Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 308 of 349
Found at i:102905160 original size:45 final size:45
Alignment explanation
Indices: 102905055--102905163 Score: 157
Period size: 45 Copynumber: 2.4 Consensus size: 45
102905045 GACTACTGTA
* * *
102905055 ACTGTTACCGTTACTATTACTGATTCGACACTTTGTGTGTCGAAT
1 ACTGTTACCGTTACTGTTACAGATTAGACACTTTGTGTGTCGAAT
*
102905100 ACTGTTACCGTTACTGTTACAGATTTAG-CACTTTGTGTGTTGAAT
1 ACTGTTACCGTTACTGTTACAGA-TTAGACACTTTGTGTGTCGAAT
*
102905145 ACTGTTACTGTTACTGTTA
1 ACTGTTACCGTTACTGTTA
102905164 TTGCTACCGT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 55 0.95
46 3 0.05
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.42
Consensus pattern (45 bp):
ACTGTTACCGTTACTGTTACAGATTAGACACTTTGTGTGTCGAAT
Found at i:102909851 original size:12 final size:12
Alignment explanation
Indices: 102909834--102909864 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
102909824 GAAGCAGGGG
102909834 AGAAAAAGGGAA
1 AGAAAAAGGGAA
102909846 AGAAAAAGGGAA
1 AGAAAAAGGGAA
102909858 AGAAAAA
1 AGAAAAA
102909865 TAAAAGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (12 bp):
AGAAAAAGGGAA
Found at i:102910643 original size:40 final size:40
Alignment explanation
Indices: 102910574--102910654 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
102910564 AATTATGGGA
** *
102910574 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
* * *
102910614 TACTGAATATTGTTACGTATACTGTATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
102910654 T
1 T
102910655 TTTTATGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
Found at i:102910936 original size:39 final size:39
Alignment explanation
Indices: 102910882--102910967 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
102910872 ACTGTTACCA
* * *
102910882 TTACTATTACTGATTC-GACACTTTGTGTGTCGAATACTG
1 TTACTGTTACAGATTCAG-CACTTTGTGTATCGAATACTG
*
102910921 TTACTGTTACAGATTCAGCACTTTGTGTATTGAATACTG
1 TTACTGTTACAGATTCAGCACTTTGTGTATCGAATACTG
102910960 TTACTGTT
1 TTACTGTT
102910968 CTTATTATTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 41 0.98
40 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.17, T:0.43
Consensus pattern (39 bp):
TTACTGTTACAGATTCAGCACTTTGTGTATCGAATACTG
Found at i:102913836 original size:13 final size:13
Alignment explanation
Indices: 102913818--102913847 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
102913808 TTTTGGTTTA
*
102913818 ATTTTCTATTTTT
1 ATTTTCTATTTTG
102913831 ATTTTCTATTTTG
1 ATTTTCTATTTTG
102913844 ATTT
1 ATTT
102913848 AATCCCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (13 bp):
ATTTTCTATTTTG
Found at i:102914041 original size:41 final size:41
Alignment explanation
Indices: 102913984--102914061 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
102913974 TATAATTTCG
* *
102913984 ATTTTAGAGGTAAGAATTTTATATTTGATGGATTCGACTCA
1 ATTTTAAAGGTAAGAATTTTATATTTGATAGATTCGACTCA
102914025 ATTTTAAAGGTAAGAATTTTATATTTGATAGATTCGA
1 ATTTTAAAGGTAAGAATTTTATATTTGATAGATTCGA
102914062 TACCCATCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (41 bp):
ATTTTAAAGGTAAGAATTTTATATTTGATAGATTCGACTCA
Found at i:102922449 original size:20 final size:19
Alignment explanation
Indices: 102922424--102922498 Score: 51
Period size: 20 Copynumber: 3.8 Consensus size: 19
102922414 CACATACATG
*
102922424 CCCCTGTTTGTACTTCGGTA
1 CCCCTGATTGTACTTC-GTA
* * *
102922444 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTAC-TTCGTA
* * **
102922464 CCCCTGTTTATACTTTAATA
1 CCCCTGATTGTAC-TTCGTA
102922484 CCCCTGATTGTACTT
1 CCCCTGATTGTACTT
102922499 TGGTGCCCTT
Statistics
Matches: 40, Mismatches: 14, Indels: 3
0.70 0.25 0.05
Matches are distributed among these distances:
19 2 0.05
20 36 0.90
21 2 0.05
ACGTcount: A:0.17, C:0.31, G:0.15, T:0.37
Consensus pattern (19 bp):
CCCCTGATTGTACTTCGTA
Found at i:102922506 original size:40 final size:40
Alignment explanation
Indices: 102922408--102922493 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
102922398 AATTATTATA
* * **
102922408 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTATACTTCAATACCCC
*
102922448 TGATTGCACATACGTGCCCCTGTTTATACTTTAATACCCC
1 TGATTGCACATACGTGCCCCTGTTTATACTTCAATACCCC
102922488 TGATTG
1 TGATTG
102922494 TACTTTGGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTATACTTCAATACCCC
Found at i:102922548 original size:60 final size:59
Alignment explanation
Indices: 102922418--102922576 Score: 162
Period size: 60 Copynumber: 2.7 Consensus size: 59
102922408 TGATTGCACA
* * *
102922418 TACATGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTATAC
1 TACATGCCCCTGATTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTGTTCATAC
* * * *
102922477 TTTA-ATACCCCTGATTGTACTTTGGTGCCCTTAATTGCACATACGTGCCCCTGGTTGCATAC
1 --TACATGCCCCTGATTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCT-GTT-CATAC
* * *
102922539 -ACATGCCCCTAATTATACTTCAGTACCCCTGAA-TGCAC
1 TACATGCCCCTGATTGTACTTCGGTACCCCT-AATTGCAC
102922577 TTCGTACCCC
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
59 1 0.01
60 68 0.85
61 7 0.09
62 4 0.05
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.33
Consensus pattern (59 bp):
TACATGCCCCTGATTGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTGTTCATAC
Found at i:102922567 original size:20 final size:19
Alignment explanation
Indices: 102922544--102922596 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
102922534 CATACACATG
102922544 CCCCTAATTATACTTCAGTA
1 CCCCTAATTATACTTC-GTA
**
102922564 CCCCTGAA-TGCACTTCGTA
1 CCCCT-AATTATACTTCGTA
*
102922583 CCCCTATTTATACT
1 CCCCTAATTATACT
102922597 CCGGTAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
18 1 0.04
19 12 0.46
20 11 0.42
21 2 0.08
ACGTcount: A:0.25, C:0.34, G:0.08, T:0.34
Consensus pattern (19 bp):
CCCCTAATTATACTTCGTA
Found at i:102923657 original size:48 final size:48
Alignment explanation
Indices: 102923586--102923685 Score: 155
Period size: 48 Copynumber: 2.1 Consensus size: 48
102923576 TATGCATGTG
102923586 AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
1 AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
* * * * *
102923634 AATGATTGGTTTATGCTAGTATTACCATGTTGAATTATATGAGGTTTA
1 AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
102923682 AATG
1 AATG
102923686 TTTTCGATTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (48 bp):
AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
Found at i:102925722 original size:20 final size:20
Alignment explanation
Indices: 102925678--102925722 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
102925668 TCACAGGGGT
*
102925678 GTGTGTCTATCCACACGGGC
1 GTGTGTCTATCCACACAGGC
*
102925698 ATGTGTCTATCCACACAGGC
1 GTGTGTCTATCCACACAGGC
102925718 GTGTG
1 GTGTG
102925723 AGGGGTTGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.27
Consensus pattern (20 bp):
GTGTGTCTATCCACACAGGC
Found at i:102928989 original size:11 final size:11
Alignment explanation
Indices: 102928975--102929030 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
102928965 AGATAAATAT
102928975 TATTTTATTAA
1 TATTTTATTAA
*
102928986 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
102928999 TATTTTATTAT
1 TATTTTATTAA
* *
102929010 TATTTTTTTAT
1 TATTTTATTAA
102929021 TATTTTATTA
1 TATTTTATTA
102929031 GTATATAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
11 25 0.66
12 6 0.16
13 7 0.18
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:102929018 original size:27 final size:28
Alignment explanation
Indices: 102928943--102929019 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 28
102928933 GAGATATTTT
* * **
102928943 GATATTCTATAATTATTTAATTAGATAA
1 GATATTTTATTATTATTTTTTTAGATAA
* *
102928971 -ATATTATT-TTATTAATATTTTA-ATAA
1 GATATT-TTATTATTATTTTTTTAGATAA
102928997 GATATTTTATTATTATTTTTTTA
1 GATATTTTATTATTATTTTTTTA
102929020 TTATTTTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
26 6 0.16
27 31 0.82
28 1 0.03
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (28 bp):
GATATTTTATTATTATTTTTTTAGATAA
Found at i:102930927 original size:46 final size:46
Alignment explanation
Indices: 102930875--102931240 Score: 439
Period size: 46 Copynumber: 8.0 Consensus size: 46
102930865 GGTCTCTGAA
** *
102930875 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
102930921 ATGAAAT-ATGTAAAACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
102930967 ATGAAATGTGTAAAACCATGGATGAAAGATATCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
102931013 ATGAAAAGAATAAGATCATGGTTGAGAGATACCATAGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
102931059 GGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
102931105 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
102931151 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
102931197 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
102931241 TCAAAGAAAA
Statistics
Matches: 277, Mismatches: 40, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.00
46 276 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:102931123 original size:138 final size:138
Alignment explanation
Indices: 102930885--102931240 Score: 505
Period size: 138 Copynumber: 2.6 Consensus size: 138
102930875 ATGAAATGTG
* * * *
102930885 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAAACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* ** *
102930950 CACCATGGCAACATGATATGAAATGTGTAAAACCATGGATGAAAGATATCATGGCAACGTGACAT
66 CACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
102931015 GAAAAGAA
131 GAAAAGAA
* * * * *
102931023 TAAGATCATGGTTGAGAGATACCATAGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* * * * *
102931088 TACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
66 CACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
102931153 GAAAAGAA
131 GAAAAGAA
* * *
102931161 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* *
102931226 CACTATGGCATCATG
66 CACCATGGCAACATG
102931241 TCAAAGAAAA
Statistics
Matches: 188, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
138 188 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
CACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
GAAAAGAA
Found at i:102934095 original size:22 final size:22
Alignment explanation
Indices: 102934065--102934131 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
102934055 ATGTATTTAC
*
102934065 TTATTATTTAAGAAAT-TAATAA
1 TTATAATTTAA-AAATATAATAA
*
102934087 TTATAATTTAATAATATAATAA
1 TTATAATTTAAAAATATAATAA
*
102934109 -TATAATAGTTAATAATATAATAA
1 TTATAAT--TTAAAAATATAATAA
102934132 AAGAAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.22
22 16 0.40
23 15 0.38
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (22 bp):
TTATAATTTAAAAATATAATAA
Found at i:102934123 original size:23 final size:22
Alignment explanation
Indices: 102934081--102934131 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
102934071 TTTAAGAAAT
102934081 TAATAATTATAATTTAATAATA
1 TAATAATTATAATTTAATAATA
102934103 TAATAA-TATAATAGTTAATAATA
1 TAATAATTATAAT--TTAATAATA
102934126 TAATAA
1 TAATAA
102934132 AAGAAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.22
22 6 0.22
23 15 0.56
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
TAATAATTATAATTTAATAATA
Found at i:102934140 original size:12 final size:11
Alignment explanation
Indices: 102934125--102934176 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 11
102934115 AGTTAATAAT
102934125 ATAATAAAAGAA
1 ATAA-AAAAGAA
102934137 ATAATAAAAG-A
1 ATAA-AAAAGAA
102934148 ATAAAGAAATGAA
1 ATAAA-AAA-GAA
102934161 ATAGAAAAAGAA
1 ATA-AAAAAGAA
102934173 ATAA
1 ATAA
102934177 CGACAAGGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 1 0.03
11 9 0.25
12 17 0.47
13 7 0.19
14 2 0.06
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (11 bp):
ATAAAAAAGAA
Found at i:102935068 original size:24 final size:24
Alignment explanation
Indices: 102935041--102935088 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
102935031 AGGTACTTTG
102935041 TACCTGACTATGACTGTTACTGTT
1 TACCTGACTATGACTGTTACTGTT
102935065 TACCTGACTATGACTGTTACTGTT
1 TACCTGACTATGACTGTTACTGTT
102935089 ACTGTTACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (24 bp):
TACCTGACTATGACTGTTACTGTT
Found at i:102935086 original size:6 final size:6
Alignment explanation
Indices: 102935077--102935108 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
102935067 CCTGACTATG
102935077 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
102935109 CCTACGGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (6 bp):
ACTGTT
Found at i:102941529 original size:8 final size:8
Alignment explanation
Indices: 102941510--102941555 Score: 62
Period size: 8 Copynumber: 6.1 Consensus size: 8
102941500 TTTAAGAAAT
102941510 TAATAAT-
1 TAATAATA
102941517 T-ATAATA
1 TAATAATA
102941524 TAATAATA
1 TAATAATA
102941532 TAATAATA
1 TAATAATA
*
102941540 TAATAGT-
1 TAATAATA
102941547 TAATAATA
1 TAATAATA
102941555 T
1 T
102941556 TGCAAAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 5 0.15
7 8 0.24
8 21 0.62
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (8 bp):
TAATAATA
Found at i:102949895 original size:16 final size:15
Alignment explanation
Indices: 102949869--102949903 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
102949859 TTATGTGAAT
102949869 AATATAAAATATTAA
1 AATATAAAATATTAA
*
102949884 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
102949900 AATA
1 AATA
102949904 ATAATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:102950756 original size:11 final size:12
Alignment explanation
Indices: 102950715--102950765 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 12
102950705 GAAAAATGTA
102950715 ATTTTTT-TTAT
1 ATTTTTTATTAT
*
102950726 ATTTGTTTTGTATAT
1 A-TT-TTTTAT-TAT
102950741 ATATTTTTATTAT
1 AT-TTTTTATTAT
102950754 ATTTTTTATTAT
1 ATTTTTTATTAT
102950766 GATGTATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
11 1 0.03
12 12 0.35
13 9 0.26
14 7 0.21
15 5 0.15
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.73
Consensus pattern (12 bp):
ATTTTTTATTAT
Found at i:102950837 original size:18 final size:18
Alignment explanation
Indices: 102950802--102950855 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
102950792 CGAAAAAAGG
102950802 AAAAA-AATAAA-AA-AT
1 AAAAATAATAAAGAAGAT
*
102950817 AAAAATAA-AAATAAGAGT
1 AAAAATAATAAAGAAGA-T
102950835 -AAAATAATAAAGAAGAT
1 AAAAATAATAAAGAAGAT
102950852 AAAA
1 AAAA
102950856 TCACCTTTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
15 8 0.25
16 4 0.12
17 9 0.28
18 11 0.34
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (18 bp):
AAAAATAATAAAGAAGAT
Found at i:102950840 original size:17 final size:17
Alignment explanation
Indices: 102950818--102950856 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
102950808 ATAAAAAATA
*
102950818 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
102950835 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
102950852 AAAAT
1 AAAAT
102950857 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:102951264 original size:227 final size:230
Alignment explanation
Indices: 102950869--102951331 Score: 851
Period size: 227 Copynumber: 2.0 Consensus size: 230
102950859 CCTTTAGGTA
102950869 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
1 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
102950934 TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
66 TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
102950999 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGC-AGGTGGCTAGGG
131 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
*
102951063 TTTCTTG-GTTTTTTTGGTGGGGGTTAGGTTTTT-
196 TTTCTTGTGTTTTTTTGGGGGGGGTTAGGTTTTTC
* *
102951096 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCTCCTCCTTTACATGATTTTTGAATGGC
1 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
* *
102951161 TTTTTATAGCCATTTTTTACATGATTTTCTTTTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
66 TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
102951226 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
131 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
*
102951291 TTTCTTGTTTTTTTTTGGGGGGGGTTAGGTTTTTC
196 TTTCTTGTGTTTTTTTGGGGGGGGTTAGGTTTTTC
102951326 TTTTTT
1 TTTTTT
102951332 TTTTTTTTGG
Statistics
Matches: 227, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
227 178 0.78
228 19 0.08
229 24 0.11
230 6 0.03
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.43
Consensus pattern (230 bp):
TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
TTTCTTGTGTTTTTTTGGGGGGGGTTAGGTTTTTC
Found at i:102952260 original size:92 final size:86
Alignment explanation
Indices: 102952028--102952550 Score: 347
Period size: 87 Copynumber: 5.9 Consensus size: 86
102952018 AAAACTAGAC
* * * *
102952028 ATTAAAAACAGA-AATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAAT
1 ATTAAAAACA-ATAATTGAAAATACCTC-G-ACGTGTGCCTGAGGCTCAACTCACCTCTCGCAAT
*
102952091 ATGAGTTGATTTTT-AAAACA-AA
63 ATGAGTTGATTTTTGCAAACATAA
* * ** * * *
102952113 ATTTGTAAAAC-ATATTATGAAAATACCTCGATATGTGACCCGAAGCTCAACTCACCTCTCGTAA
1 A-TT-AAAAACAATAAT-TGAAAATACCTCGACGTGTG-CCTGAGGCTCAACTCACCTCTCGCAA
102952177 TATGAGTTGATTTTTGCAAAGCATAA
62 TATGAGTTGATTTTTGCAAA-CATAA
*
102952203 ATTAAAAAAACACATCAATTGAAAATACCTCGGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCA
1 ATT--AAAAACA-AT-AATTGAAAATACCTCGACGTGT-GCCTGAGGCTCAACTCACCTCTCGCA
102952268 ATATGAGTTGATTTTTTTTGACAAACATAA
61 ATATGAGTTGA---TTTTTG-CAAACATAA
* * *
102952298 ATTGAAAA-AA-AATTGAAAATACCTCAACGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATG
1 ATTAAAAACAATAATTGAAAATACCTCGACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATG
*
102952360 AGTTGATTTTTTTTGGAAAAACA-AA
66 AGTTGA---TTTTT-G-CAAACATAA
* * ** * *
102952385 ATTTTAAAAATAGA-ATTTGAAAATACCTC-AGCGTGTGAGTCAAGGCTCAACTCACCACTCGCA
1 A--TTAAAAACA-ATAATTGAAAATACCTCGA-CGTGTGCCT-GAGGCTCAACTCACCTCTCGCA
* * * *
102952448 ACATGAGCTGATTTTTTTGAAACACAGAA
61 ATATGAGTTGA--TTTTTGCAA-ACATAA
* * * * * *
102952477 ATTGAAGAACAGA-AATGGAAAACACCTC-A-GCGT-CTTGAGGTTCAACTCACCTCTCGCAATA
1 ATT-AAAAACA-ATAATTGAAAATACCTCGACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATA
*
102952538 TGAGCTGATTTTT
64 TGAGTTGATTTTT
102952551 TTGAAAGACA
Statistics
Matches: 363, Mismatches: 46, Indels: 58
0.78 0.10 0.12
Matches are distributed among these distances:
85 11 0.03
86 7 0.02
87 125 0.34
88 11 0.03
89 33 0.09
90 15 0.04
91 45 0.12
92 63 0.17
93 35 0.10
95 14 0.04
96 4 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (86 bp):
ATTAAAAACAATAATTGAAAATACCTCGACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGCAAACATAA
Found at i:102952462 original size:180 final size:177
Alignment explanation
Indices: 102952029--102953207 Score: 592
Period size: 169 Copynumber: 6.9 Consensus size: 177
102952019 AAACTAGACA
* ** *
102952029 TTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * *
102952094 AGTTGA--TTTTT-AAAACAAAATTTGTAAAACATATTATGAAAATACCTCGATATGTGACCCGA
66 AGTTGATTTTTTTGAAAACAAAA-TTG-AAAACAAAAT-TGAAAATACCTC-A-A-GTGTCCTGA
* * * *
102952156 AGCTCAACTCACCTCTCGTAATATGAGTTGA---TTTTTGCAAAGCATAAATT
125 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
** * * *
102952206 AAAAAAACACATCAATTGAAAATACCTCGGCGTGTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTAAAAACAGA--AATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
102952270 ATGAGTTGATTTTTTTTGACAAACATAAATTGAAAA-AAAATTGAAAATACCTCAACGTGTCCTG
63 ATGAGTTGA-TTTTTTTGA-AAACA-AAATTGAAAACAAAATTGAAAATACCTCAA-GTGTCCTG
*
102952334 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AAATT
124 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT-GAAAAACATAAATT
* * * * *
102952388 TTAAAAATAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAACATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * * *
102952453 AGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTC-AGCGTCTTGAGG
66 AGTTGATTTTTTTGAAA-ACA-AAATTGAA-AACA-AAATTGAAAATACCTCAAGTGTCCTGAGG
* *
102952517 TTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTG-------------
127 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* * ** *
102952554 --AAAGACAGAAATTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTTGCAATAT
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATAT
* * ** * *
102952614 GAGTTGA--TTTTTG-AAACTTAACTTGAAAAGCAGATTTTGAAAATGCCTCGATA-TGTGACTC
65 GAGTTGATTTTTTTGAAAAC-AAAATTGAAAA-CA-AAATTGAAAATACCTC-A-AGTGT-CCT-
* * * * ** *
102952675 AAGACTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTGAAAGGCAGAAA-T
123 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* * * * **
102952729 TGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * * * *
102952794 AGTTGA-----TTG-AAA-AAAA---AATAC----CT--CAGT--GT---GTGAT-CTGAAGCTC
66 AGTTGATTTTTTTGAAAACAAAATTGAAAACAAAATTGAAAATACCTCAAGTG-TCCTGAGGCTC
102952837 AACTCACCTCTCGCAATATGAGTTGA--TTTTTTG-------------
130 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* * * *
102952870 --AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * ** *
102952933 AGTCGATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCT
66 AGTTGA-TTTTTTTGAAA-ACA-AAATTG-AAAAC-AAAATTGAAAATACCTC-AAGTGT--CCT
*
102952998 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGAC-------
123 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* ** *
102953045 ------A-A-AAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTTAACTCACCTCTCGCAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
** * * **
102953102 AGTCAATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCT
66 AGTTGA-TTTTTTTGAAA-ACA-AAATTG-AAAAC-AAAATTGAAAATACCTC-AAGTGT--CCT
* * *
102953167 GAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTT
123 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
102953208 TACAACAGAA
Statistics
Matches: 811, Mismatches: 107, Indels: 175
0.74 0.10 0.16
Matches are distributed among these distances:
139 59 0.07
145 3 0.00
146 2 0.00
148 1 0.00
149 3 0.00
153 11 0.01
155 28 0.03
156 2 0.00
157 4 0.00
158 25 0.03
159 2 0.00
160 10 0.01
161 3 0.00
162 56 0.07
163 10 0.01
164 27 0.03
165 2 0.00
166 3 0.00
168 34 0.04
169 152 0.19
170 9 0.01
171 4 0.00
174 2 0.00
176 6 0.01
177 35 0.04
178 6 0.01
179 146 0.18
180 89 0.11
181 16 0.02
182 39 0.05
183 11 0.01
184 8 0.01
185 3 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (177 bp):
TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAAACAAAATTGAAAACAAAATTGAAAATACCTCAAGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
Found at i:102952504 original size:91 final size:85
Alignment explanation
Indices: 102952219--102952801 Score: 405
Period size: 87 Copynumber: 6.7 Consensus size: 85
102952209 AAAACACATC
* *
102952219 AATTGAAAATACCTCGGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGT----TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
*
102952284 TTTGACAAACATAAATTGAAAAA-A
62 TTTGA-AAACAGAAATTGAAAAAGA
* * *
102952308 AATTGAAAATACCTCAACGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGT--TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
*
102952373 TGGAAAAACA-AAATTTTAAAAATAGA
64 T-G-AAAACAGAAA--TTGAAAA-AGA
* * * *
102952399 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAACATGAGCTGA-TTTT
1 AATTGAAAATACCTCAGCGTGT---T-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
102952463 TTTGAAACACAGAAATTGAAGAACAGA
62 TTTGAAA-ACAGAAATTGAA-AA-AGA
* * * *
102952490 AATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT-
1 AATTGAAAATACCTCAGCGTGTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTG
*
102952553 ------GAAA--G--ACAGA
66 AAAACAGAAATTGAAAAAGA
* * *
102952563 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA---TTTT
1 AATTGAAAATACCTCAGCGTG--TTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
** *
102952625 TG-AAACTTAACTTGAAAAGCAGA
64 TGAAAACAGAAATTGAAAA--AGA
** * ** ** * *
102952648 TTTTGAAAATGCCTCGATATGTGACTCAAGACTCAACTCACCTCTCGTAATATGAG-TCGATTTT
1 AATTGAAAATACCTC-A-GCGTG--TTGAGGCTCAACTCACCTCTCGCAATATGAGCT-GATTTT
*
102952712 TTTTGAAAGGCAGAAATTGAAAAACGGA
61 TTTTGAAA-ACAGAAATTGAAAAA--GA
* *
102952740 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AATTGAAAATACCTCAGC--GTG-T-TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
102952802 GAAAAAAAAA
Statistics
Matches: 396, Mismatches: 59, Indels: 75
0.75 0.11 0.14
Matches are distributed among these distances:
73 25 0.06
74 1 0.00
75 32 0.08
77 1 0.00
79 6 0.02
81 1 0.00
83 1 0.00
85 15 0.04
86 2 0.01
87 115 0.29
88 7 0.02
89 27 0.07
90 15 0.04
91 51 0.13
92 68 0.17
93 29 0.07
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (85 bp):
AATTGAAAATACCTCAGCGTGTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTG
AAAACAGAAATTGAAAAAGA
Found at i:102952611 original size:75 final size:73
Alignment explanation
Indices: 102952485--102952625 Score: 210
Period size: 75 Copynumber: 1.9 Consensus size: 73
102952475 AAATTGAAGA
*
102952485 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
102952550 TTTGAAAG
66 TTTGAAAG
* * * * *
102952558 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATT
1 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
102952623 TTT
64 TTT
102952626 GAAACTTAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 18 0.30
74 1 0.02
75 41 0.68
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (73 bp):
ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTGAAAG
Found at i:102952793 original size:92 final size:89
Alignment explanation
Indices: 102952551--102952801 Score: 260
Period size: 92 Copynumber: 2.8 Consensus size: 89
102952541 GCTGATTTTT
* * * *
102952551 TTGAAAGACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
** *
102952614 GAGTTGA--TTTTTGAAACTTAAC
66 GAGTTGATTTTTTTGAAACAGAAA
* ** * ** * * *
102952636 TTGAAAAGCAGATTTTGAAAATGCCTCGATATGTGA-CTCAAGACTCAACTCACCTCTCGTAATA
1 TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCT-GAGGCTCAACTCACCTCTCGCAATA
*
102952700 TGAGTCGATTTTTTTTGAAAGGCAGAAA
65 TGAGTTGA-TTTTTTTGAAA--CAGAAA
* *
102952728 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
102952793 GAGTTGATT
66 GAGTTGATT
102952802 GAAAAAAAAA
Statistics
Matches: 128, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
85 26 0.20
86 1 0.01
87 28 0.22
90 9 0.07
91 2 0.02
92 60 0.47
93 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (89 bp):
TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAACAGAAA
Found at i:102952815 original size:63 final size:63
Alignment explanation
Indices: 102952745--102952864 Score: 213
Period size: 63 Copynumber: 1.9 Consensus size: 63
102952735 ACGGAAATTG
* *
102952745 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAA
1 AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAA
*
102952808 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATT
102952865 TTTTGAAAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (63 bp):
AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAA
Found at i:102953024 original size:92 final size:91
Alignment explanation
Indices: 102952867--102953056 Score: 263
Period size: 92 Copynumber: 2.1 Consensus size: 91
102952857 AGTTGATTTT
* * *
102952867 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* *
102952932 GAGTCGATTTTTTTTGAAAGGCAGAAA
66 GAGTCGA-TTTTTTTGAAAGACAAAAA
* * * * **
102952959 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
102953024 GAGTTGATTTTTTTGAAAGACAAAAA
66 GAGTCGATTTTTTTGAAAGACAAAAA
102953050 TTGAAAA
1 TTGAAAA
102953057 TAGCTCAGCA
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
91 24 0.28
92 62 0.72
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (91 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTTTGAAAGACAAAAA
Found at i:102953091 original size:169 final size:168
Alignment explanation
Indices: 102952808--102953282 Score: 715
Period size: 169 Copynumber: 2.8 Consensus size: 168
102952798 GATTGAAAAA
* * *
102952808 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
*
102952872 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGC-CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTC
102952937 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
102952976 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* *
102953041 AGACAAAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTTAACTCACCTCTCGCAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGC-CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTC
*
102953106 AATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * * * *
102953145 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTTA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA
* * * * * *
102953210 CA-ACAGAAATTGAAATTACCTCAG-CGTG-TCCTGAGGCTCAACTCACCTCTCACAATATGAGT
65 AAGACAGAAATTGAAAATAGCTCAGCCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
*
102953272 TGATTTTTTTT
129 CGATTTTTTTT
102953283 AAAAAAATAC
Statistics
Matches: 281, Mismatches: 23, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
166 2 0.01
167 40 0.14
168 52 0.19
169 178 0.63
170 9 0.03
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (168 bp):
AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AGACAGAAATTGAAAATAGCTCAGCCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCG
ATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:102953281 original size:77 final size:76
Alignment explanation
Indices: 102953138--102953406 Score: 235
Period size: 64 Copynumber: 3.7 Consensus size: 76
102953128 TTGAAAAACG
* * *
102953138 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTT
102953203 TTTTTTACAACA
65 TTTTTTACAACA
* * *
102953215 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
102953278 TTTTT------
66 TTTTTACAACA
* * * *
102953283 -AAA---AAAATACCTCAGCGCGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
***
102953342 TTGAAACATACGA
66 TTTTTACA-AC-A
* * * * * *
102953355 AAAATTGACAATACCTCAGCATGT-CCCGAGGCTCAACTCACCTCTCGCAATA
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATA
102953407 TGAATTGAAT
Statistics
Matches: 164, Mismatches: 16, Indels: 25
0.80 0.08 0.12
Matches are distributed among these distances:
64 55 0.34
67 3 0.02
73 3 0.02
74 8 0.05
75 32 0.20
76 41 0.25
77 22 0.13
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (76 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
TTTTTACAACA
Found at i:102961016 original size:16 final size:15
Alignment explanation
Indices: 102960990--102961024 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
102960980 TGATGTGAAT
102960990 AATATAAAATATTAA
1 AATATAAAATATTAA
*
102961005 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
102961021 AATA
1 AATA
102961025 ATAATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:102961613 original size:28 final size:25
Alignment explanation
Indices: 102961589--102961638 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
102961579 TATATATAGC
*
102961589 TAAATATAATTAATAATAACAATATA
1 TAAAAATAA-TAATAATAACAATATA
* *
102961615 TAAAAATAATAGTGATAACAATAT
1 TAAAAATAATAATAATAACAATAT
102961639 TACATATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (25 bp):
TAAAAATAATAATAATAACAATATA
Found at i:102961889 original size:13 final size:13
Alignment explanation
Indices: 102961843--102961893 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
102961833 AAAAATGTAA
102961843 TTTTTT-TTATAT
1 TTTTTTATTATAT
*
102961855 TTGTTTTGTATATAT
1 TT-TTTTAT-TATAT
*
102961870 ATTTTTATTATAT
1 TTTTTTATTATAT
102961883 TTTTTTATTAT
1 TTTTTTATTAT
102961894 GATGTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 2 0.06
13 19 0.58
14 6 0.18
15 6 0.18
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTATTATAT
Found at i:102961959 original size:17 final size:17
Alignment explanation
Indices: 102961939--102961977 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
102961929 GAAAAAAATA
*
102961939 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
102961956 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
102961973 AAAAT
1 AAAAT
102961978 CGCCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:102962781 original size:36 final size:35
Alignment explanation
Indices: 102962711--102962780 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 35
102962701 GATTAAACAA
* **
102962711 TAATTTTAGAATTTTAAAAAATATTTTTGAAAAAT
1 TAATTTTAAAATTTTAAAAAATATTAGTGAAAAAT
*
102962746 TAATTTTAAAGATTTTAAATAATTATTAGTGAAAA
1 TAATTTTAAA-ATTTTAAA-AAATATTAGTGAAAA
102962781 TAATCAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 9 0.31
36 8 0.28
37 12 0.41
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (35 bp):
TAATTTTAAAATTTTAAAAAATATTAGTGAAAAAT
Found at i:102974604 original size:24 final size:24
Alignment explanation
Indices: 102974574--102974628 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
102974564 CTGTGGAGAT
* *
102974574 TGATGATGCTT-TGGTGATTGAAGA
1 TGATGATACTTCTGATGA-TGAAGA
*
102974598 TGATGATATTTCTGATGATGAAGA
1 TGATGATACTTCTGATGATGAAGA
102974622 TGATGAT
1 TGATGAT
102974629 CATGAAGACG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.38
Consensus pattern (24 bp):
TGATGATACTTCTGATGATGAAGA
Found at i:102979220 original size:15 final size:15
Alignment explanation
Indices: 102979200--102979230 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102979190 ATCGACAATA
102979200 TAGATGGCGGTTTGT
1 TAGATGGCGGTTTGT
102979215 TAGATGGCGGTTTGT
1 TAGATGGCGGTTTGT
102979230 T
1 T
102979231 CATGTGGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.06, G:0.39, T:0.42
Consensus pattern (15 bp):
TAGATGGCGGTTTGT
Found at i:102979425 original size:29 final size:29
Alignment explanation
Indices: 102979392--102979452 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
102979382 TGGTGGTTGA
* * *
102979392 AAGCGGATGGTCTGTTAGAGGTCAAAAGT
1 AAGCGGATGGTCTGCTAGAGGGCAAAAAT
*
102979421 AAGCGGATGGTTTGCTAGAGGGCAAAAAT
1 AAGCGGATGGTCTGCTAGAGGGCAAAAAT
102979450 AAG
1 AAG
102979453 TAGTGTGAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.10, G:0.34, T:0.21
Consensus pattern (29 bp):
AAGCGGATGGTCTGCTAGAGGGCAAAAAT
Found at i:102980412 original size:13 final size:13
Alignment explanation
Indices: 102980394--102980421 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
102980384 GCACGATCCC
102980394 TGCATGGTCACCT
1 TGCATGGTCACCT
102980407 TGCATGGTCACCT
1 TGCATGGTCACCT
102980420 TG
1 TG
102980422 GCTGCTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (13 bp):
TGCATGGTCACCT
Found at i:102981561 original size:21 final size:21
Alignment explanation
Indices: 102981529--102981569 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
102981519 AGGCTCGAGG
102981529 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
102981550 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
102981570 CCAAATGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:102984704 original size:26 final size:26
Alignment explanation
Indices: 102984674--102984725 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
102984664 CACCGCTGAA
*
102984674 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
102984700 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
102984726 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:102984855 original size:104 final size:103
Alignment explanation
Indices: 102984642--102984907 Score: 444
Period size: 104 Copynumber: 2.6 Consensus size: 103
102984632 TAACCGTTAT
* **
102984642 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
102984707 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
102984745 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
102984810 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
102984849 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
102984908 TTATATACAA
Statistics
Matches: 153, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 56 0.37
104 96 0.63
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:102985267 original size:29 final size:29
Alignment explanation
Indices: 102985234--102985297 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
102985224 TAATCCACCA
102985234 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
102985263 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
102985293 CCCAA
1 CCCAA
102985298 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:102985271 original size:30 final size:30
Alignment explanation
Indices: 102985241--102985297 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
102985231 CCACCCAACT
102985241 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
102985270 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
102985298 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:102992281 original size:104 final size:105
Alignment explanation
Indices: 102992101--102992368 Score: 441
Period size: 104 Copynumber: 2.6 Consensus size: 105
102992091 TAACCGTTAT
* **
102992101 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
102992166 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
102992205 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
102992270 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* * **
102992310 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGAGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
102992369 TTATATACAA
Statistics
Matches: 153, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.54
105 70 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:102992737 original size:30 final size:30
Alignment explanation
Indices: 102992703--102992760 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
102992693 CCACCCAACT
102992703 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
*** * *
102992733 TTTTGCGTAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
102992761 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:102995047 original size:13 final size:13
Alignment explanation
Indices: 102995029--102995053 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102995019 CACGATCCCT
102995029 GCATGGTCACCTC
1 GCATGGTCACCTC
102995042 GCATGGTCACCT
1 GCATGGTCACCT
102995054 TGGCTGCTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (13 bp):
GCATGGTCACCTC
Found at i:102997527 original size:14 final size:14
Alignment explanation
Indices: 102997486--102997527 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
102997476 TTGTTATTAA
*
102997486 ATTTTAATAAAATT
1 ATTTTAATAAAAAT
*
102997500 ATTTT--TAAATAT
1 ATTTTAATAAAAAT
102997512 ATTTTAATAAAAAT
1 ATTTTAATAAAAAT
102997526 AT
1 AT
102997528 AAATAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 10 0.43
14 13 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTTAATAAAAAT
Found at i:102997534 original size:26 final size:26
Alignment explanation
Indices: 102997486--102997535 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
102997476 TTGTTATTAA
* ***
102997486 ATTTTAATAAAATTATTTTTAAATAT
1 ATTTTAATAAAAATATAAATAAATAT
102997512 ATTTTAATAAAAATATAAATAAAT
1 ATTTTAATAAAAATATAAATAAAT
102997536 TTAATCATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATTTTAATAAAAATATAAATAAATAT
Found at i:102997608 original size:56 final size:58
Alignment explanation
Indices: 102997490--102997618 Score: 156
Period size: 56 Copynumber: 2.3 Consensus size: 58
102997480 TATTAAATTT
* * * * * * *
102997490 TAATAAAATTATTTTTAAATATATTTTAATAAAAATATAAATAAATTTAATCATATTT
1 TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATAAATTTAATAACATTC
*
102997548 TAATATAATT-TTATTAAATACAATTTAAT-AAAATA-ATATATAATTTAATAACATTC
1 TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATA-AATTTAATAACATTC
102997604 TAATATAATTATTAT
1 TAATATAATTATTAT
102997619 ATGAATTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
55 4 0.07
56 28 0.46
57 20 0.33
58 9 0.15
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (58 bp):
TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATAAATTTAATAACATTC
Found at i:102998171 original size:26 final size:26
Alignment explanation
Indices: 102998135--102998187 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
102998125 TAGAAAGAAG
102998135 ATAAATGAATGATTAACAACAATCTA
1 ATAAATGAATGATTAACAACAATCTA
102998161 ATAAATGAATGATTAACAACAATCTA
1 ATAAATGAATGATTAACAACAATCTA
102998187 A
1 A
102998188 CTTTAGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (26 bp):
ATAAATGAATGATTAACAACAATCTA
Found at i:103002264 original size:21 final size:21
Alignment explanation
Indices: 103002240--103002279 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
103002230 GGCAAAAATG
103002240 AAAAAAATAATCTTTTCAGAA
1 AAAAAAATAATCTTTTCAGAA
103002261 AAAAAAATAATCTTTTCAG
1 AAAAAAATAATCTTTTCAG
103002280 CATTCCTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAAAAATAATCTTTTCAGAA
Found at i:103005453 original size:44 final size:44
Alignment explanation
Indices: 103005356--103005467 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 44
103005346 ATACCAGCAA
** * *
103005356 CGAGTAAGACCATGACTGAAAA-ATGTTATGGTATCACGATTCTAT
1 CGAGTAAGACCAT-ACT-AAAAGACATTATGGAATCACGATTATAT
* * *
103005401 TGAATAAGACCATACTAAAAGACATTATGGAATCATGATTATAT
1 CGAGTAAGACCATACTAAAAGACATTATGGAATCACGATTATAT
*
103005445 CGAGTAAGACCATAGCTGAAAGA
1 CGAGTAAGACCATA-CTAAAAGA
103005468 TGCTATGGCA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 4 0.07
44 33 0.60
45 18 0.33
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (44 bp):
CGAGTAAGACCATACTAAAAGACATTATGGAATCACGATTATAT
Found at i:103005504 original size:45 final size:46
Alignment explanation
Indices: 103005313--103005571 Score: 138
Period size: 45 Copynumber: 5.7 Consensus size: 46
103005303 CCAGAGAATA
* *
103005313 AATAAGACCATAGTTGAAAGATACTATGGCA-C-C-ATACCAGCAACG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGA-ATCA-CAACG
* * ** * * * **
103005358 AGTAAGACCAT-GACTGAAAAATGTTATGGTATCACGATTC-TATTG
1 AATAAGACCATAG-CTGAAAGATACTATGGCATCACGAATCACAACG
* * * * * * * *
103005403 AATAAGACCATA-CTAAAAGACATTATGGAATCATG-ATTATATCG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* *
103005447 AGTAAGACCATAGCTGAAAGATGCTATGGCATCACGAATCA-AACG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* * * *** * *
103005492 AATAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* * **
103005538 AATAAGACCATGGCTTAAAGGCACTATGGCATCA
1 AATAAGACCATAGCTGAAAGATACTATGGCATCA
103005572 AGACGAGAAT
Statistics
Matches: 161, Mismatches: 44, Indels: 17
0.73 0.20 0.08
Matches are distributed among these distances:
43 1 0.01
44 33 0.20
45 88 0.55
46 36 0.22
47 2 0.01
48 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (46 bp):
AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
Found at i:103005563 original size:46 final size:45
Alignment explanation
Indices: 103005449--103005613 Score: 152
Period size: 45 Copynumber: 3.6 Consensus size: 45
103005439 TTATATCGAG
* ** * * *** *
103005449 TAAGACCATAGCTGAAAGATGCTATGGCATCACGAATCAAACGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAAGACGAAAATGAA
*
103005494 TAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAAGAC-GAAAATGAA
* * * * *
103005540 TAAGACCATGGCTT-AAAGGCACTATGGCATCAAGACGAGAATAAA
1 TAAGACCATAG-TTGAAAGACACTATGGCAACAAGACGAAAATGAA
* *
103005585 TAAGACCATTGTTGAAAGACACCATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
103005614 CACTCTGATC
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
44 2 0.02
45 61 0.61
46 35 0.35
47 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACAAGACGAAAATGAA
Found at i:103005612 original size:45 final size:46
Alignment explanation
Indices: 103005492--103005613 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
103005482 GAATCAAACG
* *
103005492 AATAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACAAGACGGAAAATA
* * * *
103005538 AATAAGACCATGGCTT-AAAGGCACTATGGCATCAAGAC-GAGAATA
1 AATAAGACCATAG-TTGAAAGACACTATGGCAACAAGACGGAAAATA
* *
103005583 AATAAGACCATTGTTGAAAGACACCATGGCA
1 AATAAGACCATAGTTGAAAGACACTATGGCA
103005614 CACTCTGATC
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
44 2 0.03
45 30 0.46
46 31 0.48
47 2 0.03
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.17
Consensus pattern (46 bp):
AATAAGACCATAGTTGAAAGACACTATGGCAACAAGACGGAAAATA
Found at i:103007429 original size:15 final size:15
Alignment explanation
Indices: 103007409--103007438 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103007399 CCTATAAATA
*
103007409 TCATCCCTCATCCCT
1 TCATCCATCATCCCT
103007424 TCATCCATCATCCCT
1 TCATCCATCATCCCT
103007439 CATAGCTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (15 bp):
TCATCCATCATCCCT
Found at i:103012345 original size:22 final size:21
Alignment explanation
Indices: 103012316--103012374 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 21
103012306 TGCACTAATG
103012316 AACAGAGAGCACTAAAGTGCT
1 AACAGAGAGCACTAAAGTGCT
*
103012337 ATACAGAGAGCAC-AGATGTGCT
1 A-ACAGAGAGCACTA-AAGTGCT
103012359 AATCAGAGAGCACTAA
1 AA-CAGAGAGCACTAA
103012375 CAGACTAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
21 3 0.09
22 29 0.88
23 1 0.03
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.15
Consensus pattern (21 bp):
AACAGAGAGCACTAAAGTGCT
Found at i:103013891 original size:3 final size:3
Alignment explanation
Indices: 103013883--103013954 Score: 80
Period size: 3 Copynumber: 24.3 Consensus size: 3
103013873 TCTTTAATTT
*
103013883 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATCA AT- ATC
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
103013927 ATA AT- ATAA ATA ATA AT- ATA ATA TATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA -ATA A
103013955 ATATCTTTTA
Statistics
Matches: 61, Mismatches: 1, Indels: 14
0.80 0.01 0.18
Matches are distributed among these distances:
2 8 0.13
3 46 0.75
4 7 0.11
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:103014113 original size:28 final size:26
Alignment explanation
Indices: 103014082--103014143 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 26
103014072 ATATAATGTC
103014082 TTATTTATAATTAATATAAATTACAATA
1 TTATTTATAA-TAATATAAATTA-AATA
* *
103014110 TTATAATATAATAATATACATTAAATA
1 TTAT-TTATAATAATATAAATTAAATA
*
103014137 ATATTTA
1 TTATTTA
103014144 ATTACAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.07
27 7 0.24
28 15 0.52
29 5 0.17
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (26 bp):
TTATTTATAATAATATAAATTAAATA
Found at i:103015619 original size:18 final size:17
Alignment explanation
Indices: 103015596--103015633 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
103015586 CTTTTTTTTA
103015596 TTTA-TTTATTTATTTATT
1 TTTATTTTA-TTA-TTATT
103015614 TTTATTTTATTATTATT
1 TTTATTTTATTATTATT
103015631 TTT
1 TTT
103015634 TAATGCTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTATTTTATTATTATT
Found at i:103015626 original size:22 final size:21
Alignment explanation
Indices: 103015590--103015631 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
103015580 GTAACTCTTT
103015590 TTTTTATTTATTTATTTATTTA
1 TTTTTATTTATTTA-TTATTTA
103015612 TTTTTATTT-TATTATTATTT
1 TTTTTATTTAT-TTATTATTT
103015632 TTTAATGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTATTTATTTATTATTTA
Found at i:103015634 original size:18 final size:15
Alignment explanation
Indices: 103015587--103015635 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
103015577 TATGTAACTC
103015587 TTTTT-TTTATTTAT
1 TTTTTATTTATTTAT
103015601 TTATTTATTTATTT-T
1 TT-TTTATTTATTTAT
103015616 TATTTTA-TTA-TTAT
1 T-TTTTATTTATTTAT
103015630 TTTTTA
1 TTTTTA
103015636 ATGCTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
13 7 0.23
14 7 0.23
15 9 0.29
16 8 0.26
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTATTTATTTAT
Found at i:103016638 original size:6 final size:6
Alignment explanation
Indices: 103016629--103016687 Score: 68
Period size: 6 Copynumber: 9.7 Consensus size: 6
103016619 AGAAAATAAA
*
103016629 AAAAAT -AAAAT AGAAAAT AAAAA- AAAAAT AACAAAAT ACAAAT AAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT -A-AAAAT AAAAAT AAAAAT
103016678 AAAAAT AAAA
1 AAAAAT AAAA
103016688 CTGGGTTGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
5 10 0.22
6 23 0.50
7 8 0.17
8 5 0.11
ACGTcount: A:0.81, C:0.03, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:103016683 original size:26 final size:27
Alignment explanation
Indices: 103016621--103016685 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
103016611 AACATGCAAG
* *
103016621 AAAATAAAAAAAATAAAATAGAAAATA
1 AAAATAAAAATAACAAAATAGAAAATA
*
103016648 AAAA-AAAAATAACAAAATA-CAAATA
1 AAAATAAAAATAACAAAATAGAAAATA
103016673 AAAATAAAAATAA
1 AAAATAAAAATAA
103016686 AACTGGGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.26
26 21 0.62
27 4 0.12
ACGTcount: A:0.82, C:0.03, G:0.02, T:0.14
Consensus pattern (27 bp):
AAAATAAAAATAACAAAATAGAAAATA
Found at i:103020865 original size:48 final size:48
Alignment explanation
Indices: 103020633--103020852 Score: 323
Period size: 48 Copynumber: 4.6 Consensus size: 48
103020623 ATGCCTCATA
* **
103020633 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATAATGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
* * *
103020681 TCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATAAAAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
* * * *
103020729 CCGATGCCATGTCCCAAACATAGTCTTACAGTGGCTCACATAACGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
* *
103020777 CCGATGCCATGTCCCAAACGTGGTCTTACACTGGCTCACATAACAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
*
103020825 CTGATGCCATGTCCCAGACATGGTCTTA
1 CCGATGCCATGTCCCAGACATGGTCTTA
103020853 TATGGGATCA
Statistics
Matches: 153, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 153 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
Found at i:103022832 original size:21 final size:21
Alignment explanation
Indices: 103022808--103022847 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
103022798 ATAGATGCCA
103022808 CTGTTCTCTGTTAAAAATCCT
1 CTGTTCTCTGTTAAAAATCCT
* * *
103022829 CTGTTTTCTTTTGAAAATC
1 CTGTTCTCTGTTAAAAATC
103022848 AACAGTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (21 bp):
CTGTTCTCTGTTAAAAATCCT
Found at i:103080860 original size:37 final size:37
Alignment explanation
Indices: 103080810--103080885 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
103080800 TTATTACGAA
* * *
103080810 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
103080847 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
103080884 GT
1 GT
103080886 ATTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:103081085 original size:47 final size:47
Alignment explanation
Indices: 103081007--103081370 Score: 577
Period size: 47 Copynumber: 7.7 Consensus size: 47
103080997 CCCTTCGGGA
* * * * * *
103081007 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
103081054 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103081101 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103081148 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103081195 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103081242 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103081289 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
103081336 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
103081371 AGAATCCTAA
Statistics
Matches: 295, Mismatches: 21, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 294 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103084756 original size:40 final size:39
Alignment explanation
Indices: 103084724--103084944 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 39
103084714 CCAGCATGAT
* * * *
103084724 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTC-GGACTTAGTCCGGATATATCACTAGCACGAA
**
103084764 TGCTCTTCGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGACTTAGTC-CGGATATATCACTAGCACGAA
*
103084803 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGG-ACTTAGTCCGGATATATCACTAGCACGAA
*
103084843 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGG-ACTTAGTCCGGATATATCACTAGCACGAA
* *
103084883 TGCTCTTCGAACTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGACTTAGTCCGGATAT-ATCAC-TAGCACGAA
* *
103084923 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTC-GGACTTAGTCCGGA
103084945 CATCATTCAA
Statistics
Matches: 161, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
38 1 0.01
39 52 0.32
40 101 0.63
41 7 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
TGCTCTTCGGACTTAGTCCGGATATATCACTAGCACGAA
Found at i:103084840 original size:79 final size:80
Alignment explanation
Indices: 103084724--103084906 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 80
103084714 CCAGCATGAT
* * * **
103084724 TGCTCTTCAGG-ACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGG-GTTTAG-CACGGA
1 TGCTCTTC-GGAACTTAGTCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGTC-CGGA
*
103084786 TATATCACTAGCACGAA
64 TACATCACTAGCACGAA
* *
103084803 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
103084868 CATCACTAGCACGAA
66 CATCACTAGCACGAA
103084883 TGCTCTTC-GAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
103084907 TGGTCACTTA
Statistics
Matches: 93, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
78 2 0.02
79 58 0.62
80 32 0.34
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGTCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
CATCACTAGCACGAA
Found at i:103084930 original size:79 final size:80
Alignment explanation
Indices: 103084724--103084944 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 80
103084714 CCAGCATGAT
* * * * * * ** *
103084724 TGCTCTTCAGG-ACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGG-GTTTAGCACGGAT
1 TGCTCTTC-GGAACTTAGTCCGGATACATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGAT
*
103084787 ATATCACTAGCACGAA
65 ACATCACTAGCACGAA
* *
103084803 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATA
103084868 CATCACTAGCACGAA
66 CATCACTAGCACGAA
** *
103084883 TGCTCTTC-GAACTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGTCCGGATA-CATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
103084945 CATCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
78 2 0.02
79 75 0.61
80 40 0.33
81 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:103084937 original size:119 final size:119
Alignment explanation
Indices: 103084724--103084944 Score: 270
Period size: 119 Copynumber: 1.9 Consensus size: 119
103084714 CCAGCATGAT
* ***
103084724 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGTTTAGCACGGATAT
1 TGCTCTTCAGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAACTTAGCACGGATAT
* *
103084789 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 ATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
103084843 TGCTCTTC-GGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTC-CGGAT
1 TGCTCTTCAGG-ACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAACTTAG-CACGGAT
* *
103084906 ATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
64 AT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
103084945 CATCATTCAA
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
118 2 0.02
119 69 0.80
120 9 0.10
121 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
TGCTCTTCAGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAACTTAGCACGGATAT
ATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:103085330 original size:29 final size:27
Alignment explanation
Indices: 103085258--103085330 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 27
103085248 ATAATCAACC
*
103085258 ACGCACACTTAGTGCCATGTACTTTAA
1 ACGCACACTTAGTGCCATGCACTTTAA
*
103085285 ACTCACACTTAGTGCCATGCA-TTTCAA
1 ACGCACACTTAGTGCCATGCACTTT-AA
*
103085312 GCCCGCACACTTAGTGCCA
1 --ACGCACACTTAGTGCCA
103085331 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 3 0.08
27 21 0.54
29 15 0.38
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (27 bp):
ACGCACACTTAGTGCCATGCACTTTAA
Found at i:103085360 original size:43 final size:43
Alignment explanation
Indices: 103085312--103085414 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
103085302 TGCATTTCAA
103085312 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
103085355 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
103085398 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
103085415 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:103087329 original size:37 final size:37
Alignment explanation
Indices: 103087279--103087354 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
103087269 TTATTACGAA
* * *
103087279 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
103087316 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
103087353 GT
1 GT
103087355 ATTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:103087555 original size:47 final size:47
Alignment explanation
Indices: 103087476--103087744 Score: 409
Period size: 47 Copynumber: 5.7 Consensus size: 47
103087466 CCCTTCGGGA
* * * * *
103087476 CTTATCACATTTATACACTTTCACA-TCTATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTC-ATCACATCGGCCATTAGGC
* *
103087523 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103087570 CTTATCACATATATACACTTTCACATT-ATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103087616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103087663 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
103087710 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
103087745 AGAATCCTAA
Statistics
Matches: 207, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
46 47 0.23
47 158 0.76
48 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103087636 original size:93 final size:93
Alignment explanation
Indices: 103087476--103087744 Score: 414
Period size: 93 Copynumber: 2.9 Consensus size: 93
103087466 CCCTTCGGGA
* * * * * * *
103087476 CTTATCACATTTATACACTTTCACATCTATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACAT-TATCACATCGGCCATTAGGCCTTATCACATATATACAC
103087541 TTTCACATTCATCACATCGGCCATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
103087570 CTTATCACATATATACACTTTCACATTATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTATCACATCGGCCATTAGGCCTTATCACATATATACACT
103087635 TTCACATTCATCACATCGGCCATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
* *
103087663 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
103087727 TGTTCACATCCATCACAT
65 T-TTCACATTCATCACAT
103087745 AGAATCCTAA
Statistics
Matches: 163, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
93 89 0.55
94 74 0.45
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:103087733 original size:140 final size:141
Alignment explanation
Indices: 103087476--103087744 Score: 409
Period size: 140 Copynumber: 1.9 Consensus size: 141
103087466 CCCTTCGGGA
* * * * *
103087476 CTTATCACATTTATACACTTTCACATCTATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCTATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
103087541 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT-TATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
103087605 GGCCATTAGGC
131 GGCCATTAGGC
* *
103087616 CTTATCACATATATACACTTTCACAT-TCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATACACTTTCACATCT-ATCACATCGGCCACTAGGCCCTATCACATATATACA
* *
103087680 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-TGTTCACATCCATCACA
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATCCATCACA
103087744 T
129 T
103087745 AGAATCCTAA
Statistics
Matches: 116, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
139 2 0.02
140 107 0.92
141 7 0.06
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCTATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
GGCCATTAGGC
Found at i:103098558 original size:13 final size:14
Alignment explanation
Indices: 103098526--103098555 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
103098516 AAAAATTTAG
103098526 AAATTATTTTCTTA
1 AAATTATTTTCTTA
103098540 AAATTATTTTCTTA
1 AAATTATTTTCTTA
103098554 AA
1 AA
103098556 TTAGTACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (14 bp):
AAATTATTTTCTTA
Found at i:103103847 original size:26 final size:26
Alignment explanation
Indices: 103103811--103103861 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
103103801 TCGGATGATG
*
103103811 TTCCTGTCTATTTCTCTTGAAAATAA
1 TTCCTGTCTATTTCTCTCGAAAATAA
103103837 TTCCTGTCTATTTCTCTCGAAAATA
1 TTCCTGTCTATTTCTCTCGAAAATA
103103862 GACTTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.45
Consensus pattern (26 bp):
TTCCTGTCTATTTCTCTCGAAAATAA
Found at i:103104674 original size:49 final size:50
Alignment explanation
Indices: 103104607--103104735 Score: 140
Period size: 50 Copynumber: 2.6 Consensus size: 50
103104597 TCAAGTCGAT
* *
103104607 GCCATGTCCCAGTCATGGTCTTACACTGACTATCA-AAAT-CG-AGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGTA--CCAAC
* * * * *
103104656 GCCATGTCCTAGACATGGTCTTGCACT-AGCTCTCACATATCCGTACCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATCCGTACCAAC
103104706 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
103104736 ACATCTCAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
48 1 0.02
49 29 0.44
50 32 0.48
51 3 0.05
52 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGTACCAAC
Found at i:103104804 original size:46 final size:44
Alignment explanation
Indices: 103104708--103104828 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 44
103104698 GTACCAATGC
* * *
103104708 CATGTCCCAGACATGGTCTTACACTGACACATCTCAAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACATCTCAAAGCCGATA
* *
103104753 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGC--ACATCTCAAAGCCGATA
* * * *
103104799 CATGTCCGAGCCATGCCTTACATTGGCACA
1 CATGTCCCAGACATGTCTTACACTGGCACA
103104829 CAAATAACCT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
44 15 0.23
45 14 0.22
46 36 0.55
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.25
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCACATCTCAAAGCCGATA
Found at i:103121170 original size:28 final size:28
Alignment explanation
Indices: 103121102--103121283 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
103121092 CATGAGATTG
* * * *
103121102 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
103121131 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103121159 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* * *
103121187 GCACTAAGTGTGCAAGTTTTATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103121215 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103121243 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
103121270 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
103121284 GACTTAATAT
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 24 0.17
28 100 0.70
29 18 0.13
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:103129156 original size:28 final size:28
Alignment explanation
Indices: 103129088--103129269 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
103129078 CATGAGATTG
* * * *
103129088 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
103129117 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103129145 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
103129173 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103129201 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103129229 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
103129256 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
103129270 GACTTAATAT
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 24 0.17
28 102 0.71
29 18 0.12
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:103132842 original size:38 final size:38
Alignment explanation
Indices: 103132799--103132875 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
103132789 CTAATTATGT
103132799 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
1 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
103132837 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
1 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
103132875 T
1 T
103132876 CCACAACCCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (38 bp):
TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
Found at i:103161558 original size:27 final size:27
Alignment explanation
Indices: 103161517--103161570 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
103161507 TGTCATGTGA
* *
103161517 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
103161544 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
103161571 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:103161938 original size:50 final size:49
Alignment explanation
Indices: 103161817--103161999 Score: 172
Period size: 50 Copynumber: 3.7 Consensus size: 49
103161807 TCTATTGTGA
* * *
103161817 GGTCATGTGTGTAGTAGTAAGTGCAGGCTACT--ATGCATACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGATAA-TT
** * * * **
103161867 CAATCACGTGTGTAGTGCTAAGTGCAGGCTAGTACATGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* *
103161917 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
***
103161967 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
103162000 TGCATACCAG
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 30 0.28
50 42 0.39
51 32 0.30
53 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:103162013 original size:49 final size:50
Alignment explanation
Indices: 103161816--103162013 Score: 188
Period size: 49 Copynumber: 4.0 Consensus size: 50
103161806 ATCTATTGTG
* * *
103161816 AGGTCATGTGTGTAGTAGTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA-TT
* * * * **
103161867 CA-ATCACGTGTGTAGTGCTAAGTGCAGGCTAGTA--CATGTATCAGATGGTT
1 -AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCA--TACCAGATAATT
* ** *
103161917 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATT
***
103161967 -GGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
103162014 CCTTGTCTAC
Statistics
Matches: 116, Mismatches: 25, Indels: 13
0.75 0.16 0.08
Matches are distributed among these distances:
49 43 0.37
50 39 0.34
51 33 0.28
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATT
Found at i:103166304 original size:21 final size:21
Alignment explanation
Indices: 103166280--103166339 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
103166270 CCAATTCAAG
103166280 CATTCAATCATTTAAACCAAC
1 CATTCAATCATTTAAACCAAC
* * *
103166301 CATTCCATAATTTACCATCCAAC
1 CATTCAATCATTTA--AACCAAC
*
103166324 TATTCAA-CATTTAAAC
1 CATTCAATCATTTAAAC
103166340 ATATTCAACT
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
20 2 0.07
21 12 0.40
22 5 0.17
23 11 0.37
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (21 bp):
CATTCAATCATTTAAACCAAC
Found at i:103172580 original size:20 final size:19
Alignment explanation
Indices: 103172551--103172617 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 19
103172541 GAACTACTCT
103172551 ATTT-CTTACTTATCATTCC
1 ATTTACTTACTT-TCATTCC
**
103172570 ATTTACTTACTTTTCATTTT
1 ATTTACTTAC-TTTCATTCC
103172590 ATTTACTTACTTTCCATTCC
1 ATTTACTTACTTT-CATTCC
103172610 ATTTACTT
1 ATTTACTT
103172618 GGCATAAGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 7 0.17
20 32 0.78
21 2 0.05
ACGTcount: A:0.21, C:0.22, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTACTTACTTTCATTCC
Found at i:103175091 original size:80 final size:78
Alignment explanation
Indices: 103175007--103175177 Score: 218
Period size: 78 Copynumber: 2.2 Consensus size: 78
103174997 GGACTAAGAT
*
103175007 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTT-AGCCCCGAAGG-CATTGTGCGAGATACT
* *
103175071 AAATCCGGGTTAAGTC
63 AAAACCGGGCTAAGTC
* * * * * *
103175087 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAGCCCCGAAGGCATTGTGCGAGATACTAAA
*
103175152 ACCGGGCTATGTC
66 ACCGGGCTAAGTC
103175165 CCGAAGGCATTTG
1 CCGAAGGCATTTG
103175178 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 38 0.48
79 10 0.13
80 28 0.35
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:103175166 original size:39 final size:38
Alignment explanation
Indices: 103175007--103175175 Score: 196
Period size: 40 Copynumber: 4.3 Consensus size: 38
103174997 GGACTAAGAT
* *
103175007 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTT-AGTC
* *
103175047 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTT-AGTC
*
103175087 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAGTC
* * *
103175126 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTA-GTC
103175165 CCGAAGGCATT
1 CCGAAGGCATT
103175176 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
38 20 0.17
39 32 0.28
40 60 0.52
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAGTC
Found at i:103175195 original size:78 final size:80
Alignment explanation
Indices: 103175034--103175210 Score: 191
Period size: 78 Copynumber: 2.2 Consensus size: 80
103175024 AGATACAAAT
* * * *
103175034 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
103175099 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
103175114 TCCGGGTT-AGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
103175177 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
103175192 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
103175211 TACGTGATTT
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 5 0.06
78 58 0.72
79 10 0.12
80 8 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:103182965 original size:40 final size:39
Alignment explanation
Indices: 103182928--103183105 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 39
103182918 ATATCCGGAC
103182928 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
103182968 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
103183008 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
103183048 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
103183087 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
103183106 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.27
40 85 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:103183018 original size:80 final size:79
Alignment explanation
Indices: 103182934--103183105 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 79
103182924 GGACTAAGAT
*
103182934 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
103182998 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * *
103183014 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
103183079 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
103183093 CCGAAGGCATTTG
1 CCGAAGGCATTTG
103183106 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 38 0.47
80 39 0.49
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:103183123 original size:79 final size:80
Alignment explanation
Indices: 103182961--103183138 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
103182951 AGATACAAAT
* * * *
103182961 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
103183026 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
103183041 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
103183105 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
103183120 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
103183139 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:103191338 original size:51 final size:50
Alignment explanation
Indices: 103191263--103191450 Score: 224
Period size: 49 Copynumber: 3.8 Consensus size: 50
103191253 CTAGGTCGCA
* *
103191263 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAA-TT-GGTCACG
* * *
103191314 TGTATAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAATTAGGTTACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAATT-GGTCACG
* * * *
103191364 TGTGTAGTACTAAGTGCA-GCTACTACGTGTAC-CGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAATTGGTCACG
*
103191412 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATA
103191451 GTTTGGCTAC
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
48 22 0.18
49 38 0.32
50 26 0.22
51 34 0.28
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAATTGGTCACG
Found at i:103191445 original size:49 final size:50
Alignment explanation
Indices: 103191254--103191450 Score: 229
Period size: 51 Copynumber: 4.0 Consensus size: 50
103191244 TATATGTAGC
* *
103191254 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAGATAA-T
* * * * * *
103191305 TCGATCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* * * *
103191355 TAGGTTACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* *
103191404 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
103191451 GTTTGGCTAC
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
48 22 0.18
49 38 0.31
50 25 0.20
51 39 0.31
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
Found at i:103191449 original size:98 final size:101
Alignment explanation
Indices: 103191263--103191450 Score: 258
Period size: 98 Copynumber: 1.9 Consensus size: 101
103191253 CTAGGTCGCA
* *
103191263 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTCGATCACGTGTATAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTCGATCACATGTATAGTACTAAG
* *
103191328 TGCAGGCTACTACGTGTATCAGATAATTAGGTTACG
66 TGCAGGCTACTACGCGTACCAGATAATTAGGTTACG
* * * *
103191364 TGTGTAGTACTAAGTGCA-GCTACTACGTGTAC-CGGATAA-TT-GGTCGCATGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-GATAACTTCGATCACATGTATAGTACTAA
*
103191425 GTGCAGGCTACTATGCGTACCAGATA
65 GTGCAGGCTACTACGCGTACCAGATA
103191451 GTTTGGCTAC
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
98 39 0.51
99 3 0.04
100 17 0.22
101 18 0.23
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTCGATCACATGTATAGTACTAAG
TGCAGGCTACTACGCGTACCAGATAATTAGGTTACG
Found at i:103193348 original size:13 final size:13
Alignment explanation
Indices: 103193330--103193354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103193320 TCGGTAGGGG
103193330 CACGCCCGTGTGA
1 CACGCCCGTGTGA
103193343 CACGCCCGTGTG
1 CACGCCCGTGTG
103193355 CGATTACTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:103217312 original size:28 final size:30
Alignment explanation
Indices: 103217280--103217336 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
103217270 AAACATTTCA
*
103217280 CATA-TTCCTCATTCATTTG-CACATATAG
1 CATATTTCCTCATACATTTGTCACATATAG
* *
103217308 CATATTTTCTCATACTTTTGTCACATATA
1 CATATTTCCTCATACATTTGTCACATATA
103217337 ATCACTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 12 0.50
30 8 0.33
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (30 bp):
CATATTTCCTCATACATTTGTCACATATAG
Found at i:103217573 original size:43 final size:42
Alignment explanation
Indices: 103217515--103217664 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 42
103217505 CAATGCCAAC
* *
103217515 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATG-CCACT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATA-CGATGTCCA-T
* *
103217558 GTCCTAGACAG-GGTCTTACACGAAATCAAATACGATGTCGAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATACGATGTCCAT
* *
103217600 GTCCCAGACGTGGTCTTACACATAAATCATAAGT-CGATG-CCAAC
1 GTCCCAGACGTGGTCTTACAC-GAAATCA-AA-TACGATGTCC-AT
* *
103217644 ATCGCAGACGTGGTCTTACAC
1 GTCCCAGACGTGGTCTTACAC
103217665 AAAAACACAT
Statistics
Matches: 90, Mismatches: 10, Indels: 13
0.80 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 24 0.27
43 36 0.40
44 28 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATACGATGTCCAT
Found at i:103226371 original size:27 final size:26
Alignment explanation
Indices: 103226323--103226382 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
103226313 GCGAGGCTAC
*
103226323 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
103226350 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
103226376 CAGATAT
1 CAGATAT
103226383 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:103227089 original size:27 final size:27
Alignment explanation
Indices: 103226649--103227082 Score: 457
Period size: 27 Copynumber: 16.0 Consensus size: 27
103226639 GGGGTAAAAT
* * * *
103226649 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
103226676 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
103226703 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
103226730 GGTATTTCTACCTTAC---GGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
103226754 GGT-ATTCTACCCTA-A-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
103226778 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 -G-------GTAATTCTACCCTACAGGGGTATTTC
* * * *
103226813 GATATTTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
103226840 AGTATTTTTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
103226867 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
103226894 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
103226921 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
103226948 GATAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
103226975 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
103227002 GATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
103227029 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
103227056 GGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
103227083 AATAATTTTC
Statistics
Matches: 355, Mismatches: 39, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
23 9 0.03
24 19 0.05
25 1 0.00
27 302 0.85
32 2 0.01
33 11 0.03
34 2 0.01
35 9 0.03
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:103227105 original size:27 final size:27
Alignment explanation
Indices: 103227075--103227197 Score: 99
Period size: 27 Copynumber: 4.6 Consensus size: 27
103227065 ACTCTACAGG
*
103227075 GGTATTTCAATAATTTT-CTAAATCGAA
1 GGTATTTCAGTAATTTTAC-AAATCGAA
*** * *
103227102 GGTAAAACAGTAATTCTATAAATC-AA
1 GGTATTTCAGTAATTTTACAAATCGAA
* * *
103227128 GGGTACTTT-GGTAATTTTACAAGTCGAG
1 -GGTA-TTTCAGTAATTTTACAAATCGAA
* *
103227156 GGTATTTCAATAATTTTACAAGTCGAA
1 GGTATTTCAGTAATTTTACAAATCGAA
103227183 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
103227198 CATAAATCAG
Statistics
Matches: 73, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
26 5 0.07
27 67 0.92
28 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAA
Found at i:103227129 original size:81 final size:79
Alignment explanation
Indices: 103227044--103227256 Score: 211
Period size: 81 Copynumber: 2.7 Consensus size: 79
103227034 TTCTACCCTA
*
103227044 CAAGGGTATTTCGGTAATTCTAC-TCTAC-AGGGGTATTTCAATAATTTT-CTAAATCGAAGGTA
1 CAAGGGTATTT-GGTAATTCTACAACT-CGA-GGGTATTTCAATAATTTTAC-AAATCGAAGGTA
103227106 AAACAGTAATTCTATAAAT
62 AAACAGTAATTC-ATAAAT
* * * ***
103227125 CAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAGTCGAAGGTATTT
1 CAAGGGTA-TTTGGTAATTCTACAACTCGAGGGTATTTCAATAATTTTACAAATCGAAGGTAAAA
103227190 CAGTAATTCATAAAT
65 CAGTAATTCATAAAT
* * * **
103227205 CAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGAT-ATTTTACAAA
1 CAAGGGTA-TTTGGTAATTCTAC-AACTCGAGGGTATTTCAATAATTTTACAAA
103227257 CCAGGGGTTT
Statistics
Matches: 113, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
79 9 0.08
80 37 0.33
81 61 0.54
82 6 0.05
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (79 bp):
CAAGGGTATTTGGTAATTCTACAACTCGAGGGTATTTCAATAATTTTACAAATCGAAGGTAAAAC
AGTAATTCATAAAT
Found at i:103227241 original size:27 final size:27
Alignment explanation
Indices: 103227206--103227447 Score: 290
Period size: 27 Copynumber: 9.0 Consensus size: 27
103227196 TTCATAAATC
103227206 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
103227233 AGGGGTATTTTGAT-ATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
103227259 AGGGGTTTTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
103227286 AGAGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
103227313 A-GGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
** * * *
103227339 AGATGTATTTTGGTGATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
103227366 AAGGGTATTCTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
**
103227393 AGGGGTATTTTGGTAATTTTGTAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
103227420 AAGGGTATTTTGGTAATTTCATAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
103227447 A
1 A
103227448 AAGTATTCTA
Statistics
Matches: 182, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 47 0.26
27 135 0.74
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:103227390 original size:54 final size:54
Alignment explanation
Indices: 103227199--103227447 Score: 313
Period size: 53 Copynumber: 4.6 Consensus size: 54
103227189 TCAGTAATTC
* * *
103227199 ATAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGAT-ATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * *
103227252 ACAAACCAGGGGTTTTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * * * *
103227306 ACAAACC-AGGGTATTTTGGTAATTTTACAAACCAGATGTATTTTGGTGATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * * *
103227359 ATAAACCAAGGGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * * *
103227413 GTAAACTAAGGGTATTTTGGTAATTTCATAAACTA
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTA
103227448 AAGTATTCTA
Statistics
Matches: 171, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
53 90 0.53
54 81 0.47
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
Found at i:103229914 original size:28 final size:28
Alignment explanation
Indices: 103229882--103229946 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
103229872 ATTTACTAGA
* *
103229882 ATACCCCTATGTATGCCAAATTACCGTT
1 ATACCCCTATGTATGCAAAATGACCGTT
* *
103229910 ATACCCTTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCGTT
103229938 ATACCCCTA
1 ATACCCCTA
103229947 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCGTT
Found at i:103230082 original size:23 final size:23
Alignment explanation
Indices: 103230052--103230110 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 23
103230042 AGGAAGCGTC
103230052 CTGGTGGCCACAAATTATCTGTT
1 CTGGTGGCCACAAATTATCTGTT
103230075 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGT-G----GCCACAAATTATCTGTT
103230103 CTGGTGGC
1 CTGGTGGC
103230111 ACTGCCACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
23 7 0.23
24 1 0.03
27 1 0.03
28 22 0.71
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.32
Consensus pattern (23 bp):
CTGGTGGCCACAAATTATCTGTT
Found at i:103230148 original size:29 final size:28
Alignment explanation
Indices: 103230058--103230137 Score: 133
Period size: 28 Copynumber: 2.8 Consensus size: 28
103230048 CGTCCTGGTG
*
103230058 GCCACAAATTATCTGTTCTGGTGGCCCT
1 GCCACAAATTATCTGTTCTGGTGGCACT
103230086 GCCACAAATTATCTGTTCTGGTGGCACT
1 GCCACAAATTATCTGTTCTGGTGGCACT
*
103230114 GCCACAAAATATCTGTATCTGGTG
1 GCCACAAATTATCTGT-TCTGGTG
103230138 ACTCTGTCAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 42 0.86
29 7 0.14
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (28 bp):
GCCACAAATTATCTGTTCTGGTGGCACT
Found at i:103231248 original size:11 final size:10
Alignment explanation
Indices: 103231220--103231253 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
103231210 AGCCTGTAAG
103231220 TATTCTGAAT
1 TATTCTGAAT
*
103231230 TTTTCTGAAT
1 TATTCTGAAT
103231240 ATATTCTGAAT
1 -TATTCTGAAT
103231251 TAT
1 TAT
103231254 CTGTCTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:103237788 original size:28 final size:28
Alignment explanation
Indices: 103237726--103237790 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
103237716 ACTTACTAGA
* *
103237726 ATACCCATATGTATGAAAAATTACCATT
1 ATACCCCTATGTATGAAAAATGACCATT
* *
103237754 ATACCCCTATGTGTGCAAAATGACC-TCT
1 ATACCCCTATGTATGAAAAATGACCAT-T
103237782 ATACCCCTA
1 ATACCCCTA
103237791 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATGACCATT
Done.