Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 310 of 349
Found at i:103504594 original size:19 final size:20
Alignment explanation
Indices: 103504551--103504606 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
103504541 GCTGGGCCTT
103504551 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
103504571 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
* *
103504590 GCCCATAACAAAACAGT
1 GCCCATATCAACACAGT
103504607 CTTATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:103509094 original size:22 final size:22
Alignment explanation
Indices: 103509069--103509113 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
103509059 TCGAGGCTTA
103509069 TATCTTTCTTAAAATATAGTTT
1 TATCTTTCTTAAAATATAGTTT
*
103509091 TATCTTTCTTAAAGTATAGTTT
1 TATCTTTCTTAAAATATAGTTT
103509113 T
1 T
103509114 TTCAAAGTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.07, T:0.56
Consensus pattern (22 bp):
TATCTTTCTTAAAATATAGTTT
Found at i:103512024 original size:40 final size:41
Alignment explanation
Indices: 103511914--103512024 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 41
103511904 CAATTAAACA
* * *
103511914 TTTAGTGGCG-TTTTACAAAAGCGTCGCTAAATCTCAAATT
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATTCTCAAATT
* *
103511954 TTT-GCGGCGTTTTTACAAAAGCGCCACTAATTCTC-TATT
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATTCTCAAATT
*
103511993 TTTAGCGGCGTTTTTACAAAAACGCCGCTAAT
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAAT
103512025 GCCTCTGCAG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 11 0.18
40 51 0.82
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATTCTCAAATT
Found at i:103513373 original size:28 final size:28
Alignment explanation
Indices: 103513316--103513408 Score: 84
Period size: 28 Copynumber: 3.2 Consensus size: 28
103513306 TTTTTTTGGG
*
103513316 GGGTTTAGGGTTTTAGA-GTTTATAGA-TTA
1 GGGTTTAGGG-TTTA-ATGTTTA-AAATTTA
* *
103513345 GTGTTTATGGTTT-ATGTTTTAAAATTTA
1 GGGTTTAGGGTTTAATG-TTTAAAATTTA
*
103513373 GGGTTTAGGGTTTAATGTTTAAGATTTAA
1 GGGTTTAGGGTTTAATGTTTAAAATTT-A
103513402 GGGTTTA
1 GGGTTTA
103513409 CAGAAAGCCA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.02
27 3 0.06
28 30 0.57
29 19 0.36
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (28 bp):
GGGTTTAGGGTTTAATGTTTAAAATTTA
Found at i:103513393 original size:21 final size:21
Alignment explanation
Indices: 103513346--103513408 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
103513336 TATAGATTAG
* * *
103513346 TGTTTATGGTTTATGTTTTAA
1 TGTTTAAGGTTTAGGGTTTAA
** *
103513367 AATTTAGGGTTTAGGGTTTAA
1 TGTTTAAGGTTTAGGGTTTAA
*
103513388 TGTTTAAGATTTAAGGGTTTA
1 TGTTTAAGGTTT-AGGGTTTA
103513409 CAGAAAGCCA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
21 24 0.75
22 8 0.25
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (21 bp):
TGTTTAAGGTTTAGGGTTTAA
Found at i:103513795 original size:41 final size:40
Alignment explanation
Indices: 103513698--103514393 Score: 853
Period size: 41 Copynumber: 17.2 Consensus size: 40
103513688 AACTTTTTGC
*
103513698 GGCGTTTGGACCAAAAACGCCGCTATTGATGAG-TTTTAGT
1 GGCGTTTGGA-CAAAAACGCCGCTATTGATCAGTTTTTAGT
*
103513738 GGCGTTTGGACCAAAAACGCCGCTATTGATCATTTTTTAGT
1 GGCGTTTGGA-CAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
103513779 GGCATTTGAGATAAAAACGCCACTATTGATCAGTTTTTAGT
1 GGCGTTTG-GACAAAAACGCCGCTATTGATCAGTTTTTAGT
* *
103513820 GGCGTTTGGGATAAAAACGCCGCTATTGATAAGTTTTTAGT
1 GGCGTTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* *
103513861 GGCGTTT-GACCAAAAACGCTGCTATTCA-CAAGTTTTTAGT
1 GGCGTTTGGA-CAAAAACGCCGCTATTGATC-AGTTTTTAGT
* * * * *
103513901 GGCGTTTGGGAGAAAAATGACACTATTAATCAGTTTTTAGT
1 GGCGTTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* *
103513942 GGCGCTTGGGCAAAAAACGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGAC-AAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
103513983 GGCGTTTGGACAAAAATGGCGCTATTCATCAGTTTTTAGT
1 GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
*
103514023 GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
103514063 GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
*
103514103 GGCGTTTGGCCAAAAGA-GCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGACAAAA-ACGCCGCTATTGATCAGTTTTTAGT
*
103514143 GGCGTTTGGGATAAAAACGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
103514184 GGCGTTTGGTCAAAAACGCCGCTATTGTTTAGTTTTTAGT
1 GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
103514224 GGCGTTTGGGATAAAAACGCCACTATTGATCAGCTTTTAGT
1 GGCGTTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * * *
103514265 GGCGTTTGGCCAAAAATGCCGCTATTGATAAGCTTGTAGT
1 GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* *
103514305 GGCATTTTGG-CAAAAAACGCCGCTATTGTTCAGTTTTTAGT
1 GGC-GTTTGGAC-AAAAACGCCGCTATTGATCAGTTTTTAGT
* * * * * * *
103514346 GGCTTTTTGGCCAAAAATGCCGTTATTGTTCAGTTTTTTGC
1 GGC-GTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
103514387 GGCGTTT
1 GGCGTTT
103514394 ACTAATGTAT
Statistics
Matches: 573, Mismatches: 67, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.00
40 281 0.49
41 283 0.49
42 7 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (40 bp):
GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
Found at i:103513805 original size:81 final size:81
Alignment explanation
Indices: 103513698--103514393 Score: 902
Period size: 81 Copynumber: 8.6 Consensus size: 81
103513688 AACTTTTTGC
*
103513698 GGCGTTTGGACCAAAAACGCCGCTATTGATGAG-TTTTAGTGGCGTTT-GGACCAAAAACGCCGC
1 GGCGTTTGG-CCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGA-CAAAAACGCCGC
*
103513761 TATTGATCATTTTTTAGT
64 TATTGATCAGTTTTTAGT
* ** * *
103513779 GGCATTTGAGATAAAAACGCCACTATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAACGCCGCT
1 GGCGTTTG-GCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGACAAAAACGCCGCT
*
103513844 ATTGATAAGTTTTTAGT
65 ATTGATCAGTTTTTAGT
* * * * * * *
103513861 GGCGTTTGACCAAAAACGCTGCTATTCA-CAAGTTTTTAGTGGCGTTTGGGAGAAAAATGACACT
1 GGCGTTTGGCCAAAAACGCCGCTATTGATC-AGTTTTTAGTGGCGTTTGGGACAAAAACGCCGCT
*
103513925 ATTAATCAGTTTTTAGT
65 ATTGATCAGTTTTTAGT
* * * *
103513942 GGCGCTTGGGCAAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT-GGACAAAAATGGCGCT
1 GGCG-TTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGACAAAAACGCCGCT
*
103514006 ATTCATCAGTTTTTAGT
65 ATTGATCAGTTTTTAGT
103514023 GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT-GGACAAAAACGCCGCTA
1 GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGACAAAAACGCCGCTA
103514087 TTGATCAGTTTTTAGT
66 TTGATCAGTTTTTAGT
*
103514103 GGCGTTTGGCCAAAAGA-GCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAACGCCGCT
1 GGCGTTTGGCCAAAA-ACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGACAAAAACGCCGCT
103514167 ATTGATCAGTTTTTAGT
65 ATTGATCAGTTTTTAGT
* * * * *
103514184 GGCGTTTGGTCAAAAACGCCGCTATTGTTTAGTTTTTAGTGGCGTTTGGGATAAAAACGCCACTA
1 GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGACAAAAACGCCGCTA
*
103514249 TTGATCAGCTTTTAGT
66 TTGATCAGTTTTTAGT
* * * * * *
103514265 GGCGTTTGGCCAAAAATGCCGCTATTGATAAGCTTGTAGTGGCATTTTGG-CAAAAAACGCCGCT
1 GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGAC-AAAAACGCCGCT
*
103514329 ATTGTTCAGTTTTTAGT
65 ATTGATCAGTTTTTAGT
* * * * * *
103514346 GGCTTTTTGGCCAAAAATGCCGTTATTGTTCAGTTTTTTGCGGCGTTT
1 GGC-GTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT
103514394 ACTAATGTAT
Statistics
Matches: 542, Mismatches: 62, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
80 118 0.22
81 300 0.55
82 120 0.22
83 4 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (81 bp):
GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGACAAAAACGCCGCTA
TTGATCAGTTTTTAGT
Found at i:103515749 original size:12 final size:13
Alignment explanation
Indices: 103515724--103515764 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
103515714 CCAAACCTGA
103515724 TTATATTAATTTT
1 TTATATTAATTTT
103515737 TTATATT-ATTTT
1 TTATATTAATTTT
*
103515749 TTATATAAATATTT
1 TTATATTAAT-TTT
103515763 TT
1 TT
103515765 TAAAAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 11 0.44
13 9 0.36
14 5 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTATATTAATTTT
Found at i:103518240 original size:41 final size:41
Alignment explanation
Indices: 103518183--103518307 Score: 191
Period size: 41 Copynumber: 3.0 Consensus size: 41
103518173 ACATAAAATT
* *
103518183 TGCTAGGC-ATAAAGCCTAGA-ATAATACACCGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCT-GATATAATACACCGGCATAAAGCC
*
103518224 TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCT
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCC
103518265 TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCC
103518306 TG
1 TG
103518308 ATATAATACA
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
40 2 0.03
41 74 0.95
42 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCC
Found at i:103518298 original size:25 final size:25
Alignment explanation
Indices: 103518276--103518332 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
103518266 GCTAGGCAAT
103518276 AAGCCTGATATAATACACCGGCATA
1 AAGCCTGATATAATACACCGGCATA
*
103518301 AAGCCTGATATAATACACCGACATA
1 AAGCCTGATATAATACACCGGCATA
103518326 AAGCCTG
1 AAGCCTG
103518333 CTAGGCAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19
Consensus pattern (25 bp):
AAGCCTGATATAATACACCGGCATA
Found at i:103524714 original size:55 final size:55
Alignment explanation
Indices: 103524620--103524723 Score: 120
Period size: 55 Copynumber: 1.9 Consensus size: 55
103524610 ATGCGACATG
* *
103524620 ACCGTAGGCGAACCTGCCAAAACAACACGGACATACGACATGCCTGTGCTTGGAA
1 ACCGTAGGCGAACCTGCCAAAACAACACGGACATACGACACGCCCGTGCTTGGAA
* ** * * *
103524675 ACCGT-GGCCGAACCTGTCAAATTAACACGGGCGTGCGACACGCCCGTGC
1 ACCGTAGG-CGAACCTGCCAAAACAACACGGACATACGACACGCCCGTGC
103524724 CGAGCAACTG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
54 2 0.05
55 38 0.95
ACGTcount: A:0.28, C:0.32, G:0.26, T:0.14
Consensus pattern (55 bp):
ACCGTAGGCGAACCTGCCAAAACAACACGGACATACGACACGCCCGTGCTTGGAA
Found at i:103533082 original size:20 final size:20
Alignment explanation
Indices: 103533052--103533096 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
103533042 CTGTTTTATT
103533052 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
103533071 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
103533091 ATGGGC
1 ATGGGC
103533097 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:103533236 original size:27 final size:28
Alignment explanation
Indices: 103533184--103533236 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
103533174 GATTGTAATA
* * *
103533184 GGGCTATGGCCTAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAACACTGATAT
103533212 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAACACTGAT
103533237 TTCTGAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAACACTGATAT
Found at i:103535667 original size:5 final size:5
Alignment explanation
Indices: 103535657--103535681 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
103535647 AATTTAAACA
103535657 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
103535682 TATCAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:103536563 original size:17 final size:17
Alignment explanation
Indices: 103536541--103536579 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
103536531 CCTTTAAAAA
*
103536541 TTATATTCGGTTTTCTT
1 TTATATTCAGTTTTCTT
103536558 TTATATTCAGTTTTCTT
1 TTATATTCAGTTTTCTT
103536575 TTATA
1 TTATA
103536580 CTCGAATAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.64
Consensus pattern (17 bp):
TTATATTCAGTTTTCTT
Found at i:103537689 original size:44 final size:45
Alignment explanation
Indices: 103537618--103537880 Score: 200
Period size: 44 Copynumber: 5.9 Consensus size: 45
103537608 AACTTCAGAG
* * *
103537618 AGATAAGATCTACCATCTTCAGTCTGCTTCCTTGCTACCTTAGGA
1 AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAGGA
* *
103537663 AGATAAGA-CTACAATCTTCAACCTGCTCCCTTGCTACCTCAAGG-
1 AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTC-AGGA
** **** ** * * *
103537707 AGATAAGGCCT-GTGGCTAAAATCTGCTCCCCTGCTACCTCGGGA
1 AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAGGA
* ** * * * *
103537751 AGATAAGATCCACCCTCTTCGATTTGC-TCC--ACTACTGCTCAGGG
1 AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTAC--CTCAGGA
*
103537795 AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCGCAGGA
1 AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAGGA
* *
103537840 AGATAAGA-CTACAATCTTCAACCTAC-TCTCTTGCTACCTCA
1 AGATAAGATCTACAATCTTCAATCTGCTTC-CTTGCTACCTCA
103537881 AAGAAATAAG
Statistics
Matches: 167, Mismatches: 41, Indels: 21
0.73 0.18 0.09
Matches are distributed among these distances:
42 4 0.02
43 4 0.02
44 119 0.71
45 36 0.22
47 4 0.02
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.28
Consensus pattern (45 bp):
AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAGGA
Found at i:103537745 original size:88 final size:88
Alignment explanation
Indices: 103537640--103537922 Score: 248
Period size: 88 Copynumber: 3.2 Consensus size: 88
103537630 CCATCTTCAG
* * *
103537640 TCTGCTTCCTTGCTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAA
1 TCTGCTCCCCTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAA
103537705 GGAGATAAGGCCT-GTGGCTAAAA
66 GGAGATAAGG-CTAGTGGCTAAAA
* * ** * ** * *
103537728 TCTGCTCCCCTGCTACCTCGGGAAGATAAGATCCACCCTCTTCGATTTGCTCCAC-TACT-GCTC
1 TCTGCTCCCCTGCTACCTCAGGAAGATAAGA-CTACAATCTTCAACCTGCTCC-CTTGCTACCTC
* * **** **
103537791 AGGGAGATAAGATCTACAATCTTCAA
64 AAGGAGATAAG-GCTAGTGGCTAAAA
* * * * *
103537817 TCTGCTTCCTTGCTACCGCAGGAAGATAAGACTACAATCTTCAACCTACTCTCTTGCTACCTCAA
1 TCTGCTCCCCTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAA
* * *
103537882 AGAAATAAGGCTGGTGGCTAAAA
66 GGAGATAAGGCTAGTGGCTAAAA
*
103537905 TCTGCTCCCCTACTACCT
1 TCTGCTCCCCTGCTACCT
103537923 TGGGAAAATA
Statistics
Matches: 140, Mismatches: 49, Indels: 12
0.70 0.24 0.06
Matches are distributed among these distances:
87 1 0.01
88 78 0.56
89 60 0.43
90 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (88 bp):
TCTGCTCCCCTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAA
GGAGATAAGGCTAGTGGCTAAAA
Found at i:103537823 original size:177 final size:177
Alignment explanation
Indices: 103537612--103537936 Score: 526
Period size: 177 Copynumber: 1.8 Consensus size: 177
103537602 CACTGCAACT
* * **
103537612 TCAGAGAGATAAGATCTACCATCTTCAGTCTGCTTCCTTGCTACCTTAGGAAGATAAGACTACAA
1 TCAGAGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCGCAGGAAGATAAGACTACAA
* * * *
103537677 TCTTCAACCTGCTCCCTTGCTACCTCAAGGAGATAAGGCCT-GTGGCTAAAATCTGCTCCCCTGC
66 TCTTCAACCTACTCCCTTGCTACCTCAAAGAAATAAGG-CTGGTGGCTAAAATCTGCTCCCCTAC
*
103537741 TACCTCGGGAAGATAAGATCCACCCTCTTCGATTTGCTCCACTACTGC
130 TACCTCGGGAAAATAAGATCCACCCTCTTCGATTTGCTCCACTACTGC
*
103537789 TCAGGGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCGCAGGAAGATAAGACTACAA
1 TCAGAGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCGCAGGAAGATAAGACTACAA
*
103537854 TCTTCAACCTACTCTCTTGCTACCTCAAAGAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTACT
66 TCTTCAACCTACTCCCTTGCTACCTCAAAGAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTACT
*
103537919 ACCTTGGGAAAATAAGAT
131 ACCTCGGGAAAATAAGAT
103537937 TTTCCATTTT
Statistics
Matches: 135, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
176 2 0.01
177 133 0.99
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (177 bp):
TCAGAGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCGCAGGAAGATAAGACTACAA
TCTTCAACCTACTCCCTTGCTACCTCAAAGAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTACT
ACCTCGGGAAAATAAGATCCACCCTCTTCGATTTGCTCCACTACTGC
Found at i:103537890 original size:44 final size:45
Alignment explanation
Indices: 103537795--103537890 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 45
103537785 CTGCTCAGGG
* * *
103537795 AGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCGCAGGA
1 AGATAAGATCTACAATCTTCAACCTACTTCCTTGCTACCGCAAGA
*
103537840 AGATAAGA-CTACAATCTTCAACCTAC-TCTCTTGCTACCTCAAAGA
1 AGATAAGATCTACAATCTTCAACCTACTTC-CTTGCTACCGC-AAGA
103537885 A-ATAAG
1 AGATAAG
103537891 GCTGGTGGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
43 2 0.04
44 31 0.69
45 12 0.27
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (45 bp):
AGATAAGATCTACAATCTTCAACCTACTTCCTTGCTACCGCAAGA
Found at i:103537958 original size:177 final size:178
Alignment explanation
Indices: 103537593--103537958 Score: 520
Period size: 177 Copynumber: 2.1 Consensus size: 178
103537583 GACTTGCTTT
* * * *
103537593 GATATGCTCCACTGCAACTTCAGAGAGATAAGATCTACCATCTTCAGTCTGCTTCCTTGCTACCT
1 GATATGCTCCACTACAACTTCAGAGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCG
* * * *
103537658 TAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAAGGAGATAAGGCCTGTGGC
66 CAGGAAGATAAGACTACAATCTTCAACCTACTCCCTTGCTACCTCAAAGAAATAAGGCCTGTGGC
* * *
103537723 TAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATCCACCCTCTTC
131 TAAAATCTGCTCCCCTACTACCTCGGGAAAATAAGATCCACCATCTTC
* ** *
103537771 GATTTGCTCCACTACTGC-TCAGGGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCG
1 GATATGCTCCACTACAACTTCAGAGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCG
*
103537835 CAGGAAGATAAGACTACAATCTTCAACCTACTCTCTTGCTACCTCAAAGAAATAAGG-CTGGTGG
66 CAGGAAGATAAGACTACAATCTTCAACCTACTCCCTTGCTACCTCAAAGAAATAAGGCCT-GTGG
* *** *
103537899 CTAAAATCTGCTCCCCTACTACCTTGGGAAAATAAGATTTTCCATTTTC
130 CTAAAATCTGCTCCCCTACTACCTCGGGAAAATAAGATCCACCATCTTC
103537948 GATATGCTCCA
1 GATATGCTCCA
103537959 TTGCTACCTC
Statistics
Matches: 165, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
176 2 0.01
177 149 0.90
178 14 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (178 bp):
GATATGCTCCACTACAACTTCAGAGAGATAAGATCTACAATCTTCAATCTGCTTCCTTGCTACCG
CAGGAAGATAAGACTACAATCTTCAACCTACTCCCTTGCTACCTCAAAGAAATAAGGCCTGTGGC
TAAAATCTGCTCCCCTACTACCTCGGGAAAATAAGATCCACCATCTTC
Found at i:103539531 original size:348 final size:348
Alignment explanation
Indices: 103538894--103539590 Score: 1376
Period size: 348 Copynumber: 2.0 Consensus size: 348
103538884 TCAAAGATAG
*
103538894 CCAATTTTTTATGAACAAGATGAAGACTAGGTACCCCTGATATCGCAACCTGAGTTTCGCTGTAC
1 CCAATTTATTATGAACAAGATGAAGACTAGGTACCCCTGATATCGCAACCTGAGTTTCGCTGTAC
103538959 GAACTTCTTAAAGACCAATTTAAACTTGACATGTGTTGAGGAGATCAGAAGCACTTTGTCAATGC
66 GAACTTCTTAAAGACCAATTTAAACTTGACATGTGTTGAGGAGATCAGAAGCACTTTGTCAATGC
103539024 CCCAAGATGCAGCATACCCTTTTCCTTGCTAATTCAGGTATAGTAAGATCGCCGCCTTCCCATTT
131 CCCAAGATGCAGCATACCCTTTTCCTTGCTAATTCAGGTATAGTAAGATCGCCGCCTTCCCATTT
103539089 TTGTTCAAAATTTGAGACGCCATTTTCGGGTCTTCAACTCAAATCCCCTTTGGTCTCAAGGCGCC
196 TTGTTCAAAATTTGAGACGCCATTTTCGGGTCTTCAACTCAAATCCCCTTTGGTCTCAAGGCGCC
103539154 CTTTGCGGGTTTTCACCTTGGAATCTCCTTTTTATCTTTTTATTTTCATTTTTTGTTTGGTCTCA
261 CTTTGCGGGTTTTCACCTTGGAATCTCCTTTTTATCTTTTTATTTTCATTTTTTGTTTGGTCTCA
103539219 AAGCGCCCTTTGTGGGTTTTCAC
326 AAGCGCCCTTTGTGGGTTTTCAC
103539242 CCAATTTATTATGAACAAGATGAAGACTAGGTACCCCTGATATCGCAACCTGAGTTTCGCTGTAC
1 CCAATTTATTATGAACAAGATGAAGACTAGGTACCCCTGATATCGCAACCTGAGTTTCGCTGTAC
*
103539307 GAACTTCTTGAAGACCAATTTAAACTTGACATGTGTTGAGGAGATCAGAAGCACTTTGTCAATGC
66 GAACTTCTTAAAGACCAATTTAAACTTGACATGTGTTGAGGAGATCAGAAGCACTTTGTCAATGC
103539372 CCCAAGATGCAGCATACCCTTTTCCTTGCTAATTCAGGTATAGTAAGATCGCCGCCTTCCCATTT
131 CCCAAGATGCAGCATACCCTTTTCCTTGCTAATTCAGGTATAGTAAGATCGCCGCCTTCCCATTT
103539437 TTGTTCAAAATTTGAGACGCCATTTTCGGGTCTTCAACTCAAATCCCCTTTGGTCTCAAGGCGCC
196 TTGTTCAAAATTTGAGACGCCATTTTCGGGTCTTCAACTCAAATCCCCTTTGGTCTCAAGGCGCC
103539502 CTTTGCGGGTTTTCACCTTGGAATCTCCTTTTTATCTTTTTATTTTCATTTTTTGTTTGGTCTCA
261 CTTTGCGGGTTTTCACCTTGGAATCTCCTTTTTATCTTTTTATTTTCATTTTTTGTTTGGTCTCA
103539567 AAGCGCCCTTTGTGGGTTTTCAC
326 AAGCGCCCTTTGTGGGTTTTCAC
103539590 C
1 C
103539591 TTGGGCTATT
Statistics
Matches: 347, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
348 347 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (348 bp):
CCAATTTATTATGAACAAGATGAAGACTAGGTACCCCTGATATCGCAACCTGAGTTTCGCTGTAC
GAACTTCTTAAAGACCAATTTAAACTTGACATGTGTTGAGGAGATCAGAAGCACTTTGTCAATGC
CCCAAGATGCAGCATACCCTTTTCCTTGCTAATTCAGGTATAGTAAGATCGCCGCCTTCCCATTT
TTGTTCAAAATTTGAGACGCCATTTTCGGGTCTTCAACTCAAATCCCCTTTGGTCTCAAGGCGCC
CTTTGCGGGTTTTCACCTTGGAATCTCCTTTTTATCTTTTTATTTTCATTTTTTGTTTGGTCTCA
AAGCGCCCTTTGTGGGTTTTCAC
Found at i:103545853 original size:64 final size:64
Alignment explanation
Indices: 103545773--103545956 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
103545763 AGACATTATG
* * *
103545773 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
103545837 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGAGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
103545902 AA
63 AA
* * * *
103545904 ACTG--GCTAGGTCACATGAGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
103545957 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:103552332 original size:15 final size:15
Alignment explanation
Indices: 103552312--103552343 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
103552302 TAGTTCACTA
*
103552312 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
103552327 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
103552342 TT
1 TT
103552344 TGTATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:103553474 original size:14 final size:14
Alignment explanation
Indices: 103553455--103553481 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
103553445 TAATTTTCTT
103553455 GAAAAATTAATTTA
1 GAAAAATTAATTTA
103553469 GAAAAATTAATTT
1 GAAAAATTAATTT
103553482 TGATCAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (14 bp):
GAAAAATTAATTTA
Found at i:103562804 original size:30 final size:30
Alignment explanation
Indices: 103562770--103562862 Score: 177
Period size: 30 Copynumber: 3.1 Consensus size: 30
103562760 ACTGAACAAG
*
103562770 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
103562800 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
103562830 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
103562860 CAA
1 CAA
103562863 TAAAATAAGT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAACAAAATTAA
Found at i:103566549 original size:27 final size:27
Alignment explanation
Indices: 103566518--103566613 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
103566508 AGCATGGCTG
* ** *
103566518 CCAGATACAGATAATGTGACAGAGTCA
1 CCAGATACAAATAATGTGGTAGAGCCA
*
103566545 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGATACAAATAAT-GTGGTAGAGCCA
103566573 CCAGA-ACAAATATATGTGGTAGAGCCA
1 CCAGATACAAATA-ATGTGGTAGAGCCA
103566600 CCAGAT-CAAATAAT
1 CCAGATACAAATAAT
103566614 CATGGCATAG
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.03
27 44 0.71
28 16 0.26
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.19
Consensus pattern (27 bp):
CCAGATACAAATAATGTGGTAGAGCCA
Found at i:103573412 original size:114 final size:114
Alignment explanation
Indices: 103573202--103573537 Score: 638
Period size: 114 Copynumber: 2.9 Consensus size: 114
103573192 GAGGTGAGGT
103573202 GAGGTGAAGTCCAAATTCCTCCTCCGCTGGGCTGAATATATATAGAAAAAAAAAAAAAGAGGGTT
1 GAGGTGAAGTCCAAATTCCTCCTCCGCTGGGCTGAATATATATAG---AAAAAAAAAAGAGGGTT
103573267 TCATGGTAAAATTTTGGTATCAGTCCTTATAATTTAGTACTTTATGATACAG
63 TCATGGTAAAATTTTGGTATCAGTCCTTATAATTTAGTACTTTATGATACAG
103573319 GAGGTGAAGTCCAAATTCCTCCTCCGCTGGGCTGAATATATATAGAAAAAAAAAAGAGGGTTTCA
1 GAGGTGAAGTCCAAATTCCTCCTCCGCTGGGCTGAATATATATAGAAAAAAAAAAGAGGGTTTCA
103573384 TGGTAAAATTTTGGTATCAGTCCTTATAATTTAGTACTTTATGATACAG
66 TGGTAAAATTTTGGTATCAGTCCTTATAATTTAGTACTTTATGATACAG
103573433 GAGGTGAAGTCCAAATTCCTCCTCCGCTGGGCTGAATATATATAG-AAAAAAAAAGAGGGTTTCA
1 GAGGTGAAGTCCAAATTCCTCCTCCGCTGGGCTGAATATATATAGAAAAAAAAAAGAGGGTTTCA
103573497 TGGTAAAATTTTGGTATCAGTCCTTATAATTTAGTACTTTA
66 TGGTAAAATTTTGGTATCAGTCCTTATAATTTAGTACTTTA
103573538 CTTCATTTAT
Statistics
Matches: 219, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
113 60 0.27
114 114 0.52
117 45 0.21
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (114 bp):
GAGGTGAAGTCCAAATTCCTCCTCCGCTGGGCTGAATATATATAGAAAAAAAAAAGAGGGTTTCA
TGGTAAAATTTTGGTATCAGTCCTTATAATTTAGTACTTTATGATACAG
Found at i:103575417 original size:9 final size:9
Alignment explanation
Indices: 103575403--103575429 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
103575393 GAATTTTTAT
103575403 AAAAAATTA
1 AAAAAATTA
103575412 AAAAAATTA
1 AAAAAATTA
103575421 AAAAAATTA
1 AAAAAATTA
103575430 TTTATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAAAATTA
Found at i:103576671 original size:26 final size:28
Alignment explanation
Indices: 103576642--103576694 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
103576632 ATTTTTAATT
* *
103576642 TATTTTAAACTTATT-TT-GTTAGTAAC
1 TATTATAAACTAATTGTTAGTTAGTAAC
103576668 TATTATAAACTAATTGTTAGTTAGTAA
1 TATTATAAACTAATTGTTAGTTAGTAA
103576695 TGACACCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 13 0.57
27 2 0.09
28 8 0.35
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.49
Consensus pattern (28 bp):
TATTATAAACTAATTGTTAGTTAGTAAC
Found at i:103577290 original size:7 final size:7
Alignment explanation
Indices: 103577278--103577313 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
103577268 GAATTTGAAA
103577278 AGAATTT
1 AGAATTT
103577285 AGAATTT
1 AGAATTT
103577292 AGAATTT
1 AGAATTT
103577299 AGAATTT
1 AGAATTT
103577306 AGAATTT
1 AGAATTT
103577313 A
1 A
103577314 ATATAGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (7 bp):
AGAATTT
Found at i:103577326 original size:21 final size:20
Alignment explanation
Indices: 103577278--103577321 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
103577268 GAATTTGAAA
*
103577278 AGAATTTAGAATTTAGAATTT
1 AGAATTTAGAATTTA-AATAT
103577299 AGAATTTAGAATTT-AATAT
1 AGAATTTAGAATTTAAATAT
103577318 AGAA
1 AGAA
103577322 AATTTCTCGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.36
21 14 0.64
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
AGAATTTAGAATTTAAATAT
Found at i:103580377 original size:48 final size:48
Alignment explanation
Indices: 103580314--103580532 Score: 220
Period size: 48 Copynumber: 4.6 Consensus size: 48
103580304 TAATGTACTC
* * **
103580314 CAATGTATCTAATTTATATTACAAAGTTTGTTCTGTGTTTTAATGTTG
1 CAATGAATCTAATTTAAATTACAAAGTTTGTTCTAAGTTTTAATGTTG
* * *
103580362 CAATTAATCTAATTTAAATTACAAATTTTGTTCCAAGTTTTAATGTTG
1 CAATGAATCTAATTTAAATTACAAAGTTTGTTCTAAGTTTTAATGTTG
* **
103580410 CAATGAATCTCAA-TTAAATTACAAAG-TTATTCTGCGTTTTAATGTTG
1 CAATGAATCT-AATTTAAATTACAAAGTTTGTTCTAAGTTTTAATGTTG
*
103580457 CAATGAATCTCAA-TTAAATAAATACAAAATTT-TTCTAAAG--TT--TGTTG
1 CAATGAATCT-AATTTAAAT---TACAAAGTTTGTTCT-AAGTTTTAATGTTG
*
103580504 CAATTAATCTAATTTAAATTACAAAGTTT
1 CAATGAATCTAATTTAAATTACAAAGTTT
103580533 ATAATTTTGC
Statistics
Matches: 146, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
44 9 0.06
46 2 0.01
47 56 0.38
48 62 0.42
49 4 0.03
50 10 0.07
51 3 0.02
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (48 bp):
CAATGAATCTAATTTAAATTACAAAGTTTGTTCTAAGTTTTAATGTTG
Found at i:103584974 original size:18 final size:17
Alignment explanation
Indices: 103584941--103584979 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
103584931 TTGTATAAAT
103584941 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
103584959 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
103584976 TGTG
1 TGTG
103584980 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:103585232 original size:23 final size:23
Alignment explanation
Indices: 103585205--103585302 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
103585195 AGTGTTATTG
103585205 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
103585228 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
103585251 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
103585273 ATCAGTGGTAGCTTCCGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
103585296 ATCAGTG
1 ATCAGTG
103585303 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.29
23 48 0.71
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:103585271 original size:45 final size:45
Alignment explanation
Indices: 103585207--103585295 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
103585197 TGTTATTGAT
* **
103585207 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCCGCTACATC
103585252 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCCGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCCGCTACAT
103585296 ATCAGTGTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCCGCTACATC
Found at i:103589497 original size:7 final size:7
Alignment explanation
Indices: 103589487--103589520 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
103589477 ATTTTAAGGT
103589487 TTATGGA
1 TTATGGA
103589494 TTATGGA
1 TTATGGA
103589501 TTATGGA
1 TTATGGA
*
103589508 CTTAGGGA
1 -TTATGGA
103589516 TTATG
1 TTATG
103589521 ATTTATGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (7 bp):
TTATGGA
Found at i:103589518 original size:15 final size:14
Alignment explanation
Indices: 103589487--103589520 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
103589477 ATTTTAAGGT
*
103589487 TTATGGATTATGGA
1 TTATGGATTAGGGA
103589501 TTATGGACTTAGGGA
1 TTATGGA-TTAGGGA
103589516 TTATG
1 TTATG
103589521 ATTTATGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (14 bp):
TTATGGATTAGGGA
Found at i:103589593 original size:22 final size:22
Alignment explanation
Indices: 103589570--103589631 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
103589560 AATAATTTAG
103589570 GGGT-TAAGAGTTAAGGGTTAA
1 GGGTATAAGAGTTAAGGGTTAA
* * *
103589591 GGGTCTAGGAGTTAAAGGTTAA
1 GGGTATAAGAGTTAAGGGTTAA
*
103589613 GGGTATAAG-GTTTAGGGTT
1 GGGTATAAGAGTTAAGGGTT
103589632 TAAAATTTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 12 0.35
22 22 0.65
ACGTcount: A:0.29, C:0.02, G:0.39, T:0.31
Consensus pattern (22 bp):
GGGTATAAGAGTTAAGGGTTAA
Found at i:103589599 original size:29 final size:29
Alignment explanation
Indices: 103589565--103589693 Score: 102
Period size: 29 Copynumber: 4.4 Consensus size: 29
103589555 GGGTTAATAA
103589565 TTTAGGGGTTAAGAGTTAAGGGTTAAGGG
1 TTTAGGGGTTAAGAGTTAAGGGTTAAGGG
* *
103589594 TCTAGGAGTTAA-AGGTTAAGGGTATAA-GG
1 TTTAGGGGTTAAGA-GTTAAGGGT-TAAGGG
* * * *
103589623 TTTAGGGTTTAA-AATTTAGTGGTTAAGGA
1 TTTAGGGGTTAAGAGTTAAG-GGTTAAGGG
* * * * *
103589652 TTTAAGGTTTATGAGTTAAAGGTTAGGGG
1 TTTAGGGGTTAAGAGTTAAGGGTTAAGGG
*
103589681 TTTATGGGTTAAG
1 TTTAGGGGTTAAG
103589694 GCATTAAGAG
Statistics
Matches: 77, Mismatches: 18, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
28 8 0.10
29 62 0.81
30 7 0.09
ACGTcount: A:0.29, C:0.01, G:0.34, T:0.36
Consensus pattern (29 bp):
TTTAGGGGTTAAGAGTTAAGGGTTAAGGG
Found at i:103590175 original size:14 final size:14
Alignment explanation
Indices: 103590153--103590185 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
103590143 CACCTCACCA
103590153 CCACCTCCACCGAT
1 CCACCTCCACCGAT
*
103590167 CCACTTCCACCGAT
1 CCACCTCCACCGAT
103590181 CCACC
1 CCACC
103590186 CAAATCCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.21, C:0.58, G:0.06, T:0.15
Consensus pattern (14 bp):
CCACCTCCACCGAT
Found at i:103591459 original size:18 final size:17
Alignment explanation
Indices: 103591422--103591456 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
103591412 TATATAAGTG
103591422 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
103591439 ATTG-TTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
103591455 AT
1 AT
103591457 ATTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:103594475 original size:15 final size:15
Alignment explanation
Indices: 103594443--103594484 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
103594433 ATTTAAAGTT
*
103594443 TTATTTTGA-TTATG
1 TTATTTTAATTTATG
* *
103594457 TTATTTTATTTTATT
1 TTATTTTAATTTATG
103594472 TTATTTTAATTTA
1 TTATTTTAATTTA
103594485 AGCACGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (15 bp):
TTATTTTAATTTATG
Found at i:103594576 original size:100 final size:100
Alignment explanation
Indices: 103594468--103594756 Score: 472
Period size: 100 Copynumber: 2.8 Consensus size: 100
103594458 TATTTTATTT
103594468 TATTTTATTTTAATTTAAGCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
1 TATTTTATTTTAATTTAAGCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
103594533 ATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
66 ATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
* * * *
103594568 TATTTTATTTTATTTTAATCAAGAAAAATATTTTGTCTATTTTTATTTTATTTTTAAATTACCTA
1 TATTTTATTTTAATTTAAGCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
103594633 ATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
66 ATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
103594668 TATTTTATTTTATTTTATTTTAAGCAC-AAAAAGTATTTTGTCTACTTTTATTTTATTTTTAAAT
1 TATTTTATTTTA----A-TTTAAGCACGAAAAA-TATTTTGTCTACTTTTATTTTATTTTTAAAT
*
103594732 TACCTAATTAAGTTAAATTGTATTT
60 TACCTAATTAAATTAAATTGTATTT
103594757 TTAAATATTG
Statistics
Matches: 174, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
100 108 0.62
104 5 0.03
105 61 0.35
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.55
Consensus pattern (100 bp):
TATTTTATTTTAATTTAAGCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
ATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
Found at i:103600094 original size:13 final size:14
Alignment explanation
Indices: 103600078--103600106 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
103600068 TTATAAATAT
103600078 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
103600091 TTATAATGGTTTAA
1 TTATAATGGTTTAA
103600105 TT
1 TT
103600107 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:103601068 original size:19 final size:20
Alignment explanation
Indices: 103601044--103601082 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
103601034 CGTTTTTTGT
*
103601044 GGCTAAAAGA-GCCGCTAAA
1 GGCTAAAAAATGCCGCTAAA
103601063 GGCTAAAAAATGCCGCTAAA
1 GGCTAAAAAATGCCGCTAAA
103601083 AGTCTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.13
Consensus pattern (20 bp):
GGCTAAAAAATGCCGCTAAA
Found at i:103601285 original size:103 final size:102
Alignment explanation
Indices: 103601160--103601486 Score: 349
Period size: 106 Copynumber: 3.1 Consensus size: 102
103601150 ATTTAACTAA
* * *
103601160 ACAAATAATTTATAACATAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTTAAAAAAT
1 ACAAACAATTAATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTTAAAAAAT
* * **
103601225 TATATTCATAAAAATTCACAATAAATACTAAACTAAAC
66 AAAATAAAT-AAAATTCACAATAAATACTAAACTAAAC
*
103601263 ACAAACAATTAATAACCTAATCATAAATTACTAACAAAATAATAACTTTAAAATAA--TTAAAAA
1 ACAAACAATTAATAACCTAATCATAAATTACTAAC--AA-AATAACTTTAAAATAATTTTTAAAA
* * * *
103601326 AATAAAAAAAATTAAATTTATTAA-AAATCACACTAAACTAAAC
63 AATAAAATAAATAAAATTCA-CAATAAAT---ACTAAACTAAAC
* * *
103601369 ACAAACAGTTTAA-CACCTAATCATAAATTACTAACAAAATAACTTTAAAATTATTTTTAAAAAA
1 ACAAACA-ATTAATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTTAAAAAA
*
103601433 TAAAATAAAATTTAAAA-TCACAATAAACACTAAACTAAAC
65 TAAAAT-AAA--TAAAATTCACAATAAATACTAAACTAAAC
*
103601473 ACAAATAATATAAT
1 ACAAACAAT-TAAT
103601487 TATAAACCAA
Statistics
Matches: 185, Mismatches: 23, Indels: 30
0.78 0.10 0.13
Matches are distributed among these distances:
103 58 0.31
104 38 0.21
105 15 0.08
106 61 0.33
107 9 0.05
108 4 0.02
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (102 bp):
ACAAACAATTAATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTTAAAAAAT
AAAATAAATAAAATTCACAATAAATACTAAACTAAAC
Found at i:103601579 original size:28 final size:26
Alignment explanation
Indices: 103601526--103601586 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 26
103601516 AAAACAACAT
**
103601526 AAAAAAA-ACTAATCCCTTCTATTTA
1 AAAAAAATACTAATCCCTTAAATTTA
103601551 AAAAAAATACTAATCCCTTAAAATTTTA
1 AAAAAAATACTAATCCCTT-AAA-TTTA
103601579 AAAAAAAT
1 AAAAAAAT
103601587 TACAAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 7 0.23
26 11 0.35
27 1 0.03
28 12 0.39
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (26 bp):
AAAAAAATACTAATCCCTTAAATTTA
Found at i:103601581 original size:26 final size:26
Alignment explanation
Indices: 103601524--103601585 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
103601514 TAAAAACAAC
**
103601524 ATAAAAAAAACTAATCCCTTCTATTT
1 ATAAAAAAAACTAATCCCTTAAATTT
103601550 A-AAAAAAATACTAATCCCTTAAAATTT
1 ATAAAAAAA-ACTAATCCCTT-AAATTT
103601577 -TAAAAAAAA
1 ATAAAAAAAA
103601586 TTACAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 7 0.23
26 13 0.42
27 11 0.35
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (26 bp):
ATAAAAAAAACTAATCCCTTAAATTT
Found at i:103603413 original size:18 final size:17
Alignment explanation
Indices: 103603379--103603417 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
103603369 CTTGAGGACT
*
103603379 AAATTTAAAATATTTTA
1 AAATTTAAAATAATTTA
*
103603396 AAATTTTAAATAAATTTA
1 AAATTTAAAAT-AATTTA
103603414 AAAT
1 AAAT
103603418 ATGAATCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATTTAAAATAATTTA
Found at i:103608952 original size:7 final size:7
Alignment explanation
Indices: 103608940--103608964 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
103608930 ATTTCACTAT
103608940 ATTTAAC
1 ATTTAAC
103608947 ATTTAAC
1 ATTTAAC
103608954 ATTTAAC
1 ATTTAAC
103608961 ATTT
1 ATTT
103608965 TATTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (7 bp):
ATTTAAC
Found at i:103610185 original size:9 final size:9
Alignment explanation
Indices: 103610163--103610220 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
103610153 TTTTACAAAA
103610163 TTTATATTT
1 TTTATATTT
*
103610172 CTTTACATTT
1 -TTTATATTT
*
103610182 TTTATTTTT
1 TTTATATTT
103610191 TTTATA-TT
1 TTTATATTT
* *
103610199 TCTATATAT
1 TTTATATTT
103610208 TTTATATTT
1 TTTATATTT
103610217 TTTA
1 TTTA
103610221 CGATTTTTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
8 7 0.18
9 24 0.62
10 8 0.21
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTATATTT
Found at i:103610194 original size:28 final size:28
Alignment explanation
Indices: 103610163--103610219 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
103610153 TTTTACAAAA
* *
103610163 TTTATATTTCTTTACATTTTTTATTTTT
1 TTTATATTTCTATACATTTTATATTTTT
*
103610191 TTTATATTTCTATATATTTTATATTTTT
1 TTTATATTTCTATACATTTTATATTTTT
103610219 T
1 T
103610220 ACGATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTATATTTCTATACATTTTATATTTTT
Found at i:103610279 original size:28 final size:28
Alignment explanation
Indices: 103610178--103610279 Score: 84
Period size: 28 Copynumber: 3.6 Consensus size: 28
103610168 ATTTCTTTAC
* * *
103610178 ATTTTTTATTTTTTTTAT-ATTTCTATAT
1 ATTTTATATTTTTATTATGATTTTTA-AT
* *
103610206 ATTTTATA-TTTT-TTACGATTTTTATAAA
1 ATTTTATATTTTTATTATGA-TTTT-TAAT
* *
103610234 ATTTTACAAATTTTATTATGATTTTTAAT
1 ATTTTA-TATTTTTATTATGATTTTTAAT
103610263 ATTTTATATTTTTATTA
1 ATTTTATATTTTTATTA
103610280 AAATTTAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
26 3 0.05
27 5 0.08
28 26 0.44
29 12 0.20
30 8 0.14
31 5 0.08
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (28 bp):
ATTTTATATTTTTATTATGATTTTTAAT
Found at i:103610285 original size:19 final size:20
Alignment explanation
Indices: 103610254--103610297 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
103610244 TTTTATTATG
* *
103610254 ATTT-TTAATATTTTATATT
1 ATTTATTAAAATTTAATATT
103610273 -TTTATTAAAATTTAATATT
1 ATTTATTAAAATTTAATATT
103610292 ATTTAT
1 ATTTAT
103610298 AGATTTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 3 0.14
19 13 0.62
20 5 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTATTAAAATTTAATATT
Found at i:103610452 original size:92 final size:91
Alignment explanation
Indices: 103610356--103610527 Score: 211
Period size: 92 Copynumber: 1.9 Consensus size: 91
103610346 TAAAAGCAGT
* * * * * * *
103610356 GGCTTAATTGCTTTTTTTGAAACAGTGGGAGAG-TATTTTTTATGCATTTTGAAAGTTTAAGTAC
1 GGCTTAAATACTTTTTTTGAAAAACTGGGAGAGCT-TTTTTGATGCATTTTGAAAGTTAAAATAC
*
103610420 CCAATTGAGTGCAAAAAAAAAGAGTAAG
65 CCAAATGAGTG-AAAAAAAAAGAGTAAG
** * *
103610448 GGCTTAAATACTTTTTTTGAAAAACTTTGAGGGCTTTTTTGATGTATTTTGAAAGTTAAAATACC
1 GGCTTAAATACTTTTTTTGAAAAACTGGGAGAGCTTTTTTGATGCATTTTGAAAGTTAAAATACC
103610513 CAAATGAGTGAAAAA
66 CAAATGAGTGAAAAA
103610528 GAGAGGAGGA
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
91 5 0.07
92 61 0.91
93 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (91 bp):
GGCTTAAATACTTTTTTTGAAAAACTGGGAGAGCTTTTTTGATGCATTTTGAAAGTTAAAATACC
CAAATGAGTGAAAAAAAAAGAGTAAG
Found at i:103611604 original size:74 final size:74
Alignment explanation
Indices: 103611483--103611631 Score: 298
Period size: 74 Copynumber: 2.0 Consensus size: 74
103611473 CTTCAATACA
103611483 ATCCAAATCCACCCCATTCTTTAATATTATATCAATATTCTGACCTCACCCTTCTCTCCGTCTCC
1 ATCCAAATCCACCCCATTCTTTAATATTATATCAATATTCTGACCTCACCCTTCTCTCCGTCTCC
103611548 TATAAATAT
66 TATAAATAT
103611557 ATCCAAATCCACCCCATTCTTTAATATTATATCAATATTCTGACCTCACCCTTCTCTCCGTCTCC
1 ATCCAAATCCACCCCATTCTTTAATATTATATCAATATTCTGACCTCACCCTTCTCTCCGTCTCC
103611622 TATAAATAT
66 TATAAATAT
103611631 A
1 A
103611632 CACCAACACC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.29, C:0.32, G:0.03, T:0.36
Consensus pattern (74 bp):
ATCCAAATCCACCCCATTCTTTAATATTATATCAATATTCTGACCTCACCCTTCTCTCCGTCTCC
TATAAATAT
Found at i:103611607 original size:37 final size:37
Alignment explanation
Indices: 103611492--103611607 Score: 94
Period size: 36 Copynumber: 3.1 Consensus size: 37
103611482 AATCCAAATC
103611492 CACCCCATTCTTTAATATTATATCAATATTCTGACCT
1 CACCCCATTCTTTAATATTATATCAATATTCTGACCT
*** * ** * * **
103611529 CA-CCC-TTCTCTCCGTCTCCTATAAATATATC-CAAAT
1 CACCCCATTCT-TTAATATTATATCAATAT-TCTGACCT
103611565 CCACCCCATTCTTTAATATTATATCAATATTCTGACCT
1 -CACCCCATTCTTTAATATTATATCAATATTCTGACCT
103611603 CACCC
1 CACCC
103611608 TTCTCTCCGT
Statistics
Matches: 53, Mismatches: 20, Indels: 12
0.62 0.24 0.14
Matches are distributed among these distances:
35 4 0.08
36 16 0.30
37 13 0.25
38 16 0.30
39 4 0.08
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (37 bp):
CACCCCATTCTTTAATATTATATCAATATTCTGACCT
Found at i:103611630 original size:36 final size:36
Alignment explanation
Indices: 103611516--103611630 Score: 90
Period size: 36 Copynumber: 3.1 Consensus size: 36
103611506 ATATTATATC
103611516 AATATTCTGACCTCACCCTTCTCTCCGTCTCCTATA
1 AATATTCTGACCTCACCCTTCTCTCCGTCTCCTATA
* ** *** * ** *
103611552 AATATATC-CAAATCCACCCCATTCT-TTAATATTATATC
1 AATAT-TCTGACCT-CA-CCC-TTCTCTCCGTCTCCTATA
103611590 AATATTCTGACCTCACCCTTCTCTCCGTCTCCTATA
1 AATATTCTGACCTCACCCTTCTCTCCGTCTCCTATA
103611626 AATAT
1 AATAT
103611631 ACACCAACAC
Statistics
Matches: 53, Mismatches: 20, Indels: 12
0.62 0.24 0.14
Matches are distributed among these distances:
35 4 0.08
36 21 0.40
37 8 0.15
38 16 0.30
39 4 0.08
ACGTcount: A:0.27, C:0.33, G:0.03, T:0.37
Consensus pattern (36 bp):
AATATTCTGACCTCACCCTTCTCTCCGTCTCCTATA
Found at i:103617514 original size:20 final size:20
Alignment explanation
Indices: 103617489--103617531 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
103617479 TTAAAGAATG
103617489 TTGGAAATTCTGTTTTTAAA
1 TTGGAAATTCTGTTTTTAAA
*
103617509 TTGGAAATTCTGTTTTTGAA
1 TTGGAAATTCTGTTTTTAAA
103617529 TTG
1 TTG
103617532 TTACAATGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.51
Consensus pattern (20 bp):
TTGGAAATTCTGTTTTTAAA
Found at i:103619536 original size:23 final size:23
Alignment explanation
Indices: 103619497--103619634 Score: 88
Period size: 23 Copynumber: 6.0 Consensus size: 23
103619487 GACTCACCGT
* *
103619497 AGCTTGTATGAGCTTACTGATTC
1 AGCTCGTAAGAGCTTACTGATTC
* *
103619520 AACTCGTAAGAGCTTACTGTTTC
1 AGCTCGTAAGAGCTTACTGATTC
* ** *
103619543 AGCTCATTGGAGCTTATTGATTC
1 AGCTCGTAAGAGCTTACTGATTC
*
103619566 AGTTCG-ATAGAGCTTACTG-TTC
1 AGCTCGTA-AGAGCTTACTGATTC
* * * *
103619588 AGCTC-AATAGAGCTTACCGTTTTT
1 AGCTCGTA-AGAGCTTACTG-ATTC
103619612 AGCTCAGTAA-AGCTTACT-ATTC
1 AGCTC-GTAAGAGCTTACTGATTC
103619634 A
1 A
103619635 TCAGCTCAGG
Statistics
Matches: 87, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
22 22 0.25
23 49 0.56
24 14 0.16
25 1 0.01
26 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (23 bp):
AGCTCGTAAGAGCTTACTGATTC
Found at i:103619578 original size:46 final size:45
Alignment explanation
Indices: 103619506--103619604 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 45
103619496 TAGCTTGTAT
* *
103619506 GAGCTTACTGATTCAACTCGTAAGAGCTTACTGTTTCAGCTCATTG
1 GAGCTTACTGATTCAACTCGTAAGAGCTTACTG-TTCAGCTCAATA
* **
103619552 GAGCTTATTGATTCAGTTCG-ATAGAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGATTCAACTCGTA-AGAGCTTACTGTTCAGCTCAATA
103619597 GAGCTTAC
1 GAGCTTAC
103619605 CGTTTTTAGC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 18 0.39
46 28 0.61
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (45 bp):
GAGCTTACTGATTCAACTCGTAAGAGCTTACTGTTCAGCTCAATA
Found at i:103619597 original size:22 final size:23
Alignment explanation
Indices: 103619506--103619604 Score: 103
Period size: 23 Copynumber: 4.3 Consensus size: 23
103619496 TAGCTTGTAT
* *
103619506 GAGCTTACTGATTCAACTC-GTAA
1 GAGCTTACTGATTCAGCTCAAT-A
* * *
103619529 GAGCTTACTGTTTCAGCTCATTG
1 GAGCTTACTGATTCAGCTCAATA
* * *
103619552 GAGCTTATTGATTCAGTTCGATA
1 GAGCTTACTGATTCAGCTCAATA
103619575 GAGCTTACTG-TTCAGCTCAATA
1 GAGCTTACTGATTCAGCTCAATA
103619597 GAGCTTAC
1 GAGCTTAC
103619605 CGTTTTTAGC
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
22 18 0.29
23 43 0.69
24 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTCAATA
Found at i:103621375 original size:19 final size:21
Alignment explanation
Indices: 103621351--103621396 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 21
103621341 TTCTCATTTT
*
103621351 TAAAATTTTTAAAAAAC-A-A
1 TAAAATTTTAAAAAAACTATA
103621370 TAAAA-TTTAAAAAAACTATA
1 TAAAATTTTAAAAAAACTATA
103621390 TAAAATT
1 TAAAATT
103621397 CTTATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 10 0.43
19 6 0.26
20 6 0.26
21 1 0.04
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
TAAAATTTTAAAAAAACTATA
Found at i:103621857 original size:10 final size:10
Alignment explanation
Indices: 103621842--103621866 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
103621832 CAAATTAGAT
103621842 TATAAAAAAA
1 TATAAAAAAA
103621852 TATAAAAAAA
1 TATAAAAAAA
103621862 TATAA
1 TATAA
103621867 TAACTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
TATAAAAAAA
Found at i:103625352 original size:43 final size:43
Alignment explanation
Indices: 103625289--103625452 Score: 197
Period size: 43 Copynumber: 3.8 Consensus size: 43
103625279 AGCTCATACA
* * * *
103625289 ATGCC-ATATCCCAGATATGGTCTAACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * *
103625331 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * *
103625374 ATACCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
* *
103625417 AAGCCAATGTCTCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
103625453 TATCTCGGTA
Statistics
Matches: 103, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
42 6 0.06
43 97 0.94
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:103625424 original size:86 final size:86
Alignment explanation
Indices: 103625297--103625455 Score: 230
Period size: 86 Copynumber: 1.8 Consensus size: 86
103625287 CAATGCCATA
* * * * *
103625297 TCCCAGATATGGTCTAACATGTTATCACATATCGATGCCAATGTCCCAGACATGGTCTTACATGA
1 TCCCAGACATGGTCTAACACGTAATCACATATCAAAGCCAATGTCCCAGACATGGTCTTACATGA
103625362 AATCATATAACGATACCAATG
66 AATCATATAACGATACCAATG
* *
103625383 TCCCAGACATGGTCTTACACGTAATCACA-ATACAAAGCCAATGTCTCAGACATGGTCTTACATG
1 TCCCAGACATGGTCTAACACGTAATCACATAT-CAAAGCCAATGTCCCAGACATGGTCTTACATG
*
103625447 TAATCATAT
65 AAATCATAT
103625456 CTCGGTAATC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 2 0.03
86 62 0.97
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (86 bp):
TCCCAGACATGGTCTAACACGTAATCACATATCAAAGCCAATGTCCCAGACATGGTCTTACATGA
AATCATATAACGATACCAATG
Found at i:103628959 original size:23 final size:23
Alignment explanation
Indices: 103628927--103628972 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
103628917 AAGAAAACCC
*
103628927 ATAATGACCTTTCCTAGTGGCCT
1 ATAATAACCTTTCCTAGTGGCCT
*
103628950 ATAATAACCTTTCCTGGTGGCCT
1 ATAATAACCTTTCCTAGTGGCCT
103628973 TGTTTAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (23 bp):
ATAATAACCTTTCCTAGTGGCCT
Found at i:103632995 original size:22 final size:21
Alignment explanation
Indices: 103632943--103632985 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
103632933 AAATTTGTTG
*
103632943 AAAATAATTAAAATTTATTAT
1 AAAATAATTAAAATTCATTAT
103632964 AAAATTAATTAAAATTCATTAT
1 AAAA-TAATTAAAATTCATTAT
103632986 GTTAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAATAATTAAAATTCATTAT
Found at i:103639601 original size:14 final size:16
Alignment explanation
Indices: 103639570--103639614 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
103639560 GTTATAAATT
* *
103639570 TAATTATGTTAAATTA
1 TAATTATATTATATTA
103639586 TAA-TA-ATTATATTA
1 TAATTATATTATATTA
103639600 TAATTATATTATATT
1 TAATTATATTATATT
103639615 TATTATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 10 0.40
15 4 0.16
16 11 0.44
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TAATTATATTATATTA
Found at i:103639620 original size:9 final size:11
Alignment explanation
Indices: 103639570--103639620 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 11
103639560 GTTATAAATT
*
103639570 TAATTATGTTA
1 TAATTATATTA
103639581 -AATTATA--A
1 TAATTATATTA
103639589 TAATTATATTA
1 TAATTATATTA
103639600 TAATTATATTA
1 TAATTATATTA
103639611 T-ATT-TATTA
1 TAATTATATTA
103639620 T
1 T
103639621 GAAATAAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 1 0.03
9 13 0.36
10 9 0.25
11 13 0.36
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (11 bp):
TAATTATATTA
Found at i:103640039 original size:3 final size:3
Alignment explanation
Indices: 103640031--103640075 Score: 56
Period size: 3 Copynumber: 15.0 Consensus size: 3
103640021 AAATAGATAT
* *
103640031 TTA TTA TTA -TA TTA TTA TAA TGTA TTA TTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
103640076 ACTAACATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.06
3 32 0.89
4 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:103640639 original size:16 final size:17
Alignment explanation
Indices: 103640618--103640650 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
103640608 TAAATGAGTT
103640618 AATTAGGAT-TAAATTG
1 AATTAGGATATAAATTG
*
103640634 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
103640651 GATAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (17 bp):
AATTAGGATATAAATTG
Found at i:103644384 original size:43 final size:43
Alignment explanation
Indices: 103644218--103644384 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
103644208 CATAAGCTCG
* * * * *
103644218 TACAATGCC-ATATCCCAGAGATGGTCTTACATGTTAT-TCCA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* * * * *
103644259 TATCGATGCCACTGTCCCAGACA-GAGTCTTACACGAAATC-GAT
1 TA-CAATGCCAATGTCCCAGACATG-GTCTTACACGTAATCTCAA
* * * *
103644302 TAACGATGCCAATGTTCCAGACATGATCTTACACATAATCTCAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* *
103644346 TACAATGCCAATGTCCTAGACATGGTCTTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
103644385 ACATCTTGGT
Statistics
Matches: 96, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 83 0.86
44 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
Found at i:103653106 original size:38 final size:40
Alignment explanation
Indices: 103653063--103653300 Score: 138
Period size: 49 Copynumber: 5.2 Consensus size: 40
103653053 TTCACATTCA
103653063 TCACAT-C-GGCCATTAGGCCTTATCACATATATACACTT
1 TCACATACTGGCCATTAGGCCTTATCACATATATACACTT
*
103653101 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 T--CA--CAT-AC--TGGCCATTAGGCCTTATCACATATATACACTT
103653148 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 T--CA--CAT-AC-T-GGCCATTAGGCCTTATCAC--ATATATACACTT
*
103653197 TCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATATACACTT
1 T--CA--CAT-AC-T-GGCCATTAGGCCTTATCAC--ATATATACACTT
103653246 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTT
1 T--CA--CAT-AC-T-GGCCATTAGGCCTTATCACATATAT--ACACTT
103653295 TCACAT
1 TCACAT
103653301 TCATCACGTT
Statistics
Matches: 181, Mismatches: 5, Indels: 21
0.87 0.02 0.10
Matches are distributed among these distances:
38 1 0.01
40 2 0.01
42 3 0.02
44 1 0.01
45 3 0.02
46 1 0.01
47 69 0.38
49 101 0.56
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (40 bp):
TCACATACTGGCCATTAGGCCTTATCACATATATACACTT
Found at i:103653335 original size:47 final size:47
Alignment explanation
Indices: 103652705--103653334 Score: 956
Period size: 47 Copynumber: 13.3 Consensus size: 47
103652695 CCCTTCGGGA
* * *
103652705 CTTATCACATTTATACACTTTCACA-TCGATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTC-ATCACATTGGCCATTCGGC
*
103652752 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
103652799 CTTATCACTTATATACACTTTCACATCCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
103652846 CTTATCACATATATACGCTTCCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
103652893 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
103652940 CTTATCACATATATACGCTTCCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
103652987 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
103653034 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
103653081 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
103653128 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
103653175 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
103653224 CTTGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
103653273 CTTATCACATATATACACACTTTCACATTCATCACGTTGGCCATTCGGT
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
103653322 CTTATCACATATA
1 CTTATCACATATA
103653335 CTATCAAGTA
Statistics
Matches: 539, Mismatches: 39, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
47 401 0.74
48 2 0.00
49 136 0.25
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:103662634 original size:107 final size:107
Alignment explanation
Indices: 103662497--103662718 Score: 417
Period size: 107 Copynumber: 2.1 Consensus size: 107
103662487 TACATTCAAA
103662497 TAAACAAAATTAGAGAAAATAAACTATTAAGGGCCTTTCCTTAAAATTTTTACTCTATTCTCATT
1 TAAACAAAATTAGAGAAAATAAACTATTAAGGGCCTTTCCTTAAAATTTTTACTCTATTCTCATT
103662562 ATTTCCGAACACAAAACATAAAAAAGCTCATTTTTTTAAGTC
66 ATTTCCGAACACAAAACATAAAAAAGCTCATTTTTTTAAGTC
* *
103662604 TAAACAAAATTGGAGAAAATAAACTATTAAGGGCCTTTCCTTAGAATTTTTACTCTATTCTCATT
1 TAAACAAAATTAGAGAAAATAAACTATTAAGGGCCTTTCCTTAAAATTTTTACTCTATTCTCATT
103662669 ATTTCCGAACACAAAACATAAAAAAGCTCATTTTTTTAAGTC
66 ATTTCCGAACACAAAACATAAAAAAGCTCATTTTTTTAAGTC
*
103662711 TAAGCAAA
1 TAAACAAA
103662719 GTTGCGATTG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 112 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.34
Consensus pattern (107 bp):
TAAACAAAATTAGAGAAAATAAACTATTAAGGGCCTTTCCTTAAAATTTTTACTCTATTCTCATT
ATTTCCGAACACAAAACATAAAAAAGCTCATTTTTTTAAGTC
Found at i:103662988 original size:17 final size:18
Alignment explanation
Indices: 103662964--103663016 Score: 67
Period size: 17 Copynumber: 3.1 Consensus size: 18
103662954 AATAAAAAAT
103662964 ACAATTATAATAATATAA
1 ACAATTATAATAATATAA
*
103662982 A-AATTATAATAACA-AA
1 ACAATTATAATAATATAA
103662998 ACAATTATAA-AATAATAA
1 ACAATTATAATAAT-ATAA
103663016 A
1 A
103663017 TTTAAACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
16 5 0.17
17 21 0.70
18 4 0.13
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (18 bp):
ACAATTATAATAATATAA
Found at i:103663960 original size:18 final size:19
Alignment explanation
Indices: 103663929--103663978 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
103663919 TAATATATAA
*
103663929 ATTTTGAAATTTTTATAAA-T
1 ATTTTG-AA-TTTTAAAAATT
103663949 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAATT
103663968 ATTTT-AATTTT
1 ATTTTGAATTTT
103663979 TTTTGTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 14 0.50
19 8 0.29
20 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:103663960 original size:19 final size:20
Alignment explanation
Indices: 103663929--103663979 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
103663919 TAATATATAA
*
103663929 ATTTTGAAATTTTTATAAA-T
1 ATTTTG-AATTTTTAAAAATT
103663949 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
103663968 ATTTT-AATTTTT
1 ATTTTGAATTTTT
103663980 TTTGTAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 10 0.36
19 12 0.43
20 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:103664214 original size:7 final size:7
Alignment explanation
Indices: 103664166--103664213 Score: 87
Period size: 7 Copynumber: 6.9 Consensus size: 7
103664156 ATTTGATAAA
103664166 CTCAAAG
1 CTCAAAG
103664173 CTCAAAG
1 CTCAAAG
103664180 CTCAAAG
1 CTCAAAG
103664187 CTCAAAG
1 CTCAAAG
103664194 CTCAAAG
1 CTCAAAG
*
103664201 CTCAAAA
1 CTCAAAG
103664208 CTCAAA
1 CTCAAA
103664214 ATTCAATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.46, C:0.29, G:0.10, T:0.15
Consensus pattern (7 bp):
CTCAAAG
Found at i:103664219 original size:7 final size:7
Alignment explanation
Indices: 103664163--103664219 Score: 60
Period size: 7 Copynumber: 8.1 Consensus size: 7
103664153 TGGATTTGAT
103664163 AAACTCA
1 AAACTCA
*
103664170 AAGCTCA
1 AAACTCA
*
103664177 AAGCTCA
1 AAACTCA
*
103664184 AAGCTCA
1 AAACTCA
*
103664191 AAGCTCA
1 AAACTCA
*
103664198 AAGCTCA
1 AAACTCA
103664205 AAACTCA
1 AAACTCA
*
103664212 AAATTCA
1 AAACTCA
103664219 A
1 A
103664220 TTTTTATTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.49, C:0.26, G:0.09, T:0.16
Consensus pattern (7 bp):
AAACTCA
Found at i:103670397 original size:23 final size:24
Alignment explanation
Indices: 103670364--103670413 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
103670354 ATTTTTTTTC
103670364 TTCTAAATTTA-ATGTAAAATAATT
1 TTCTAAATTTATAT-TAAAATAATT
*
103670388 TTCT-AATTTATATTAAAATAGTT
1 TTCTAAATTTATATTAAAATAATT
103670411 TTC
1 TTC
103670414 CTCTAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (24 bp):
TTCTAAATTTATATTAAAATAATT
Found at i:103672157 original size:21 final size:22
Alignment explanation
Indices: 103672113--103672157 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
103672103 ATTAAAATTG
* *
103672113 ACCTAAACTCAAAATGATTAAA
1 ACCTAAAATCAAAATGACTAAA
*
103672135 ACCTAAAAT-AAAATGACTCAA
1 ACCTAAAATCAAAATGACTAAA
103672156 AC
1 AC
103672158 ACATAACTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.56, C:0.20, G:0.04, T:0.20
Consensus pattern (22 bp):
ACCTAAAATCAAAATGACTAAA
Found at i:103675528 original size:22 final size:22
Alignment explanation
Indices: 103675497--103675540 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
103675487 AATTATTAAC
*
103675497 ATAATGAATTTTAAATAATTTT
1 ATAATAAATTTTAAATAATTTT
* *
103675519 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAAATAATTTT
103675541 GATCATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATAAATTTTAAATAATTTT
Found at i:103675703 original size:22 final size:22
Alignment explanation
Indices: 103675677--103675721 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
103675667 ATTATGTGTA
103675677 TTAATTCATAATATAA-TTAATT
1 TTAATT-ATAATATAATTTAATT
* *
103675699 TTAATTTTAATCTAATTTAATT
1 TTAATTATAATATAATTTAATT
103675721 T
1 T
103675722 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATAATATAATTTAATT
Found at i:103676017 original size:33 final size:33
Alignment explanation
Indices: 103675970--103676035 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
103675960 AAAAACTTCA
* * *
103675970 AACTTGCCACATGTGTGGCTGGCCATGGGAGGG
1 AACTTGCCAAATGTGCGGCAGGCCATGGGAGGG
103676003 AACTTGCCAAATGTGCGGCAGGCCATGGGAGGG
1 AACTTGCCAAATGTGCGGCAGGCCATGGGAGGG
103676036 CTCTTTGGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.39, T:0.18
Consensus pattern (33 bp):
AACTTGCCAAATGTGCGGCAGGCCATGGGAGGG
Found at i:103685047 original size:15 final size:15
Alignment explanation
Indices: 103684999--103685067 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
103684989 TAAAGATAAC
*
103684999 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
* *
103685013 AAGAAATCCA-AGATT
1 AAGAAACCCAGA-ATA
*
103685028 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
103685043 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
103685058 AAGAAACCCA
1 AAGAAACCCA
103685068 AGATACGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
14 9 0.20
15 34 0.77
16 1 0.02
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:103685063 original size:30 final size:30
Alignment explanation
Indices: 103684999--103685067 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
103684989 TAAAGATAAC
* *
103684999 AAGAAAACC-GAATAAAGAAATCCAAGATT
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
103685028 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
103685058 AAGAAACCCA
1 AAGAAACCCA
103685068 AGATACGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:103688172 original size:46 final size:46
Alignment explanation
Indices: 103687997--103688172 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
103687987 TGTAACCCGC
* * * * *
103687997 CCATAAGTGAAATTGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * * * * *
103688043 CCATAACTGAACTCGGACTCAACTCAACTACTTTGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * *
103688089 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
103688136 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
103688173 TGCCCAAATA
Statistics
Matches: 99, Mismatches: 26, Indels: 10
0.73 0.19 0.07
Matches are distributed among these distances:
45 2 0.02
46 63 0.64
47 32 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:103696466 original size:46 final size:46
Alignment explanation
Indices: 103696414--103697038 Score: 923
Period size: 46 Copynumber: 13.6 Consensus size: 46
103696404 GCTTTCTGAA
103696414 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
103696460 ATGAAATGTGTAAGTCCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
103696506 ATGAAATGTGTAAGACCATGGTTAAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103696552 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** *
103696598 ATGAAATGTGTAAGACTTTGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
103696644 AT-AAATTGTGTAAGACCATGGTTGAAAGACACCATGGCAACAGGAT
1 ATGAAA-TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
103696690 ATAAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103696736 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103696782 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103696828 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103696874 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** ** * *
103696919 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * * *
103696965 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
103697011 A-AAAATGAGTAAGACCATAGTTGAAAGA
1 ATGAAATGTGTAAGACCATGGTTGAAAGA
103697039 CATTATGGCA
Statistics
Matches: 539, Mismatches: 37, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
45 63 0.12
46 473 0.88
47 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:103698494 original size:16 final size:15
Alignment explanation
Indices: 103698446--103698496 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
103698436 TAACAGAGTG
*
103698446 AAAGAAAGAAAAGAA
1 AAAGAAAGAGAAGAA
* *
103698461 AAA-AAAAAGAAAGGA
1 AAAGAAAGAG-AAGAA
103698476 AAAGAAAGATGAAGAA
1 AAAGAAAGA-GAAGAA
103698492 AAAGA
1 AAAGA
103698497 GAAACGAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 4 0.14
15 10 0.36
16 13 0.46
17 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (15 bp):
AAAGAAAGAGAAGAA
Found at i:103699951 original size:25 final size:25
Alignment explanation
Indices: 103699923--103700017 Score: 79
Period size: 25 Copynumber: 3.7 Consensus size: 25
103699913 AACTAATAAT
*
103699923 TATAAATTATAA-AATTTATATTAAA
1 TATAAAATATAATAA-TTATATTAAA
103699948 TATAAAATATAATAATTATATTAAAAA
1 TATAAAATATAATAATTATATT--AAA
*
103699975 TTTAAATATTACTAATAA-TATATTAAA
1 TATAAA-A-TA-TAATAATTATATTAAA
* *
103700002 -ATATAATATAGTAATT
1 TATAAAATATAATAATT
103700018 TATACCTCTA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
23 5 0.09
24 3 0.05
25 19 0.33
26 5 0.09
27 11 0.19
28 1 0.02
29 8 0.14
30 6 0.10
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (25 bp):
TATAAAATATAATAATTATATTAAA
Found at i:103700917 original size:21 final size:20
Alignment explanation
Indices: 103700896--103700949 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
103700886 TGTTTGAAAT
103700896 TTTAATATAAATATTATAAA
1 TTTAATATAAATATTATAAA
* *
103700916 TTTAAT-TATATTTTAT-AA
1 TTTAATATAAATATTATAAA
*
103700934 TTTAATATGAATATTA
1 TTTAATATAAATATTA
103700950 GTTTTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 8 0.29
19 14 0.50
20 6 0.21
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTAATATAAATATTATAAA
Found at i:103703503 original size:20 final size:20
Alignment explanation
Indices: 103703478--103703515 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
103703468 GTAACTTAAT
*
103703478 AAACCTTATTTTGATTAAAC
1 AAACCTTATTTTAATTAAAC
103703498 AAACCTTATTTTAATTAA
1 AAACCTTATTTTAATTAA
103703516 TCTAATGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (20 bp):
AAACCTTATTTTAATTAAAC
Found at i:103704744 original size:24 final size:22
Alignment explanation
Indices: 103704692--103704748 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
103704682 GATTCTACAA
103704692 AATTTAAATTAGATAACTTATT
1 AATTTAAATTAGATAACTTATT
* * *
103704714 ATTTTTAAATTATTATAGCTTAATT
1 A-ATTTAAATTA-GATAACTT-ATT
103704739 AATTTAAATT
1 AATTTAAATT
103704749 TATAATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 1 0.04
23 9 0.32
24 14 0.50
25 4 0.14
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
AATTTAAATTAGATAACTTATT
Found at i:103706018 original size:12 final size:13
Alignment explanation
Indices: 103705996--103706029 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
103705986 AATAGGAAAA
103705996 TATTATTTTATTT
1 TATTATTTTATTT
103706009 TATT-TTTTATTT
1 TATTATTTTATTT
*
103706021 TTTTATTTT
1 TATTATTTT
103706030 TGATTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (13 bp):
TATTATTTTATTT
Found at i:103706026 original size:15 final size:15
Alignment explanation
Indices: 103706006--103706036 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
103705996 TATTATTTTA
*
103706006 TTTTATTTTTTATTT
1 TTTTATTTTTGATTT
103706021 TTTTATTTTTGATTT
1 TTTTATTTTTGATTT
103706036 T
1 T
103706037 ATATTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (15 bp):
TTTTATTTTTGATTT
Found at i:103713943 original size:46 final size:46
Alignment explanation
Indices: 103713839--103713969 Score: 167
Period size: 46 Copynumber: 2.8 Consensus size: 46
103713829 GGAAATTGAT
* * * *
103713839 ATCCAAACTCGTTGAGTTGCATTTCGAGTTCACCTATGGATGCAAGC
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGC
*
103713886 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA-C
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGC-AAGC
*
103713932 A-CTCGAGCTCGTTGAGTTGCGTTCCGAGTTCATTATGG
1 ATC-CGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
103713970 GTGAGATTAT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
45 1 0.01
46 44 0.59
47 30 0.40
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGC
Found at i:103722002 original size:46 final size:45
Alignment explanation
Indices: 103721877--103722040 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 45
103721867 GTGTCGCCGC
* * * *
103721877 CATGTCCAAGACATGGTCTTACACTG-ACACATCTCGTAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGCACTCGTCTCG-AGCCGATA
* *
103721922 CATGTCCCAGACAT-GTCTTACACTGGC-TTACGTCTCGAGGCTGATA
1 CATGTCCCAGACATGGTCTTACACT-GCACT-CGTCTCGA-GCCGATA
* * *
103721968 CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAATGCCAATGC
1 CATGTCCCAGACATGGTCTTACACT-GCACTCGTCTCGA-GCCGAT-A
*
103722015 CATGTTCCAGACATGGTCTTACACTG
1 CATGTCCCAGACATGGTCTTACACTG
103722041 GCTCTCATAA
Statistics
Matches: 98, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
44 10 0.10
45 15 0.15
46 48 0.49
47 15 0.15
48 10 0.10
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGCACTCGTCTCGAGCCGATA
Found at i:103722901 original size:61 final size:62
Alignment explanation
Indices: 103722759--103722901 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 62
103722749 TCAAGCTTTA
*
103722759 CTGGGCCTAAGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCTAA-CCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
* * *
103722821 CTGGGCCATAGGCCC--TTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATCAAT
1 CTGGGCC-TA-ACCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAAT
103722881 CTGGGCCGTAACCCTATTACA
1 CTGGGCC-TAACCCTATTACA
103722902 AGTTGAGATA
Statistics
Matches: 69, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
59 3 0.04
60 29 0.42
61 22 0.32
62 10 0.14
63 5 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (62 bp):
CTGGGCCTAACCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
Found at i:103725960 original size:62 final size:60
Alignment explanation
Indices: 103725822--103725962 Score: 153
Period size: 60 Copynumber: 2.3 Consensus size: 60
103725812 ATCAGAGTTA
* *
103725822 ACTGGGCCTTAGCCCATATCAATATTAATTTGGGCCATAGGCCCTTACAGTATCAAAGTAT
1 ACTGGGCCTT-GCCCATATCAATATCAATCTGGGCCATAGGCCCTTACAGTATCAAAGTAT
* * * *
103725883 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTA-GCCCTATTACAAGT-TGAGATA-TAT
1 ACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGGCCC--TTAC-AGTATCA-A-AGTAT
103725945 ACTGGGCCTTGCCCATAT
1 ACTGGGCCTTGCCCATAT
103725963 TAACATAGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
59 4 0.06
60 24 0.35
61 15 0.22
62 24 0.35
63 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
ACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGGCCCTTACAGTATCAAAGTAT
Found at i:103734474 original size:20 final size:21
Alignment explanation
Indices: 103734449--103734488 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
103734439 ACTTTGAAAT
103734449 AGGGCAA-ACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
103734469 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
103734489 CCACTTCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.23, C:0.28, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:103737541 original size:26 final size:26
Alignment explanation
Indices: 103737505--103737556 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
103737495 ACAGCCTTTA
103737505 GATTGGAGATCAATCAGAAGTTCAAT
1 GATTGGAGATCAATCAGAAGTTCAAT
*
103737531 GATTGGTGATCAATCAGAAGTTCAAT
1 GATTGGAGATCAATCAGAAGTTCAAT
103737557 CCTCTATGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.29
Consensus pattern (26 bp):
GATTGGAGATCAATCAGAAGTTCAAT
Found at i:103737829 original size:69 final size:69
Alignment explanation
Indices: 103737753--103737891 Score: 233
Period size: 69 Copynumber: 2.0 Consensus size: 69
103737743 TTGGAATTTT
*
103737753 ATTCTTAAATGTTGTTATATTAAAATATTACAAAATCAAAGTTAATGATTTGGAATCAAAAATAA
1 ATTCTTAAATGTTGTTATATCAAAATATTACAAAATCAAAGTTAATGATTTGGAATCAAAAATAA
103737818 AAGA
66 AAGA
* * **
103737822 ATTCTTAAATGTTGTTATATCAAAATGTTACAAAGTCAAAGTTAATGATTTGGAATTGAAAATAA
1 ATTCTTAAATGTTGTTATATCAAAATATTACAAAATCAAAGTTAATGATTTGGAATCAAAAATAA
103737887 AAGA
66 AAGA
103737891 A
1 A
103737892 AGAAAAAAGT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (69 bp):
ATTCTTAAATGTTGTTATATCAAAATATTACAAAATCAAAGTTAATGATTTGGAATCAAAAATAA
AAGA
Found at i:103738369 original size:42 final size:43
Alignment explanation
Indices: 103738303--103738389 Score: 158
Period size: 42 Copynumber: 2.0 Consensus size: 43
103738293 TTTTAAAGAG
103738303 ATAAAATTATTAGAAATTGAGTAAAAGTTTAAATGTATAAATGA
1 ATAAAATTATTA-AAATTGAGTAAAAGTTTAAATGTATAAATGA
103738347 ATAAAATTATT-AAATTGAGTAAAAGTTTAAATGTATAAATGA
1 ATAAAATTATTAAAATTGAGTAAAAGTTTAAATGTATAAATGA
103738389 A
1 A
103738390 CATTTCAATC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 32 0.74
44 11 0.26
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (43 bp):
ATAAAATTATTAAAATTGAGTAAAAGTTTAAATGTATAAATGA
Found at i:103757541 original size:16 final size:17
Alignment explanation
Indices: 103757522--103757560 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
103757512 CTTTATTTAC
103757522 TTAATAT-ATTATAATA
1 TTAATATAATTATAATA
103757538 TTAATATAATTATAATA
1 TTAATATAATTATAATA
103757555 -TAATAT
1 TTAATAT
103757561 TATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATAATTATAATA
Found at i:103764480 original size:16 final size:15
Alignment explanation
Indices: 103764438--103764481 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
103764428 ATTTATTAAT
*
103764438 TAAATAATTATATTA
1 TAAATAATTATATGA
*
103764453 TAAGATATTTATATGA
1 TAA-ATAATTATATGA
103764469 TAAATAAATTATA
1 TAAAT-AATTATA
103764482 GAAATACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 5 0.21
16 19 0.79
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (15 bp):
TAAATAATTATATGA
Found at i:103765853 original size:18 final size:18
Alignment explanation
Indices: 103765830--103765875 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
103765820 TAAATAAAGG
*
103765830 TACTGAATAATTGACTGC
1 TACTGAATAATTAACTGC
*
103765848 TACTGAATAATTAACTGT
1 TACTGAATAATTAACTGC
103765866 TACTGAATAA
1 TACTGAATAA
103765876 ATGATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (18 bp):
TACTGAATAATTAACTGC
Found at i:103765886 original size:18 final size:18
Alignment explanation
Indices: 103765865--103765906 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
103765855 TAATTAACTG
103765865 TTACTGAATAAATGATTA
1 TTACTGAATAAATGATTA
* *
103765883 TTACTGATTAACTGATTA
1 TTACTGAATAAATGATTA
103765901 TTACTG
1 TTACTG
103765907 TTGACTGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.43
Consensus pattern (18 bp):
TTACTGAATAAATGATTA
Found at i:103765970 original size:18 final size:17
Alignment explanation
Indices: 103765947--103765995 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
103765937 AACTGATTGT
*
103765947 TACTGAATATTGGACTAC
1 TACTGAATATTGGA-TAA
*
103765965 TACTGAATGTTTGGATAA
1 TACTGAAT-ATTGGATAA
103765983 TACTGAATATTGG
1 TACTGAATATTGG
103765996 TTATTACTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 4 0.15
18 18 0.67
19 5 0.19
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (17 bp):
TACTGAATATTGGATAA
Found at i:103768237 original size:16 final size:17
Alignment explanation
Indices: 103768218--103768256 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
103768208 CTTTATTTAC
103768218 TTAATAT-ATTATAATA
1 TTAATATAATTATAATA
103768234 TTAATATAATTATAATA
1 TTAATATAATTATAATA
103768251 -TAATAT
1 TTAATAT
103768257 TATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATAATTATAATA
Found at i:103771107 original size:37 final size:37
Alignment explanation
Indices: 103771066--103771241 Score: 291
Period size: 37 Copynumber: 4.8 Consensus size: 37
103771056 TTTGAGTACT
103771066 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
103771103 TCTGATCAAGAAACAAAGTGATAAGTGG-TCACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCT-ACACTTA
*
103771140 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
103771177 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
103771214 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
103771242 TAGCTTCAGC
Statistics
Matches: 133, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
36 1 0.01
37 131 0.98
38 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:103771313 original size:45 final size:46
Alignment explanation
Indices: 103771204--103771327 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
103771194 GTGATAAGTG
* *
103771204 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
103771250 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
103771295 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
103771328 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:103778267 original size:37 final size:37
Alignment explanation
Indices: 103778226--103778401 Score: 282
Period size: 37 Copynumber: 4.8 Consensus size: 37
103778216 TTTGAGTACT
103778226 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
103778263 TCTGATCAAGAAACAAAGTGATAAGTGG-TCACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCT-ACACTTA
*
103778300 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
* *
103778337 TCTGATCAGGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
103778374 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
103778402 TAGCTTCAGC
Statistics
Matches: 131, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.01
37 129 0.98
38 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:103778473 original size:45 final size:46
Alignment explanation
Indices: 103778364--103778487 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
103778354 GTGATAAGTG
* *
103778364 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
103778410 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
103778455 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
103778488 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:103781385 original size:132 final size:132
Alignment explanation
Indices: 103781208--103781816 Score: 562
Period size: 132 Copynumber: 4.6 Consensus size: 132
103781198 TATTTGAGTT
* ** * * *
103781208 AGATCGCAACTCTGAATAGCTTGTTGATTTAAGATCGCAACTGATATTGTCAAGGTTTGCTGATT
1 AGATCGCAACTCTGAACAGCTCATTGATTTAAGATCGCAACTGATATTGTTAAAGTTCGCTGATT
103781273 TAAGATCGCAACCTAAGTTCATTCGATTT-AGAATCATGAACAAATTTTATTTGAGTTAGCTAAT
66 TAAGATCGCAACCTAAGTTCATTCGATTTAAG-ATCATGAACAAATTTTATTTGAGTTAGCTAAT
103781337 CTC
130 CTC
* * * * * ** * *
103781340 AAATTGCAACTCTGAACAACTAATTGATTTAATATCGCAGTTGATATTGTTAAACTTCACT-AGT
1 AGATCGCAACTCTGAACAGCTCATTGATTTAAGATCGCAACTGATATTGTTAAAGTTCGCTGA-T
* * * *
103781404 TTAAGATCGCAACCTAAGTTCATTTGGTTTAAGATCGTGAACAAATTTTATTTGAGTTAGCTGAT
65 TTAAGATCGCAACCTAAGTTCATTCGATTTAAGATCATGAACAAATTTTATTTGAGTTAGCTAAT
103781469 CTC
130 CTC
* * ** * ** * * * *
103781472 ATATCACAACTCCAAATAGCTCGCTGATTTAAGATTGCAAATGATATTGTTAATGTTCACTGATT
1 AGATCGCAACTCTGAACAGCTCATTGATTTAAGATCGCAACTGATATTGTTAAAGTTCGCTGATT
* * * * * *
103781537 TAATATAGCAACCTAAGTTCATTCAATTTAAAATCGTGAA-AATTTTTTATTTGAGTTAGCTAAT
66 TAAGATCGCAACCTAAGTTCATTCGATTTAAGATCATGAACAA-ATTTTATTTGAGTTAGCTAAT
103781601 CTC
130 CTC
* * * * * * * *
103781604 GGATAGCAACT-TCAAACAGCTCACTGATTTAAGATCGCAATTGATATTATTAAGGCTT-GTTGA
1 AGATCGCAACTCT-GAACAGCTCATTGATTTAAGATCGCAACTGATATTGTTAAAG-TTCGCTGA
* * * ** * * *
103781667 TTTAAGACCGTAACCTAATTTCATTTTATTTAATATCATGAATAAATTTTATTTGAGTTAGCTGA
64 TTTAAGATCGCAACCTAAGTTCATTCGATTTAAGATCATGAACAAATTTTATTTGAGTTAGCTAA
103781732 TCTC
129 TCTC
* * ** * * ** * * *
103781736 AGATCGCAACTATGAACAACTGTTTGGTTTAAAATTACAGCTGATATTGTTAAAGTTAGCTAATT
1 AGATCGCAACTCTGAACAGCTCATTGATTTAAGATCGCAACTGATATTGTTAAAGTTCGCTGATT
*
103781801 TAAGGTCGCAACCTAA
66 TAAGATCGCAACCTAA
103781817 CTCTAGTTAA
Statistics
Matches: 382, Mismatches: 86, Indels: 18
0.79 0.18 0.04
Matches are distributed among these distances:
131 5 0.01
132 369 0.97
133 8 0.02
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (132 bp):
AGATCGCAACTCTGAACAGCTCATTGATTTAAGATCGCAACTGATATTGTTAAAGTTCGCTGATT
TAAGATCGCAACCTAAGTTCATTCGATTTAAGATCATGAACAAATTTTATTTGAGTTAGCTAATC
TC
Found at i:103781692 original size:264 final size:264
Alignment explanation
Indices: 103781208--103781746 Score: 654
Period size: 264 Copynumber: 2.0 Consensus size: 264
103781198 TATTTGAGTT
* ** * * * **
103781208 AGATCGCAACTCTGAATAGCTTGTTGATTTAAGATCGCAACTGATATTGTCAAGGTTTGCTGATT
1 AGATCACAACTCCAAATAGCTCGCTGATTTAAGATCGCAAATGATATTGTCAAGGTTCACTGATT
* * *
103781273 TAAGATCGCAACCTAAGTTCATTCGATTTAGAATCATGAACAAATTTTATTTGAGTTAGCTAATC
66 TAAGATAGCAACCTAAGTTCATTCAATTTAAAATCATGAACAAATTTTATTTGAGTTAGCTAATC
* * * * * *
103781338 TCAAATTGCAACTCTGAACAACTAATTGATTTAATATCGCAGTTGATATTGTTAAACTTCACTAG
131 TCAAATAGCAACTCTAAACAACTAACTGATTTAAGATCGCAATTGATATTATTAAACTTCACTAG
* * *
103781403 TTTAAGATCGCAACCTAAGTTCATTTGGTTTAAGATCGTGAACAAATTTTATTTGAGTTAGCTGA
196 TTTAAGACCGCAACCTAAGTTCATTTGATTTAAGATCATGAACAAATTTTATTTGAGTTAGCTGA
103781468 TCTC
261 TCTC
* * * *
103781472 ATATCACAACTCCAAATAGCTCGCTGATTTAAGATTGCAAATGATATTGTTAATGTTCACTGATT
1 AGATCACAACTCCAAATAGCTCGCTGATTTAAGATCGCAAATGATATTGTCAAGGTTCACTGATT
* * *
103781537 TAATATAGCAACCTAAGTTCATTCAATTTAAAATCGTGAA-AATTTTTTATTTGAGTTAGCTAAT
66 TAAGATAGCAACCTAAGTTCATTCAATTTAAAATCATGAACAA-ATTTTATTTGAGTTAGCTAAT
** * * * *
103781601 CTCGGATAGCAACT-TCAAACAGCTCACTGATTTAAGATCGCAATTGATATTATTAAGGCTT--G
130 CTCAAATAGCAACTCT-AAACAACTAACTGATTTAAGATCGCAATTGATATTATTAA-ACTTCAC
* * * * * *
103781663 TTGATTTAAGACCGTAACCTAATTTCATTTTATTTAATATCATGAATAAATTTTATTTGAGTTAG
193 TAG-TTTAAGACCGCAACCTAAGTTCATTTGATTTAAGATCATGAACAAATTTTATTTGAGTTAG
103781728 CTGATCTC
257 CTGATCTC
*
103781736 AGATCGCAACT
1 AGATCACAACT
103781747 ATGAACAACT
Statistics
Matches: 230, Mismatches: 41, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
263 5 0.02
264 222 0.97
265 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (264 bp):
AGATCACAACTCCAAATAGCTCGCTGATTTAAGATCGCAAATGATATTGTCAAGGTTCACTGATT
TAAGATAGCAACCTAAGTTCATTCAATTTAAAATCATGAACAAATTTTATTTGAGTTAGCTAATC
TCAAATAGCAACTCTAAACAACTAACTGATTTAAGATCGCAATTGATATTATTAAACTTCACTAG
TTTAAGACCGCAACCTAAGTTCATTTGATTTAAGATCATGAACAAATTTTATTTGAGTTAGCTGA
TCTC
Found at i:103796435 original size:39 final size:39
Alignment explanation
Indices: 103796382--103796456 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
103796372 AAATATGGTT
* *
103796382 TTAATTAATAATAAAACAAAGTGGCATGGGGGAGTGAGA
1 TTAATTAATAATAAAACAAAGTAGCATAGGGGAGTGAGA
*
103796421 TTAATTAATAATAAAATAAAGTAGCATAGGGGAGTG
1 TTAATTAATAATAAAACAAAGTAGCATAGGGGAGTG
103796457 GGATCAGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.45, C:0.04, G:0.25, T:0.25
Consensus pattern (39 bp):
TTAATTAATAATAAAACAAAGTAGCATAGGGGAGTGAGA
Found at i:103800473 original size:50 final size:50
Alignment explanation
Indices: 103800360--103800601 Score: 270
Period size: 50 Copynumber: 4.7 Consensus size: 50
103800350 ATTTGGGTAA
* * *
103800360 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* *
103800416 AGAGGTCCCCTGTAAGACCATGCCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
103800466 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
103800516 AGAAGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
** *
103800566 AGAACATCCCATGTAAGACTATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
103800602 TTTGGCATGT
Statistics
Matches: 162, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 89 0.55
51 28 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:103800551 original size:100 final size:103
Alignment explanation
Indices: 103800360--103800609 Score: 337
Period size: 100 Copynumber: 2.4 Consensus size: 103
103800350 ATTTGGGTAA
*
103800360 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAAGTCCC
* *
103800425 CTGTAAGACCATGCCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGCCTGGGACATGGCATGGGCACC-ATCACG
* * *
103800466 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAAGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
*
103800528 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGCCTGGGACATGGCATGGGCACCATCACG
* * *
103800566 AGAACATCCCATGTAAGACTATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
103800610 GTTATTATCA
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.38
101 38 0.29
105 2 0.02
106 40 0.31
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
TAAGACCATGCCTGGGACATGGCATGGGCACCATCACG
Done.