Alignment explanation
Indices: 102620808--102620839 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
102620798 TTGATACTTG
102620808 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
102620825 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
102620840 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:102622799 original size:15 final size:17
Alignment explanation
Indices: 102622781--102622812 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
102622771 TAGCATAATT
102622781 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
102622796 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
102622813 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:102626388 original size:23 final size:23
Alignment explanation
Indices: 102626362--102626428 Score: 64
Period size: 27 Copynumber: 2.7 Consensus size: 23
102626352 GATGGATTAT
102626362 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTTGGGAGG
*
102626385 ATTATATGATACTGG-GTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTGGGAGG
*
102626412 ATTATACTGGTGTGTTT
1 ATTATTCTGGTGTGTTT
102626429 TGGTTGGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
22 4 0.11
23 7 0.19
24 1 0.03
25 6 0.17
26 1 0.03
27 13 0.36
28 4 0.11
ACGTcount: A:0.18, C:0.04, G:0.33, T:0.45
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTGGGAGG
Found at i:102626388 original size:28 final size:28
Alignment explanation
Indices: 102626335--102626417 Score: 123
Period size: 29 Copynumber: 3.0 Consensus size: 28
102626325 CACTTTGTGC
102626335 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
102626364 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
102626392 GATACTGG-GTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
102626418 CTGGTGTGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.34
28 15 0.30
29 18 0.36
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:102626411 original size:27 final size:28
Alignment explanation
Indices: 102626339--102626417 Score: 115
Period size: 27 Copynumber: 2.8 Consensus size: 28
102626329 TTGTGCTATT
* *
102626339 CTGGTGTGTTTTGGATGGATTATATTATT
1 CTGGTGTGTTTTGGA-GGATTATATGATA
*
102626368 CTGGTGTGTTTGGGAGGATTATATGATA
1 CTGGTGTGTTTTGGAGGATTATATGATA
102626396 CTGG-GTGTTTTGGAGGATTATA
1 CTGGTGTGTTTTGGAGGATTATA
102626418 CTGGTGTGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 17 0.37
28 15 0.33
29 14 0.30
ACGTcount: A:0.19, C:0.04, G:0.33, T:0.44
Consensus pattern (28 bp):
CTGGTGTGTTTTGGAGGATTATATGATA
Found at i:102636731 original size:30 final size:30
Alignment explanation
Indices: 102636697--102636771 Score: 109
Period size: 30 Copynumber: 2.5 Consensus size: 30
102636687 ACCATCAAAT
102636697 TATGAAAAGGGATGGCTTCGGCTATCCT-A-C
1 TATGAAAAGGGATGGCTTCGGCTAT--TGATC
*
102636727 TATGAAAAAGGATGGCTTCGGCTATTGATC
1 TATGAAAAGGGATGGCTTCGGCTATTGATC
102636757 TATGAAAAGGGATGG
1 TATGAAAAGGGATGG
102636772 TGACGACCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 1 0.02
29 1 0.02
30 39 0.95
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (30 bp):
TATGAAAAGGGATGGCTTCGGCTATTGATC
Found at i:102636823 original size:30 final size:29
Alignment explanation
Indices: 102636757--102636823 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
102636747 GCTATTGATC
* * *
102636757 TATGAAAAGGGATGGTGACGACCATCGAA
1 TATGAAAAAGGATGGTGACAACCATCAAA
* *
102636786 TATTGAAAAAGGTTGGTGACAACCATTAAA
1 TA-TGAAAAAGGATGGTGACAACCATCAAA
102636816 TTATGAAA
1 -TATGAAA
102636824 TGGGATAGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 2 0.06
30 27 0.87
31 2 0.06
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (29 bp):
TATGAAAAAGGATGGTGACAACCATCAAA
Found at i:102646016 original size:54 final size:54
Alignment explanation
Indices: 102645952--102646060 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
102645942 TGTTAAAAAT
*
102645952 TTCATCTATTTTTACTGTTAAAAATTGGTATGACTAACAAAATAACCAGACAGC
1 TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
102646006 TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
1 TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
102646060 T
1 T
102646061 ACACATGGCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (54 bp):
TTCATCTATTTTTACTGTTAAAAATTGGCATGACTAACAAAATAACCAGACAGC
Found at i:102650323 original size:52 final size:52
Alignment explanation
Indices: 102650225--102650329 Score: 142
Period size: 51 Copynumber: 2.0 Consensus size: 52
102650215 CCTAAAATTT
* **
102650225 AAGTATAAAATTTAATTTTTTTATCGTTTTAAAAAATTGTTCAAATTTTCAC
1 AAGTATAAAATTTAATTTTTTTATCCTTTTAAAAAATTGCACAAATTTTCAC
* *
102650277 AAGTATAAAATTT-A-TTTTTTATCCTATTTAAAAAATTGCACAAAATTTAAC
1 AAGTATAAAATTTAATTTTTTTATCCT-TTTAAAAAATTGCACAAATTTTCAC
102650328 AA
1 AA
102650330 TAATTTTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
50 10 0.21
51 24 0.51
52 13 0.28
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.44
Consensus pattern (52 bp):
AAGTATAAAATTTAATTTTTTTATCCTTTTAAAAAATTGCACAAATTTTCAC
Found at i:102655194 original size:35 final size:36
Alignment explanation
Indices: 102655148--102655218 Score: 135
Period size: 35 Copynumber: 2.0 Consensus size: 36
102655138 ATCTTTATCG
102655148 TCCTTATTCAAACATAACTTCCC-TTTTTTCCCAAC
1 TCCTTATTCAAACATAACTTCCCTTTTTTTCCCAAC
102655183 TCCTTATTCAAACATAACTTCCCTTTTTTTCCCAAC
1 TCCTTATTCAAACATAACTTCCCTTTTTTTCCCAAC
102655219 ACTTACTTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 23 0.66
36 12 0.34
ACGTcount: A:0.25, C:0.34, G:0.00, T:0.41
Consensus pattern (36 bp):
TCCTTATTCAAACATAACTTCCCTTTTTTTCCCAAC
Found at i:102657070 original size:90 final size:91
Alignment explanation
Indices: 102656893--102657076 Score: 219
Period size: 90 Copynumber: 2.0 Consensus size: 91
102656883 ATTGTGAAAG
* * * * *
102656893 TATAAATTTCATTCGAAATTCCGAACAATGGAGAGGTGTCTCGCATTCAAGAGTCACGATGAACA
1 TATAAATTCCATTCGAAATTCCGAACAATGGAGAAGTGTCTAGCATCCAAGAGCCACGATGAACA
**
102656958 TTGCATATTGATCTAGCAGTGGACAA
66 TTGCATATCAATCTAGCAGTGGACAA
* ** * *
102656984 TATACATTCCATTCGAAATTCCGAATGATGGAGAAGT-TCTAGCATCCAAGAGCCACGATGGACG
1 TATAAATTCCATTCGAAATTCCGAACAATGGAGAAGTGTCTAGCATCCAAGAGCCACGATGAACA
* *
102657048 TTGCATGTCAAT-TCAGCGGTGGACAA
66 TTGCATATCAATCT-AGCAGTGGACAA
102657074 TAT
1 TAT
102657077 GGATACGATA
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
89 1 0.01
90 45 0.58
91 32 0.41
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (91 bp):
TATAAATTCCATTCGAAATTCCGAACAATGGAGAAGTGTCTAGCATCCAAGAGCCACGATGAACA
TTGCATATCAATCTAGCAGTGGACAA
Found at i:102662739 original size:44 final size:44
Alignment explanation
Indices: 102662676--102662760 Score: 170
Period size: 44 Copynumber: 1.9 Consensus size: 44
102662666 TTCTTGTGGA
102662676 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATACT
1 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATACT
102662720 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGAT
1 CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGAT
102662761 GCTTCTTGAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32
Consensus pattern (44 bp):
CTAACTCCATGATTAAGTAAATTGTGAATTATCGGAACGATACT
Found at i:102668764 original size:22 final size:22
Alignment explanation
Indices: 102668739--102668782 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
102668729 TAGTCATATA
102668739 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
102668761 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
102668783 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:102668818 original size:13 final size:14
Alignment explanation
Indices: 102668802--102668843 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
102668792 TTTCAATTTT
102668802 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
102668815 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
102668830 ATTTTAAATAATAT
1 ATTTT-AATAATAT
102668844 TATTCACGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:102668828 original size:16 final size:16
Alignment explanation
Indices: 102668806--102668842 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
102668796 AATTTTATTT
102668806 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
102668823 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
102668838 TAATA
1 TAATA
102668843 TTATTCACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:102668895 original size:15 final size:15
Alignment explanation
Indices: 102668875--102668931 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
102668865 ATTCAATATT
102668875 AATATTTTAATAATA
1 AATATTTTAATAATA
*
102668890 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
102668909 AATATATTAATAATA
1 AATATTTTAATAATA
*
102668924 AATGTTTT
1 AATATTTT
102668932 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:102669931 original size:187 final size:187
Alignment explanation
Indices: 102669609--102669957 Score: 653
Period size: 187 Copynumber: 1.9 Consensus size: 187
102669599 GATAAACACC
* *
102669609 AAATTATACATATCTATACCTCAAATACTTAGCATATTTATGGATGTTTATCACTAGATTTGTGG
1 AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
* * *
102669674 ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGTACTTAGGAGAGCACCAAGAGTCGAAAGG
66 ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
102669739 AGCCAAAAACGAGCTAAAAAGGGACAAAACGGTCCTTTTTATGGATGTTTATACCCT
131 AGCCAAAAACGAGCTAAAAAGGGACAAAACGGTCCTTTTTATGGATGTTTATACCCT
102669796 AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
1 AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
102669861 ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
66 ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
102669926 AGCCAAAAACGAGCTAAAAAGGGACAAAACGG
131 AGCCAAAAACGAGCTAAAAAGGGACAAAACGG
102669958 ACCAAATGGA
Statistics
Matches: 157, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
187 157 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (187 bp):
AAATTATACATATCTATACCCCAAATACTTAACATATTTATGGATGTTTATCACTAGATTTGTGG
ATTTTGGTGCTCTTAATCCAGTTATTTCATGTTTTGCACTCAGGAGAGCACCAAGAGTCGAAAAG
AGCCAAAAACGAGCTAAAAAGGGACAAAACGGTCCTTTTTATGGATGTTTATACCCT
Found at i:102673793 original size:21 final size:21
Alignment explanation
Indices: 102673767--102673810 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
102673757 AAGTGCTTTT
102673767 AACTTAGTACAAAACCTATAC
1 AACTTAGTACAAAACCTATAC
102673788 AACTTAGTACAAAACCTATAC
1 AACTTAGTACAAAACCTATAC
102673809 AA
1 AA
102673811 GCTCTCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.23
Consensus pattern (21 bp):
AACTTAGTACAAAACCTATAC
Found at i:102678983 original size:5 final size:5
Alignment explanation
Indices: 102678973--102679005 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
102678963 CCACTTTGTG
102678973 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
102679006 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:102686283 original size:25 final size:26
Alignment explanation
Indices: 102686233--102686286 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
102686223 CTCATGCGAA
* *
102686233 CATGTAAACGGGAAGCTCGTGTGAGC
1 CATGTAAACGAGAAGCTCGTGAGAGC
102686259 CATGT-AACGAGAAGCTC-TAGAGAGC
1 CATGTAAACGAGAAGCTCGT-GAGAGC
102686284 CAT
1 CAT
102686287 TAATAGGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.04
25 19 0.76
26 5 0.20
ACGTcount: A:0.31, C:0.20, G:0.30, T:0.19
Consensus pattern (26 bp):
CATGTAAACGAGAAGCTCGTGAGAGC
Found at i:102686415 original size:25 final size:25
Alignment explanation
Indices: 102686291--102686432 Score: 71
Period size: 25 Copynumber: 5.7 Consensus size: 25
102686281 AGCCATTAAT
* *
102686291 AGGAAGCTCATGCA-AGCCAATAAC
1 AGGAAGCTCATGAAGAGCCAATATC
* * * * *
102686315 GGGAAGTTCAAG-TGAGCCAATATT
1 AGGAAGCTCATGAAGAGCCAATATC
* * *
102686339 AAGAAGCTC-CGAAGAGTCAATAATC
1 AGGAAGCTCATGAAGAGCCAAT-ATC
* *
102686364 GGGAAGCTCATGAAAGAG-CATTTTATC
1 AGGAAGCTCATG-AAGAGCCA--ATATC
102686391 AGGAAGCTC-TGAAGAGCCATATATC
1 AGGAAGCTCATGAAGAGCCA-ATATC
* *
102686416 GGGACGCTCAT-AAGAGC
1 AGGAAGCTCATGAAGAGC
102686433 TGCAGTATGT
Statistics
Matches: 88, Mismatches: 21, Indels: 17
0.70 0.17 0.13
Matches are distributed among these distances:
23 1 0.01
24 30 0.34
25 32 0.36
26 8 0.09
27 16 0.18
28 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (25 bp):
AGGAAGCTCATGAAGAGCCAATATC
Found at i:102686703 original size:20 final size:20
Alignment explanation
Indices: 102686678--102686717 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
102686668 GCCATTTACA
102686678 CAATTC-ACATATACAATATT
1 CAATTCAACATATA-AATATT
102686698 CAATTCAAACATATAAATAT
1 CAATTC-AACATATAAATAT
102686718 ACAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (20 bp):
CAATTCAACATATAAATATT
Found at i:102688812 original size:13 final size:12
Alignment explanation
Indices: 102688745--102688815 Score: 55
Period size: 12 Copynumber: 6.2 Consensus size: 12
102688735 TTCTTGATGC
102688745 TTAATTACAAAT-
1 TTAATTA-AAATA
102688757 TT-ATTAAAATTA
1 TTAATTAAAA-TA
102688769 TTAATTAAAA-A
1 TTAATTAAAATA
102688780 -TAA--AAAATA
1 TTAATTAAAATA
**
102688789 TTTTTTAAAATA
1 TTAATTAAAATA
102688801 TTAATTACAAATA
1 TTAATTA-AAATA
102688814 TT
1 TT
102688816 TAATAGTTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
8 4 0.09
9 1 0.02
10 7 0.15
11 6 0.13
12 15 0.32
13 14 0.30
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAATTAAAATA
Found at i:102689128 original size:13 final size:13
Alignment explanation
Indices: 102689109--102689170 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 13
102689099 TAAATCAATT
102689109 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* ** *
102689122 TTCTCAAACTCAT
1 TTTTCAAAAGCAC
* *
102689135 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
102689148 TTTTCAAAATCAC
1 TTTTCAAAAGCAC
102689161 TTTTCAAAAG
1 TTTTCAAAAG
102689171 TATTGCCAAA
Statistics
Matches: 35, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:102689146 original size:26 final size:26
Alignment explanation
Indices: 102689108--102689170 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
102689098 TTAAATCAAT
*
102689108 TTTTTCAAAAGCACTTCTCAAACTCA
1 TTTTTCAAAAGCACTTCTCAAAATCA
* * *
102689134 TTTTTCCACAGCACTTTTCAAAATCA
1 TTTTTCAAAAGCACTTCTCAAAATCA
*
102689160 CTTTTCAAAAG
1 TTTTTCAAAAG
102689171 TATTGCCAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (26 bp):
TTTTTCAAAAGCACTTCTCAAAATCA
Found at i:102692098 original size:18 final size:17
Alignment explanation
Indices: 102692075--102692108 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
102692065 GTTCTAAATT
102692075 ACATAATATATAAATATA
1 ACATAATATA-AAATATA
102692093 ACATAATATAAAATAT
1 ACATAATATAAAATAT
102692109 TAAAAACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (17 bp):
ACATAATATAAAATATA
Found at i:102701104 original size:43 final size:43
Alignment explanation
Indices: 102701023--102701114 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
102701013 GTAATATGGT
* *
102701023 TTCCACTGATACCCTATTACGGGAAACAGTTGAATACCATGAA
1 TTCCACTGATACCCTATTACAGGAAACAATTGAATACCATGAA
* *
102701066 TTCCACTGATACCCTATTA-AGTACAACAATTGATTACCATGAA
1 TTCCACTGATACCCTATTACAGGA-AACAATTGAATACCATGAA
*
102701109 CTCCAC
1 TTCCAC
102701115 AACTCATTAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 2 0.05
43 41 0.95
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (43 bp):
TTCCACTGATACCCTATTACAGGAAACAATTGAATACCATGAA
Found at i:102702264 original size:6 final size:6
Alignment explanation
Indices: 102702253--102702291 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
102702243 ATCTATTATA
*
102702253 TTAGTT TTAGTT TTAGTT TTCGTT TTAGTT TTAGTT TTA
1 TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTA
102702292 CTTAATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.03, G:0.15, T:0.67
Consensus pattern (6 bp):
TTAGTT
Found at i:102708123 original size:21 final size:22
Alignment explanation
Indices: 102708099--102708140 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
102708089 AAGACTACAT
102708099 GTATAAATAATA-TTGA-AAAAC
1 GTAT-AATAATAGTTGATAAAAC
*
102708120 GTATTATAATAGTTGATAAAA
1 GTATAATAATAGTTGATAAAA
102708141 ACTTTTAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.33
Consensus pattern (22 bp):
GTATAATAATAGTTGATAAAAC
Found at i:102710910 original size:26 final size:28
Alignment explanation
Indices: 102710875--102710932 Score: 93
Period size: 26 Copynumber: 2.1 Consensus size: 28
102710865 TAAGCAAAAC
*
102710875 AAAAGGGAAGAAATAAATAATTT-A-AA
1 AAAAGAGAAGAAATAAATAATTTGAGAA
102710901 AAAAGAGAAGAAATAAATAATTTGAGAA
1 AAAAGAGAAGAAATAAATAATTTGAGAA
102710929 AAAA
1 AAAA
102710933 TTAGAAAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 22 0.76
27 1 0.03
28 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.17
Consensus pattern (28 bp):
AAAAGAGAAGAAATAAATAATTTGAGAA
Found at i:102710927 original size:85 final size:86
Alignment explanation
Indices: 102710838--102710998 Score: 288
Period size: 85 Copynumber: 1.9 Consensus size: 86
102710828 TTAGTGGGAC
*
102710838 TGAGAAAAAATTAGAAAGGGATATTATTAAGCAAAACAAAAGGGAAGAAATAAATAATTT-AAAA
1 TGAGAAAAAATTAGAAAGGGATATTATTAAGCAAAACAAAAGGAAAGAAATAAATAATTTAAAAA
102710902 AAAGAGAAGAAATAAATAATT
66 AAAGAGAAGAAATAAATAATT
*
102710923 TGAGAAAAAATTAGAAAGGGATATTATTAAGCAAAATAAAAGGAAAGAAATAAATAATTTAAAAA
1 TGAGAAAAAATTAGAAAGGGATATTATTAAGCAAAACAAAAGGAAAGAAATAAATAATTT-AAAA
102710988 AAAAGAGAAGA
65 AAAAGAGAAGA
102710999 TATTACAAGA
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
85 58 0.81
87 14 0.19
ACGTcount: A:0.62, C:0.02, G:0.17, T:0.19
Consensus pattern (86 bp):
TGAGAAAAAATTAGAAAGGGATATTATTAAGCAAAACAAAAGGAAAGAAATAAATAATTTAAAAA
AAAGAGAAGAAATAAATAATT
Found at i:102712070 original size:20 final size:21
Alignment explanation
Indices: 102712045--102712084 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102712035 TTTTTTAAAA
102712045 TATAAAT-TTTAT-AATTTTTT
1 TATAAATATTT-TGAATTTTTT
102712065 TATAAATATTTTGAATTTTT
1 TATAAATATTTTGAATTTTT
102712085 AAAATTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TATAAATATTTTGAATTTTTT
Found at i:102712933 original size:24 final size:24
Alignment explanation
Indices: 102712898--102712957 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
102712888 TCTTCTAGTT
* *
102712898 AAACTCTGATTATTTGTCTCATTC
1 AAACTCTGATTATTTGTCCCAGTC
*
102712922 AAACTCTAATTATTTGTCCCAGTC
1 AAACTCTGATTATTTGTCCCAGTC
*
102712946 GAACTCTGATTA
1 AAACTCTGATTA
102712958 GGGTAGATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (24 bp):
AAACTCTGATTATTTGTCCCAGTC
Found at i:102715392 original size:14 final size:13
Alignment explanation
Indices: 102715372--102715403 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
102715362 AATATTTAAC
102715372 TTGTTCTTAATTA
1 TTGTTCTTAATTA
102715385 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
102715399 TTGTT
1 TTGTT
102715404 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:102726379 original size:45 final size:45
Alignment explanation
Indices: 102726314--102726401 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
102726304 CTATGTGATT
* *
102726314 TGAACTCATTGAGTTGTGGTCTAAGTCCATGATATATATGGCATC
1 TGAACTCATTAAGTTATGGTCTAAGTCCATGATATATATGGCATC
* * *
102726359 TGAACTCATTAAGTTATGGTCTCAGTTCATGATGTATATGGCA
1 TGAACTCATTAAGTTATGGTCTAAGTCCATGATATATATGGCA
102726402 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (45 bp):
TGAACTCATTAAGTTATGGTCTAAGTCCATGATATATATGGCATC
Found at i:102728907 original size:25 final size:25
Alignment explanation
Indices: 102728873--102728923 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
102728863 CAAGGCTGCA
102728873 TGTTAGTTCTGAGTATGAAAGAGAG
1 TGTTAGTTCTGAGTATGAAAGAGAG
102728898 TGTTAGTTCTGAGTATGAAAGAGAG
1 TGTTAGTTCTGAGTATGAAAGAGAG
102728923 T
1 T
102728924 TTGTATGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.33
Consensus pattern (25 bp):
TGTTAGTTCTGAGTATGAAAGAGAG
Found at i:102736976 original size:32 final size:32
Alignment explanation
Indices: 102736918--102736979 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
102736908 ATTTAATTAG
**
102736918 TTAATATTATTATTATTAAGCTATAAATTATA
1 TTAATATTATTATTATTAAGAAATAAATTATA
*
102736950 TTAATTATTATTA-TATTATGAAATAAATTA
1 TTAA-TATTATTATTATTAAGAAATAAATTA
102736980 AGAAAAGACA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 18 0.69
33 8 0.31
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (32 bp):
TTAATATTATTATTATTAAGAAATAAATTATA
Found at i:102737079 original size:33 final size:33
Alignment explanation
Indices: 102737037--102737099 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
102737027 AAATAAGTAC
102737037 ATTTGTATTATTTATGTA-TAATTAGTGAAAATAT
1 ATTTGTATTATTTAT-TATTAATTAGT-AAAATAT
102737071 ATTT-TATTATTTATTATTAATTAGTAAAA
1 ATTTGTATTATTTATTATTAATTAGTAAAA
102737100 GAAATTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 6 0.21
33 18 0.64
34 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (33 bp):
ATTTGTATTATTTATTATTAATTAGTAAAATAT
Found at i:102737277 original size:15 final size:16
Alignment explanation
Indices: 102737247--102737279 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
102737237 TTTATTAATT
102737247 AATTAAATAGAAAACA
1 AATTAAATAGAAAACA
*
102737263 AATTAAA-ATAAAACA
1 AATTAAATAGAAAACA
102737278 AA
1 AA
102737280 AGGATATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.18
Consensus pattern (16 bp):
AATTAAATAGAAAACA
Found at i:102744092 original size:96 final size:95
Alignment explanation
Indices: 102743908--102744122 Score: 244
Period size: 96 Copynumber: 2.3 Consensus size: 95
102743898 CGATGCAACA
* *
102743908 TCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGATATGGTATTAC
1 TCCCAGACATGGTCTTACACTGGCTCATCCATCAAGCCGATGCCATGTCCCAGACATGGTATTAC
102743973 ACTAACTATCAAAATCAAGGCCGACGCCATG
66 ACTAACTATCAAAATCAAGGCCGACG-CATG
** *
102744004 TCCCAGACATGGTCTTACACTGGCTC-TCACATCTCCCTGCCGATGCCATGTCCCAGACATGGTT
1 TCCCAGACATGGTCTTACACTGGCTCATC-CA--T-CAAGCCGATGCCATGTCCCAGACATGGTA
* ** *
102744068 TTACACTGAC-A-C-ATCTCATA-GCCGATGCATG
62 TTACACTAACTATCAAAATCA-AGGCCGACGCATG
*
102744099 TCCCAGACAT-GTCTTACATTGGCT
1 TCCCAGACATGGTCTTACACTGGCT
102744123 TACATTTCGA
Statistics
Matches: 104, Mismatches: 10, Indels: 12
0.83 0.08 0.10
Matches are distributed among these distances:
94 13 0.12
95 16 0.15
96 38 0.37
97 2 0.02
98 2 0.02
99 33 0.32
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (95 bp):
TCCCAGACATGGTCTTACACTGGCTCATCCATCAAGCCGATGCCATGTCCCAGACATGGTATTAC
ACTAACTATCAAAATCAAGGCCGACGCATG
Found at i:102747120 original size:207 final size:207
Alignment explanation
Indices: 102746765--102747183 Score: 759
Period size: 207 Copynumber: 2.0 Consensus size: 207
102746755 TAGGTAGGTT
*
102746765 TTGCTAAAAATAGCATTTGAAATTCCTTCTTTTTCTACCACACATGGGCAGCCACATTGCAACGA
1 TTGCTAAAAATAGCATTTGAAATTCCTTCTTTTTCTACCACACATGGCCAGCCACATTGCAACGA
*
102746830 GAACGGGATGACTTAGTCTCTTCATTTTGAACTCAAACAAAGGCTATTAATAGCCATAGGGTGGA
66 GAACGGGATGACTTAGTCCCTTCATTTTGAACTCAAACAAAGGCTATTAATAGCCATAGGGTGGA
*
102746895 TGACTTTAAAAAGAAGTTTTTGGGCTGATTTCTGACT-ATTTTTCAATTGCAAGGACCTTCAATT
131 CGACTTTAAAAAGAAGTTTTTGGGCTGATTTCTGA-TAATTTTTCAATTGCAAGGACCTTCAATT
*
102746959 GAATACCCAAAGC
195 AAATACCCAAAGC
102746972 TTGCTAAAAATAGCATTTGAAATTCCTTCTTTTTCTACCACACATGGCCAGCCACATTGCAACGA
1 TTGCTAAAAATAGCATTTGAAATTCCTTCTTTTTCTACCACACATGGCCAGCCACATTGCAACGA
* *
102747037 GAAGGGGATGACTTAGTCCCTTCATTTTGAATTCAAACAAAGGCTATTAATAGCCATAGGGTGGA
66 GAACGGGATGACTTAGTCCCTTCATTTTGAACTCAAACAAAGGCTATTAATAGCCATAGGGTGGA
*
102747102 CGACTTTAAAAAGAAGTTTTTGGGCTGATTTTTGATAATTTTTCAATTGCAAGGACCTTCAATTA
131 CGACTTTAAAAAGAAGTTTTTGGGCTGATTTCTGATAATTTTTCAATTGCAAGGACCTTCAATTA
102747167 AATACCCAAAGC
196 AATACCCAAAGC
102747179 TTGCT
1 TTGCT
102747184 TTTGAGCAGC
Statistics
Matches: 204, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
206 1 0.00
207 203 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (207 bp):
TTGCTAAAAATAGCATTTGAAATTCCTTCTTTTTCTACCACACATGGCCAGCCACATTGCAACGA
GAACGGGATGACTTAGTCCCTTCATTTTGAACTCAAACAAAGGCTATTAATAGCCATAGGGTGGA
CGACTTTAAAAAGAAGTTTTTGGGCTGATTTCTGATAATTTTTCAATTGCAAGGACCTTCAATTA
AATACCCAAAGC
Found at i:102750384 original size:17 final size:17
Alignment explanation
Indices: 102750337--102750387 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
102750327 AAGCAATGAA
* *
102750337 TTTGCGGCAGCGATCGG
1 TTTGCGGCAGTGATAGG
102750354 TTTGCGGCAGTGATAGG
1 TTTGCGGCAGTGATAGG
102750371 TTTGCGGC-GATGATAGG
1 TTTGCGGCAG-TGATAGG
102750388 CATGTGACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 1 0.03
17 30 0.97
ACGTcount: A:0.16, C:0.16, G:0.41, T:0.27
Consensus pattern (17 bp):
TTTGCGGCAGTGATAGG
Found at i:102755934 original size:96 final size:95
Alignment explanation
Indices: 102755756--102755946 Score: 346
Period size: 96 Copynumber: 2.0 Consensus size: 95
102755746 GTTGCTTGTG
* *
102755756 ATCCTCTTAATGATCTTGTAAGCCTCGTTATAAGACTTAGAAAAATCTCACCATTCGCAGAAGCA
1 ATCCTCTTAATGATCTTGTAAGCCTCGCTATAAGACTTAGAAAAATCTCACCATTCACAGAAGCA
102755821 TCAACCATTAATCTTGAGTACACATTGAGA
66 TCAACCATTAATCTTGAGTACACATTGAGA
*
102755851 ATCCTCTTAATGATCTTGTAAGCCTCGCTATAAGACTTAGACAAAATCTCACCATTCATAGAAGC
1 ATCCTCTTAATGATCTTGTAAGCCTCGCTATAAGACTTAGA-AAAATCTCACCATTCACAGAAGC
102755916 ATCAACCATTAATCTTGAGTACACATTGAGA
65 ATCAACCATTAATCTTGAGTACACATTGAGA
102755947 CCATTATAAA
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
95 40 0.43
96 52 0.57
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (95 bp):
ATCCTCTTAATGATCTTGTAAGCCTCGCTATAAGACTTAGAAAAATCTCACCATTCACAGAAGCA
TCAACCATTAATCTTGAGTACACATTGAGA
Found at i:102758642 original size:90 final size:90
Alignment explanation
Indices: 102758450--102758663 Score: 232
Period size: 90 Copynumber: 2.4 Consensus size: 90
102758440 ACCAAATAGG
* * * * *
102758450 GTGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCGCACATTGATGCCATATTCCAGATA
1 GTGCCGAAGCCATGTCCCAGACATGGTCTTACACGGGACCGCACATCGATGCCATATCCCAGAAA
* * *
102758515 TGGTCTTATACGAAGTCTCAAATCA
66 TGATCTTATACGAAATCCCAAATCA
* * * * * *
102758540 GTGTCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCATGTCCCAGAAA
1 GTGCCGAAGCCATGTCCCAGACATGGTCTTACACGGGACCGCACATCGATGCCATATCCCAGAAA
** *
102758605 TGATCTTATACGAAATCCCTTA-CT
66 TGATCTTATACGAAATCCCAAATCA
* * *
102758629 GATGCCGAAGCCATATCCCTGATATGGTCTTACAC
1 G-TGCCGAAGCCATGTCCCAGACATGGTCTTACAC
102758664 AGGATCACGT
Statistics
Matches: 100, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 2 0.02
90 98 0.98
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (90 bp):
GTGCCGAAGCCATGTCCCAGACATGGTCTTACACGGGACCGCACATCGATGCCATATCCCAGAAA
TGATCTTATACGAAATCCCAAATCA
Found at i:102763278 original size:5 final size:5
Alignment explanation
Indices: 102763268--102763304 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
102763258 GAAGGTGTGA
102763268 AAAAT AAAAT AAAAT AAAA- AATAA- AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAA
102763305 GAACATACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:102765718 original size:14 final size:13
Alignment explanation
Indices: 102765694--102765723 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
102765684 GGTTGTTTAT
102765694 TAAACTAATTAAC
1 TAAACTAATTAAC
102765707 TAAACTTAATTAAC
1 TAAAC-TAATTAAC
102765721 TAA
1 TAA
102765724 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:102773743 original size:14 final size:13
Alignment explanation
Indices: 102773719--102773748 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
102773709 GGTTGTTTAT
102773719 TAAACTAATTAAC
1 TAAACTAATTAAC
102773732 TAAACTTAATTAAC
1 TAAAC-TAATTAAC
102773746 TAA
1 TAA
102773749 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:102793316 original size:47 final size:48
Alignment explanation
Indices: 102793229--102793341 Score: 142
Period size: 47 Copynumber: 2.4 Consensus size: 48
102793219 TAAGTTGCCG
* * *
102793229 ATGCTATGTCCCAGACATGGTCTTACACTGACTCGTATCTC-AAGTCA
1 ATGCCATGTCCCAGACATGGCCTTACACTGACTCATATCTCGAAGTCA
* *
102793276 ATGCCATGTCCCAGACATGGCCTTACACTGACT-ATCATCTCGTAGTCG
1 ATGCCATGTCCCAGACATGGCCTTACACTGACTCAT-ATCTCGAAGTCA
*
102793324 ATG-CATGTACCAGACATG
1 ATGCCATGTCCCAGACATG
102793342 TCTTACGCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.86
48 7 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGCCTTACACTGACTCATATCTCGAAGTCA
Found at i:102793471 original size:47 final size:47
Alignment explanation
Indices: 102793368--102793496 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 47
102793358 GTCTCGAGGA
* * * **
102793368 CGATGCATATCCCATACAT-GTCTTACACTAGCTCTCGTCTTAATGT
1 CGATGCATGTCCCATACATGGTTTTACACTAGCTCTCATAATAATGT
* **
102793414 CGATGCCATGTCCCATACATGGTTTTACACTGGCTCTCATAATGTTGT
1 CGATG-CATGTCCCATACATGGTTTTACACTAGCTCTCATAATAATGT
102793462 CGATGCATGTCCCATACATGGTTTTACACTAGCTC
1 CGATGCATGTCCCATACATGGTTTTACACTAGCTC
102793497 ACACACAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
46 5 0.07
47 42 0.58
48 25 0.35
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.34
Consensus pattern (47 bp):
CGATGCATGTCCCATACATGGTTTTACACTAGCTCTCATAATAATGT
Found at i:102797138 original size:59 final size:59
Alignment explanation
Indices: 102797063--102797180 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
102797053 TCAATGCATA
* *
102797063 AATGCTTATGTTTTAATTCAAGGTATATCAATCAAAATCATAAATCAATTAAAATTTAT
1 AATGCCTATGTTTTAATTCAAGATATATCAATCAAAATCATAAATCAATTAAAATTTAT
102797122 AATGCCTATGTTTTAATTCAAGATATATCAATCAAAATCATAAATCAATTAAAATTTAT
1 AATGCCTATGTTTTAATTCAAGATATATCAATCAAAATCATAAATCAATTAAAATTTAT
102797181 CCTAAATATG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (59 bp):
AATGCCTATGTTTTAATTCAAGATATATCAATCAAAATCATAAATCAATTAAAATTTAT
Found at i:102797476 original size:17 final size:17
Alignment explanation
Indices: 102797454--102797486 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
102797444 AAGGAGAAAA
102797454 AATGAATCTTAAAAACG
1 AATGAATCTTAAAAACG
102797471 AATGAATCTTAAAAAC
1 AATGAATCTTAAAAAC
102797487 TTAATAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:102811184 original size:47 final size:46
Alignment explanation
Indices: 102811113--102811376 Score: 273
Period size: 47 Copynumber: 5.6 Consensus size: 46
102811103 TGGGTAAGGT
*
102811113 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCT-ATCATCTCAA
* * *
102811160 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTATCATCTC-AA
* * * * *
102811208 GCTGATGCATGTCCCAGAAAT-GTCTTACACTAGCTTTCGTCTTAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCAA
* * * *
102811253 TGTCGATGCCATGTCCAAGACATGGTCTTACACTAACTATCATCTCGTA
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTATCATCTC-AA
* ** *
102811302 GCCGATGCATGTCCCAGACAT-GTCTTACACTTGCTCCCGTCTCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCAA
*
102811347 TGCCGATGCATGTCCTAGACATGGTCTTAC
1 -GCCGATGCATGTCCCAGACATGGTCTTAC
102811377 CCTGGATCTC
Statistics
Matches: 178, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.01
46 62 0.35
47 83 0.47
48 30 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCAA
Found at i:102811282 original size:94 final size:94
Alignment explanation
Indices: 102811113--102811376 Score: 372
Period size: 94 Copynumber: 2.8 Consensus size: 94
102811103 TGGGTAAGGT
* * *
102811113 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA-GTCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-ATCGTCTCAATGTCGATGCCATGTCCA
102811176 AGACATGGTCTTACACTAACTATCATCTCGTA
63 AGACATGGTCTTACACTAACTATCATCTCGTA
* * * *
102811208 GCTGATGCATGTCCCAGAAATGTCTTACACTAGCTTTCGTCTTAATGTCGATGCCATGTCCAAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCGTCTCAATGTCGATGCCATGTCCAAGA
102811273 CATGGTCTTACACTAACTATCATCTCGTA
66 CATGGTCTTACACTAACTATCATCTCGTA
* ** * *
102811302 GCCGATGCATGTCCCAGACATGTCTTACACTTGCTCCCGTCTCAATGCCGATG-CATGTCCTAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCGTCTCAATGTCGATGCCATGTCCAAGA
102811366 CATGGTCTTAC
66 CATGGTCTTAC
102811377 CCTGGATCTC
Statistics
Matches: 152, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 39 0.26
94 106 0.70
95 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (94 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCGTCTCAATGTCGATGCCATGTCCAAGA
CATGGTCTTACACTAACTATCATCTCGTA
Found at i:102811374 original size:141 final size:141
Alignment explanation
Indices: 102811115--102811376 Score: 325
Period size: 141 Copynumber: 1.9 Consensus size: 141
102811105 GGTAAGGTGC
* * ** *
102811115 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
1 CGATGCCATGTCCAAGACATGGTCTTACACTAACTCATATCTCAAGCCGATGCCATGTCCCAGAC
* * *
102811180 ATGGTCTTACACTAACTATCATCTCGTAGCTGATGCATGTCCCAGAAATGTCTTACACTAGCTTT
66 ATGGTCTTACACTAACTACCATCTCATAGCCGATGCATGTCCCAGAAATGTCTTACACTAGCTTT
102811245 CGTCTTAATGT
131 CGTCTTAATGT
*
102811256 CGATGCCATGTCCAAGACATGGTCTTACACTAACT-ATCATCTCGTAGCCGATG-CATGTCCCAG
1 CGATGCCATGTCCAAGACATGGTCTTACACTAACTCAT-ATCTC-AAGCCGATGCCATGTCCCAG
** * * * *
102811319 ACAT-GTCTTACACTTGCTCCCGTCTCA-ATGCCGATGCATGTCCTAGACATGGTCTTAC
64 ACATGGTCTTACACTAACTACCATCTCATA-GCCGATGCATGTCCCAGAAAT-GTCTTAC
102811377 CCTGGATCTC
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
139 1 0.01
140 37 0.36
141 57 0.56
142 7 0.07
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (141 bp):
CGATGCCATGTCCAAGACATGGTCTTACACTAACTCATATCTCAAGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAACTACCATCTCATAGCCGATGCATGTCCCAGAAATGTCTTACACTAGCTTT
CGTCTTAATGT
Found at i:102813653 original size:155 final size:154
Alignment explanation
Indices: 102813483--102813787 Score: 513
Period size: 155 Copynumber: 2.0 Consensus size: 154
102813473 TGATCGCCGC
* **
102813483 AAAAAAATTAACACAACGCCGTCGTTTTGTATTGAGCCTTTAGTGGCTTTAATGGCGCCTTTTAA
1 AAAAAAATTAACACAACACCGTCGTTTTGTATTGAGCCTTTAGTGGCTTTAACAGCGCCTTTTAA
102813548 AAACGCCACTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAAACGCCACTATATGTACACCTTTA
66 AAACGCCACTAAAGATCGAGTATTAGCGGCGCTTTTTT-AAAACGCCACTATATGTACACCTTTA
*
102813613 GC-AGTGCTTTTTAGAAAACGCTGCA
130 GCGA-CGCTTTTTAGAAAACGCTGCA
* *
102813638 AAAAAAATTAACACAACACCGTCGTTTTGTATTGAGCCTTTAGTGGCTTTAGCAGCGCTTTTTAA
1 AAAAAAATTAACACAACACCGTCGTTTTGTATTGAGCCTTTAGTGGCTTTAACAGCGCCTTTTAA
* *
102813703 AAACGCCTCTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAACGCCGCTATATGTACACCTTTAG
66 AAACGCCACTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAACGCCACTATATGTACACCTTTAG
102813768 CGACGCTTTTTAGAAAACGC
131 CGACGCTTTTTAGAAAACGC
102813788 CGTCGTTTTG
Statistics
Matches: 141, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
154 43 0.30
155 98 0.70
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (154 bp):
AAAAAAATTAACACAACACCGTCGTTTTGTATTGAGCCTTTAGTGGCTTTAACAGCGCCTTTTAA
AAACGCCACTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAACGCCACTATATGTACACCTTTAG
CGACGCTTTTTAGAAAACGCTGCA
Found at i:102814103 original size:22 final size:22
Alignment explanation
Indices: 102814078--102814123 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
102814068 GAGTTACTAT
* *
102814078 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAAGGG
* *
102814100 TTTAGGGATTATGGTTTAAGGG
1 TTTAAGGATTATGGATTAAGGG
102814122 TT
1 TT
102814124 GGGGTTTAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.46
Consensus pattern (22 bp):
TTTAAGGATTATGGATTAAGGG
Found at i:102814137 original size:21 final size:21
Alignment explanation
Indices: 102814101--102814160 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
102814091 GATTATGGGT
* *
102814101 TTAGGGATTATGGTTTAAGG-G
1 TTAGGGGTTAAGGTTT-AGGTG
102814122 TT-GGGGTTTAAGGTTTAGGTG
1 TTAGGGG-TTAAGGTTTAGGTG
*
102814143 TTAGGGGTTAAGGGTTAG
1 TTAGGGGTTAAGGTTTAG
102814161 AGGTCATGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 6 0.18
21 23 0.70
22 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (21 bp):
TTAGGGGTTAAGGTTTAGGTG
Found at i:102814208 original size:14 final size:14
Alignment explanation
Indices: 102814078--102814208 Score: 70
Period size: 14 Copynumber: 9.3 Consensus size: 14
102814068 GAGTTACTAT
* *
102814078 TTTAAGGTTTATGG
1 TTTATGGTTTAGGG
*
102814092 ATTATGGGTTTAGGG
1 TTTAT-GGTTTAGGG
*
102814107 ATTATGGTTTAAGGG
1 TTTATGGTTT-AGGG
** *
102814122 -TTGGGGTTTAAGG
1 TTTATGGTTTAGGG
102814135 TTTA-GGTGTTAGGG
1 TTTATGGT-TTAGGG
* * *
102814149 GTTAAGGGTTAGAGG
1 TTTATGGTTTAG-GG
* * *
102814164 -TCATGGTTCAAGG
1 TTTATGGTTTAGGG
* *
102814177 TTTATGTTTTAGGA
1 TTTATGGTTTAGGG
102814191 TTTATGGTTTAGGG
1 TTTATGGTTTAGGG
102814205 TTTA
1 TTTA
102814209 GGGATTATGA
Statistics
Matches: 88, Mismatches: 22, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
13 8 0.09
14 59 0.67
15 21 0.24
ACGTcount: A:0.21, C:0.02, G:0.35, T:0.43
Consensus pattern (14 bp):
TTTATGGTTTAGGG
Found at i:102814209 original size:7 final size:7
Alignment explanation
Indices: 102814078--102814211 Score: 51
Period size: 7 Copynumber: 19.0 Consensus size: 7
102814068 GAGTTACTAT
*
102814078 TTTAAGG
1 TTTAGGG
*
102814085 TTTATGG
1 TTTAGGG
*
102814092 ATTATGGG
1 TTTA-GGG
102814100 TTTAGGG
1 TTTAGGG
* *
102814107 ATTATGG
1 TTTAGGG
102814114 TTTAAGGG
1 TTT-AGGG
*
102814122 -TTGGGG
1 TTTAGGG
*
102814128 TTTAAGG
1 TTTAGGG
102814135 TTTA-GG
1 TTTAGGG
102814141 TGTTAGGGG
1 T-TTA-GGG
*
102814150 TTAAGGG
1 TTTAGGG
102814157 -TTAGAGG
1 TTTAG-GG
* *
102814164 -TCATGG
1 TTTAGGG
* *
102814170 TTCAAGG
1 TTTAGGG
* *
102814177 TTTATGT
1 TTTAGGG
*
102814184 TTTAGGA
1 TTTAGGG
*
102814191 TTTATGG
1 TTTAGGG
102814198 TTTAGGG
1 TTTAGGG
102814205 TTTAGGG
1 TTTAGGG
102814212 ATTATGAGTT
Statistics
Matches: 95, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
6 11 0.12
7 71 0.75
8 10 0.11
9 3 0.03
ACGTcount: A:0.20, C:0.01, G:0.37, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:102814362 original size:21 final size:21
Alignment explanation
Indices: 102814322--102814362 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
102814312 AATAATTTAT
* *
102814322 TTTAGGGTTTAAGGTTTATGA
1 TTTAAGGTTTAAGGTCTATGA
*
102814343 TTTAAGGTTTAATGTCTATG
1 TTTAAGGTTTAAGGTCTATG
102814363 GCTTGGGGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.49
Consensus pattern (21 bp):
TTTAAGGTTTAAGGTCTATGA
Found at i:102814675 original size:21 final size:21
Alignment explanation
Indices: 102814650--102814721 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
102814640 TTAGGGTGTA
* *
102814650 GGTTTATGGTCTAAGATTTAG
1 GGTTTAGGGTCTAAAATTTAG
102814671 GGTTTAGGGTCTAAAATTT-G
1 GGTTTAGGGTCTAAAATTTAG
* * **
102814691 AGGTTTGGGGTTTAATTTTTAG
1 -GGTTTAGGGTCTAAAATTTAG
*
102814713 TGTTTAGGG
1 GGTTTAGGG
102814722 GTAAATATTG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 1 0.02
21 39 0.95
22 1 0.02
ACGTcount: A:0.21, C:0.03, G:0.32, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTCTAAAATTTAG
Found at i:102815163 original size:14 final size:14
Alignment explanation
Indices: 102815144--102815203 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
102815134 AATCTTCAAA
102815144 AAAAATTAAAATTT
1 AAAAATTAAAATTT
*
102815158 AAAAATTAAAAATT
1 AAAAATTAAAATTT
102815172 AAAAACTTAAAAATTT
1 AAAAA-TT-AAAATTT
* * *
102815188 AATATTTAATATTT
1 AAAAATTAAAATTT
102815202 AA
1 AA
102815204 TATTTTAGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
14 26 0.67
15 4 0.10
16 9 0.23
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAAATTAAAATTT
Found at i:102815189 original size:8 final size:7
Alignment explanation
Indices: 102815144--102815186 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
102815134 AATCTTCAAA
102815144 AAAAATT
1 AAAAATT
*
102815151 AAAATTT
1 AAAAATT
102815158 AAAAATT
1 AAAAATT
102815165 AAAAATT
1 AAAAATT
102815172 AAAAACTT
1 AAAAA-TT
102815180 AAAAATT
1 AAAAATT
102815187 TAATATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (7 bp):
AAAAATT
Found at i:102815196 original size:15 final size:15
Alignment explanation
Indices: 102815151--102815196 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
102815141 AAAAAAAATT
*
102815151 AAAATTTAAAAATTA
1 AAAATTTAAAATTTA
* *
102815166 AAAATTAAAAACTTA
1 AAAATTTAAAATTTA
*
102815181 AAAATTTAATATTTA
1 AAAATTTAAAATTTA
102815196 A
1 A
102815197 TATTTAATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAATTTAAAATTTA
Found at i:102815985 original size:15 final size:15
Alignment explanation
Indices: 102815965--102815995 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102815955 CAAAATCTTC
102815965 TGTATGTTATGAAGT
1 TGTATGTTATGAAGT
102815980 TGTATGTTATGAAGT
1 TGTATGTTATGAAGT
102815995 T
1 T
102815996 TTTGATATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (15 bp):
TGTATGTTATGAAGT
Found at i:102816595 original size:27 final size:27
Alignment explanation
Indices: 102816565--102816619 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
102816555 AGACATGCAA
102816565 GTAAAAATGCAACTTTGGTTTTGGTAT
1 GTAAAAATGCAACTTTGGTTTTGGTAT
102816592 GTAAAAATGCAACTTTGGTTTTGGTAT
1 GTAAAAATGCAACTTTGGTTTTGGTAT
102816619 G
1 G
102816620 ATGGGCTAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (27 bp):
GTAAAAATGCAACTTTGGTTTTGGTAT
Found at i:102820235 original size:19 final size:19
Alignment explanation
Indices: 102820212--102820253 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
102820202 TTTTATTGAT
102820212 ATTTTTA-TATTTAATTTA
1 ATTTTTATTATTTAATTTA
*
102820230 ATTTTTATTATTTATTTTA
1 ATTTTTATTATTTAATTTA
*
102820249 GTTTT
1 ATTTT
102820254 GATTCTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
ATTTTTATTATTTAATTTA
Found at i:102824684 original size:42 final size:42
Alignment explanation
Indices: 102824625--102824711 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
102824615 GGATGAGTGA
*
102824625 ATTTGGTTGTTAATTTGGTTAAGTTGTTATTCATGATTTGGT
1 ATTTGGTTGTTAATTTGGTTAAGTTGTTATCCATGATTTGGT
102824667 ATTTGGTTGTTAATTTGGTTAAGTTGTTATCCATGATTTGGT
1 ATTTGGTTGTTAATTTGGTTAAGTTGTTATCCATGATTTGGT
102824709 ATT
1 ATT
102824712 AAAGGATGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.20, C:0.03, G:0.23, T:0.54
Consensus pattern (42 bp):
ATTTGGTTGTTAATTTGGTTAAGTTGTTATCCATGATTTGGT
Found at i:102826495 original size:26 final size:25
Alignment explanation
Indices: 102826451--102826505 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
102826441 TCTCATCCCA
*
102826451 ATTTTACTTCAGTAAAATTTTGATG
1 ATTTTACTTCAGTAAAATTTTGACG
*
102826476 ATTTTACTCTCGGTAAAATTTTGACG
1 ATTTTACT-TCAGTAAAATTTTGACG
102826502 ATTT
1 ATTT
102826506 CACCCCCAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTTTACTTCAGTAAAATTTTGACG
Found at i:102840846 original size:25 final size:25
Alignment explanation
Indices: 102840818--102840875 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
102840808 GTTGTAAACT
*
102840818 GTAAGCTCC-TCTGAGCTGAATAATG
1 GTAAGCTCCTTC-GAGCTGAATAACG
*
102840843 GTAAGCTCCTTCGAGCTGAGTAACG
1 GTAAGCTCCTTCGAGCTGAATAACG
102840868 GTAAGCTC
1 GTAAGCTC
102840876 ATGCAAGCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.93
26 2 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
GTAAGCTCCTTCGAGCTGAATAACG
Found at i:102840884 original size:25 final size:25
Alignment explanation
Indices: 102840831--102840907 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 25
102840821 AGCTCCTCTG
* * * * *
102840831 AGCTGAATAATGGTAAGCTCCTTCG
1 AGCTGAGTAACGGTAAGCTCATACA
*
102840856 AGCTGAGTAACGGTAAGCTCATGCA
1 AGCTGAGTAACGGTAAGCTCATACA
* *
102840881 AGCTGAGTATCGATAAGCTCATACA
1 AGCTGAGTAACGGTAAGCTCATACA
102840906 AG
1 AG
102840908 TTGAAATCGG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.23
Consensus pattern (25 bp):
AGCTGAGTAACGGTAAGCTCATACA
Found at i:102847343 original size:41 final size:41
Alignment explanation
Indices: 102847298--102847427 Score: 188
Period size: 41 Copynumber: 3.2 Consensus size: 41
102847288 GAGCCACATA
* *
102847298 CCCGTGTGAGATAGGGAACACGCCCGTGTGCTCTCAACATG
1 CCCGTGTGAGATAAGGAACACGCCCGTGTGCTCTCAACACG
* * * *
102847339 CCCGTGTGAAATATGGAACAAGCTCGTGTGCTCTCAACACG
1 CCCGTGTGAGATAAGGAACACGCCCGTGTGCTCTCAACACG
*
102847380 ACCGTGTGAGATAAGGAACACGCCCGTGTGCTCTCAACACG
1 CCCGTGTGAGATAAGGAACACGCCCGTGTGCTCTCAACACG
*
102847421 CCTGTGT
1 CCCGTGT
102847428 CTTCCGGCCG
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (41 bp):
CCCGTGTGAGATAAGGAACACGCCCGTGTGCTCTCAACACG
Found at i:102847420 original size:19 final size:19
Alignment explanation
Indices: 102847314--102847427 Score: 66
Period size: 19 Copynumber: 5.7 Consensus size: 19
102847304 TGAGATAGGG
102847314 AACACGCCCGTGTGCTCTC
1 AACACGCCCGTGTGCTCTC
* * * *
102847333 AACATGCCCGTGTGAAATATGG
1 AACACGCCCGTGTG--CTCT-C
* *
102847355 AACAAGCTCGTGTGCTCTC
1 AACACGCCCGTGTGCTCTC
* * ***
102847374 AACACGACCGTGTGAGATAAGG
1 AACACGCCCGTGT--GCT-CTC
102847396 AACACGCCCGTGTGCTCTC
1 AACACGCCCGTGTGCTCTC
*
102847415 AACACGCCTGTGT
1 AACACGCCCGTGT
102847428 CTTCCGGCCG
Statistics
Matches: 67, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
19 35 0.52
20 4 0.06
21 4 0.06
22 24 0.36
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (19 bp):
AACACGCCCGTGTGCTCTC
Found at i:102848980 original size:52 final size:52
Alignment explanation
Indices: 102848900--102849007 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
102848890 AAACCCAGTT
**
102848900 ACATGTATCGCATCCATTATGAACTCAGACCAACTCATTGAGCTCGGATGCC
1 ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCGGATGCC
*
102848952 ACATGTATCGCATCCATTATGAATTCAGACCAACTCAACGAGCTCGGATGCC
1 ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCGGATGCC
102849004 ACAT
1 ACAT
102849008 ACATATCACA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (52 bp):
ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCGGATGCC
Found at i:102852107 original size:10 final size:10
Alignment explanation
Indices: 102852092--102852139 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
102852082 GATTCTGTGG
102852092 ATATTTAAAA
1 ATATTTAAAA
102852102 ATATTTAACATA
1 ATATTTAA-A-A
* *
102852114 TGTATTTAAAT
1 -ATATTTAAAA
102852125 ATATTTAAAA
1 ATATTTAAAA
102852135 ATATT
1 ATATT
102852140 AAATTAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
10 21 0.68
11 1 0.03
12 2 0.06
13 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (10 bp):
ATATTTAAAA
Found at i:102852155 original size:33 final size:32
Alignment explanation
Indices: 102852092--102852174 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 32
102852082 GATTCTGTGG
102852092 ATATTTAAAAATATTTAACA-TATGTATTTAAAT
1 ATATTTAAAAATA-TTAA-ATTATGTATTTAAAT
102852125 ATATTTAAAAATATTAAATTAAT-TATTTTAAAT
1 ATATTTAAAAATATTAAATT-ATGTA-TTTAAAT
*
102852158 AAATTT-AAAATA-TAAAT
1 ATATTTAAAAATATTAAAT
102852175 ATTTATGCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
31 6 0.13
32 13 0.28
33 27 0.59
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (32 bp):
ATATTTAAAAATATTAAATTATGTATTTAAAT
Found at i:102852506 original size:21 final size:22
Alignment explanation
Indices: 102852463--102852509 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
102852453 ACATTTTTAA
*
102852463 TTTTTTAAAATACAATTTAAAT
1 TTTTTTAAAATACAATTAAAAT
102852485 TTTTTTAAAA-A-AATTAATAAT
1 TTTTTTAAAATACAATTAA-AAT
102852506 TTTT
1 TTTT
102852510 AACAATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 8 0.35
22 10 0.43
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTTTAAAATACAATTAAAAT
Found at i:102853100 original size:27 final size:26
Alignment explanation
Indices: 102853070--102853120 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
102853060 ATTTTTGCAT
* *
102853070 TTTTTTAATTTTTAAATATTCTTTTTC
1 TTTTATAATTTTTAAAGATT-TTTTTC
102853097 TTTTATAATTTTTAAAGATTTTTT
1 TTTTATAATTTTTAAAGATTTTTT
102853121 GATCAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTTATAATTTTTAAAGATTTTTTTC
Found at i:102854411 original size:31 final size:31
Alignment explanation
Indices: 102854240--102854419 Score: 119
Period size: 31 Copynumber: 6.0 Consensus size: 31
102854230 TTGGCATCTG
* * *
102854240 AACTTGACACGTTTTCCTAATTTGGTGCCTA
1 AACTTGACTCTTTTTCCTAATTTGGTACCTA
**
102854271 AACTT---T-TTTTT-AAAATTTGGTACCTA
1 AACTTGACTCTTTTTCCTAATTTGGTACCTA
* * *
102854297 AACTTGTCATTTTTTTCCTAATTTGATACCTA
1 AACTTGAC-TCTTTTTCCTAATTTGGTACCTA
* * * *
102854329 AACTTGACACTTTTTCTTAAGTTGGTACTTA
1 AACTTGACTCTTTTTCCTAATTTGGTACCTA
* * *
102854360 AACTT---T-TTTGGGGTCC-AATTTGATACCTG
1 AACTTGACTCTTT---TTCCTAATTTGGTACCTA
102854389 AACTTGACTCTTTTTCCTAATTTGGTACCTA
1 AACTTGACTCTTTTTCCTAATTTGGTACCTA
102854420 TTTTTTTTTG
Statistics
Matches: 110, Mismatches: 25, Indels: 28
0.67 0.15 0.17
Matches are distributed among these distances:
26 17 0.15
27 7 0.06
29 14 0.13
30 6 0.05
31 43 0.39
32 20 0.18
33 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (31 bp):
AACTTGACTCTTTTTCCTAATTTGGTACCTA
Found at i:102856060 original size:26 final size:26
Alignment explanation
Indices: 102856031--102856082 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
102856021 TGTTCTATAG
*
102856031 TACCAACACTCTTGTAGACTCTAGGC
1 TACCAACACTCTTGAAGACTCTAGGC
*
102856057 TACCAACACTCTTGAAGATTCTAGGC
1 TACCAACACTCTTGAAGACTCTAGGC
102856083 AGCTTGTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
TACCAACACTCTTGAAGACTCTAGGC
Found at i:102858131 original size:16 final size:16
Alignment explanation
Indices: 102858110--102858157 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
102858100 TGGGGGAATG
102858110 GAATAGAACTGTAATA
1 GAATAGAACTGTAATA
**
102858126 GAATAGAGTTGTAATA
1 GAATAGAACTGTAATA
*
102858142 GAATAGACCTGTAATA
1 GAATAGAACTGTAATA
102858158 ATAATTCAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (16 bp):
GAATAGAACTGTAATA
Found at i:102858332 original size:23 final size:25
Alignment explanation
Indices: 102858306--102858408 Score: 68
Period size: 26 Copynumber: 4.1 Consensus size: 25
102858296 ATAGATAATT
*
102858306 ATTATTTTTAAAT-T-TTTAATAAA
1 ATTATTATTAAATATATTTAATAAA
102858329 ATTATTATTAAATATAATTTAATAAA
1 ATTATTATTAAATAT-ATTTAATAAA
* * ** * *
102858355 A-AATAATTTGATCATATTTTAACATA
1 ATTATTATTAAAT-ATA-TTTAATAAA
* *
102858381 AGTATTATTAAATAAAATTTAATAAA
1 ATTATTATTAAAT-ATATTTAATAAA
102858407 AT
1 AT
102858409 AATATATAAT
Statistics
Matches: 58, Mismatches: 16, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
23 12 0.21
24 1 0.02
25 8 0.14
26 28 0.48
27 9 0.16
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
ATTATTATTAAATATATTTAATAAA
Found at i:102858349 original size:26 final size:26
Alignment explanation
Indices: 102858320--102858408 Score: 81
Period size: 26 Copynumber: 3.4 Consensus size: 26
102858310 TTTTTAAATT
102858320 TTTAATAAAATTATTATTAAATATAA
1 TTTAATAAAATTATTATTAAATATAA
* * ** *
102858346 TTTAATAAAA-AATAATTTGATCATAT
1 TTTAATAAAATTATTATTAAAT-ATAA
* * * *
102858372 TTTAACATAAGTATTATTAAATAAAA
1 TTTAATAAAATTATTATTAAATATAA
102858398 TTTAATAAAAT
1 TTTAATAAAAT
102858409 AATATATAAT
Statistics
Matches: 45, Mismatches: 16, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
25 7 0.16
26 31 0.69
27 7 0.16
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
TTTAATAAAATTATTATTAAATATAA
Found at i:102858475 original size:24 final size:23
Alignment explanation
Indices: 102858448--102858497 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
102858438 TATTATTAAA
*
102858448 ATATGAAT-TAATAAAAATCATAAT
1 ATAT-AATATAATAAAAATAAT-AT
*
102858472 ATATAATATTATAAAAATAATAT
1 ATATAATATAATAAAAATAATAT
102858495 ATA
1 ATA
102858498 ACTACTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
ATATAATATAATAAAAATAATAT
Found at i:102864062 original size:16 final size:16
Alignment explanation
Indices: 102864041--102864073 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102864031 CAAAAAAGTG
102864041 ATAAAAAAGTA-AAAAA
1 ATAAAAAA-TACAAAAA
102864057 ATAAAAAATACAAAAA
1 ATAAAAAATACAAAAA
102864073 A
1 A
102864074 ATTGTGTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (16 bp):
ATAAAAAATACAAAAA
Found at i:102865072 original size:20 final size:20
Alignment explanation
Indices: 102865047--102865091 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
102865037 AGGAACTAAA
* *
102865047 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
102865067 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
102865087 ATGAA
1 ATGAA
102865092 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:102866277 original size:13 final size:13
Alignment explanation
Indices: 102866259--102866288 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
102866249 TTTTGGGTAT
102866259 ATTTAGTGAAATC
1 ATTTAGTGAAATC
102866272 ATTTAGTGAAATC
1 ATTTAGTGAAATC
102866285 ATTT
1 ATTT
102866289 TGGTATAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (13 bp):
ATTTAGTGAAATC
Found at i:102879651 original size:27 final size:28
Alignment explanation
Indices: 102879593--102879682 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
102879583 AGGAAGCGTC
*
102879593 CTGGTGGCTA-TGCCACAAACTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
102879621 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
102879648 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
102879677 CTGGTG
1 CTGGTG
102879683 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:102879693 original size:29 final size:28
Alignment explanation
Indices: 102879603--102879693 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
102879593 CTGGTGGCTA
* * *
102879603 TGCCACAAACTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
102879631 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
102879658 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
102879687 TGTCACA
1 TGCCACA
102879694 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:102879701 original size:55 final size:56
Alignment explanation
Indices: 102879593--102879707 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
102879583 AGGAAGCGTC
* * *
102879593 CTGGTGGCTATGCCACAAACTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
102879648 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
102879704 CTGG
1 CTGG
102879708 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:102880715 original size:42 final size:42
Alignment explanation
Indices: 102880656--102880867 Score: 275
Period size: 42 Copynumber: 5.3 Consensus size: 42
102880646 AAAGAAAGCA
* *
102880656 TTCATTGTATTTAGAGGCCTAGGTGTGAAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
102880698 TTCATTGCATTTAGAGGCAC-AAGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGC-CTAGGTGTGGAGGTCCATTTACTT
102880740 TTCATTGCATTTAGAGGCCTAGGTGT---GG-------ACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
102880772 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
102880814 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCTATTTACTTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTAC-TT
102880857 TTCATTGCATT
1 TTCATTGCATT
102880868 GTATATGAAG
Statistics
Matches: 152, Mismatches: 5, Indels: 25
0.84 0.03 0.14
Matches are distributed among these distances:
32 30 0.20
35 2 0.01
39 2 0.01
41 1 0.01
42 103 0.68
43 14 0.09
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.40
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
Found at i:102880772 original size:32 final size:32
Alignment explanation
Indices: 102880736--102880800 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
102880726 AGGTCCATTT
102880736 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
1 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
102880768 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
1 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
102880800 A
1 A
102880801 GGTCTATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.20, C:0.15, G:0.28, T:0.37
Consensus pattern (32 bp):
ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
Found at i:102880815 original size:74 final size:74
Alignment explanation
Indices: 102880694--102880842 Score: 255
Period size: 74 Copynumber: 2.0 Consensus size: 74
102880684 AGGTCCATTT
102880694 ACTTTTCATTGCATTTAGAGGCACAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCC
1 ACTTTTCATTGCATTTAGAGGCACAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCC
*
102880759 TAGGTGTGG
66 CAGGTGTGG
* *
102880768 ACTTTTCATTGCATTTAGAGGC-CTAGGTGTGGAGGTCTATTTACTTTTCATTGCATTTAGAGGC
1 ACTTTTCATTGCATTTAGAGGCAC-AAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGC
102880832 CCAGGTGTGG
65 CCAGGTGTGG
102880842 A
1 A
102880843 GGTCTATTTA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
73 1 0.01
74 70 0.99
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (74 bp):
ACTTTTCATTGCATTTAGAGGCACAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCC
CAGGTGTGG
Found at i:102883355 original size:39 final size:39
Alignment explanation
Indices: 102883298--102883448 Score: 187
Period size: 39 Copynumber: 3.9 Consensus size: 39
102883288 AACACACCAC
*
102883298 CACAGCCTGCTA-AGCACATAGCCCGAATAATCACCGACA
1 CACAACCTGCTAGA-CACATAGCCCGAATAATCACCGACA
* * * *
102883337 CACAGCCTGTTAGACACATAGCCCGAATAATTACCGTCA
1 CACAACCTGCTAGACACATAGCCCGAATAATCACCGACA
* * * *
102883376 GACAACCTGCTAGGCACTTAGCCCGAATAATCACCGGCA
1 CACAACCTGCTAGACACATAGCCCGAATAATCACCGACA
* *
102883415 CACAACCTGCTAGGCACATAGCCCAAATAATCAC
1 CACAACCTGCTAGACACATAGCCCGAATAATCAC
102883449 TAGGACACAG
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
39 97 0.99
40 1 0.01
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (39 bp):
CACAACCTGCTAGACACATAGCCCGAATAATCACCGACA
Found at i:102883457 original size:39 final size:38
Alignment explanation
Indices: 102883298--102883486 Score: 182
Period size: 39 Copynumber: 4.9 Consensus size: 38
102883288 AACACACCAC
* *
102883298 CACAGCCTGCTAAGCACATAGCCCGAATAATCACC-GA
1 CACAACCTGCTAGGCACATAGCCCGAATAATCACCGGA
* * * *
102883335 CACACAGCCTGTTAGACACATAGCCCGAATAATTACCGTCA
1 CACA-A-CCTGCTAGGCACATAGCCCGAATAATCACCG-GA
* *
102883376 GACAACCTGCTAGGCACTTAGCCCGAATAATCACCGGCA
1 CACAACCTGCTAGGCACATAGCCCGAATAATCACCGG-A
* *
102883415 CACAACCTGCTAGGCACATAGCCCAAATAATCACTAGGA
1 CACAACCTGCTAGGCACATAGCCCGAATAATCAC-CGGA
* ** * * *
102883454 CACAGCCTAATAGGCACTTATCCCAAATAATCA
1 CACAACCTGCTAGGCACATAGCCCGAATAATCA
102883487 TCGTATTTCT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
37 4 0.03
39 114 0.91
40 3 0.02
41 4 0.03
ACGTcount: A:0.35, C:0.32, G:0.15, T:0.17
Consensus pattern (38 bp):
CACAACCTGCTAGGCACATAGCCCGAATAATCACCGGA
Found at i:102883468 original size:78 final size:78
Alignment explanation
Indices: 102883311--102883486 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 78
102883301 AGCCTGCTAA
* * * * *
102883311 GCACATAGCCCGAATAATCACCGACACACAGCCTGTTAGACACATAGCCCGAATAATTACCGTCA
1 GCACTTAGCCCGAATAATCACCGACACACAACCTGCTAGACACATAGCCCAAATAATCACCGTCA
**
102883376 GACAACCTGCTAG
66 GACAACCTAATAG
* *
102883389 GCACTTAGCCCGAATAATCACCGGCACACAACCTGCTAGGCACATAGCCCAAATAATCA-C-T-A
1 GCACTTAGCCCGAATAATCACCGACACACAACCTGCTAGACACATAGCCCAAATAATCACCGTCA
102883451 GGACACAGCCTAATAG
66 -GACA-A-CCTAATAG
* *
102883467 GCACTTATCCCAAATAATCA
1 GCACTTAGCCCGAATAATCA
102883487 TCGTATTTCT
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
75 1 0.01
76 5 0.06
77 2 0.02
78 76 0.90
ACGTcount: A:0.36, C:0.32, G:0.15, T:0.17
Consensus pattern (78 bp):
GCACTTAGCCCGAATAATCACCGACACACAACCTGCTAGACACATAGCCCAAATAATCACCGTCA
GACAACCTAATAG
Found at i:102893686 original size:53 final size:53
Alignment explanation
Indices: 102893605--102893755 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
102893595 CTTACACGGT
* *
102893605 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
102893660 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
102893713 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
102893756 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:102901297 original size:15 final size:15
Alignment explanation
Indices: 102901277--102901333 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
102901267 CGATGAATTT
*
102901277 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
102901292 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
102901307 ATTGAAATTATATTG
1 ATTGAAATTATATTG
102901322 ATTG-AATTATAT
1 ATTGAAATTATAT
102901334 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:102901758 original size:21 final size:21
Alignment explanation
Indices: 102901732--102901787 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
102901722 CGTATTTCAG
102901732 GCACCTCGTGTGTCGTATCAA
1 GCACCTCGTGTGTCGTATCAA
*
102901753 GCACCTCGTGTGTCGTATCAG
1 GCACCTCGTGTGTCGTATCAA
102901774 GCACCTCGTGTGTC
1 GCACCTCGTGTGTC
102901788 ATTTTAGGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.14, C:0.30, G:0.27, T:0.29
Consensus pattern (21 bp):
GCACCTCGTGTGTCGTATCAA
Found at i:102901796 original size:21 final size:21
Alignment explanation
Indices: 102901728--102901798 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
102901718 TTGTCGTATT
*
102901728 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCATA
* *
102901749 TCAAGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCATA
*
102901770 TCAGGCACCTCGTGTGTCATT
1 TCAGGCACCTCGTGTGTCATA
*
102901791 TTAGGCAC
1 TCAGGCAC
102901799 TTTATGTGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.30
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCATA
Found at i:102901807 original size:42 final size:42
Alignment explanation
Indices: 102901704--102901812 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
102901694 GGCTTTATCG
* *
102901704 ATCAGGCACTTTATTTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTA--TCAGGCACCTCGTGTGTCAT
* * **
102901748 ATCAAGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCAT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCAT
* *
102901790 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
102901813 ACTGACCAGG
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 36 0.68
44 17 0.32
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCAT
Found at i:102903022 original size:44 final size:44
Alignment explanation
Indices: 102902973--102903095 Score: 167
Period size: 44 Copynumber: 2.8 Consensus size: 44
102902963 ACGGTGTAAC
* *
102902973 AGCCAACACCAGTACATAGTACCAGCTTAATATAAATGGCACAT
1 AGCCAACACCGGTACATAGTACCAGCTGAATATAAATGGCACAT
* * *
102903017 AGCCAACATCGGTGCATAGTACCTGCTGAATATAAATGGCACAT
1 AGCCAACACCGGTACATAGTACCAGCTGAATATAAATGGCACAT
* * *
102903061 AGCCAAAACCGGTACATAGTACTA-TTGAATATAAA
1 AGCCAACACCGGTACATAGTACCAGCTGAATATAAA
102903096 CCCTAATGGC
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
43 10 0.15
44 58 0.85
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (44 bp):
AGCCAACACCGGTACATAGTACCAGCTGAATATAAATGGCACAT
Found at i:102904838 original size:40 final size:40
Alignment explanation
Indices: 102904758--102904843 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
102904748 AATTATGGGA
** *
102904758 TACTGAATATTGTTTTGAATACCGAATTGAACTATGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTATAAAAT
* * * *
102904798 TACTGAATATTGTTACGTATACTGTATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTATAAAAT
*
102904838 TTCTGA
1 TACTGA
102904844 TGAAACGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTATAAAAT
Found at i:102905155 original size:6 final size:6
Alignment explanation
Indices: 102905144--102905187 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
102905134 GTGTGTTGAA
* * *
102905144 TACTGT TACTGT TACTGT TATTGC TACCGT TACTGAT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T
102905188 TAGGTACTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
TACTGT
Done.