Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 309 of 349
Found at i:103237927 original size:28 final size:26
Alignment explanation
Indices: 103237896--103237985 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 26
103237886 AGGAAGTGTC
*
103237896 CTGGTGGTTATGCCACAAACTATCTGTT
1 CTGGTGG-CATGCCACAAA-TATCTGTT
* **
103237924 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
103237951 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCA-TGCCAC-AAATATCTGT-T
103237980 CTGGTG
1 CTGGTG
103237986 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.02
27 21 0.41
28 22 0.43
29 7 0.14
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:103237954 original size:27 final size:28
Alignment explanation
Indices: 103237906--103237985 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
103237896 CTGGTGGTTA
* *
103237906 TGCCACAAACTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
**
103237934 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
103237961 TGCCACAAAATATCTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
103237986 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.52
28 14 0.32
29 7 0.16
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:103237996 original size:29 final size:28
Alignment explanation
Indices: 103237906--103237996 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
103237896 CTGGTGGTTA
* * *
103237906 TGCCACAAACTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
103237934 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
103237961 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
103237990 TGTCACA
1 TGCCACA
103237997 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:103238004 original size:55 final size:56
Alignment explanation
Indices: 103237906--103238010 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
103237896 CTGGTGGTTA
* * *
103237906 TGCCACAAACTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * *
103237961 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
103238011 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.52
56 20 0.48
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:103239557 original size:24 final size:24
Alignment explanation
Indices: 103239530--103239581 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
103239520 TGAATGAAAG
*
103239530 AAAAGGGAATTTTTGGGGAAAATT
1 AAAAGGGAATTTTTGGGAAAAATT
103239554 AAAAGGGAATTTTTGGGAAAAATT
1 AAAAGGGAATTTTTGGGAAAAATT
103239578 AAAA
1 AAAA
103239582 TTAAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.25, T:0.27
Consensus pattern (24 bp):
AAAAGGGAATTTTTGGGAAAAATT
Found at i:103241274 original size:24 final size:24
Alignment explanation
Indices: 103241247--103241310 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
103241237 TATCTATGAC
103241247 GCCTTTGTAGCGTATTTTGTAAGT
1 GCCTTTGTAGCGTATTTTGTAAGT
* * *
103241271 GCCTTTTTAGCATATTTTGTACGT
1 GCCTTTGTAGCGTATTTTGTAAGT
*
103241295 GCCTTTGTGGCGTATT
1 GCCTTTGTAGCGTATT
103241311 CAAGATTAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.47
Consensus pattern (24 bp):
GCCTTTGTAGCGTATTTTGTAAGT
Found at i:103245355 original size:93 final size:93
Alignment explanation
Indices: 103245196--103245367 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
103245186 GCCCATAAGT
* *
103245196 GAACTCGGACTCAAATCAATGAGCTCGAGCGTTCACATCCATAAGCGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGAGCATTCACATCCATAAGCGAACTCGGACTCAACTCAA
*
103245261 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGAATGCCTAGTTATATCTCTC
* * * *
103245289 GAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCGAG-CATTCACATCCATAAGCGAACTCGGACTCAACTCA
*
103245353 ACGAGTTCGAATGCC
65 ACGAGCTCGAATGCC
103245368 CAAATATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGAGCATTCACATCCATAAGCGAACTCGGACTCAACTCAA
CGAGCTCGAATGCCTAGTTATATCTCTC
Found at i:103245361 original size:46 final size:45
Alignment explanation
Indices: 103245188--103245357 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
103245178 TGTAACCCGC
* * *
103245188 CCATAAGTGAACTCGGACTCAAATCAATGAGCTC-GAGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CATTC-CAT
* *
103245234 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCC-A-T
* ** *
103245279 -TATATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTC-CAT
103245327 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
103245358 TTCGAATGCC
Statistics
Matches: 100, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 1 0.01
46 54 0.54
47 29 0.29
48 1 0.01
49 7 0.07
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCCAT
Found at i:103245382 original size:46 final size:45
Alignment explanation
Indices: 103245242--103245382 Score: 112
Period size: 46 Copynumber: 3.0 Consensus size: 45
103245232 ATCCATAAGC
* * * *
103245242 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCT--C
1 GAACTCGGACTCAACTCAACGAGTTCGAATGCCCA---ATATC-CTAGT
* *
103245289 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC---ATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GA-ATGCCCAATATCC-T-AGT
103245335 GAACTCGGACTCAACTCAACGAGTTCGAATGCCCAAATATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGAATGCCC-AATATCCTAGT
103245381 GA
1 GA
103245383 CATGTCACTT
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
45 2 0.03
46 31 0.41
47 26 0.34
48 5 0.07
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGAATGCCCAATATCCTAGT
Found at i:103247291 original size:30 final size:30
Alignment explanation
Indices: 103247257--103247410 Score: 195
Period size: 30 Copynumber: 5.1 Consensus size: 30
103247247 ATGGGGTGTT
*
103247257 TCCAGCTCGTGTGGCTCACACGGGAGTATG
1 TCCAGCCCGTGTGGCTCACACGGGAGTATG
*
103247287 TCCAGCCCGTGTGGCTCACACGGGCGTATG
1 TCCAGCCCGTGTGGCTCACACGGGAGTATG
* *
103247317 TCCAACCCGTGTGGCTCACAC-GGACGCATG
1 TCCAGCCCGTGTGGCTCACACGGGA-GTATG
* * * *
103247347 TCCAGCTCGTGTGGCTTACATGGGTGTATG
1 TCCAGCCCGTGTGGCTCACACGGGAGTATG
*
103247377 TCTAGCCCGTGTGGCTCACACGGGCA-TATG
1 TCCAGCCCGTGTGGCTCACACGGG-AGTATG
103247407 TCCA
1 TCCA
103247411 ACCCATGTTG
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
29 2 0.02
30 100 0.96
31 2 0.02
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.23
Consensus pattern (30 bp):
TCCAGCCCGTGTGGCTCACACGGGAGTATG
Found at i:103249138 original size:13 final size:13
Alignment explanation
Indices: 103249120--103249146 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
103249110 TAAGTAATCA
103249120 CACACGGGCGTGT
1 CACACGGGCGTGT
103249133 CACACGGGCGTGT
1 CACACGGGCGTGT
103249146 C
1 C
103249147 CCTGCCGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:103252265 original size:7 final size:8
Alignment explanation
Indices: 103252247--103252273 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
103252237 ACAAAAGTCG
103252247 AAAAGCCA
1 AAAAGCCA
103252255 AAAAGCCA
1 AAAAGCCA
103252263 AAAAGCCA
1 AAAAGCCA
103252271 AAA
1 AAA
103252274 CCTCAGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.22, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAGCCA
Found at i:103253142 original size:28 final size:27
Alignment explanation
Indices: 103253086--103253151 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
103253076 GCATCTGATA
* **
103253086 CTGATTCTGTAATGGGCTTAGGCTTAC
1 CTGATTCTGTAATGGGCTAAGGCCCAC
*
103253113 CTGATTCTGTTATTGGGCTAAGGCCCAC
1 CTGATTCTG-TAATGGGCTAAGGCCCAC
* *
103253141 CTAATACTGTA
1 CTGATTCTGTA
103253152 TCTATCATGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 11 0.34
28 21 0.66
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGATTCTGTAATGGGCTAAGGCCCAC
Found at i:103254059 original size:18 final size:17
Alignment explanation
Indices: 103254038--103254086 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 17
103254028 AGATCAGCAA
*
103254038 AATAAAAATAAGTAATAT
1 AATAAAAATAAATAA-AT
103254056 AATAAAAAATAAATAAAT
1 AAT-AAAAATAAATAAAT
103254074 AATATAAAATAAA
1 AATA-AAAATAAA
103254087 AAAAAAAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 16 0.57
19 11 0.39
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (17 bp):
AATAAAAATAAATAAAT
Found at i:103254068 original size:25 final size:23
Alignment explanation
Indices: 103254036--103254094 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 23
103254026 ATAGATCAGC
*
103254036 AAAATAAAAATAAGTAATATAATAA
1 AAAATAAAAATAA-T-ATAAAATAA
103254061 AAAATAAATAAATAATATAAAATAA
1 AAAAT-AA-AAATAATATAAAATAA
103254086 AAAA-AAAAA
1 AAAATAAAAA
103254095 GAGTAAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 3 0.10
23 2 0.06
25 17 0.55
26 3 0.10
27 6 0.19
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (23 bp):
AAAATAAAAATAATATAAAATAA
Found at i:103254069 original size:23 final size:24
Alignment explanation
Indices: 103254043--103254089 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
103254033 AGCAAAATAA
*
103254043 AAATAAGTAATAT-AATAAAAAAT
1 AAATAAATAATATAAATAAAAAAT
103254066 AAATAAATAATATAAAATAAAAAA
1 AAATAAATAATAT-AAATAAAAAA
103254090 AAAAAGAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
25 9 0.43
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (24 bp):
AAATAAATAATATAAATAAAAAAT
Found at i:103259421 original size:13 final size:14
Alignment explanation
Indices: 103259403--103259440 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
103259393 AACTGCAATC
103259403 CCTTGG-GTACGAT
1 CCTTGGAGTACGAT
103259416 CCTTGGAGTACGAT
1 CCTTGGAGTACGAT
103259430 CCTTGGAGTAC
1 CCTTGGAGTAC
103259441 TTCCCTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (14 bp):
CCTTGGAGTACGAT
Found at i:103260922 original size:93 final size:93
Alignment explanation
Indices: 103260809--103260980 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
103260799 CGCCCATAAG
*
103260809 CGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
103260873 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
103260902 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
103260967 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
103260981 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:103260975 original size:46 final size:46
Alignment explanation
Indices: 103260802--103260977 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
103260792 TGTAACCCGC
* * *
103260802 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
103260848 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
103260898 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
103260941 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
103260978 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:103265795 original size:19 final size:20
Alignment explanation
Indices: 103265771--103265808 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
103265761 GGTACCACCA
103265771 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
103265790 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
103265809 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:103266104 original size:46 final size:46
Alignment explanation
Indices: 103266037--103266204 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
103266027 CGCCCCTAAG
*
103266037 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAA
* *
103266083 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAA
* * * * *
103266130 CGAACTCGGACTCAACTCAAGGAGTTTGGGCATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAA
103266176 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
103266205 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 54 0.54
47 27 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAA
Found at i:103266148 original size:93 final size:93
Alignment explanation
Indices: 103266038--103266208 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
103266028 GCCCCTAAGT
*
103266038 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
103266103 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
103266131 GAACTCGGACTCAACTCAAGGAGTTTGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
103266196 CGAGTTCGGATGC
66 CGAGTTCGGATGC
103266209 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:103266662 original size:30 final size:30
Alignment explanation
Indices: 103266628--103266687 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
103266618 ATTTAATACG
103266628 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
103266658 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
103266688 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:103274512 original size:48 final size:48
Alignment explanation
Indices: 103274451--103274776 Score: 427
Period size: 48 Copynumber: 6.8 Consensus size: 48
103274441 ATGGCAGTAC
* * *
103274451 ATGTGATCCCATGTAAGACCATGTTTGGGACATGACATTGGCATTGAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* * * * *
103274499 ATGTGATCCCATGTAAGACCATATCTAGGATATGACATTGGCAACGAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* *
103274547 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* * * *
103274595 ATGTGATCCCATGTAATACCATATCTGGGATATGGCATTAGCATCGAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* *
103274643 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* * *
103274691 ATGTGATCCCATGTAATACCATATCTGGGATATGGCATTGGCATCGAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* **** *
103274739 ATGTAATTTTGTGTAAGACCATGTTTGGGACATGGCAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
103274777 CGATATAAGA
Statistics
Matches: 239, Mismatches: 39, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 239 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (48 bp):
ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
Found at i:103274616 original size:96 final size:96
Alignment explanation
Indices: 103274451--103274776 Score: 517
Period size: 96 Copynumber: 3.4 Consensus size: 96
103274441 ATGGCAGTAC
* * * *
103274451 ATGTGATCCCATGTAAGACCATGTTTGGGACATGACATTGGCATTGATATGTGATCCCATGTAAG
1 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAT
* * *
103274516 ACCATATCTAGGATATGACATTGGCAACGAT
66 ACCATATCTGGGATATGGCATTGGCATCGAT
103274547 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAT
1 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAT
*
103274612 ACCATATCTGGGATATGGCATTAGCATCGAT
66 ACCATATCTGGGATATGGCATTGGCATCGAT
103274643 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAT
1 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAT
103274708 ACCATATCTGGGATATGGCATTGGCATCGAT
66 ACCATATCTGGGATATGGCATTGGCATCGAT
* **** * *
103274739 ATGTAATTTTGTGTAAGACCATGTTTGGGACATGGCAT
1 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCAT
103274777 CGATATAAGA
Statistics
Matches: 214, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 214 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (96 bp):
ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAT
ACCATATCTGGGATATGGCATTGGCATCGAT
Found at i:103274877 original size:36 final size:37
Alignment explanation
Indices: 103274793--103274893 Score: 123
Period size: 37 Copynumber: 2.8 Consensus size: 37
103274783 AAGACTTCCT
* *
103274793 GTAAGACCATAGTTGGGCTATAGCATCATGACGACAT
1 GTAAGACCATAGTTGGGCTATGGCATCATGACGACAA
* ** * *
103274830 GTAAGACCATAGCTGGGCTATGGCATTGTGA-TATAA
1 GTAAGACCATAGTTGGGCTATGGCATCATGACGACAA
*
103274866 GTAAGACCATAGTTGGACTATGGCATCA
1 GTAAGACCATAGTTGGGCTATGGCATCA
103274894 AGTAAACGAT
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
36 26 0.49
37 27 0.51
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (37 bp):
GTAAGACCATAGTTGGGCTATGGCATCATGACGACAA
Found at i:103276928 original size:25 final size:27
Alignment explanation
Indices: 103276898--103276957 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
103276888 AATAAAAGGA
103276898 AAAATACT-ATAAGGAAT-AATAT-AAT
1 AAAATA-TGATAAGGAATAAATATAAAT
*
103276923 AAAATATGATATGGAATAAAATATAAAT
1 AAAATATGATAAGGAAT-AAATATAAAT
103276951 AAAATAT
1 AAAATAT
103276958 AATGAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 1 0.03
25 14 0.47
27 5 0.17
28 10 0.33
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATATGATAAGGAATAAATATAAAT
Found at i:103277075 original size:42 final size:42
Alignment explanation
Indices: 103277029--103277109 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
103277019 CAATTAATGA
*
103277029 ATAATAATACATAATTTATAAAAAAAATAAAAAATAATATAT
1 ATAATAAAACATAATTTATAAAAAAAATAAAAAATAATATAT
* ** * *
103277071 ATAATAAAATATAATTTATAAGTAAAATATAGAATAATA
1 ATAATAAAACATAATTTATAAAAAAAATAAAAAATAATA
103277110 AAAATAACAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (42 bp):
ATAATAAAACATAATTTATAAAAAAAATAAAAAATAATATAT
Found at i:103278836 original size:44 final size:43
Alignment explanation
Indices: 103278746--103279184 Score: 138
Period size: 44 Copynumber: 10.2 Consensus size: 43
103278736 CCCTGACAAT
* * * * *
103278746 ATGCCAAATCTGCT-TCTTGGATTTACTCCTTGTCGAATACAAAG
1 ATGCCAAATCTACTATCTTCGATTTGCTCC-TGAC-CATACAAAG
* * *
103278790 ATGTCAAGTCTACTATC-TCTGATTTGCTCTCTGACCATACAGAG
1 ATGCCAAATCTACTATCTTC-GATTTGCTC-CTGACCATACAAAG
* * * *
103278834 ATGCCAAATCTGCTATCTTCGATCTGCTCC---CTA-AC-AAT
1 ATGCCAAATCTACTATCTTCGATTTGCTCCTGACCATACAAAG
* * * * * *
103278872 ATGCCAAATCT-GTTTCTTGGATTTACTCCTTGTCGAATACAAAG
1 ATGCCAAATCTACTATCTTCGATTTGCTCC-TGAC-CATACAAAG
* *
103278916 ATGTCAAGTCTACTATC-TCTGATTTGCTCTCTGACCATA-AAGAG
1 ATGCCAAATCTACTATCTTC-GATTTGCTC-CTGACCATACAA-AG
* ** * * * **
103278960 ATGCCAAATCTGCCGTCTTCGATCTGTTCCCTGACAATACAGGG
1 ATGCCAAATCTACTATCTTCGATTTGCT-CCTGACCATACAAAG
* * * * * *
103279004 ATGCCAAATCTGCT-TCTTGGATTTGCCCCTCGTCAAATACGAAG
1 ATGCCAAATCTACTATCTTCGATTTGCTCCT-GAC-CATACAAAG
* * * * * **
103279048 ATGCCAAA--T-C-ATCTTGGATCTGCTCCCCGTCGAATATGAAG
1 ATGCCAAATCTACTATCTTCGATTTGCT-CCTGAC-CATACAAAG
* * * * *
103279089 ATGCCAAATAT-C-ATCTTCGATCTGCTCTCTAACAATACAGAG
1 ATGCCAAATCTACTATCTTCGATTTGCTC-CTGACCATACAAAG
* * * * ** *
103279131 ATGCCAAATCTGCTATCTTTGATCTACTCTCTGACGGTACAGAG
1 ATGCCAAATCTACTATCTTCGATTTGCTC-CTGACCATACAAAG
103279175 ATGCCAAATC
1 ATGCCAAATC
103279185 ATCTTGGATC
Statistics
Matches: 301, Mismatches: 67, Indels: 54
0.71 0.16 0.13
Matches are distributed among these distances:
37 13 0.04
38 12 0.04
39 2 0.01
40 2 0.01
41 32 0.11
42 24 0.08
43 34 0.11
44 147 0.49
45 33 0.11
46 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (43 bp):
ATGCCAAATCTACTATCTTCGATTTGCTCCTGACCATACAAAG
Found at i:103278841 original size:126 final size:126
Alignment explanation
Indices: 103278700--103279050 Score: 531
Period size: 126 Copynumber: 2.7 Consensus size: 126
103278690 CTTTCTGATA
**
103278700 ATACAGAGACACCAAATCTGCTGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTGCTTCTTG
1 ATACAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTGCTTCTTG
103278765 GATTTACTCCTTGTCGAATACAAAGATGTCAAGTCTACTATCTCTGATTTGCTCTCTGACC
66 GATTTACTCCTTGTCGAATACAAAGATGTCAAGTCTACTATCTCTGATTTGCTCTCTGACC
* * *
103278826 ATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCCCTAACAATATGCCAAATCTGTTTCTTG
1 ATACAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTGCTTCTTG
103278891 GATTTACTCCTTGTCGAATACAAAGATGTCAAGTCTACTATCTCTGATTTGCTCTCTGACC
66 GATTTACTCCTTGTCGAATACAAAGATGTCAAGTCTACTATCTCTGATTTGCTCTCTGACC
* * *
103278952 ATAAAGAGATGCCAAATCTGCCGTCTTCGATCTGTTCCCTGACAATACAGGGATGCCAAATCTGC
1 ATACAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCCCTGACAAT------ATGCCAAATCTGC
* * * * *
103279017 TTCTTGGATTTGCCCCTCGTCAAATACGAAGATG
60 TTCTTGGATTTACTCCTTGTCGAATACAAAGATG
103279051 CCAAATCATC
Statistics
Matches: 203, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
126 162 0.80
132 41 0.20
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (126 bp):
ATACAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTGCTTCTTG
GATTTACTCCTTGTCGAATACAAAGATGTCAAGTCTACTATCTCTGATTTGCTCTCTGACC
Found at i:103279111 original size:43 final size:44
Alignment explanation
Indices: 103279003--103279115 Score: 135
Period size: 41 Copynumber: 2.6 Consensus size: 44
103278993 ACAATACAGG
* * *
103279003 GATGCCAAATCTGCTTCTTGGATTTGC-CCCTCGTCAAATACGAA
1 GATGCCAAATAT-CATCTTGGATCTGCTCCCTCGTCAAATACGAA
* *
103279047 GATGCC-AA-ATCATCTTGGATCTGCTCCC-CGTCGAATATGAA
1 GATGCCAAATATCATCTTGGATCTGCTCCCTCGTCAAATACGAA
*
103279088 GATGCCAAATATCATCTTCGATCTGCTC
1 GATGCCAAATATCATCTTGGATCTGCTC
103279116 TCTAACAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
41 29 0.48
42 6 0.10
43 19 0.32
44 6 0.10
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (44 bp):
GATGCCAAATATCATCTTGGATCTGCTCCCTCGTCAAATACGAA
Found at i:103279586 original size:22 final size:22
Alignment explanation
Indices: 103279533--103279586 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
103279523 CATTCCTTCG
* *
103279533 TCGAAGTTTATCCTTATTTCTC
1 TCGAAGTATCTCCTTATTTCTC
103279555 TCGAAGTATCTCCTTATTTCTC
1 TCGAAGTATCTCCTTATTTCTC
103279577 TCGAAGTATC
1 TCGAAGTATC
103279587 ATTCCTACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.44
Consensus pattern (22 bp):
TCGAAGTATCTCCTTATTTCTC
Found at i:103283794 original size:30 final size:30
Alignment explanation
Indices: 103283758--103283818 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
103283748 TCCTTAACTC
103283758 AAACTTTGGAA-ATATTACAATTTTGCCCCT
1 AAACTTTGGAATAT-TTACAATTTTGCCCCT
* * *
103283788 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAATATTTACAATTTTGCCCCT
103283818 A
1 A
103283819 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAATATTTACAATTTTGCCCCT
Found at i:103289479 original size:46 final size:45
Alignment explanation
Indices: 103289413--103289503 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 45
103289403 CTTAATCGCT
103289413 TTGGCAACGGTTTTCAGTATTAGGGGTATTGTCGAACTTCACTAC
1 TTGGCAACGGTTTTCAGTATTAGGGGTATTGTCGAACTTCACTAC
103289458 TTGGCAACGGATTTTCAGTATTAGGGGTATTGTCGAACTTCACTAC
1 TTGGCAACGG-TTTTCAGTATTAGGGGTATTGTCGAACTTCACTAC
103289504 CCCCATCTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 10 0.22
46 35 0.78
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (45 bp):
TTGGCAACGGTTTTCAGTATTAGGGGTATTGTCGAACTTCACTAC
Found at i:103295065 original size:12 final size:13
Alignment explanation
Indices: 103295049--103295087 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
103295039 AAGTAATGCA
103295049 AGGTATAATATAT
1 AGGTATAATATAT
*
103295062 -GGTAAAATATAT
1 AGGTATAATATAT
103295074 AGTGTATAATATAT
1 AG-GTATAATATAT
103295088 TTTGTAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 11 0.50
13 1 0.05
14 10 0.45
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:103295222 original size:12 final size:12
Alignment explanation
Indices: 103295187--103295234 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
103295177 ATACTATAAG
*
103295187 GAATAATATAATA
1 GAATAAAAT-ATA
**
103295200 GAATATGATATA
1 GAATAAAATATA
103295212 GAATAAAATATA
1 GAATAAAATATA
103295224 -AATAAAATATA
1 GAATAAAATATA
103295235 ATGAAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 11 0.35
12 13 0.42
13 7 0.23
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.29
Consensus pattern (12 bp):
GAATAAAATATA
Found at i:103295229 original size:11 final size:11
Alignment explanation
Indices: 103295207--103295248 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
103295197 ATAGAATATG
103295207 ATATAGAATAAA
1 ATATA-AATAAA
103295219 ATATAAATAAA
1 ATATAAATAAA
*
103295230 ATAT-AATGAA
1 ATATAAATAAA
*
103295240 ATAAAAATA
1 ATATAAATA
103295249 CTATCCTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 8 0.31
11 13 0.50
12 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (11 bp):
ATATAAATAAA
Found at i:103298214 original size:15 final size:15
Alignment explanation
Indices: 103298194--103298223 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103298184 TATGGTATCG
103298194 TATCTTGGATTTCCT
1 TATCTTGGATTTCCT
*
103298209 TATCTTGGTTTTCCT
1 TATCTTGGATTTCCT
103298224 ATTGTTCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.20, G:0.13, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCCT
Found at i:103302866 original size:6 final size:5
Alignment explanation
Indices: 103302837--103302915 Score: 72
Period size: 6 Copynumber: 14.8 Consensus size: 5
103302827 TATGTCTTTC
*
103302837 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT AAAAT
103302884 AAAAT AAAAT AAGAAT AAGAAT AAGAAT AAAA
1 AAAAT AAAAT AA-AAT AA-AAT AA-AAT AAAA
103302916 AATAGAAGGA
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
3 3 0.05
5 27 0.41
6 36 0.55
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:103302869 original size:17 final size:16
Alignment explanation
Indices: 103302837--103302915 Score: 74
Period size: 17 Copynumber: 4.9 Consensus size: 16
103302827 TATGTCTTTC
103302837 AAAATAAAAT--AATA
1 AAAATAAAATAAAATA
* *
103302851 AAATTGAAATGAAAATA
1 AAAATAAAAT-AAAATA
103302868 AAAATAAAAATAAAAT-
1 AAAAT-AAAATAAAATA
103302884 AAAATAAAATAAGAATA
1 AAAATAAAATAA-AATA
*
103302901 AGAATAAGAATAAAA
1 AAAATAA-AATAAAA
103302916 AATAGAAGGA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
14 8 0.15
15 7 0.13
16 8 0.15
17 21 0.40
18 9 0.17
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:103302908 original size:12 final size:11
Alignment explanation
Indices: 103302868--103302915 Score: 71
Period size: 11 Copynumber: 4.4 Consensus size: 11
103302858 AATGAAAATA
*
103302868 AAAATAAAAAT
1 AAAATAAGAAT
103302879 AAAATAA-AAT
1 AAAATAAGAAT
103302889 AAAATAAGAAT
1 AAAATAAGAAT
103302900 AAGAATAAGAAT
1 AA-AATAAGAAT
103302912 AAAA
1 AAAA
103302916 AATAGAAGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.29
11 14 0.40
12 11 0.31
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (11 bp):
AAAATAAGAAT
Found at i:103332712 original size:20 final size:20
Alignment explanation
Indices: 103332687--103332750 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
103332677 CATATACGTG
103332687 CCCCTGTTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGATA
* * *
103332707 CCCCTGAATTGTACATAC-ATG
1 CCCCTG-TTTGTAC-TTCGATA
103332728 CCCCTGTTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGATA
103332748 CCC
1 CCC
103332751 TTGAATTGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 2 0.06
20 17 0.49
21 14 0.40
22 2 0.06
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.34
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGATA
Found at i:103332720 original size:21 final size:21
Alignment explanation
Indices: 103332694--103332758 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
103332684 GTGCCCCTGT
103332694 TTGTACTTCGATACCCCTGAA
1 TTGTACTTCGATACCCCTGAA
* * *
103332715 TTGTACATAC-ATGCCCCTG-T
1 TTGTAC-TTCGATACCCCTGAA
*
103332735 TTGTACTTCGATACCCTTGAA
1 TTGTACTTCGATACCCCTGAA
103332756 TTG
1 TTG
103332759 CACATACATG
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 2 0.06
20 13 0.38
21 17 0.50
22 2 0.06
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (21 bp):
TTGTACTTCGATACCCCTGAA
Found at i:103332795 original size:40 final size:40
Alignment explanation
Indices: 103332667--103332856 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
103332657 ATTAATTATA
* * *
103332667 CCTTGAACTGCATATACGTGCCCCTGTTTGTACTTCGATAC
1 CCTTGAATTGCACATACATGCCCCTG-TTGTACTTCGATAC
* *
103332708 CCCTGAATTGTACATACATGCCCCTGTTTGTACTTCGATAC
1 CCTTGAATTGCACATACATGCCCCTG-TTGTACTTCGATAC
*
103332749 CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGGTAC
1 CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGATAC
* * * *
103332789 CATTGAATAGCACATACTTGCCCCTGTTGTACTTCGGTAC
1 CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGATAC
* * *
103332829 CGTTGAATAGCACATACTTGCCCCTGTT
1 CCTTGAATTGCACATACATGCCCCTGTT
103332857 TACACTCTAG
Statistics
Matches: 137, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 77 0.56
41 60 0.44
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (40 bp):
CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGATAC
Found at i:103335633 original size:27 final size:27
Alignment explanation
Indices: 103335602--103335779 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
103335592 TAAATTGTAC
103335602 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
103335629 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
103335655 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
103335683 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
103335711 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
103335738 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
103335765 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
103335780 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:103335716 original size:82 final size:81
Alignment explanation
Indices: 103335603--103335758 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
103335593 AAATTGTACA
* *
103335603 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
103335667 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
103335684 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
103335749 TGCGAGTTGA
65 TGCGAATTGA
103335759 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:103335770 original size:82 final size:81
Alignment explanation
Indices: 103335599--103335779 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
103335589 GATTAAATTG
* *
103335599 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
103335664 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
103335680 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
103335744 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
103335762 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
103335780 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:103337454 original size:28 final size:28
Alignment explanation
Indices: 103337421--103337482 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
103337411 CTGGTATGAG
*
103337421 TATGAAAATGGTTCGGCTAGGCTTGGAT
1 TATGAAAATGGTTCAGCTAGGCTTGGAT
103337449 TATGAAAATGGTTCAGCTAGGCTTGGAT
1 TATGAAAATGGTTCAGCTAGGCTTGGAT
*
103337477 TTTGAA
1 TATGAA
103337483 GAAGTTGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.34
Consensus pattern (28 bp):
TATGAAAATGGTTCAGCTAGGCTTGGAT
Found at i:103342940 original size:43 final size:43
Alignment explanation
Indices: 103342893--103342982 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 43
103342883 ATCGATTTGA
*
103342893 GATTTACGTCTAAGACCATGTCTGGGACA-TCGACATC-ATATTT
1 GATTT-CGTCTAAGACCATGTCTAGGACAGT-GACATCGATATTT
* * *
103342936 GATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCGATATTT
1 GATTTCGTCTAAGACCATGTCTAGGACAGTGACATCGATATTT
103342979 GATT
1 GATT
103342983 ACATGTATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 25 0.61
43 16 0.39
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (43 bp):
GATTTCGTCTAAGACCATGTCTAGGACAGTGACATCGATATTT
Found at i:103342957 original size:42 final size:44
Alignment explanation
Indices: 103342842--103342982 Score: 114
Period size: 43 Copynumber: 3.3 Consensus size: 44
103342832 CATAGGATTC
* * * * * *
103342842 CGATATGTGATTTA-GTGTAAAACCACGTCTGGGAC-GTTGGCAT
1 CGATATTTGATTTACGTCTAAGACCATGTCTAGGACAG-TGACAT
* *
103342885 CGAT-TTGAGATTTACGTCTAAGACCATGTCTGGGACA-TCGACAT
1 CGATATT-TGATTTACGTCTAAGACCATGTCTAGGACAGT-GACAT
* * *
103342929 C-ATATTTGATTT-CGTGTAAGACCCTGTCTAGGACAGTGGCAT
1 CGATATTTGATTTACGTCTAAGACCATGTCTAGGACAGTGACAT
103342971 CGATATTTGATT
1 CGATATTTGATT
103342983 ACATGTATGA
Statistics
Matches: 80, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
42 26 0.32
43 29 0.36
44 25 0.31
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (44 bp):
CGATATTTGATTTACGTCTAAGACCATGTCTAGGACAGTGACAT
Found at i:103346630 original size:35 final size:35
Alignment explanation
Indices: 103346590--103346745 Score: 152
Period size: 35 Copynumber: 4.5 Consensus size: 35
103346580 CAAAGTTCAT
*
103346590 TATATCATCACATATGGCCAAATATACAAGTATGA
1 TATATCATCACATATGGCCAAATATACAAGTATAA
* * * *
103346625 TATATCATCATATATGACCGAATATACAAGCT-CAA
1 TATATCATCACATATGGCCAAATATACAAG-TATAA
* * * * * * *
103346660 TAAAACATCACATGTAGTCAAATATTCAAGTTTAA
1 TATATCATCACATATGGCCAAATATACAAGTATAA
* * * *
103346695 TATAACATCAAATGTGGCCAAATATACAAGTTTAA
1 TATATCATCACATATGGCCAAATATACAAGTATAA
103346730 TATATCATCACATATG
1 TATATCATCACATATG
103346746 TACATACCTA
Statistics
Matches: 96, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
34 1 0.01
35 94 0.98
36 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.30
Consensus pattern (35 bp):
TATATCATCACATATGGCCAAATATACAAGTATAA
Found at i:103348585 original size:20 final size:20
Alignment explanation
Indices: 103348548--103348585 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
103348538 TATTTAGGGC
*
103348548 AAAAATTTTCTAAGTTTTGT
1 AAAAATTTTCTAACTTTTGT
103348568 AAAAA-TTTCTAAACTTTT
1 AAAAATTTTCT-AACTTTT
103348586 CGGTTTAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (20 bp):
AAAAATTTTCTAACTTTTGT
Found at i:103356351 original size:44 final size:46
Alignment explanation
Indices: 103356297--103356416 Score: 145
Period size: 44 Copynumber: 2.6 Consensus size: 46
103356287 TACAAGCTAG
** * *
103356297 TGTAAGACCTGTCTCCGACATGGCGTCATCTTGTTATG-T-GTCAA
1 TGTAAGACCTGTCTGGGACATGGCGTCATCTTGATATGTTAGCCAA
* * *
103356341 TGTAAGACCTGTCTGGGACATGGCATCGATTTTGATGTGTTAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCGTC-ATCTTGATATGTTAGCCAA
103356388 TGTAAGACCATGTCTGGGACATGGCGTCA
1 TGTAAGACC-TGTCTGGGACATGGCGTCA
103356417 GCATCTTATC
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
44 24 0.38
45 8 0.12
46 1 0.02
47 14 0.22
48 17 0.27
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TGTAAGACCTGTCTGGGACATGGCGTCATCTTGATATGTTAGCCAA
Found at i:103364462 original size:41 final size:41
Alignment explanation
Indices: 103364400--103364546 Score: 163
Period size: 41 Copynumber: 3.6 Consensus size: 41
103364390 TTATACCCTA
* * * ** *
103364400 AATTGCACATGCGTGCACCTATTTGTACTTTAGTTCCCCAG
1 AATTACACATACGTGCCCCTATTTGTACTTCGGTACCCCAG
103364441 AATTACACATACGTGCCCCTATTTGTACTTCGGTACCCCTA-
1 AATTACACATACGTGCCCCTATTTGTACTTCGGTACCCC-AG
* * * * *
103364482 AATTGCACATATGTGCCTCTGTTTGTACTTCGGTACCCCTG
1 AATTACACATACGTGCCCCTATTTGTACTTCGGTACCCCAG
103364523 AA-TAGCACATACGTGCCCCTATTT
1 AATTA-CACATACGTGCCCCTATTT
103364547 ACACTCTAGT
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
40 1 0.01
41 86 0.98
42 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (41 bp):
AATTACACATACGTGCCCCTATTTGTACTTCGGTACCCCAG
Found at i:103364490 original size:82 final size:82
Alignment explanation
Indices: 103364395--103364546 Score: 209
Period size: 82 Copynumber: 1.9 Consensus size: 82
103364385 ATTAATTATA
* * *
103364395 CCCTAAATTGCACATGCGTGCAC-CTATTTGTACTTTAGTTCCCCAGAATTA-CACATACGTGCC
1 CCCTAAATTGCACATACGTGC-CTCTATTTGTACTTCAGTACCCCAGAA-TAGCACATACGTGCC
103364458 CCTATTTGTACTTCGGTAC
64 CCTATTTGTACTTCGGTAC
* * * *
103364477 CCCTAAATTGCACATATGTGCCTCTGTTTGTACTTCGGTACCCCTGAATAGCACATACGTGCCCC
1 CCCTAAATTGCACATACGTGCCTCTATTTGTACTTCAGTACCCCAGAATAGCACATACGTGCCCC
103364542 TATTT
66 TATTT
103364547 ACACTCTAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
81 3 0.05
82 58 0.95
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (82 bp):
CCCTAAATTGCACATACGTGCCTCTATTTGTACTTCAGTACCCCAGAATAGCACATACGTGCCCC
TATTTGTACTTCGGTAC
Found at i:103368438 original size:17 final size:17
Alignment explanation
Indices: 103368418--103368453 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
103368408 TAATTTAAAT
*
103368418 AATTAATTAAATTTCTC
1 AATTAAATAAATTTCTC
*
103368435 AATTAAATAATTTTCTC
1 AATTAAATAAATTTCTC
103368452 AA
1 AA
103368454 CTCAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTAAATAAATTTCTC
Found at i:103368594 original size:4 final size:4
Alignment explanation
Indices: 103368579--103368613 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
103368569 TTTTCACTTC
*
103368579 AATT ATTT AATT AATT AATT AATT AATT AA-T AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT
103368614 CAAAAAACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:103372675 original size:20 final size:20
Alignment explanation
Indices: 103372646--103372689 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
103372636 TGTGTACGTA
* *
103372646 GGTATCGATATTGACTCTAG
1 GGTATCGATACTGACACTAG
*
103372666 GGTATTGATACTGACACTAG
1 GGTATCGATACTGACACTAG
103372686 GGTA
1 GGTA
103372690 CGGATATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (20 bp):
GGTATCGATACTGACACTAG
Found at i:103372695 original size:20 final size:20
Alignment explanation
Indices: 103372652--103372695 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
103372642 CGTAGGTATC
* * **
103372652 GATATTGACTCTAGGGTATT
1 GATACTGACACTAGGGTACG
103372672 GATACTGACACTAGGGTACG
1 GATACTGACACTAGGGTACG
103372692 GATA
1 GATA
103372696 TTTTCTCTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (20 bp):
GATACTGACACTAGGGTACG
Found at i:103379572 original size:27 final size:27
Alignment explanation
Indices: 103379534--103379588 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
103379524 AGAAATTGGG
103379534 TAAGTGTGAGTTTTGGTTAACGGAGGT
1 TAAGTGTGAGTTTTGGTTAACGGAGGT
103379561 TAAGTGTGAGTTTTGGTTAACGGAGGT
1 TAAGTGTGAGTTTTGGTTAACGGAGGT
103379588 T
1 T
103379589 GTATTCCTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.04, G:0.36, T:0.38
Consensus pattern (27 bp):
TAAGTGTGAGTTTTGGTTAACGGAGGT
Found at i:103384372 original size:69 final size:70
Alignment explanation
Indices: 103384240--103384372 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
103384230 TAGTTTATTA
* * * * * *
103384240 CTAATTACTTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
103384305 CTTAG
66 CTTAG
103384310 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
103384373 GTTATGTACT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 35 0.61
70 22 0.39
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:103385837 original size:47 final size:47
Alignment explanation
Indices: 103385760--103386019 Score: 407
Period size: 47 Copynumber: 5.6 Consensus size: 47
103385750 TATTTGAATA
*
103385760 AATGTGAAAGTG--TATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
103385805 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
103385852 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
103385899 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
103385946 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
103385993 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
103386020 TCCCGAAGGG
Statistics
Matches: 198, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 12 0.06
47 186 0.94
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:103387055 original size:12 final size:12
Alignment explanation
Indices: 103387038--103387063 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
103387028 TGTGTACCAC
103387038 TATTGTTACTGT
1 TATTGTTACTGT
103387050 TATTGTTACTGT
1 TATTGTTACTGT
103387062 TA
1 TA
103387064 CCCTTACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.08, G:0.15, T:0.58
Consensus pattern (12 bp):
TATTGTTACTGT
Found at i:103392082 original size:37 final size:37
Alignment explanation
Indices: 103392032--103392110 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
103392022 TTATTATGAA
* * *
103392032 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGT
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
103392069 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
103392106 GTCTT
1 GTCTT
103392111 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:103392307 original size:47 final size:47
Alignment explanation
Indices: 103392229--103392580 Score: 524
Period size: 47 Copynumber: 7.4 Consensus size: 47
103392219 CCCTTCGGGA
* * * ** * * *
103392229 CTTATCACATTTATGCACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
103392276 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103392323 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
103392370 CTTATTACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103392417 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103392466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103392513 CTTATCACATATATACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
103392562 CTTATCACACATATACACT
1 CTTATCACATATATACACT
103392581 GTCTTGGCTG
Statistics
Matches: 279, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 189 0.68
49 90 0.32
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103392458 original size:96 final size:96
Alignment explanation
Indices: 103392229--103392580 Score: 532
Period size: 96 Copynumber: 3.7 Consensus size: 96
103392219 CCCTTCGGGA
* * ** * * * * *
103392229 CTTATCACAT-T-TATGCACTTTCACATCCATCATGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
103392292 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
103392323 CTTA-C-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
103392386 ACTTTCACATTCATCACATCGACTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
103392417 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
103392482 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
103392513 CTTATCACATATATACACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
103392578 ACT
66 ACT
103392581 GTCTTGGCTG
Statistics
Matches: 234, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
92 2 0.01
93 2 0.01
94 79 0.34
95 1 0.00
96 150 0.64
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103392485 original size:143 final size:144
Alignment explanation
Indices: 103392281--103392576 Score: 540
Period size: 143 Copynumber: 2.1 Consensus size: 144
103392271 TCGGCCCTGT
103392281 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCA
*
103392346 CATTCATCACATCGGCCATTAGGCCTTATTACATATAT-ACACTTTCACATTCATCACATCGACT
66 CATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATCGACT
103392410 ATTAGGCCTTATCA
131 ATTAGGCCTTATCA
* *
103392424 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCA
*
103392489 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGC
66 CATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACACTTTCACATTCATCACATCGAC
103392554 TATTAGGCCTTATCA
130 TATTAGGCCTTATCA
103392569 CACATATA
1 CACATATA
103392577 CACTGTCTTG
Statistics
Matches: 146, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
143 100 0.68
145 46 0.32
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (144 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATCGACT
ATTAGGCCTTATCA
Found at i:103395052 original size:30 final size:31
Alignment explanation
Indices: 103395026--103395084 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
103395016 GTAAATACTC
*
103395026 AAAATTT-AAGGGGCTAA-AGTGTAAATATGA
1 AAAATTTGAA-GGACTAATAGTGTAAATATGA
103395056 AAAATTTGAAGGACTAATAGTGTAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
103395085 TTTAAGGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:103397170 original size:44 final size:45
Alignment explanation
Indices: 103397092--103397195 Score: 138
Period size: 44 Copynumber: 2.3 Consensus size: 45
103397082 CTGTGGCATC
*
103397092 ACCATAGCTGAAAGACGCTATGGCATCAAGATTCAGACGAGTAAG
1 ACCATAGCTGAAAGACGCTATGGCATCAAGATTCAAACGAGTAAG
** * *
103397137 ACCATAGCTGAAAGAC-CTATGGCATCGTGATTCAAATGTGTAAG
1 ACCATAGCTGAAAGACGCTATGGCATCAAGATTCAAACGAGTAAG
* *
103397181 ACCATGGTTGAAAGA
1 ACCATAGCTGAAAGA
103397196 TACCATGGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
44 36 0.69
45 16 0.31
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (45 bp):
ACCATAGCTGAAAGACGCTATGGCATCAAGATTCAAACGAGTAAG
Found at i:103397229 original size:46 final size:46
Alignment explanation
Indices: 103397177--103397394 Score: 337
Period size: 46 Copynumber: 4.7 Consensus size: 46
103397167 TTCAAATGTG
103397177 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
103397223 TAAGACCATGCTTGAAAGATACCCTGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
*
103397269 TAAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * *
103397315 TAAGACCTTGGTTGAAAGATATCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * *
103397361 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
103397395 TCGAAGATAA
Statistics
Matches: 156, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:103406980 original size:20 final size:20
Alignment explanation
Indices: 103406939--103406980 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
103406929 AAAAGTTTTT
* *
103406939 ATCTTTTTTTCAAGAATTTG
1 ATCTTATTTTCAAGAATATG
103406959 ATCTTATTTTC-AGATATATG
1 ATCTTATTTTCAAGA-ATATG
103406979 AT
1 AT
103406981 ACTAAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (20 bp):
ATCTTATTTTCAAGAATATG
Found at i:103407389 original size:2 final size:2
Alignment explanation
Indices: 103407377--103407418 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
103407367 AACCCAAGAT
103407377 TC TC ATC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC -TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
103407419 ATATGTATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.02, C:0.48, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:103408783 original size:16 final size:18
Alignment explanation
Indices: 103408757--103408793 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
103408747 GTTTTATTAA
103408757 TTTTGTTAGGG-TTAAAG
1 TTTTGTTAGGGATTAAAG
*
103408774 TTTT-TTAGGGATTAAGG
1 TTTTGTTAGGGATTAAAG
103408791 TTT
1 TTT
103408794 AAAGGGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (18 bp):
TTTTGTTAGGGATTAAAG
Found at i:103417113 original size:5 final size:5
Alignment explanation
Indices: 103417098--103417127 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
103417088 CTTTTTAGGT
103417098 ATAATA ATAAA ATAAA ATAAA ATAAA ATAA
1 ATAA-A ATAAA ATAAA ATAAA ATAAA ATAA
103417128 CTAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:103417290 original size:22 final size:22
Alignment explanation
Indices: 103417260--103417302 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
103417250 TTACTTAGTA
* * *
103417260 CTTCGTCTTCTTCTTCTTCTTT
1 CTTCATCTTCATCTTCATCTTT
103417282 CTTCATCTTCATCTTCATCTT
1 CTTCATCTTCATCTTCATCTT
103417303 CATTTCAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.33, G:0.02, T:0.58
Consensus pattern (22 bp):
CTTCATCTTCATCTTCATCTTT
Found at i:103417304 original size:6 final size:6
Alignment explanation
Indices: 103417260--103417309 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
103417250 TTACTTAGTA
* * *
103417260 CTTCGT CTTCTT CTTCTT CTT--T CTTCAT CTTCAT CTTCAT CTTCAT
1 CTTCAT CTTCAT CTTCAT CTTCAT CTTCAT CTTCAT CTTCAT CTTCAT
103417306 -TTCA
1 CTTCA
103417310 GTGTTTTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
4 4 0.10
5 4 0.10
6 33 0.80
ACGTcount: A:0.10, C:0.32, G:0.02, T:0.56
Consensus pattern (6 bp):
CTTCAT
Found at i:103423542 original size:11 final size:10
Alignment explanation
Indices: 103423520--103423549 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
103423510 TCATATATAT
103423520 TTAAAAAAAA
1 TTAAAAAAAA
103423530 TTAAAATAAAA
1 TTAAAA-AAAA
103423541 TTAAAAAAA
1 TTAAAAAAA
103423550 TACTTTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
TTAAAAAAAA
Found at i:103423656 original size:10 final size:10
Alignment explanation
Indices: 103423633--103423670 Score: 51
Period size: 9 Copynumber: 3.7 Consensus size: 10
103423623 ATTTCTTTAA
103423633 TTTTAATATATT
1 TTTTAA-AT-TT
103423645 TTTTAAA-TT
1 TTTTAAATTT
103423654 TTTTAAATTT
1 TTTTAAATTT
103423664 TTTTAAA
1 TTTTAAA
103423671 AAATATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
10 9 0.36
11 1 0.04
12 6 0.24
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:103426946 original size:11 final size:11
Alignment explanation
Indices: 103426932--103426981 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
103426922 TTTCAATATT
103426932 CTCTCAAATTC
1 CTCTCAAATTC
103426943 CTCTCAAA-T-
1 CTCTCAAATTC
*
103426952 CTCTCAAATTT
1 CTCTCAAATTC
* *
103426963 CTCTTAAACTC
1 CTCTCAAATTC
103426974 CTCTCAAA
1 CTCTCAAA
103426982 ACTCTCGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 8 0.24
10 2 0.06
11 23 0.70
ACGTcount: A:0.30, C:0.34, G:0.00, T:0.36
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:103426954 original size:20 final size:21
Alignment explanation
Indices: 103426931--103426981 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
103426921 TTTTCAATAT
103426931 TCTCTCAAATTCCTCTCAAA-
1 TCTCTCAAATTCCTCTCAAAC
* *
103426951 TCTCTCAAATTTCTCTTAAAC
1 TCTCTCAAATTCCTCTCAAAC
103426972 TCCTCTCAAA
1 T-CTCTCAAA
103426982 ACTCTCGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 18 0.67
21 1 0.04
22 8 0.30
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.37
Consensus pattern (21 bp):
TCTCTCAAATTCCTCTCAAAC
Found at i:103428153 original size:7 final size:7
Alignment explanation
Indices: 103428141--103428167 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
103428131 TAGTGGATTC
103428141 GTATTTA
1 GTATTTA
103428148 GTATTTA
1 GTATTTA
103428155 GTATTTA
1 GTATTTA
103428162 GTATTT
1 GTATTT
103428168 TTTATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:103429470 original size:116 final size:116
Alignment explanation
Indices: 103429193--103429694 Score: 887
Period size: 116 Copynumber: 4.3 Consensus size: 116
103429183 TATTTGTACA
* *
103429193 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
103429258 TGTAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
103429310 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
103429375 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * *
103429426 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTGTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
103429491 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
103429542 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
103429607 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
103429658 AATATTTTGAATATTTTTATATTATTTCATGTAATAA
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAA
103429695 AATATAAATA
Statistics
Matches: 374, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
116 294 0.79
117 80 0.21
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:103429508 original size:61 final size:61
Alignment explanation
Indices: 103429440--103429625 Score: 194
Period size: 61 Copynumber: 3.1 Consensus size: 61
103429430 TTTTGAATAT
*
103429440 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTGTTAAATAAAGTAATTATAATTTAC
1 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
* * * * * * *
103429501 TTTTATATT-TTT-A----ATAAAATGGAAA--TTATTTTAAATAAGGCAACATTTTGAA--TAT
1 TTTTATATTATTTCATGTGATAATAT-AAAAGGTTGTTTTAAATAAAG-TA-ATTAT-AATTTAC
103429556 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
1 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
103429617 TTTTATATT
1 TTTTATATT
103429626 TTTAATAAAA
Statistics
Matches: 96, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
54 12 0.12
55 18 0.19
56 10 0.10
57 3 0.03
59 3 0.03
60 10 0.10
61 27 0.28
62 13 0.14
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (61 bp):
TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
Found at i:103433159 original size:125 final size:126
Alignment explanation
Indices: 103432722--103433248 Score: 828
Period size: 126 Copynumber: 4.2 Consensus size: 126
103432712 TTCAAAAACC
103432722 ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
* *
103432787 TGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACC
66 TGAAGCGTTTTTGACACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
* * *
103432848 ACTGTAGCAAAAGAGCATCCACGTGGGAGATTC-TTCTAGTAATTTTGCTGAAAATGCATCCTGC
1 ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTC-AGTACTTTTGCTGAAAATGCATCCTGC
*
103432912 TTGAAGCGTTTTT-ACCACTATTTGTGTAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
65 TTGAAGCGTTTTTGA-CACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
* *
103432974 ATTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCT-AACAATGCATCCTGC
1 ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAA-AATGCATCCTGC
* ** *
103433038 TTGAAGCGTTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTA-TTTTTCAGATACT
65 TTGAAGCGTTTTTGACACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
* * * * *
103433099 ACTGTAGCAAAAAAGTGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAATACATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
*
103433164 TGAAGCGTTTTTGACACTATTTGTGCAGACACGTCTTCTCAAATTTATTTTTTCAGAGACT
66 TGAAGCGTTTTTGACACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
*
103433225 ACTGTAGCAAAAGAACGTCCACGT
1 ACTGTAGCAAAAGAGCGTCCACGT
103433249 AGAAGCTTTT
Statistics
Matches: 364, Mismatches: 30, Indels: 14
0.89 0.07 0.03
Matches are distributed among these distances:
125 117 0.32
126 243 0.67
127 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (126 bp):
ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
TGAAGCGTTTTTGACACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
Found at i:103433233 original size:251 final size:252
Alignment explanation
Indices: 103432722--103433256 Score: 835
Period size: 251 Copynumber: 2.1 Consensus size: 252
103432712 TTCAAAAACC
*
103432722 ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
**
103432787 TGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACCACTG
66 TGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACCACTG
* * *
103432852 TAGCAAAAGAGCATCCACGTGGGAGATTCTTCTAGTAATTTTGCTGAAAATGCATCCTGCTTGAA
131 TAGCAAAAAAGCATCCACGTGAGAGATTCTTCTAGTAATTTTGCTGAAAATACATCCTGCTTGAA
*
103432917 GCGTTTTTACCACTATTTGTGTAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
196 GCGTTTTTACCACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
*
103432974 ATTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCT-AACAATGCATCCTGC
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAA-AATGCATCCTGC
* * * *
103433038 TTGAAGCGTTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTA-TTTTTCAGATACTACT
65 TTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACCACT
** * * *
103433102 GTAGCAAAAAAGTGTCCACGTGAGAGCTTCTT-TCAGTACTTTTGCTGACAATACATCCTGCTTG
130 GTAGCAAAAAAGCATCCACGTGAGAGATTCTTCT-AGTAATTTTGCTGAAAATACATCCTGCTTG
*
103433166 AAGCGTTTTTGA-CACTATTTGTGCAGACACGTCTTCTCAAATTTATTTTTTCAGAGACT
194 AAGCGTTTTT-ACCACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
* *
103433225 ACTGTAGCAAAAGAACGTCCACGTAGAAGCTT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTT
103433257 TTTTAGATTA
Statistics
Matches: 259, Mismatches: 21, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
250 1 0.00
251 154 0.59
252 104 0.40
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (252 bp):
ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
TGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACCACTG
TAGCAAAAAAGCATCCACGTGAGAGATTCTTCTAGTAATTTTGCTGAAAATACATCCTGCTTGAA
GCGTTTTTACCACTATTTGTGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
Found at i:103433480 original size:95 final size:98
Alignment explanation
Indices: 103433336--103433532 Score: 242
Period size: 95 Copynumber: 2.0 Consensus size: 98
103433326 TAAATACTCT
* * * * **
103433336 AAAACCCTAAACCCTAAAATCCTAATCTAAATTTTTTTAAATTTATAATTAATTTACTCAAGTAA
1 AAAACCATAAACACTAAAATCCTAATCTAAATTTTTTTAAAATTATAATTAATTTAATCAACAAA
* *
103433401 CCCTAAACCCTAATTTATTTGA-TTTTTCCTTA
66 CACTAAACCCTAATTTATTTAATTTTTTCCTTA
*
103433433 AAAACCATAAACACT-AAA-CCATAATCT-AA-TTTTTTAAAATTAGTAATTAATTTAATTAACA
1 AAAACCATAAACACTAAAATCC-TAATCTAAATTTTTTTAAAATTA-TAATTAATTTAATCAACA
*
103433494 AACACTAAACCTTAATTTATTTAATTTTTTTCCTTA
64 AACACTAAACCCTAATTTATTTAA-TTTTTTCCTTA
103433530 AAA
1 AAA
103433533 CTCTAAACTT
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
94 12 0.14
95 39 0.45
96 9 0.10
97 26 0.30
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.40
Consensus pattern (98 bp):
AAAACCATAAACACTAAAATCCTAATCTAAATTTTTTTAAAATTATAATTAATTTAATCAACAAA
CACTAAACCCTAATTTATTTAATTTTTTCCTTA
Found at i:103435486 original size:28 final size:28
Alignment explanation
Indices: 103435446--103435588 Score: 105
Period size: 28 Copynumber: 5.0 Consensus size: 28
103435436 ATGGTTTTGG
103435446 AAAAAATAAATTAGGGTTTAGAGTTTTT
1 AAAAAATAAATTAGGGTTTAGAGTTTTT
**
103435474 AAAAAATAAATTAATGTTTATG-GTTTTT
1 AAAAAATAAATTAGGGTTTA-GAGTTTTT
** * *
103435502 AAAAAATAAATTA-AATTAAGATTATTTTTTAT
1 AAAAAATAAATTAGGGTTTAG---A-GTTTT-T
103435534 AAAAAATAAATTAGGGTTTA-AGGATTTTT
1 AAAAAATAAATTAGGGTTTAGA-G-TTTTT
* * *
103435563 -AAAAATAAATTTGTGTTTAGGGTTTT
1 AAAAAATAAATTAGGGTTTAGAGTTTT
103435589 AGGATTTTTG
Statistics
Matches: 91, Mismatches: 14, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
26 1 0.01
27 7 0.08
28 55 0.60
29 3 0.03
30 4 0.04
31 4 0.04
32 14 0.15
33 3 0.03
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.43
Consensus pattern (28 bp):
AAAAAATAAATTAGGGTTTAGAGTTTTT
Found at i:103435985 original size:14 final size:14
Alignment explanation
Indices: 103435963--103436004 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
103435953 CTACAGGAGT
103435963 TTCTGAAAAAATAA
1 TTCTGAAAAAATAA
* * *
103435977 TTTTGAAAAGATGA
1 TTCTGAAAAAATAA
103435991 -TCTGAAAAAATAA
1 TTCTGAAAAAATAA
103436004 T
1 T
103436005 GTCAAAAATG
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (14 bp):
TTCTGAAAAAATAA
Found at i:103435988 original size:125 final size:126
Alignment explanation
Indices: 103435697--103436285 Score: 753
Period size: 125 Copynumber: 4.7 Consensus size: 126
103435687 AAGCTGGATG
* ** ** * *
103435697 CTATTTTTCTACAGTAATTTCTG-AAATTTTTTTTTGAGAAGATGGTTATGAAAAAA-ATGGGTA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATA-GTGTA
* * ** * * * **
103435760 AAAAACGCTTTAAGCAGGATATACTGTCAACAAAAGTAATGAAAAAAGCT--CACCTGGATG
65 AAAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACCTGGACA
* * * *
103435820 CTATTTTTCTACAGGAGTTTCTGAAACAATAATTTTGAGAAGATGGTTTTGAAAAAATAGGGTAA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
* * * *
103435885 AAAACGCTTCAAGCAGGATGCACTTTCAGCAAAAGTACT-GAAAAAGCTCCCACATGGACA
66 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACCTGGACA
* * * * *
103435945 CTATTTTTCTACAGGAGTTTCTGAAAAAATAATTTTGAAAAGAT-GATCTGAAAAAATAATGTCA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
*
103436009 AAAATGCTCCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACCTGGACA
66 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACCTGGACA
* * * * *
103436070 CTCTTTTTATACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTTAAAAAACAGTGTCA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
* * * *
103436135 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTTCAAGCTGGACG
66 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACCTGGACA
103436196 CTATTTTTCTACAGTAGTTTCTG-AAAAATAATTTTGA-AATGATGGTTCTGAAAAAATAGTGTA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAA-GATGGTTCTGAAAAAATAGTGTA
103436259 AAAAATGCTTCAAGCAGGATGCACTGT
65 AAAAATGCTTCAAGCAGGATGCACTGT
103436286 AACAACCCGT
Statistics
Matches: 411, Mismatches: 48, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
123 29 0.07
124 119 0.29
125 170 0.41
126 93 0.23
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (126 bp):
CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACCTGGACA
Found at i:103438036 original size:8 final size:8
Alignment explanation
Indices: 103438025--103438050 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
103438015 ATTTAATTAG
103438025 ATTATTTT
1 ATTATTTT
103438033 ATTATTTT
1 ATTATTTT
103438041 ATTATTTT
1 ATTATTTT
103438049 AT
1 AT
103438051 AAATTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
ATTATTTT
Found at i:103438123 original size:13 final size:13
Alignment explanation
Indices: 103438105--103438130 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103438095 AATATAAGAA
103438105 ATTATTATTATAT
1 ATTATTATTATAT
103438118 ATTATTATTATAT
1 ATTATTATTATAT
103438131 TATATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATTATTATAT
Found at i:103439640 original size:18 final size:19
Alignment explanation
Indices: 103439614--103439652 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
103439604 TTGAAATAGT
*
103439614 TTATTTATAAATTAAT-TG
1 TTATATATAAATTAATATG
*
103439632 TTATATATAATTTAATATG
1 TTATATATAAATTAATATG
103439651 TT
1 TT
103439653 TATTTGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TTATATATAAATTAATATG
Found at i:103442708 original size:99 final size:93
Alignment explanation
Indices: 103442519--103442744 Score: 241
Period size: 99 Copynumber: 2.4 Consensus size: 93
103442509 GGAGTAAGTA
* * *
103442519 TGCCGATGCCATGTCCCAGGCATGGTCTTACACTAGCTATCATCAACGAGGCTGATGTCTTGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCAACGAGGCTGATGTCATGTCC
*
103442584 TAGACATGGTCTTACACTAGCTCTCGCATATCTG
66 TAGACATGATCTTACACTAGCTCTCG---A---G
* *
103442618 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAAC-A-CATC-TCGTA-GCTGATG-CATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCAACG-AGGCTGATGTCATGTC
103442678 CTAGACAT-ATCTTACACTAGCTTACGTCTCGAG
65 CTAGACATGATCTTACACTAG----C-TCTCGAG
103442711 -GCCGATGCCATGTCCCAGACATGGTCTTACACTA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTA
103442745 GCACTCGACT
Statistics
Matches: 114, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
92 33 0.29
93 1 0.01
94 11 0.10
95 13 0.11
96 10 0.09
97 5 0.04
98 2 0.02
99 39 0.34
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCAACGAGGCTGATGTCATGTCC
TAGACATGATCTTACACTAGCTCTCGAG
Found at i:103442730 original size:92 final size:98
Alignment explanation
Indices: 103442520--103442838 Score: 285
Period size: 95 Copynumber: 3.3 Consensus size: 98
103442510 GAGTAAGTAT
* * *
103442520 GCCGATGCCATGTCCCAGGCATGGTCTTACACTAGCTATCATCAACGAGGCTGATGTCTTGTCCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCAACGAGGCTGATGTCATGTCCT
* *
103442585 AGACATGGTCTTACACTAGCTCTCGCATATCTGT
66 AGACATGATCTTACACTAGCTCTCG-ATATCTGG
* *
103442619 GCCAATGCCATGTCCCAGACATGGTCTTACACTAAC-A-CATC-TCGTA-GCTGATG-CATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCAACG-AGGCTGATGTCATGTCC
*
103442679 TAGACAT-ATCTTACACTAGCT-TACG-TCTC-GAG
65 TAGACATGATCTTACACTAGCTCT-CGATATCTG-G
* * *
103442711 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCGACTCAAC-A-TC-GATGCCATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTA-TC-A-TCAACGAGGCTGATGTCATGT
* * * * *
103442772 CCCAGACATGGTCTTACACTGGCTCT-TATA-ATGTG
63 CCTAGACATGATCTTACACTAGCTCTCGATATCTG-G
* *
103442807 GCCGATG-CATGTCCCAAACAT-GTCTTATACTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA
103442839 GCTCACACAA
Statistics
Matches: 186, Mismatches: 21, Indels: 31
0.78 0.09 0.13
Matches are distributed among these distances:
91 1 0.01
92 38 0.20
93 1 0.01
94 30 0.16
95 42 0.23
96 33 0.18
97 7 0.04
98 1 0.01
99 33 0.18
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (98 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCAACGAGGCTGATGTCATGTCCT
AGACATGATCTTACACTAGCTCTCGATATCTGG
Found at i:103442813 original size:48 final size:47
Alignment explanation
Indices: 103442520--103442842 Score: 216
Period size: 48 Copynumber: 6.8 Consensus size: 47
103442510 GAGTAAGTAT
* * * *
103442520 GCCGATGCCATGTCCCAGGCATGGTCTTACACTAGCTATCATCAACGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT--ATGTG
* * * * *
103442569 GCTGATGTCTTGTCCTAGACATGGTCTTACACTAGCTCTCGCATATCTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATATGTG
* * * * *
103442618 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAACACATC-T-CGTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATATGTG
* * * * * *
103442665 GCTGATG-CATGTCCTAGACAT-ATCTTACACTAGCT-TACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAT-GTG
* **
103442711 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGACTCAACAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-A-T--ATGTG
* *
103442761 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATGTG
* *
103442807 GCCGATG-CATGTCCCAAACAT-GTCTTATACTAGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
103442843 ACACAATTAA
Statistics
Matches: 211, Mismatches: 45, Indels: 39
0.72 0.15 0.13
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 12 0.06
45 16 0.08
46 26 0.12
47 28 0.13
48 54 0.26
49 37 0.18
50 32 0.15
51 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTG
Found at i:103444992 original size:128 final size:130
Alignment explanation
Indices: 103444764--103445048 Score: 380
Period size: 128 Copynumber: 2.2 Consensus size: 130
103444754 AGGGAGTTAC
* * * * *
103444764 ATGCACTGTCAGCAAAAGTACTG--AAAAAAGCTCCCACTTGAACACTTTTTTTATACAGTAGTT
1 ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAACATGAACACTATTTTTATACAGTAGTT
* *
103444827 TATAAAAAAAATAATTTTGAGAAGATGGTTTTGAAAAAAATAATGTCAAAAATGCTTCATGCAGG
66 TATAAAAAAAATAATTTTGAGAAGATGGTTTTGAAAAAAATAATGTCAAAAATGCTTCAAGAAGG
* * * * *
103444892 ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAAGATGGACGCTATTTTTCTATAGTAGTT
1 ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAACATGAACACTATTTTTATACAGTAGTT
** * *
103444957 T-TTGAAAAAATAATTTTGAGAATATGGTTTT-AAAAAAATAGTGTCAAAAATGCTTCAAGAAGG
66 TATAAAAAAAATAATTTTGAGAAGATGGTTTTGAAAAAAATAATGTCAAAAATGCTTCAAGAAGG
* *
103445020 ATGCACTATCAGTAAAAGTACTGAAAAAA
1 ATGCACTGTCAGCAAAAGTACTGAAAAAA
103445049 TCCCATCTGG
Statistics
Matches: 137, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
128 79 0.58
129 27 0.20
130 31 0.23
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.28
Consensus pattern (130 bp):
ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAACATGAACACTATTTTTATACAGTAGTT
TATAAAAAAAATAATTTTGAGAAGATGGTTTTGAAAAAAATAATGTCAAAAATGCTTCAAGAAGG
Found at i:103445174 original size:25 final size:25
Alignment explanation
Indices: 103445145--103445216 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
103445135 TTACAGCGAG
103445145 AGAAATT-AGAGAAGTTCAAAAGAAT
1 AGAAATTGA-AGAAGTTCAAAAGAAT
* *
103445170 AGAAATTGAAAAAGTTCAGAAGAAT
1 AGAAATTGAAGAAGTTCAAAAGAAT
* *
103445195 ATAAATTGAAGAAGTTGAAAAG
1 AGAAATTGAAGAAGTTCAAAAG
103445217 GTATAGGTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 39 0.98
26 1 0.03
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAAATTGAAGAAGTTCAAAAGAAT
Found at i:103449076 original size:25 final size:24
Alignment explanation
Indices: 103449027--103449078 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
103449017 GACTGTTATA
* *
103449027 AAAATTATAAAATAAATATTAATT
1 AAAATTATAAAATAAAAAATAATT
103449051 AAAATTATATAAATGAAAAAAT-ATT
1 AAAATTATA-AAAT-AAAAAATAATT
103449076 AAA
1 AAA
103449079 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.38
25 10 0.42
26 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AAAATTATAAAATAAAAAATAATT
Found at i:103450628 original size:3 final size:3
Alignment explanation
Indices: 103450614--103450756 Score: 128
Period size: 3 Copynumber: 47.7 Consensus size: 3
103450604 AGTAAAAATG
* * * *
103450614 ATA ATA AAA ATA ATA GTA ATA ATA ATA ATA CT- ATA ATG ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
103450661 ACA ATA ATA ATA ATA GA-A ATC GTA ATG GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
103450706 ATA ATA ATA GAAA ATA ATA GTA ATA GTA AAA ATA ATA ATA ATA GTA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
103450752 ATA AT
1 ATA AT
103450757 TATTGTTATA
Statistics
Matches: 108, Mismatches: 28, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
2 2 0.02
3 103 0.95
4 3 0.03
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:103452828 original size:23 final size:24
Alignment explanation
Indices: 103452780--103452832 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
103452770 ATATATTTTT
103452780 ACTATCTTATGTATATACTTCAAAC
1 ACTATCTTATGTATATA-TTCAAAC
*
103452805 ACTATC-TATAGTATAT-TTCTAAC
1 ACTATCTTAT-GTATATATTCAAAC
103452828 ACTAT
1 ACTAT
103452833 TACTATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 12 0.46
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.42
Consensus pattern (24 bp):
ACTATCTTATGTATATATTCAAAC
Found at i:103459911 original size:14 final size:14
Alignment explanation
Indices: 103459892--103459929 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
103459882 AAGGCAGTGG
103459892 AAGAAAGATCAGGA
1 AAGAAAGATCAGGA
103459906 AAGAAAGATCAGGA
1 AAGAAAGATCAGGA
103459920 AAGAAAGATC
1 AAGAAAGATC
103459930 GCGAGAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.58, C:0.08, G:0.26, T:0.08
Consensus pattern (14 bp):
AAGAAAGATCAGGA
Found at i:103464858 original size:72 final size:72
Alignment explanation
Indices: 103464772--103465288 Score: 502
Period size: 72 Copynumber: 7.0 Consensus size: 72
103464762 GTATTTTGAT
* * * *
103464772 ATTTTTATTTCTATTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGT
1 ATTTTAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
103464837 TGAGGTA
66 TGAGGTA
* * * * *
103464844 ATTTTTATTTCTATTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGATACGT
1 ATTTTAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
103464909 TGAGGTA
66 TGAGGTA
* * * * * *
103464916 ATTTCAATTTCTGTTTTCAAAATTCAACTCAGATTGCAAGAAATGAGTTGAGCCTCAAGACATGC
1 ATTTTAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
103464981 TGAGGT-
66 TGAGGTA
* **
103464987 ATTTTCAATTTCTATTTTTCAAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCA
1 ATTTT-AATTTCTA-TTTTC------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
103465052 GGACACGCTGAGGTA
58 AGACACGCTGAGGTA
* * * * * * * *
103465067 ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGATATGT
1 ATTTTAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
103465132 TGAGGT-
66 TGAGGTA
* * ** *
103465138 ATTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC
1 ATTTT-AATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---AC
*
103465202 ATGCTGAGG-A
62 ACGCTGAGGTA
* * * ** *
103465212 ACTTTCAATTTCTATCTTTCAAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGG
1 A-TTTTAATTTCTAT-TTTC---AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
103465277 CACGCTGAGGTA
61 CACGCTGAGGTA
103465289 TTGGCAATTT
Statistics
Matches: 375, Mismatches: 49, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
71 9 0.02
72 228 0.61
73 5 0.01
74 17 0.05
75 7 0.02
76 9 0.02
77 1 0.00
78 41 0.11
79 54 0.14
80 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
ATTTTAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
TGAGGTA
Found at i:103465156 original size:223 final size:219
Alignment explanation
Indices: 103464790--103465537 Score: 862
Period size: 223 Copynumber: 3.3 Consensus size: 219
103464780 TTCTATTTTC
* * * * * **
103464790 AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTTATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * * *
103464855 TATTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTT
66 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGTTGAGGTATTTT
* * * ** *
103464920 CAATTTCTGTTTTCAAAATTCAACTCAGATTGCAAGAAATGAGTTGAGCCTCAAGACATGCTGAG
131 CAATTTATGTTTTCAAAAATCAACTCA-ATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAG
*
103464985 GTATTTTCAATTTCTATTTTTCAAAAAA
195 GTAATTTCAATTTCTATTTTTC---AAA
* *
103465013 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
103465078 TGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGATATGTTGAGGTATTTT
66 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGTTGAGGTATTTT
103465143 CAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCT
131 CAATTTATGTTTTCAAAAATCAACTCA-ATTGCGAGAGGTGAGTTGAGCCTCAGG---ACATGCT
*
103465207 GAGG-AACTTTCAATTTCTATCTTTCAAA
192 GAGGTAA-TTTCAATTTCTATTTTTCAAA
* * *
103465235 AAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGGCACGCTGAGGTATTGGCAATTTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGG---T---AA----
* *
103465300 TGTTTCTTAATTTATG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
56 --TTTC--AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATA
* *
103465364 TGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTC-ATTGCGAGAGGTGAGTTGAGC
117 TGTTGAGGTATTTTCAATTTATGT-TTTC--AAAAATCAACTCAATTGCGAGAGGTGAGTTGAGC
** *
103465428 CTCAGGACGCGCTGAGGTAATTTCAATTTCTGTTTTTC---
179 CTCAGGACATGCTGAGGTAATTTCAATTTCTATTTTTCAAA
* * * * *
103465466 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCGTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
103465531 TGCTTTC
66 TGTTTTC
103465538 CAATTTCTGC
Statistics
Matches: 455, Mismatches: 46, Indels: 53
0.82 0.08 0.10
Matches are distributed among these distances:
217 7 0.02
218 4 0.01
219 4 0.01
222 51 0.11
223 161 0.35
224 1 0.00
225 30 0.07
228 3 0.01
231 47 0.10
234 29 0.06
235 69 0.15
236 35 0.08
237 2 0.00
238 12 0.03
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (219 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGTTGAGGTATTTT
CAATTTATGTTTTCAAAAATCAACTCAATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGG
TAATTTCAATTTCTATTTTTCAAA
Found at i:103465442 original size:73 final size:72
Alignment explanation
Indices: 103465316--103465537 Score: 286
Period size: 73 Copynumber: 3.1 Consensus size: 72
103465306 TTAATTTATG
* ** * *
103465316 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCA-ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
*
103465381 TTTTTGTC
65 TTTCTGTC
* *
103465389 TTTCAAAAAAATCAACTC-ATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAATTTCA
1 TTTC--AAAAATCAACTCAATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
103465453 ATTTCTGTT
64 ATTTCTGTC
* * *
103465462 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCGTCAGGGCACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCA-ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
103465527 TTTCTG-C
65 TTTCTGTC
103465534 TTTC
1 TTTC
103465538 CAATTTCTGC
Statistics
Matches: 130, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
71 12 0.09
72 4 0.03
73 103 0.79
75 11 0.08
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (72 bp):
TTTCAAAAATCAACTCAATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT
TTCTGTC
Found at i:103465543 original size:14 final size:15
Alignment explanation
Indices: 103465524--103465552 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
103465514 GAGGTATTTT
103465524 CAATTTCTG-CTTTC
1 CAATTTCTGCCTTTC
103465538 CAATTTCTGCCTTTC
1 CAATTTCTGCCTTTC
103465553 AAAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.31, G:0.07, T:0.48
Consensus pattern (15 bp):
CAATTTCTGCCTTTC
Found at i:103465736 original size:174 final size:171
Alignment explanation
Indices: 103465396--103465721 Score: 442
Period size: 174 Copynumber: 1.9 Consensus size: 171
103465386 GTCTTTCAAA
* * *
103465396 AAAATCAACTCATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAATTTCAATTTCTGT
1 AAAATCAACTCATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTCCTGT
* * *
103465461 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCGTCAGGGCACGCTGAGGTATTTTCA
66 TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGCTAAGCCTCAGGGCACGCTGAGGTATTTTCA
** * *
103465526 ATTTCTGCTTTCCAATTTCTGCCTTTCAAAAAAAAAAGAAAG
131 AAGTATGCTTTCCAATTTATGCCTTTC-AAAAAAAAAGAAAG
103465568 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTCCT
1 AAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTCCT
* *
103465633 GTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCT-TGGGTCACATG-TCGAGGTA
64 GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGCTAAGCCTCAGGG-CAC--GCT-GAGGTA
*
103465695 TTTTCAAAGTATGCTTTTTCAATTTAT
125 TTTTCAAAGTATGC-TTTCCAATTTAT
103465722 TTTTGTCAAA
Statistics
Matches: 134, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
172 14 0.10
173 36 0.27
174 56 0.42
175 18 0.13
176 10 0.07
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (171 bp):
AAAATCAACTCATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTCCTGT
TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGCTAAGCCTCAGGGCACGCTGAGGTATTTTCA
AAGTATGCTTTCCAATTTATGCCTTTCAAAAAAAAAGAAAG
Found at i:103467795 original size:3 final size:3
Alignment explanation
Indices: 103467789--103467818 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
103467779 TATTGCTATC
103467789 ATT ATT ATT ATT ATAT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT-T ATT ATT ATT ATT AT
103467819 ATTTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:103467810 original size:16 final size:16
Alignment explanation
Indices: 103467789--103467835 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
103467779 TATTGCTATC
103467789 ATTATTATTATTATAT
1 ATTATTATTATTATAT
103467805 ATTATTATTATTATAT
1 ATTATTATTATTATAT
*
103467821 -TTATATAATATTATA
1 ATTAT-TATTATTATA
103467836 ATAGGTACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 4 0.14
16 25 0.86
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTATTATTATTATAT
Found at i:103467817 original size:22 final size:22
Alignment explanation
Indices: 103467789--103467834 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
103467779 TATTGCTATC
*
103467789 ATTATTAT-TATTATATATTATT
1 ATTATTATAT-TTATATAATATT
103467811 ATTATTATATTTATATAATATT
1 ATTATTATATTTATATAATATT
103467833 AT
1 AT
103467835 AATAGGTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTATTATATTTATATAATATT
Found at i:103488945 original size:20 final size:19
Alignment explanation
Indices: 103488915--103488958 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
103488905 CGGCATTACC
* *
103488915 ATTTTTTTTAATAAATTTT
1 ATTTTTTTTAAAAAATATT
103488934 ATTTTTTATTAAAAAATATT
1 ATTTTTT-TTAAAAAATATT
103488954 ATTTT
1 ATTTT
103488959 ATTAGTAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTTTTTAAAAAATATT
Found at i:103489208 original size:4 final size:4
Alignment explanation
Indices: 103489199--103489244 Score: 58
Period size: 4 Copynumber: 11.2 Consensus size: 4
103489189 AGAGAGGGAG
*
103489199 AAGA AAGA AAGA AAGA AAGA AATA AAGA AAGGA GAAGA AA-A AAGA A
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA-GA -AAGA AAGA AAGA A
103489245 TGACAAGGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 3 0.08
4 28 0.76
5 4 0.11
6 2 0.05
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (4 bp):
AAGA
Found at i:103489394 original size:25 final size:26
Alignment explanation
Indices: 103489356--103489404 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
103489346 GTTTTTAATT
*
103489356 TATTTTAAAGTTA-TTGTGTTAGTTAC
1 TATTATAAAGTTATTTGT-TTAGTTAC
103489382 TATTATAAA-TTATTTGTTTAGTT
1 TATTATAAAGTTATTTGTTTAGTT
103489405 TAATGTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (26 bp):
TATTATAAAGTTATTTGTTTAGTTAC
Found at i:103496818 original size:33 final size:33
Alignment explanation
Indices: 103496769--103496840 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
103496759 GAAGAAGTAA
* * *
103496769 AGTACTGCGGTAGATACG-GACTGGGAGGAGTGG
1 AGTACTGAGGTAGATACGAG-CCGGGAAGAGTGG
*
103496802 AGTACTGAGGTGGATACGAGCCGGGAAGAGTGG
1 AGTACTGAGGTAGATACGAGCCGGGAAGAGTGG
103496835 AGTACT
1 AGTACT
103496841 ATGATGGTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.43, T:0.18
Consensus pattern (33 bp):
AGTACTGAGGTAGATACGAGCCGGGAAGAGTGG
Found at i:103498924 original size:48 final size:47
Alignment explanation
Indices: 103498870--103499032 Score: 130
Period size: 50 Copynumber: 3.3 Consensus size: 47
103498860 ATAATTTAAA
103498870 AAACACAAAAAAATTACATTTATAACAAGTCACAATAAACACTAAACT
1 AAACACAAAAAAATTACATTTATAACAAGTCACAA-AAACACTAAACT
* * * * * * * * * **
103498918 AAACACAAACAATTTATAATGTAATCATAAATTACTAAAAA-AATAATTTT
1 AAACACAAAAAAATTA-CAT-TTATAACAAGTCAC-AAAAACACTAA-ACT
* * *
103498968 AAAAACACAAAAATTTACATTTATAGCAAGTCACAACAAACACTAAACT
1 AAACACA-AAAAAATTACATTTATAACAAGTCACAA-AAACACTAAACT
103499017 AAACACAAAAAAATTA
1 AAACACAAAAAAATTA
103499033 TAATCTAATC
Statistics
Matches: 83, Mismatches: 25, Indels: 14
0.68 0.20 0.11
Matches are distributed among these distances:
48 24 0.29
49 24 0.29
50 25 0.30
51 10 0.12
ACGTcount: A:0.58, C:0.16, G:0.02, T:0.23
Consensus pattern (47 bp):
AAACACAAAAAAATTACATTTATAACAAGTCACAAAAACACTAAACT
Found at i:103499000 original size:99 final size:99
Alignment explanation
Indices: 103498857--103499180 Score: 400
Period size: 99 Copynumber: 3.2 Consensus size: 99
103498847 AAATGACTTT
*
103498857 AAAATAATTTAAAAAACACAAAAAAATTACATTTATAACAAGTCACAATAAACACTAAACTAAAC
1 AAAATAATTTTAAAAACACAAAAAAATTACATTTAT-ACAAGTCACAATAAACACTAAACTAAAC
*
103498922 ACAAACAATTTATAATGTAATCATAAATTACTAAA
65 ACAAACAATTTATAATCTAATCATAAATTACTAAA
* *
103498957 AAAATAATTTTAAAAACAC-AAAAATTTACATTTATAGCAAGTCACAACAAACACTAAACTAAAC
1 AAAATAATTTTAAAAACACAAAAAAATTACATTTATA-CAAGTCACAATAAACACTAAACTAAAC
* *
103499021 ACAAAAAAATTATAATCTAATCATAAATTACTAACAAAATAA
65 ACAAACAATTTATAATCTAATCATAAATTACT------A-AA
* * *
103499063 CTTTAAAATAATTTTAAAAA-ACAAAAAAATTACATTCATAAAAGATCGCAATAAACACTAAACT
1 ----AAAATAATTTTAAAAACACAAAAAAATTACATTTATACAAG-TCACAATAAACACTAAACT
* *
103499127 AAACACAAACAATTTATAACCTAATCATAAATTACTAAC
61 AAACACAAACAATTTATAATCTAATCATAAATTACTAAA
*
103499166 AAAATAACTTTAAAA
1 AAAATAATTTTAAAA
103499181 TAATTAGAAA
Statistics
Matches: 194, Mismatches: 16, Indels: 29
0.81 0.07 0.12
Matches are distributed among these distances:
98 1 0.01
99 84 0.43
100 18 0.09
103 1 0.01
104 1 0.01
105 1 0.01
106 2 0.01
109 5 0.03
110 81 0.42
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (99 bp):
AAAATAATTTTAAAAACACAAAAAAATTACATTTATACAAGTCACAATAAACACTAAACTAAACA
CAAACAATTTATAATCTAATCATAAATTACTAAA
Found at i:103499080 original size:110 final size:107
Alignment explanation
Indices: 103498957--103499247 Score: 404
Period size: 110 Copynumber: 2.7 Consensus size: 107
103498947 AATTACTAAA
* * *
103498957 AAAATAATTTTAAAAACACAAAAATTTACATTTATAGCAAGTCACAACAAACACTAAACTAAACA
1 AAAATAATTTTAAAAA-ACAAAAAATTACATTCATA-AAAGTCACAA-AAACACTAAACTAAACA
*
103499022 CAAAAAAATTATAATCTAATCATAAATTACTAACAAAATAACTTT
63 CAAAAAAATTATAACCTAATCATAAATTACTAACAAAATAACTTT
*
103499067 AAAATAATTTTAAAAAACAAAAAAATTACATTCATAAAAGATCGCAATAAACACTAAACTAAACA
1 AAAATAATTTTAAAAAAC-AAAAAATTACATTCATAAAAG-TCACAA-AAACACTAAACTAAACA
* *
103499132 CAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTT
63 CAAAAAAATTATAACCTAATCATAAATTACTAACAAAATAACTTT
** * *
103499177 AAAATAATTAGAAAAATAAAAAAAATTACATTCATAATAAATCAC-AAAACACTAAACTAAACAC
1 AAAATAATTTTAAAAA-ACAAAAAATTACATTCATAA-AAGTCACAAAAACACTAAACTAAACAC
103499241 AAAAAAA
64 AAAAAAA
103499248 AACAATCCCT
Statistics
Matches: 162, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
108 23 0.14
109 6 0.04
110 130 0.80
111 3 0.02
ACGTcount: A:0.59, C:0.15, G:0.02, T:0.24
Consensus pattern (107 bp):
AAAATAATTTTAAAAAACAAAAAATTACATTCATAAAAGTCACAAAAACACTAAACTAAACACAA
AAAAATTATAACCTAATCATAAATTACTAACAAAATAACTTT
Found at i:103499133 original size:209 final size:207
Alignment explanation
Indices: 103498770--103499180 Score: 621
Period size: 209 Copynumber: 2.0 Consensus size: 207
103498760 AATCATAAAT
* * * *
103498770 AAAATTTACATTTTAACAAATCACAATACACATTAAACTAAACAAATAATTGATAACCTAATCAT
1 AAAATTTACATTTTAACAAATCACAACAAACACTAAACTAAACAAAAAATTGATAACCTAATCAT
* *
103498835 AAATTACTAACAAAATGACTTTAAAATAATTTAAAAAACACAAAAAAATTACATTTATAACAAGT
66 AAATTACTAACAAAATAACTTTAAAATAATTTAAAAAACACAAAAAAATTACATTCATAACAAGT
** *
103498900 CACAATAAACACTAAACTAAACACAAACAATTTATAATGTAATCATAAATTACTAAAAAAATAAT
131 CACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAAAAAAATAAC
103498965 TTTAAAAACACA
196 TTTAAAAACACA
* * *
103498977 AAAATTTACATTTATAGCAAGTCACAACAAACACTAAACTAAACACAAAAAAATT-ATAATCTAA
1 AAAATTTACATTT-TAACAAATCACAACAAACACTAAACT-AA-AC-AAAAAATTGATAACCTAA
*
103499041 TCATAAATTACTAACAAAATAACTTTAAAATAATTTTAAAAA-ACAAAAAAATTACATTCATAA-
62 TCATAAATTACTAACAAAATAACTTTAAAATAATTTAAAAAACACAAAAAAATTACATTCATAAC
* *
103499104 AAGATCGCAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAA
127 AAG-TCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAAAAAA
103499169 ATAACTTTAAAA
191 ATAACTTTAAAA
103499181 TAATTAGAAA
Statistics
Matches: 184, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
207 13 0.07
208 24 0.13
209 90 0.49
210 50 0.27
211 7 0.04
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.26
Consensus pattern (207 bp):
AAAATTTACATTTTAACAAATCACAACAAACACTAAACTAAACAAAAAATTGATAACCTAATCAT
AAATTACTAACAAAATAACTTTAAAATAATTTAAAAAACACAAAAAAATTACATTCATAACAAGT
CACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAAAAAAATAAC
TTTAAAAACACA
Found at i:103500394 original size:28 final size:28
Alignment explanation
Indices: 103500351--103500456 Score: 92
Period size: 28 Copynumber: 3.7 Consensus size: 28
103500341 GAAATCAGAG
*
103500351 TTAA-CTGGGCCTTAGCCCATATCAGTA
1 TTAATCTGGGCCATAGCCCATATCAGTA
*
103500378 TTAATCTGGGCCATAGCCCCT-TACAGTA
1 TTAATCTGGGCCATAGCCCATAT-CAGTA
*
103500406 TCAGAGTATACTGGGCC-TAGCCCATATCAGTA
1 T--TA--AT-CTGGGCCATAGCCCATATCAGTA
* *
103500438 TCAATCTTGGCCATAGCCC
1 TTAATCTGGGCCATAGCCC
103500457 TATTACAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 17
0.74 0.07 0.20
Matches are distributed among these distances:
27 11 0.17
28 28 0.44
30 2 0.03
32 15 0.23
33 8 0.12
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (28 bp):
TTAATCTGGGCCATAGCCCATATCAGTA
Found at i:103500419 original size:61 final size:60
Alignment explanation
Indices: 103500321--103500494 Score: 196
Period size: 60 Copynumber: 2.9 Consensus size: 60
103500311 TCAAGCTTTA
* * *
103500321 CTGGGCCTTAGCCCTATTCAGAAATCAGAGT-TAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCATAGCCCTATT-A-CAATCAGAGTAT-ACTGGGCCTTAGCCCATATCAGTATCAAT
*
103500383 CTGGGCCATAGCCC-CTTACAGTATCAGAGTATACTGGGCC-TAGCCCATATCAGTATCAAT
1 CTGGGCCATAGCCCTATTACA--ATCAGAGTATACTGGGCCTTAGCCCATATCAGTATCAAT
* *
103500443 CTTGGCCATAGCCCTATTACAAGTC-GAGATATATTGGGCCTT-GCCCATATCA
1 CTGGGCCATAGCCCTATTACAA-TCAGAG-TATACTGGGCCTTAGCCCATATCA
103500495 ACACAGTTGG
Statistics
Matches: 98, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
59 5 0.05
60 55 0.56
61 24 0.24
62 14 0.14
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
CTGGGCCATAGCCCTATTACAATCAGAGTATACTGGGCCTTAGCCCATATCAGTATCAAT
Found at i:103500528 original size:19 final size:20
Alignment explanation
Indices: 103500485--103500530 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
103500475 ATTGGGCCTT
103500485 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
103500505 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
103500524 GCCCATA
1 GCCCATA
103500531 ATAAAACAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Done.