Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 312 of 349
Found at i:104230701 original size:31 final size:31
Alignment explanation
Indices: 104230663--104230721 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
104230653 AAGTAGCCGA
104230663 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
104230694 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
104230722 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:104230798 original size:50 final size:50
Alignment explanation
Indices: 104230701--104230927 Score: 373
Period size: 50 Copynumber: 4.5 Consensus size: 50
104230691 CATTGATCAG
* * * *
104230701 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
104230752 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
104230802 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
104230852 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
104230902 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
104230928 GTTGCCATGG
Statistics
Matches: 166, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
50 144 0.87
51 22 0.13
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:104237117 original size:13 final size:14
Alignment explanation
Indices: 104237090--104237120 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
104237080 AGTATTTCCT
104237090 ATATAATATACAAA
1 ATATAATATACAAA
104237104 ATATAATA-ACAAA
1 ATATAATATACAAA
104237117 ATAT
1 ATAT
104237121 TTATAAGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (14 bp):
ATATAATATACAAA
Found at i:104237150 original size:17 final size:17
Alignment explanation
Indices: 104237116--104237162 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
104237106 ATAATAACAA
* * *
104237116 AATATTTATAAGAGAAT
1 AATAATTATAAAAAAAT
104237133 AATAATTATAAAAAAAT
1 AATAATTATAAAAAAAT
104237150 ATATAA-TATAAAA
1 A-ATAATTATAAAA
104237163 GTAGGTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (17 bp):
AATAATTATAAAAAAAT
Found at i:104237270 original size:24 final size:25
Alignment explanation
Indices: 104237215--104237271 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
104237205 CATTTTAAAA
104237215 TAAAATA-ATACATAATTAATAATT
1 TAAAATATATACATAATTAATAATT
* *
104237239 TAATATATATACATAA-T-ATGAGTT
1 TAAAATATATACATAATTAAT-AATT
104237263 TAAAATATA
1 TAAAATATA
104237272 ATTTAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 2 0.07
24 18 0.64
25 8 0.29
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (25 bp):
TAAAATATATACATAATTAATAATT
Found at i:104237380 original size:25 final size:24
Alignment explanation
Indices: 104237334--104237385 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
104237324 CATAACATAT
* *
104237334 ATAAAAAATAATAAGTAATATAGA
1 ATAAAAAATAATAAATAATATAAA
**
104237358 ATAAAAATATAATAAATGTTATAAA
1 ATAAAAA-ATAATAAATAATATAAA
104237383 ATA
1 ATA
104237386 TAATTTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (24 bp):
ATAAAAAATAATAAATAATATAAA
Found at i:104239599 original size:29 final size:29
Alignment explanation
Indices: 104239513--104239599 Score: 67
Period size: 29 Copynumber: 3.1 Consensus size: 29
104239503 AAAAAAAGAC
* *
104239513 ATAG-TGAGATGACCAAAAA--AAAGGAAA
1 ATAGTTGAG-TGACCAAAAACGAAAAGATA
* * *
104239540 ATAGTTGGGTGATC--AAACGAAAAAAATTA
1 ATAGTTGAGTGACCAAAAACG-AAAAGA-TA
104239569 ATAGTTGAGTGACCAAAAACGAAAAGATA
1 ATAGTTGAGTGACCAAAAACGAAAAGATA
104239598 AT
1 AT
104239600 TGGGTGACCT
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
25 3 0.07
27 8 0.18
28 7 0.16
29 17 0.38
30 5 0.11
31 5 0.11
ACGTcount: A:0.53, C:0.08, G:0.21, T:0.18
Consensus pattern (29 bp):
ATAGTTGAGTGACCAAAAACGAAAAGATA
Found at i:104241541 original size:29 final size:28
Alignment explanation
Indices: 104241509--104241572 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
104241499 ACATGACATG
* * *
104241509 AAAATATCAAAAATAATAAAAGAAATAAT
1 AAAATAACAAAAACAAAAAAAGAAA-AAT
* *
104241538 AAAATAACAAGAACAAAAAAATAAAAAT
1 AAAATAACAAAAACAAAAAAAGAAAAAT
104241566 AAAATAA
1 AAAATAA
104241573 TAATTGTCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.16
Consensus pattern (28 bp):
AAAATAACAAAAACAAAAAAAGAAAAAT
Found at i:104241543 original size:17 final size:16
Alignment explanation
Indices: 104241516--104241563 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
104241506 ATGAAAATAT
104241516 CAAAAATAATAAAAGAA
1 CAAAAA-AATAAAAGAA
104241533 -ATAATAAAATAACAAGAA
1 CA-AA-AAAATAA-AAGAA
104241551 CAAAAAAATAAAA
1 CAAAAAAATAAAA
104241564 ATAAAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
16 3 0.11
17 14 0.52
18 9 0.33
19 1 0.04
ACGTcount: A:0.77, C:0.06, G:0.04, T:0.12
Consensus pattern (16 bp):
CAAAAAAATAAAAGAA
Found at i:104244800 original size:44 final size:44
Alignment explanation
Indices: 104244743--104245071 Score: 327
Period size: 44 Copynumber: 7.6 Consensus size: 44
104244733 CTCGACTTGT
* * *
104244743 TCTCTGTCCATACAGAGACGCCAAGTCTGCTATCTTTGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGATCTGC
* *
104244787 TCTCTGACAATACAGAGATGCCAAATCTGCT-TCTTCGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGATCTGC
* *
104244830 TCTCTGACAATACAGAGACGCCAAATCTG-TTTCTTCGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGATCTGC
* * *
104244873 TCTCTGACAATACAGAGACGCCAAATTTGCT-TCTTGGATTTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGATCTGC
* * *
104244916 TC-CTCGTCAAATAC-GAAGATGCCAAA--T-C-ATCTTAGATCTGC
1 TCTCT-GAC-AATACAG-AGACGCCAAATCTGCTATCTTTGATCTGC
* * * * *
104244957 TCTTTAACAATATAGAGATGGCAAATCTGCTAT-TTTCGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTT-GATCTGC
* * * * *
104245001 TCTCCGACAATATAGAGATGCCAAATCTGTTATCTTTGATCTGT
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGATCTGC
* *
104245045 TCTCTGCCAATACAGAGACACCAAATC
1 TCTCTGACAATACAGAGACGCCAAATC
104245072 ATCTTAGATT
Statistics
Matches: 241, Mismatches: 30, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
40 13 0.05
41 15 0.06
42 6 0.02
43 97 0.40
44 107 0.44
45 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (44 bp):
TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGATCTGC
Found at i:104245020 original size:84 final size:84
Alignment explanation
Indices: 104244772--104245071 Score: 309
Period size: 86 Copynumber: 3.5 Consensus size: 84
104244762 GCCAAGTCTG
* *
104244772 CTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTCTGA
1 CTATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTCCGA
* *
104244837 CAATACAGAGACGCCAAAT
66 CAATATAGAGATGCCAAAT
* * * * * *
104244856 CTGTTTCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATTTGCTTCTTGGATTTGCTC-CT
1 C--TATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTC-
*
104244920 CGTCAA-ATACGAAGATGCCAAAT
63 CGACAATATA-G-AGATGCCAAAT
* * * * *
104244943 C-ATCTTAGATCTGCTCTTTAACAATATAGAGATGGCAAATCTGCTATTTTCGATCTGCTCTCCG
1 CTATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCT-TCTTCGATCTGCTCTCCG
104245007 ACAATATAGAGATGCCAAAT
65 ACAATATAGAGATGCCAAAT
* * * **
104245027 CTGTTATCTTTGATCTGTTCTCTGCCAATACAGAGACACCAAATC
1 C---TATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATC
104245072 ATCTTAGATT
Statistics
Matches: 173, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
84 49 0.28
85 20 0.12
86 62 0.36
87 11 0.06
88 31 0.18
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (84 bp):
CTATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTCCGA
CAATATAGAGATGCCAAAT
Found at i:104245057 original size:128 final size:127
Alignment explanation
Indices: 104244752--104245085 Score: 379
Period size: 128 Copynumber: 2.6 Consensus size: 127
104244742 TTCTCTGTCC
* *
104244752 ATACAGAGACGCCAAGTCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGC
1 ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAA--T-C
* * * *
104244817 TTCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTTCTTCGATCTGCTCTCTGACA
63 ATCTTAGATCTGCTCTCTAACAATACAGAGACGCCAAATCTGTTTCTTCGATCTGCTCTCCGACA
* * * *
104244882 ATACAGAGACGCCAAATTTGCT-TCTTGGATTTGCTC-CTCGTCAAATAC-GAAGATGCCAAATC
1 ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCT-G-CCAATACAG-AGATGCCAAATC
* * * *
104244944 ATCTTAGATCTGCTCTTTAACAATATAGAGATGGCAAATCTGCTATT-TTCGATCTGCTCTCCGA
63 ATCTTAGATCTGCTCTCTAACAATACAGAGACGCCAAATCTG-T-TTCTTCGATCTGCTCTCCGA
104245008 CA
126 CA
* * * * **
104245010 ATATAGAGATGCCAAATCTGTTATCTTTGATCTGTTCTCTGCCAATACAGAGACACCAAATCATC
1 ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCATC
*
104245075 TTAGATTTGCT
66 TTAGATCTGCT
104245086 TCAACGTAAA
Statistics
Matches: 171, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
127 36 0.21
128 69 0.40
129 29 0.17
130 37 0.22
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (127 bp):
ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCATC
TTAGATCTGCTCTCTAACAATACAGAGACGCCAAATCTGTTTCTTCGATCTGCTCTCCGACA
Found at i:104245191 original size:215 final size:212
Alignment explanation
Indices: 104244754--104245242 Score: 544
Period size: 215 Copynumber: 2.3 Consensus size: 212
104244744 CTCTGTCCAT
* *
104244754 ACAGAGACGCCAAGTCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTT
1 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTT
* * * *
104244819 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTTCTTCGATCTGCTCTCTGACAAT
66 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATC--TATCTTAGATCTGCTCTCTAACAAT
* * * * * *
104244884 ACAGAGACGCCAAATTTGCTTCTTGGATTTGCTCCTCGTCAAATACGAAGATGCCAAATCATCTT
129 ACAGAGAAGCCAAATCTGCTTCTTCGATCTGCTCCTCATCAAACACGAAGATGCCAAATCATCTT
* *
104244949 AGATCTGCTCTTTAACAAT
194 AGATCTGCTCTCTAACAAA
* * * * *
104244968 ATAGAGATGGCAAATCTGCTAT-TTTCGATCTGCTCTCCGACAATATAGAGATGCCAAATCTGTT
1 ACAGAGATGCCAAATCTGCTATCTTT-GATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCT
* * * *
104245032 ATCTTTGATCTGTTCTCTGCCAATACAGAGACACCAAATC-ATCTTAGATTTGCT-TC-AACGTA
65 -TCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTATCTTAGATCTGCTCTCTAAC--A
* *
104245094 A-ACGCGTGAAAGCCAAATCTGCTATATCTTCGATCTGCTCCTCAT-AAACAC-AAGGATGCCAA
127 ATAC-AGAG-AAGCCAAATCTGC--T-TCTTCGATCTGCTCCTCATCAAACACGAA-GATGCCAA
* * *
104245156 ATCATCTTCGATTTGTTCTCTAACAAA
186 ATCATCTTAGATCTGCTCTCTAACAAA
*
104245183 ACAGAGATGCCAAATCTG-TCATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATC
1 ACAGAGATGCCAAATCTGCT-ATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATC
104245243 ATCTTAGATT
Statistics
Matches: 230, Mismatches: 33, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
210 2 0.01
211 4 0.02
212 15 0.07
213 14 0.06
214 56 0.24
215 120 0.52
216 19 0.08
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (212 bp):
ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTT
CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTATCTTAGATCTGCTCTCTAACAATAC
AGAGAAGCCAAATCTGCTTCTTCGATCTGCTCCTCATCAAACACGAAGATGCCAAATCATCTTAG
ATCTGCTCTCTAACAAA
Found at i:104245213 original size:44 final size:44
Alignment explanation
Indices: 104245157--104245373 Score: 137
Period size: 44 Copynumber: 5.0 Consensus size: 44
104245147 GGATGCCAAA
* * * *
104245157 TCATCTTCGATTTGTTCTCTAACAAAACAGAGATGCCAAATCTG
1 TCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTG
* *
104245201 TCATCTTTGATTTGCTCTCTGACAATACAGAGATGCCAAA----
1 TCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTG
* * * * * * *
104245241 TCATCTTAGATTTGCT-TC-AACGTAAATAC-GTGAAAGCTAAATCAG
1 TCATCTTCGATCTGCTCTCTGAC---AATACAGAG-ATGCCAAATCTG
* *
104245286 -CTATGTCTTCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATCTG
1 TC-A--TCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTG
* * *
104245333 T-TTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATC
1 TCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
104245374 ATCTTGGATC
Statistics
Matches: 134, Mismatches: 24, Indels: 31
0.71 0.13 0.16
Matches are distributed among these distances:
38 2 0.01
39 2 0.01
40 17 0.13
41 11 0.08
43 19 0.14
44 53 0.40
45 1 0.01
47 25 0.19
48 3 0.02
49 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (44 bp):
TCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTG
Found at i:104245297 original size:131 final size:131
Alignment explanation
Indices: 104245160--104245405 Score: 350
Period size: 131 Copynumber: 1.9 Consensus size: 131
104245150 TGCCAAATCA
* * * *
104245160 TCTTCGATTTGTTCTCTAAC-AAAACAGAGATGCCAAATCTGTCATCTTTGATTTGCTCTCTGAC
1 TCTTCGATCTGCTCCCTAACGAAAACAGAGATGCCAAATCTGT-ATCTTCGATTTGCTCTCTGAC
*
104245224 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAATACGTGAAAGCTAAATCAGCTA
65 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAATACGTGAAAGCTAAATCAGCTA
104245289 TG
130 TG
** * * *
104245291 TCTTCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCCCTAACGAAAACAGAGATGCCAAATCTGTATCTTCGATTTGCTCTCTGACA
* ** *
104245356 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAATACTTGAA
66 ATACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAATACGTGAA
104245406 GGTCAGATCT
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
131 79 0.79
132 21 0.21
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (131 bp):
TCTTCGATCTGCTCCCTAACGAAAACAGAGATGCCAAATCTGTATCTTCGATTTGCTCTCTGACA
ATACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAAATACGTGAAAGCTAAATCAGCTAT
G
Found at i:104245378 original size:171 final size:169
Alignment explanation
Indices: 104244762--104245387 Score: 573
Period size: 171 Copynumber: 3.7 Consensus size: 169
104244752 ATACAGAGAC
* * * * *
104244762 GCCAAGTCTGCTA-TCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGAT
1 GCCAAATC-GCTATTCTTCGATCTGCTCCCTAACAATACAGAGATGCCAAATCTGTTTCTTCGAT
* * *
104244826 CTGCTCTCTGACAATACAGAGACGCCAAATCTGTTTCTTCGATCTGCTCTCTGACAATACAGAGA
65 CTGCTCTCTGACAATACAGAGATGCCAAATC--TATCTTTGATCTGCTCTCTGACAATACAGAGA
* * **
104244891 CGCCAAATTTGCTTCTTGGATTTGC-TCCTCGTCAAATAC--GAAGA
128 CGCCAAA--T-CATCTTAGATTTGCTTCAACGT-AAATACGTGAA-A
* ** * *
104244935 TGCCAAAT--C-A-TCTTAGATCTGCTCTTTAACAATATAGAGATGGCAAATCTGCTATT-TTCG
1 -GCCAAATCGCTATTCTTCGATCTGCTCCCTAACAATACAGAGATGCCAAATCTG-T-TTCTTCG
* * * *
104244995 ATCTGCTCTCCGACAATATAGAGATGCCAAATCTGTTATCTTTGATCTGTTCTCTGCCAATACAG
63 ATCTGCTCTCTGACAATACAGAGATGCCAAATC---TATCTTTGATCTGCTCTCTGACAATACAG
* **
104245060 AGACACCAAATCATCTTAGATTTGCTTCAACGTAAACGCGTGAAA
125 AGACGCCAAATCATCTTAGATTTGCTTCAACGTAAATACGTGAAA
* *
104245105 GCCAAATCTGCTATATCTTCGATCTGCT-CCTCATA-AACACA-AGGATGCCAAATC---ATCTT
1 GCCAAATC-GCTAT-TCTTCGATCTGCTCCCT-A-ACAATACAGA-GATGCCAAATCTGTTTCTT
* * * * *
104245164 CGATTTGTTCTCTAACAAAACAGAGATGCCAAATCTGTCATCTTTGATTTGCTCTCTGACAATAC
61 CGATCTGCTCTCTGACAATACAGAGATGCCAAATC--T-ATCTTTGATCTGCTCTCTGACAATAC
*
104245229 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAATACGTGAAA
123 AGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAATACGTGAAA
* **
104245276 GCTAAATCAGCTATGTCTTCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATCTGTTTCTTCG
1 GCCAAATC-GCTAT-TCTTCGATCTGCTCCCTAAC-AATACAGAGATGCCAAATCTGTTTCTTCG
* * *
104245341 ATTTGTTCTCTGACAATACAGAGATGCCAAATC-ATCTTGGATCTGCT
63 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTATCTTTGATCTGCT
104245388 TCAGTGTAAA
Statistics
Matches: 372, Mismatches: 56, Indels: 51
0.78 0.12 0.11
Matches are distributed among these distances:
169 23 0.06
170 46 0.12
171 172 0.46
172 56 0.15
173 2 0.01
174 8 0.02
175 64 0.17
176 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (169 bp):
GCCAAATCGCTATTCTTCGATCTGCTCCCTAACAATACAGAGATGCCAAATCTGTTTCTTCGATC
TGCTCTCTGACAATACAGAGATGCCAAATCTATCTTTGATCTGCTCTCTGACAATACAGAGACGC
CAAATCATCTTAGATTTGCTTCAACGTAAATACGTGAAA
Found at i:104256826 original size:24 final size:23
Alignment explanation
Indices: 104256777--104256826 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
104256767 AAAAAAAACC
*
104256777 TTTTGAAATGAGATATTTTTTGT
1 TTTTGAAATGAGATATATTTTGT
*
104256800 TTTTGAAAATGATGATGTATTTT-T
1 TTTTG-AAATGA-GATATATTTTGT
104256824 TTT
1 TTT
104256827 AAAAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.22
24 10 0.43
25 8 0.35
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (23 bp):
TTTTGAAATGAGATATATTTTGT
Found at i:104257548 original size:17 final size:17
Alignment explanation
Indices: 104257526--104257565 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
104257516 ATAATATATA
* *
104257526 AAAATATCATATGGAGT
1 AAAATATAATATGGAAT
*
104257543 AAAATATAATATGTAAT
1 AAAATATAATATGGAAT
104257560 AAAATA
1 AAAATA
104257566 ATATGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (17 bp):
AAAATATAATATGGAAT
Found at i:104259257 original size:4 final size:4
Alignment explanation
Indices: 104259238--104259286 Score: 68
Period size: 4 Copynumber: 12.8 Consensus size: 4
104259228 CGTAAAAAAA
104259238 AAAT AAA- AAAGT -AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAT
1 AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
104259284 AAA
1 AAA
104259287 ATAATTTGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
3 7 0.17
4 34 0.83
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:104259291 original size:8 final size:7
Alignment explanation
Indices: 104259231--104259290 Score: 59
Period size: 8 Copynumber: 8.0 Consensus size: 7
104259221 TTTTAAGCGT
104259231 AAAA-AA
1 AAAATAA
104259237 AAAATAA
1 AAAATAA
104259244 AAAAGTAA
1 AAAA-TAA
*
104259252 TAAATAA
1 AAAATAA
104259259 ATAAATAA
1 A-AAATAA
104259267 ATAAATAA
1 A-AAATAA
104259275 ATAAATAA
1 A-AAATAA
104259283 TAAAATAA
1 -AAAATAA
104259291 TTTGTAGAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
6 4 0.08
7 9 0.19
8 34 0.71
9 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (7 bp):
AAAATAA
Found at i:104273719 original size:6 final size:6
Alignment explanation
Indices: 104273710--104273738 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
104273700 ATTTTATTCC
104273710 AAAATG AAAATG AAAATG AAAATG AAAAT
1 AAAATG AAAATG AAAATG AAAATG AAAAT
104273739 AGATAAATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:104284652 original size:14 final size:14
Alignment explanation
Indices: 104284633--104284660 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
104284623 TCCTTTAAGT
104284633 TTGAAAAAAAATTA
1 TTGAAAAAAAATTA
104284647 TTGAAAAAAAATTA
1 TTGAAAAAAAATTA
104284661 ATATCAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
TTGAAAAAAAATTA
Found at i:104284898 original size:62 final size:61
Alignment explanation
Indices: 104284738--104284956 Score: 320
Period size: 60 Copynumber: 3.6 Consensus size: 61
104284728 AGAAGAAATT
* *
104284738 TTTTTTTAAATTTCGAAT-AAAAATTAATATCAAAATTTGTAAGTTAGAAGAAAAACAAAG
1 TTTTTATAAAGTTCGAATAAAAAATTAATATCAAAATTTGTAAGTTAGAAGAAAAACAAAG
* * *
104284798 TTTTTA-AAAGTTCGAATAAAAAATTAATATCAAAATTTGAAAGTTAGAAGAAAAATAATG
1 TTTTTATAAAGTTCGAATAAAAAATTAATATCAAAATTTGTAAGTTAGAAGAAAAACAAAG
* * *
104284858 TTTTTATAAAATTTGAATAAAAAAATTAATATCAAAATTTGTAAGTTAGAAGAAAGACAAAG
1 TTTTTATAAAGTTCGAAT-AAAAAATTAATATCAAAATTTGTAAGTTAGAAGAAAAACAAAG
*
104284920 TTTTT-TAAAGTTCGAATAAAAAA-TAATATTAAAATTT
1 TTTTTATAAAGTTCGAATAAAAAATTAATATCAAAATTT
104284957 ATAACAGAAA
Statistics
Matches: 142, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
59 23 0.16
60 56 0.39
61 19 0.13
62 44 0.31
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.35
Consensus pattern (61 bp):
TTTTTATAAAGTTCGAATAAAAAATTAATATCAAAATTTGTAAGTTAGAAGAAAAACAAAG
Found at i:104292174 original size:20 final size:20
Alignment explanation
Indices: 104292149--104292187 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
104292139 AATCAACATG
104292149 TTAGTATTCTCTTAGGCCAT
1 TTAGTATTCTCTTAGGCCAT
104292169 TTAGTATTCTCTTAGGCCA
1 TTAGTATTCTCTTAGGCCA
104292188 AGATTGGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (20 bp):
TTAGTATTCTCTTAGGCCAT
Found at i:104298257 original size:33 final size:33
Alignment explanation
Indices: 104298215--104298280 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
104298205 AAACCCTCTG
104298215 GTTGTTGCATGTAAATATCCTCCTCAAGTTCTC
1 GTTGTTGCATGTAAATATCCTCCTCAAGTTCTC
104298248 GTTGTTGCATGTAAATATCCTCCTCAAGTTCTC
1 GTTGTTGCATGTAAATATCCTCCTCAAGTTCTC
104298281 CATGCAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (33 bp):
GTTGTTGCATGTAAATATCCTCCTCAAGTTCTC
Found at i:104304852 original size:17 final size:17
Alignment explanation
Indices: 104304793--104304852 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
104304783 TAATAAATTT
104304793 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
104304812 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
104304826 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
104304844 AAAATATAA
1 AAAATATAA
104304853 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:104305371 original size:18 final size:17
Alignment explanation
Indices: 104305348--104305467 Score: 141
Period size: 17 Copynumber: 6.9 Consensus size: 17
104305338 AAGATTGTAT
104305348 ATCATATCTAAGATTCCA
1 ATCATATCTAAGATT-CA
**
104305366 ATCATATCTAAGATTGT
1 ATCATATCTAAGATTCA
104305383 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATT-CA
* **
104305401 ATCATAACTAAGATTGT
1 ATCATATCTAAGATTCA
104305418 ATCATATCTAAGATTACA
1 ATCATATCTAAGATT-CA
* **
104305436 ATCATATTTAAGATTGT
1 ATCATATCTAAGATTCA
104305453 ATCATATCTAAGATT
1 ATCATATCTAAGATT
104305468 ACATATCATT
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
17 43 0.50
18 43 0.50
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (17 bp):
ATCATATCTAAGATTCA
Found at i:104305393 original size:35 final size:35
Alignment explanation
Indices: 104305335--104305476 Score: 221
Period size: 35 Copynumber: 4.0 Consensus size: 35
104305325 AATCATATCT
*
104305335 TCTAAGATTGTATATCATATCTAAGATTCCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTACAATCATA
*
104305372 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTACAATCATA
*
104305407 ACTAAGATTGTATCATATCTAAGATTACAATCATA
1 TCTAAGATTGTATCATATCTAAGATTACAATCATA
*
104305442 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTACA-ATCAT
104305477 TGAAGATTAT
Statistics
Matches: 99, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
35 84 0.85
36 5 0.05
37 10 0.10
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTACAATCATA
Found at i:104306076 original size:83 final size:83
Alignment explanation
Indices: 104305862--104306214 Score: 607
Period size: 83 Copynumber: 4.2 Consensus size: 83
104305852 TTCGATTTGT
* * *
104305862 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
104305927 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
104305945 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
*
104306010 ATTTGTTCCTTGTAAGCAT
65 ATTTGTTCCTTGTAAGCAC
* * *
104306029 AAGGATACCAAACCATCTTGAGTTTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
104306094 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
104306112 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
104306177 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
104306195 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
104306215 GATCTGCTTC
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 179 0.70
84 77 0.30
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:104306408 original size:83 final size:83
Alignment explanation
Indices: 104306257--104306582 Score: 521
Period size: 83 Copynumber: 3.9 Consensus size: 83
104306247 ATTTGCTATA
* * * * * * *
104306257 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGT-AGACATAAGAATG
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAG-CACAAGGATG
*
104306321 CCAAATCATCTTG-GATCTG
65 CCAAACCATCTTGAG-TCTG
* *
104306340 TTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATAC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
104306405 CAAACCATCTTGAGTCTG
66 CAAACCATCTTGAGTCTG
104306423 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
104306488 CAAACCATCTTGAGTCTG
66 CAAACCATCTTGAGTCTG
*
104306506 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGT
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
104306571 CAAACCATCTTG
66 CAAACCATCTTG
104306583 GATCTGCTTC
Statistics
Matches: 228, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
83 225 0.99
84 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (83 bp):
TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
CAAACCATCTTGAGTCTG
Found at i:104306482 original size:285 final size:285
Alignment explanation
Indices: 104305972--104306499 Score: 907
Period size: 285 Copynumber: 1.9 Consensus size: 285
104305962 CTTGAGTCTG
* ** *
104305972 TTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCATAAGGATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCATAAGAATAC
*
104306037 CAAACCATCTTGAGTTTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
66 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
*
104306102 TTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCA
131 TTGTAAGCACAAGGATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCA
104306167 ATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAA
196 ATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAA
104306232 ACATCTGAAGGTTAGATTTGCTATA
261 ACATCTGAAGGTTAGATTTGCTATA
* * * * *
104306257 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGT-AGACATAAGAATG
1 TTTGAGAACATCTGAGAGTCAAATCTGCAAGGTCCTCGATTTGTTCCTTGTAAG-CATAAGAATA
* *
104306321 CCAAATCATCTTG-GATCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTT
65 CCAAACCATCTTGAG-TCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTT
104306385 CCTTGTAAGCACAAGGATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTG
129 CCTTGTAAGCACAAGGATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTG
104306450 CAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
194 CAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
104306500 AGTCTGTTTG
Statistics
Matches: 228, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
284 3 0.01
285 225 0.99
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (285 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCATAAGAATAC
CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
TTGTAAGCACAAGGATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCA
ATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAA
ACATCTGAAGGTTAGATTTGCTATA
Found at i:104306636 original size:368 final size:367
Alignment explanation
Indices: 104305900--104306707 Score: 1402
Period size: 368 Copynumber: 2.2 Consensus size: 367
104305890 TGAGAACATT
* * * * * * * *
104305900 TGAGAATCATATCTGCAAGGTCCTCGACTTGTTCCTTGTAAGCACAAGGATGCCTAAACCATCTT
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAA-CACAAGAATGCC-AAATCATCTT
* *
104305965 -GAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCAT
64 GGA-TCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCAC
*
104306029 AAGGATACCAAACCATCTTGAGTTTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
128 AAGGATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
104306094 TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCA
193 TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCA
104306159 TATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTT
258 TATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTT
* *
104306224 CAGTATAAACATCTGAAGGTTAGATTTGCTATATTTGAGAACGTC
323 CAGTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
*
104306269 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAGACATAAGAATGCCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTA-ACACAAGAATGCCAAATCATCTTG
* *
104306334 GATCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCTTGTAAGCACAA
65 GATCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCACAA
104306399 GGATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
130 GGATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
104306464 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATA
195 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATA
*
104306529 TCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGTCAAACCATCTTGGATCTGCTTCA
260 TCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCA
104306594 GTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
325 GTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
*
104306637 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGT-AACACAAGAATGCCAAATCATCTTG
104306702 GATCTG
65 GATCTG
104306708 CTTCAGTATA
Statistics
Matches: 417, Mismatches: 19, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
368 369 0.88
369 47 0.11
370 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (367 bp):
TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAACACAAGAATGCCAAATCATCTTGG
ATCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCACAAG
GATACCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTT
GTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATAT
CTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAG
TATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
Found at i:104306721 original size:119 final size:119
Alignment explanation
Indices: 104306518--104307083 Score: 861
Period size: 119 Copynumber: 4.9 Consensus size: 119
104306508 TGAGAACATT
* * * * * *
104306518 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGTCAAACCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
104306583 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
* *
104306637 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
** * *
104306702 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTATTATATTTGAGAACGTT
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
* *
104306756 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAAAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
104306821 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAA-AACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTT-AAGAACGTC
*
104306875 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACAAAAGAATGCCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
104306940 GA------TC----T--ACATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
* *
104306982 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTATAAACACAAGAATGCCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
104307047 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
104307084 TTATCTTCGA
Statistics
Matches: 407, Mismatches: 26, Indels: 28
0.88 0.06 0.06
Matches are distributed among these distances:
106 1 0.00
107 97 0.24
109 1 0.00
113 4 0.01
117 1 0.00
119 302 0.74
120 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (119 bp):
TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTAAGAACGTC
Found at i:104307024 original size:107 final size:107
Alignment explanation
Indices: 104306838--104307051 Score: 383
Period size: 107 Copynumber: 2.0 Consensus size: 107
104306828 TTCAGTATAA
*
104306838 ACATCTGAAGGTTAGATCTGCTATATTTGAAAACGTCTGAGAGTCAAATCTGCTATGTCCTCGAT
1 ACATCTGAAGGTTAGATCTGCTATATTTGAAAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
*
104306903 TTGTTCCTTGTAAACAAAAGAATGCCAAATCATCTTGGATCT
66 TTGTTCCTTATAAACAAAAGAATGCCAAATCATCTTGGATCT
* *
104306945 ACATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
1 ACATCTGAAGGTTAGATCTGCTATATTTGAAAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
*
104307010 TTGTTCCTTATAAACACAAGAATGCCAAATCATCTTGGATCT
66 TTGTTCCTTATAAACAAAAGAATGCCAAATCATCTTGGATCT
104307052 GCTTCAGTAT
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 102 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (107 bp):
ACATCTGAAGGTTAGATCTGCTATATTTGAAAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
TTGTTCCTTATAAACAAAAGAATGCCAAATCATCTTGGATCT
Found at i:104308129 original size:21 final size:20
Alignment explanation
Indices: 104308104--104308169 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 20
104308094 CACCTTGGCC
104308104 TCTCTATCTTTTTCTTTTTTT
1 TCTCTAT-TTTTTCTTTTTTT
104308125 TCTCTTTATTTTTTTCTCTTTTTCT
1 TCTC--TA-TTTTTTCT-TTTTT-T
*
104308150 TTTCT-TTTTTTCTTTTTTT
1 TCTCTATTTTTTCTTTTTTT
104308169 T
1 T
104308170 TTGAAATAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
19 2 0.05
20 5 0.13
21 12 0.31
23 10 0.26
24 6 0.15
25 4 0.10
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (20 bp):
TCTCTATTTTTTCTTTTTTT
Found at i:104308138 original size:14 final size:13
Alignment explanation
Indices: 104308118--104308165 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
104308108 TATCTTTTTC
104308118 TTTTTTTTCTCTT
1 TTTTTTTTCTCTT
104308131 TATTTTTTTCTCTT
1 T-TTTTTTTCTCTT
*
104308145 TTTCTTTTCT-TT
1 TTTTTTTTCTCTT
104308157 TTTTCTTTT
1 TTTT-TTTT
104308166 TTTTTTGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 5 0.16
13 13 0.42
14 13 0.42
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTTCTCTT
Found at i:104308143 original size:35 final size:33
Alignment explanation
Indices: 104308104--104308171 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 33
104308094 CACCTTGGCC
104308104 TCTCTATCT-TTTTCTTTTTTTTCTCTTTATTTTTT
1 TCTCTATCTCTTTTC-TTTTTTTCT-TTT-TTTTTT
* *
104308139 TCTCTTTTTCTTTTCTTTTTTTCTTTTTTTTTT
1 TCTCTATCTCTTTTCTTTTTTTCTTTTTTTTTT
104308172 GAAATAGAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 6 0.20
34 3 0.10
35 16 0.53
36 5 0.17
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (33 bp):
TCTCTATCTCTTTTCTTTTTTTCTTTTTTTTTT
Found at i:104308145 original size:31 final size:32
Alignment explanation
Indices: 104308110--104308171 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
104308100 GGCCTCTCTA
104308110 TCTTTTTC-TTT-TTTTTCTCTTTATTTTTTTC
1 TCTTTTTCTTTTCTTTTTCTCTTT-TTTTTTTC
*
104308141 TCTTTTTCTTTTCTTTTTTTCTTTTTTTTTT
1 TCTTTTTCTTTTCTTTTTCTCTTTTTTTTTT
104308172 GAAATAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 8 0.29
32 10 0.36
33 10 0.36
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (32 bp):
TCTTTTTCTTTTCTTTTTCTCTTTTTTTTTTC
Found at i:104308155 original size:25 final size:22
Alignment explanation
Indices: 104308112--104308169 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
104308102 CCTCTCTATC
104308112 TTTTTCTTTTTTTTCTCTTTATT
1 TTTTTCTTTTTTTTCTCTTT-TT
*
104308135 TTTTTC-TCTTTTTCT-TTTCTT
1 TTTTTCTTTTTTTTCTCTTT-TT
104308156 TTTTTCTTTTTTTT
1 TTTTTCTTTTTTTT
104308170 TTGAAATAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.35
22 14 0.45
23 6 0.19
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTCTTTTTTTTCTCTTTTT
Found at i:104308160 original size:8 final size:8
Alignment explanation
Indices: 104308112--104308168 Score: 50
Period size: 8 Copynumber: 7.6 Consensus size: 8
104308102 CCTCTCTATC
104308112 TTTTTCTT
1 TTTTTCTT
*
104308120 TTTTT-TC
1 TTTTTCTT
* *
104308127 TCTTTATT
1 TTTTTCTT
*
104308135 TTTTTCTC
1 TTTTTCTT
104308143 TTTTTC--
1 TTTTTCTT
104308149 -TTTTCTT
1 TTTTTCTT
104308156 TTTTTCTT
1 TTTTTCTT
104308164 TTTTT
1 TTTTT
104308169 TTTGAAATAG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
5 5 0.13
7 5 0.13
8 29 0.74
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTCTT
Found at i:104314004 original size:17 final size:17
Alignment explanation
Indices: 104313945--104314004 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
104313935 TAATAAATTT
104313945 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
104313964 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
104313978 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
104313996 AAAATATAA
1 AAAATATAA
104314005 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:104314521 original size:18 final size:17
Alignment explanation
Indices: 104314498--104314617 Score: 141
Period size: 17 Copynumber: 6.9 Consensus size: 17
104314488 AAGATTGTAT
104314498 ATCATATCTAAGATTCCA
1 ATCATATCTAAGATT-CA
**
104314516 ATCATATCTAAGATTGT
1 ATCATATCTAAGATTCA
*
104314533 ATCATACCTAAGATTGCA
1 ATCATATCTAAGATT-CA
**
104314551 ATCATATCTAAGATTGT
1 ATCATATCTAAGATTCA
104314568 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATT-CA
* **
104314586 ATCATATTTAAGATTGT
1 ATCATATCTAAGATTCA
104314603 ATCATATCTAAGATT
1 ATCATATCTAAGATT
104314618 ACATATCATT
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
17 43 0.50
18 43 0.50
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (17 bp):
ATCATATCTAAGATTCA
Found at i:104314544 original size:35 final size:35
Alignment explanation
Indices: 104314485--104314626 Score: 221
Period size: 35 Copynumber: 4.0 Consensus size: 35
104314475 AATCATATCT
*
104314485 TCTAAGATTGTATATCATATCTAAGATTCCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
104314522 TCTAAGATTGTATCATACCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
104314557 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
104314592 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
104314627 TGAAGATTAT
Statistics
Matches: 99, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
35 84 0.85
36 5 0.05
37 10 0.10
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:104326644 original size:29 final size:28
Alignment explanation
Indices: 104326605--104326687 Score: 123
Period size: 27 Copynumber: 3.0 Consensus size: 28
104326595 CACTTTGTGC
104326605 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
104326634 TATTCTGGTGTGTTTGGGAGGATT-TAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
104326661 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
104326688 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 24 0.49
28 7 0.14
29 18 0.37
ACGTcount: A:0.18, C:0.04, G:0.31, T:0.47
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:104326668 original size:27 final size:26
Alignment explanation
Indices: 104326609--104326701 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 26
104326599 TTGTGCTATT
*
104326609 CTGGTGTGTTTTGGATGGATTATATTATT
1 CTGGTGTGTTTTGGA-GGATT-TA-TATA
*
104326638 CTGGTGTGTTTGGGAGGATTTATGATA
1 CTGGTGTGTTTTGGAGGATTTAT-ATA
104326665 CTGGTGTGTTTTGGAGGA--T-TATA
1 CTGGTGTGTTTTGGAGGATTTATATA
104326688 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
104326702 TTGGACATTT
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 17 0.28
24 1 0.02
25 1 0.02
26 1 0.02
27 21 0.35
28 5 0.08
29 14 0.23
ACGTcount: A:0.15, C:0.04, G:0.34, T:0.46
Consensus pattern (26 bp):
CTGGTGTGTTTTGGAGGATTTATATA
Found at i:104326688 original size:23 final size:25
Alignment explanation
Indices: 104326609--104326701 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 25
104326599 TTGTGCTATT
104326609 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGATTATA-TA
*
104326636 TTCTGGTGTGTTTGGGAGGATTTATGATA
1 --CTGGTGTGTTTTGGAGGA-TTAT-ATA
104326665 CTGGTGTGTTTTGGAGGA-T-TATA
1 CTGGTGTGTTTTGGAGGATTATATA
104326688 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
104326702 TTGGACATTT
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
23 17 0.28
24 1 0.02
25 1 0.02
27 17 0.28
28 3 0.05
29 20 0.33
30 1 0.02
ACGTcount: A:0.15, C:0.04, G:0.34, T:0.46
Consensus pattern (25 bp):
CTGGTGTGTTTTGGAGGATTATATA
Found at i:104326920 original size:23 final size:22
Alignment explanation
Indices: 104326890--104326975 Score: 72
Period size: 23 Copynumber: 4.0 Consensus size: 22
104326880 ACTTTACTGA
104326890 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TTATGTGTCGTATT
* *
104326913 TCAGGCACATTGTGTGTCGCA--
1 TCAGGCAC-TTATGTGTCGTATT
* * * *
104326934 GCAGGCACCT-CGTGT-GTCTT
1 TCAGGCACTTATGTGTCGTATT
104326954 TCAGGCACTTATGTGTCGTATT
1 TCAGGCACTTATGTGTCGTATT
104326976 CTGATCAGGT
Statistics
Matches: 47, Mismatches: 12, Indels: 9
0.69 0.18 0.13
Matches are distributed among these distances:
18 1 0.02
19 4 0.09
20 9 0.19
21 11 0.23
22 4 0.09
23 18 0.38
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (22 bp):
TCAGGCACTTATGTGTCGTATT
Found at i:104326969 original size:21 final size:20
Alignment explanation
Indices: 104326890--104326969 Score: 52
Period size: 21 Copynumber: 3.8 Consensus size: 20
104326880 ACTTTACTGA
*
104326890 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TT-TGTGT-GTCTT
* **
104326913 TCAGGCACATTGTGTGTCGCA
1 TCAGGCACTTTGTGTGTC-TT
* * *
104326934 GCAGGCACCTCGTGTGTCTT
1 TCAGGCACTTTGTGTGTCTT
104326954 TCAGGCACTTATGTGT
1 TCAGGCACTT-TGTGT
104326970 CGTATTCTGA
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
20 10 0.23
21 24 0.56
22 1 0.02
23 8 0.19
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.35
Consensus pattern (20 bp):
TCAGGCACTTTGTGTGTCTT
Found at i:104333549 original size:27 final size:27
Alignment explanation
Indices: 104333519--104333604 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 27
104333509 TTTTGCCAAC
104333519 ACCAAACATGATCTCAGTCTAATCAAA
1 ACCAAACATGATCTCAGTCTAATCAAA
* * *
104333546 ACC-AAC-TCAT-TACA-TCTCATAGCCAAC
1 ACCAAACATGATCT-CAGTCT-A-A-TCAAA
104333573 ACCAAACATGATCTCAGTCTAATCAAA
1 ACCAAACATGATCTCAGTCTAATCAAA
104333600 ACCAA
1 ACCAA
104333605 CTCATTACAT
Statistics
Matches: 45, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
24 4 0.09
25 6 0.13
26 4 0.09
27 17 0.38
28 4 0.09
29 6 0.13
30 4 0.09
ACGTcount: A:0.43, C:0.30, G:0.06, T:0.21
Consensus pattern (27 bp):
ACCAAACATGATCTCAGTCTAATCAAA
Found at i:104333563 original size:30 final size:30
Alignment explanation
Indices: 104333529--104333618 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 30
104333519 ACCAAACATG
104333529 ATCTCAGTCTAATCAAAACCAACTCATTAC
1 ATCTCAGTCTAATCAAAACCAACTCATTAC
** * * *
104333559 ATCTCA---TAGCCAACACCAA-ACA-T-G
1 ATCTCAGTCTAATCAAAACCAACTCATTAC
104333583 ATCTCAGTCTAATCAAAACCAACTCATTAC
1 ATCTCAGTCTAATCAAAACCAACTCATTAC
104333613 ATCTCA
1 ATCTCA
104333619 TACATTCAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
24 6 0.14
25 1 0.02
26 2 0.05
27 20 0.45
28 2 0.05
29 1 0.02
30 12 0.27
ACGTcount: A:0.40, C:0.31, G:0.04, T:0.24
Consensus pattern (30 bp):
ATCTCAGTCTAATCAAAACCAACTCATTAC
Found at i:104333595 original size:54 final size:54
Alignment explanation
Indices: 104333513--104333620 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
104333503 TTTCAATTTT
104333513 GCCAACACCAAACATGATCTCAGTCTAATCAAAACCAACTCATTACATCTCATA
1 GCCAACACCAAACATGATCTCAGTCTAATCAAAACCAACTCATTACATCTCATA
104333567 GCCAACACCAAACATGATCTCAGTCTAATCAAAACCAACTCATTACATCTCATA
1 GCCAACACCAAACATGATCTCAGTCTAATCAAAACCAACTCATTACATCTCATA
104333621 CATTCAAATA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.41, C:0.31, G:0.06, T:0.22
Consensus pattern (54 bp):
GCCAACACCAAACATGATCTCAGTCTAATCAAAACCAACTCATTACATCTCATA
Found at i:104336380 original size:13 final size:13
Alignment explanation
Indices: 104336362--104336389 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
104336352 ATAAAATTGG
104336362 AAAGATGATAAAT
1 AAAGATGATAAAT
104336375 AAAGATGATAAAT
1 AAAGATGATAAAT
104336388 AA
1 AA
104336390 TAAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:104339739 original size:46 final size:45
Alignment explanation
Indices: 104339681--104339856 Score: 137
Period size: 46 Copynumber: 3.8 Consensus size: 45
104339671 GGGTTATTGT
* *
104339681 GAGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTA-GA
* * *
104339727 GAGCCAGTGTAAGACCATATCTGGGACATCGTAT-GG--GCATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-AGA
* * * *
104339772 CGAGTGCTAGTGTAAGACATGTCTGGGACGTGCATCGGCCTC--GAGA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAGA
*
104339818 CGTAAGTCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
104339857 TATGAGATGT
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
45 6 0.06
46 55 0.52
47 28 0.27
48 15 0.14
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAGA
Found at i:104342889 original size:16 final size:16
Alignment explanation
Indices: 104342841--104342892 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
104342831 TGTATTTACT
104342841 TATATTTTA-AGTATAA
1 TATATTTTATA-TATAA
*
104342857 GATATTTTATATATAA
1 TATATTTTATATATAA
104342873 TATATTATTATAT-TAA
1 TATATT-TTATATATAA
104342889 TATA
1 TATA
104342893 AATTAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 25 0.78
17 7 0.22
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (16 bp):
TATATTTTATATATAA
Found at i:104342934 original size:23 final size:23
Alignment explanation
Indices: 104342890--104342934 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
104342880 TTATATTAAT
* *
104342890 ATAAATTAATAATTAAATAAAGC
1 ATAAAATAATAATTAAAGAAAGC
104342913 ATAAAATAATAA-TAAGAGAAAG
1 ATAAAATAATAATTAA-AGAAAG
104342935 AAAAGAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.24
Consensus pattern (23 bp):
ATAAAATAATAATTAAAGAAAGC
Found at i:104346205 original size:27 final size:27
Alignment explanation
Indices: 104346166--104346370 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
104346156 TATTTGAGTC
* * *
104346166 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
104346193 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
104346220 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
104346247 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
104346275 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
104346302 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
104346329 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
104346356 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
104346371 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:104351199 original size:27 final size:27
Alignment explanation
Indices: 104351168--104351344 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
104351158 TATATTGAGC
* * *
104351168 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
104351195 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
104351222 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
104351250 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
104351277 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
104351304 CGCACACTTAGTGCAACATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
104351330 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
104351345 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 15 0.12
27 90 0.70
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:104351260 original size:55 final size:54
Alignment explanation
Indices: 104351168--104351344 Score: 205
Period size: 55 Copynumber: 3.3 Consensus size: 54
104351158 TATATTGAGC
* * * * *
104351168 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
104351222 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
104351277 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTC-AAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
104351330 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
104351345 GTACAATTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
53 16 0.15
54 43 0.41
55 45 0.43
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:104351307 original size:82 final size:80
Alignment explanation
Indices: 104351189--104351343 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
104351179 TGCTATATAA
* *
104351189 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-AA-TCGCA
104351254 CACTTAGTGCCGCATGG
64 CACTTAGTGCCGCATGG
* * **
104351271 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCAC
104351335 ACTTAGTGC
65 ACTTAGTGC
104351344 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
81 3 0.05
82 48 0.73
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCACA
CTTAGTGCCGCATGG
Found at i:104351910 original size:13 final size:13
Alignment explanation
Indices: 104351892--104351916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104351882 TACTAAATTT
104351892 TCATGGATTCAAG
1 TCATGGATTCAAG
104351905 TCATGGATTCAA
1 TCATGGATTCAA
104351917 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:104352713 original size:21 final size:20
Alignment explanation
Indices: 104352672--104352714 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
104352662 TATTCATCCT
* *
104352672 TTCTTTTCTTTTTAATTCAC
1 TTCTTTTATTTTTAATCCAC
104352692 TTCTTTTATTTTCTAATCCAC
1 TTCTTTTATTTT-TAATCCAC
104352713 TT
1 TT
104352715 ACCAATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.63
Consensus pattern (20 bp):
TTCTTTTATTTTTAATCCAC
Found at i:104357433 original size:27 final size:27
Alignment explanation
Indices: 104357394--104357598 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
104357384 ATTTTTAGTC
* * *
104357394 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
104357421 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
104357448 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
104357475 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
104357503 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
104357530 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
104357557 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
104357584 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
104357599 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:104362831 original size:45 final size:45
Alignment explanation
Indices: 104362767--104362860 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
104362757 ATAGCTTGGC
104362767 TATGGCAATCAATAGAGTCCGTCAAGACATTAAACATGAGAATAT
1 TATGGCAATCAATAGAGTCCGTCAAGACATTAAACATGAGAATAT
104362812 TATGGCAATCAATAGAGTCCGTCAAGACATTAAACATGAGAATAT
1 TATGGCAATCAATAGAGTCCGTCAAGACATTAAACATGAGAATAT
104362857 TATG
1 TATG
104362861 TAAGACCATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (45 bp):
TATGGCAATCAATAGAGTCCGTCAAGACATTAAACATGAGAATAT
Found at i:104362972 original size:27 final size:28
Alignment explanation
Indices: 104362901--104362972 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 28
104362891 AGAGCTCGTC
*
104362901 AGGACAGTAAACAT-GGGATAGTCCACT
1 AGGACAATAAACATGGGGATAGTCCACT
* * **
104362928 AGGAAAATAAACACGGGGA-AGTCCGTT
1 AGGACAATAAACATGGGGATAGTCCACT
104362955 AGGACAATAAACATGGGG
1 AGGACAATAAACATGGGG
104362973 CATGAAGAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
27 33 0.89
28 4 0.11
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (28 bp):
AGGACAATAAACATGGGGATAGTCCACT
Found at i:104377583 original size:30 final size:30
Alignment explanation
Indices: 104377522--104377583 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
104377512 ATATATAAAA
* *
104377522 AATAATAAAACATATAATTTGAAATTAATT
1 AATAATAAAACATATAATATGAAAATAATT
* *
104377552 AATAATAACATATATAATATGTAAAAT-ATT
1 AATAATAAAACATATAATATG-AAAATAATT
104377582 AA
1 AA
104377584 AACAAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (30 bp):
AATAATAAAACATATAATATGAAAATAATT
Found at i:104380461 original size:20 final size:20
Alignment explanation
Indices: 104380433--104380483 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
104380423 ATATAAAATA
*
104380433 ATTACTTTTATAATAATATTT
1 ATTA-TTTTATAAAAATATTT
*
104380454 ATTATTTTAAAAAAATATTT
1 ATTATTTTATAAAAATATTT
* *
104380474 TTTAATTTAT
1 ATTATTTTAT
104380484 CTATTTTATC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTATTTTATAAAAATATTT
Found at i:104381806 original size:5 final size:5
Alignment explanation
Indices: 104381796--104381820 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
104381786 AATTTTCACC
104381796 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
104381821 GAGAAGGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:104382142 original size:87 final size:87
Alignment explanation
Indices: 104381988--104382148 Score: 205
Period size: 87 Copynumber: 1.9 Consensus size: 87
104381978 GATTTCGCCA
* * * * * * *
104381988 TTCCTAGTACTGACATTTCGTGCAGACTTCAAGCCTGCTTGACATGTGTTTCATTTTGGATTGCC
1 TTCCTAGTACTAACATTTCGTGCAGACTTCAAGACTGCTGGACACGTGTTTCACTCTGGATTCCC
*
104382053 TACGGAGCATGCGGTCCTCTTG
66 TACGAAGCATGCGGTCCTCTTG
* ** * *
104382075 TTCCTAGTACTAACATTTTGTGTGGACTTCAGGACTGCTGGACACGTGTTTCACTCTGGGTTCCC
1 TTCCTAGTACTAACATTTCGTGCAGACTTCAAGACTGCTGGACACGTGTTTCACTCTGGATTCCC
104382140 TACGAAGCA
66 TACGAAGCA
104382149 CACGGTCCCC
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
87 61 1.00
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (87 bp):
TTCCTAGTACTAACATTTCGTGCAGACTTCAAGACTGCTGGACACGTGTTTCACTCTGGATTCCC
TACGAAGCATGCGGTCCTCTTG
Found at i:104386674 original size:50 final size:50
Alignment explanation
Indices: 104386599--104387136 Score: 569
Period size: 50 Copynumber: 10.7 Consensus size: 50
104386589 GTGAGTCAAG
* *
104386599 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
* * * * *
104386649 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-G-TTAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATT--GTTAGGTCACA
* * * * * *
104386700 TGTGTAGTACTAAATGTAGGCTACTACGTGTATCAGATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
* * *
104386750 TATGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
* * * * * * *
104386800 TGTGTAGTATTAAGTGCAAGCTACTATGTGTACCCA-ATAGCTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTG-TTAGGTCACA
* * * *
104386851 TGTGTAGTACCAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
* * *
104386901 TGTGTAGTATTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
**** * * * * *
104386951 TGTGTAGTACTAAGTGCAGGCTACTATACATACCCGATAGCTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCACA
* * * * **
104387002 TGTATAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
*
104387052 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
* *
104387102 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
104387137 AAGAGCTTCA
Statistics
Matches: 398, Mismatches: 81, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.01
50 280 0.70
51 115 0.29
52 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACA
Found at i:104386774 original size:101 final size:101
Alignment explanation
Indices: 104386599--104387136 Score: 534
Period size: 101 Copynumber: 5.3 Consensus size: 101
104386589 GTGAGTCAAG
* * * *
104386599 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * *
104386664 GCAGGCTACTATGCGTACTC-GTTAACTTCGATCACA
66 GCAGGCTACTACGCGTACTCAGAT-GCTTAGATCACA
* * * * * *
104386700 TGTGTAGTACTAAATGTAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGCAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * *
104386765 GCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCGCA
66 GCAGGCTACTACGCGTACTCAGA-TGCTTAGATCACA
* * * * * * *
104386800 TGTGTAGTATTAAGTGCAAGCTACTATGTGTACCCA-ATAGCTTCGATCACGTGTGTAGTACCAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGAT-GGTTAGGTCACGTGTGTAGTACTAA
* * * *
104386864 GTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACG
64 GTGCAGGCTACTACGCGTACTCAGATGCTTAGATCACA
* * * * *
104386901 TGTGTAGTATTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
** * * * *
104386966 GCAGGCTACTATACATAC-CCGATAGCTTCGATCACG
66 GCAGGCTACTACGCGTACTCAGAT-GCTTAGATCACA
* * * *
104387002 TGTATAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * *
104387067 GCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCGCA
66 GCAGGCTACTACGCGTACTCAGA-TGCTTAGATCACA
* *
104387102 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
104387137 AAGAGCTTCA
Statistics
Matches: 356, Mismatches: 71, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
100 117 0.33
101 237 0.67
102 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGCGTACTCAGATGCTTAGATCACA
Found at i:104386872 original size:151 final size:151
Alignment explanation
Indices: 104386593--104387145 Score: 872
Period size: 151 Copynumber: 3.7 Consensus size: 151
104386583 TCCGTTGTGA
* *
104386593 GTCAAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
* ** * * * *
104386658 CTAAGTGCAGGCTACTATGCGTACTCGTTAACTTCGATCACATGTGTAGTACTAAATGTAGGCTA
66 CTAAGTGCAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
*
104386723 CTACGTGTATCAGATGGTTAA
131 CTACGTGTATCAGATGGTTAG
* *
104386744 GTCACGTATGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
* * * *
104386809 TTAAGTGCAAGCTACTATGTGTACCCAATAGCTTCGATCACGTGTGTAGTACCAAGTGCAGGCTA
66 CTAAGTGCAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
104386874 CTACGTGTATCAGATGGTTAG
131 CTACGTGTATCAGATGGTTAG
* *
104386895 GTCACGTGTGTAGTATTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
* * * *
104386960 CTAAGTGCAGGCTACTATACATACCCGATAGCTTCGATCACGTGTATAGTACTAAGTGCAGGCTA
66 CTAAGTGCAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
*
104387025 CTATGTGTATCAGATGGTTAG
131 CTACGTGTATCAGATGGTTAG
*
104387046 GTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
* *
104387111 CTAAGTGCAGGCTACTATGCGTACCAAAGAGCTTC
66 CTAAGTGCAGGCTACTATGCGTACCCAATAGCTTC
104387146 AGTTACAAGG
Statistics
Matches: 365, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 365 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
CTACGTGTATCAGATGGTTAG
Found at i:104391150 original size:71 final size:71
Alignment explanation
Indices: 104391027--104391158 Score: 160
Period size: 71 Copynumber: 1.9 Consensus size: 71
104391017 ACATAGGTTT
* * * * *
104391027 AGCTCGAACGAGTAACCTGATTTCGTTTTATAGGTTTAGCTCGGACGAGTAACCTGACACTAATA
1 AGCTCGAACGAGCAACCTGAGTTCGTTTTAAAGGTTTAGCCCGGACGAGTAACATGA-ACTAATA
104391092 TATATTC
65 TATATTC
* * *
104391099 AGCTCGAATGAGCAACCTGAGGTT-G-TTTAAAGGTTTATCCCGGACGGGTAACATGAACTA
1 AGCTCGAACGAGCAACCTGA-GTTCGTTTTAAAGGTTTAGCCCGGACGAGTAACATGAACTA
104391159 TACATTACAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
70 4 0.08
71 26 0.51
72 19 0.37
73 2 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (71 bp):
AGCTCGAACGAGCAACCTGAGTTCGTTTTAAAGGTTTAGCCCGGACGAGTAACATGAACTAATAT
ATATTC
Found at i:104399144 original size:13 final size:13
Alignment explanation
Indices: 104399118--104399170 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
104399108 GACGCGATCC
*
104399118 ACACGGGGGTGTG
1 ACACGGGCGTGTG
*
104399131 ACATGGGCGTGTG
1 ACACGGGCGTGTG
*
104399144 ACACGGACGTGTG
1 ACACGGGCGTGTG
104399157 ACACGGGCGTGTG
1 ACACGGGCGTGTG
104399170 A
1 A
104399171 GATTAGTGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.45, T:0.17
Consensus pattern (13 bp):
ACACGGGCGTGTG
Found at i:104404888 original size:15 final size:15
Alignment explanation
Indices: 104404868--104404899 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
104404858 CTCTGAAATG
104404868 AATAGTAAATTATAT
1 AATAGTAAATTATAT
104404883 AATAGTAAATTATAT
1 AATAGTAAATTATAT
104404898 AA
1 AA
104404900 ATTAACTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
AATAGTAAATTATAT
Found at i:104411327 original size:69 final size:69
Alignment explanation
Indices: 104411237--104412190 Score: 671
Period size: 69 Copynumber: 13.8 Consensus size: 69
104411227 AAGTTTGTAA
* * ** * *
104411237 CTCTTGCTAATTGTGTTGGAGGCTGCAATTTTAATCCTACGAGCCTTATTATGATAGCTGGGAGC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
104411302 TTTG
66 TTTG
* ** * * * * **
104411306 CTCTCGCTAACTGTGTTGGAGGAT-ATGATTTAATCCTGTGAGCCTTAGTATGACAACTAAGAGC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
104411370 TTTG
66 TTTG
* * * * * * * *
104411374 CTTTCGCTAACTATGTTGGAGGCTACAGTTTTAATCCCGCAAGCCTTAGTATGACAGTTGGGAGC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
104411439 TTTG
66 TTTG
* * * * * *
104411443 CTCTCGCTAACTATGTTAGAGGCTGTGGTTTTAATCCTGCAAGCCTTAGTATGACAGTTGGGAGC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
104411508 -TTG
66 TTTG
* * * ** * * * * * * * * *
104411511 CTCTTGCTAACCGTGTTGGAGCCTATGATTTTTTATCCTACTAGTCTTGTTATGATAGTTGAGAG
1 CTCTCGCTAACTGTGTTGGAGGCTGCG-GTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAG
*
104411576 CTTTA
65 CTTTG
* * * * * * *** * * *
104411581 CTTTCGTTAACTGTGTTGAAGGTTACGATTTTAATCCTATAAGCTTTAGTATGATAGCTGGGAGC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
104411646 TTTG
66 TTTG
* * * * * * * * *
104411650 ATCTCACTGACTATGTTAGAGGTTGTGGTTTTAATCCTGCGAGCCCTAATT-GGACAGCTGGGAG
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAG-CCTTATTATGACAGCTGGGAG
104411714 CTTTG
65 CTTTG
* * * * * * * * *
104411719 CTATCGTTAACTGTGTTAGA-GCTACGATTTTAATCCTGCGAGCCTTAGTATGATAGTTGGGAAC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
104411783 TTTG
66 TTTG
* * * * * * * * ** * * *
104411787 CTCTTGTTAAATATGTTAGAGGTTGTGGTTTTTTATCCTATGATCCTTATTATAAGAGCTGGGAG
1 CTCTCGCTAACTGTGTTGGAGGCTGCGG-TTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAG
104411852 CTTTG
65 CTTTG
* * * ** * * *
104411857 CTCTCACTAATTGTGTTGGAAGCTATGGTTTTTAAT-CTCGCGACCCTT-TATACGACAACTGGG
1 CTCTCGCTAACTGTGTTGGAGGCTGCGG-TTTTAATCCT-GCGAGCCTTAT-TATGACAGCTGGG
*
104411920 AG-TTCTT
63 AGCTT-TG
* * * * * * * *
104411927 CTCTCGCTAATTATGTTGGAAGCTACAGTTTTTATCCTACGAGCCTTATTATGACAGCTGGTAGC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
*
104411992 TTTT
66 TTTG
* * * ** * **
104411996 CTCTCGCTAACTATGTTAGAGGGTGCAATTTTTTATCCTGCGAGCCTTATTATGACAAATGGGAG
1 CTCTCGCTAACTGTGTTGGAGGCTGC-GGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAG
104412061 CTTTG
65 CTTTG
* * * ** *
104412066 CTCTTGCTAACTGTGTTGGTGGCTGTGGTTTTAATCCTGCGAGCCTTATTATGACAAATGAGAGC
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
104412131 TTTG
66 TTTG
* * * * *
104412135 CTCTTGCTAACTGTGTTGGGGGCTACAGTTTTAATCCTGCGAGCCTTAGTATGACA
1 CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACA
104412191 CAAATGTCGT
Statistics
Matches: 697, Mismatches: 174, Indels: 28
0.78 0.19 0.03
Matches are distributed among these distances:
67 5 0.01
68 126 0.18
69 379 0.54
70 187 0.27
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (69 bp):
CTCTCGCTAACTGTGTTGGAGGCTGCGGTTTTAATCCTGCGAGCCTTATTATGACAGCTGGGAGC
TTTG
Found at i:104411577 original size:138 final size:139
Alignment explanation
Indices: 104411237--104412190 Score: 752
Period size: 138 Copynumber: 6.9 Consensus size: 139
104411227 AAGTTTGTAA
* * * *
104411237 CTCTTGCTAATTGTGTTGGAGGC--TGCAATTTTAATCCTACGAGCCTTATTATGATAGCTGGGA
1 CTCTTGCTAACTATGTTGGAGGCTATG-AGTTTTAATCCTACGAGCCTTATTATGACAGCTGGGA
* * * * *
104411300 GCTTTGCTCTCGCTAACTGTGTTGGAGGATA-TGATTTAATCCTGTGAGCCTTAGTATGACAACT
65 GCTTTGCTCTCGCTAACTGTGTTAGAGGCTACGGTTTTAATCCTGCGAGCCTTAGTATGACAACT
**
104411364 AAGAGCTTTG
130 GGGAGCTTTG
* ** * * *
104411374 CT-TTCGCTAACTATGTTGGAGGCTA-CAGTTTTAATCCCGCAAGCCTTAGTATGACAGTTGGGA
1 CTCTT-GCTAACTATGTTGGAGGCTATGAGTTTTAATCCTACGAGCCTTATTATGACAGCTGGGA
* ** * **
104411437 GCTTTGCTCTCGCTAACTATGTTAGAGGCTGTGGTTTTAATCCTGCAAGCCTTAGTATGACAGTT
65 GCTTTGCTCTCGCTAACTGTGTTAGAGGCTACGGTTTTAATCCTGCGAGCCTTAGTATGACAACT
104411502 GGGAGC-TTG
130 GGGAGCTTTG
** * * * * * * * * *
104411511 CTCTTGCTAACCGTGTTGGAGCCTATGATTTTTTATCCTACTAGTCTTGTTATGATAGTTGAGAG
1 CTCTTGCTAACTATGTTGGAGGCTATGAGTTTTAATCCTACGAGCCTTATTATGACAGCTGGGAG
* * * * * *** * * *
104411576 CTTTACTTTCGTTAACTGTGTT-GAAGGTTACGATTTTAATCCTATAAGCTTTAGTATGATAGCT
66 CTTTGCTCTCGCTAACTGTGTTAG-AGGCTACGGTTTTAATCCTGCGAGCCTTAGTATGACAACT
104411640 GGGAGCTTTG
130 GGGAGCTTTG
* ** * * * * * * *
104411650 ATCTCACTGACTATGTTAGAGGTTGTG-GTTTTAATCCTGCGAGCCCTAATT-GGACAGCTGGGA
1 CTCTTGCTAACTATGTTGGAGGCTATGAGTTTTAATCCTACGAG-CCTTATTATGACAGCTGGGA
* * * * **
104411713 GCTTTGCTATCGTTAACTGTGTTAGA-GCTACGATTTTAATCCTGCGAGCCTTAGTATGATAGTT
65 GCTTTGCTCTCGCTAACTGTGTTAGAGGCTACGGTTTTAATCCTGCGAGCCTTAGTATGACAACT
*
104411777 GGGAACTTTG
130 GGGAGCTTTG
* * * * * * * * * *
104411787 CTCTTGTTAAATATGTTAGAGGTTGTG-GTTTTTTATCCTATGATCCTTATTATAAGAGCTGGGA
1 CTCTTGCTAACTATGTTGGAGGCTATGAG-TTTTAATCCTACGAGCCTTATTATGACAGCTGGGA
* * * * * * *
104411851 GCTTTGCTCTCACTAATTGTGTTGGAAGCTATGGTTTTTAAT-CTCGCGACCCTTTA-TACGACA
65 GCTTTGCTCTCGCTAACTGTGTTAGAGGCTACGG-TTTTAATCCT-GCGAGCC-TTAGTATGACA
*
104411914 ACTGGGAG-TTCTT
127 ACTGGGAGCTT-TG
* * * * * *
104411927 CTCTCGCTAATTATGTTGGAAGCTA-CAGTTTTTATCCTACGAGCCTTATTATGACAGCTGGTAG
1 CTCTTGCTAACTATGTTGGAGGCTATGAGTTTTAATCCTACGAGCCTTATTATGACAGCTGGGAG
* * * * ** * * *
104411991 CTTTTCTCTCGCTAACTATGTTAGAGGGTGCAATTTTTTATCCTGCGAGCCTTATTATGACAAAT
66 CTTTGCTCTCGCTAACTGTGTTAGAGGCTAC-GGTTTTAATCCTGCGAGCCTTAGTATGACAACT
104412056 GGGAGCTTTG
130 GGGAGCTTTG
* * * * ** *
104412066 CTCTTGCTAACTGTGTTGGTGGCTGTG-GTTTTAATCCTGCGAGCCTTATTATGACAAATGAGAG
1 CTCTTGCTAACTATGTTGGAGGCTATGAGTTTTAATCCTACGAGCCTTATTATGACAGCTGGGAG
* * * *
104412130 CTTTGCTCTTGCTAACTGTGTTGGGGGCTACAGTTTTAATCCTGCGAGCCTTAGTATGACA
66 CTTTGCTCTCGCTAACTGTGTTAGAGGCTACGGTTTTAATCCTGCGAGCCTTAGTATGACA
104412191 CAAATGTCGT
Statistics
Matches: 635, Mismatches: 159, Indels: 45
0.76 0.19 0.05
Matches are distributed among these distances:
136 2 0.00
137 167 0.26
138 229 0.36
139 187 0.29
140 47 0.07
141 3 0.00
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (139 bp):
CTCTTGCTAACTATGTTGGAGGCTATGAGTTTTAATCCTACGAGCCTTATTATGACAGCTGGGAG
CTTTGCTCTCGCTAACTGTGTTAGAGGCTACGGTTTTAATCCTGCGAGCCTTAGTATGACAACTG
GGAGCTTTG
Found at i:104422790 original size:38 final size:39
Alignment explanation
Indices: 104422742--104422819 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 39
104422732 TCCCTATCCA
* * * *
104422742 TACTTTAAATCTGTTTTATTTTTTAGACTTAATA-TTTT
1 TACTTCAAATCTGTCTCATTTTTTAAACTTAATACTTTT
*
104422780 TACTTCAAATCTGTCTCATTTTTTAAATTTAATACTTTT
1 TACTTCAAATCTGTCTCATTTTTTAAACTTAATACTTTT
104422819 T
1 T
104422820 GTTCAAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
38 29 0.85
39 5 0.15
ACGTcount: A:0.27, C:0.12, G:0.04, T:0.58
Consensus pattern (39 bp):
TACTTCAAATCTGTCTCATTTTTTAAACTTAATACTTTT
Found at i:104425513 original size:55 final size:55
Alignment explanation
Indices: 104425452--104425563 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
104425442 TTATATATGA
* ** *
104425452 GTTAGCATATTTACTTATTTAGTTGTTTCAATTATCTTCTAATTATTGTCACTAT
1 GTTAGCATATTTACTTACTTAGTTACTTCAATTATCTTCTAATTATTATCACTAT
* *
104425507 GTTAGCATCTTTGCTTACTTAGTTACTTCAATTATCTTCTAATTATTATCACTAT
1 GTTAGCATATTTACTTACTTAGTTACTTCAATTATCTTCTAATTATTATCACTAT
104425562 GT
1 GT
104425564 ATTTTGAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (55 bp):
GTTAGCATATTTACTTACTTAGTTACTTCAATTATCTTCTAATTATTATCACTAT
Found at i:104431457 original size:19 final size:17
Alignment explanation
Indices: 104431420--104431459 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
104431410 ATGGAAAAAT
*
104431420 AAAGAGAGAAAGTTGAG
1 AAAGAGAGAAAGATGAG
104431437 AAAGAAGAGAAGAGATGAG
1 AAAG-AGAGAA-AGATGAG
104431456 AAAG
1 AAAG
104431460 TTATGGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 6 0.30
19 10 0.50
ACGTcount: A:0.57, C:0.00, G:0.35, T:0.07
Consensus pattern (17 bp):
AAAGAGAGAAAGATGAG
Found at i:104432033 original size:12 final size:11
Alignment explanation
Indices: 104432006--104432043 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
104431996 GAAAATAATC
*
104432006 AAAATTAA-TC
1 AAAATTAATTA
104432016 AAAATTAATTA
1 AAAATTAATTA
104432027 TAAAATTAATTA
1 -AAAATTAATTA
104432039 AAAAT
1 AAAAT
104432044 CATTATGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 8 0.32
11 6 0.24
12 11 0.44
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:104432048 original size:22 final size:22
Alignment explanation
Indices: 104432006--104432049 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
104431996 GAAAATAATC
*
104432006 AAAATTAATCAAAATTAATTAT
1 AAAATTAATCAAAAATAATTAT
* *
104432028 AAAATTAATTAAAAATCATTAT
1 AAAATTAATCAAAAATAATTAT
104432050 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAATTAATCAAAAATAATTAT
Found at i:104434486 original size:43 final size:43
Alignment explanation
Indices: 104434421--104434585 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 43
104434411 TATCGAGATA
*
104434421 TGATTACATGTAAGACCTTGTGTGGGACAGTGGCATTTTATTG
1 TGATTACATGTAAGACCCTGTGTGGGACAGTGGCATTTTATTG
* *
104434464 TGATTACATGTAAGACCCTGTGTGGGATAGT-GAATTTGTATTG
1 TGATTACATGTAAGACCCTGTGTGGGACAGTGGCATTT-TATTG
* ** * * *
104434507 CGATTATGTGTAAGACCATGTGTGGGACA-TCGACATCGTTA--G
1 TGATTACATGTAAGACCCTGTGTGGGACAGT-GGCAT-TTTATTG
**
104434549 TCGACTT-TGTGTAAGACCCTGTGTGGGACAGTGGCAT
1 T-GA-TTACATGTAAGACCCTGTGTGGGACAGTGGCAT
104434586 CAATATACGA
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
42 7 0.07
43 86 0.85
44 7 0.07
45 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCCTGTGTGGGACAGTGGCATTTTATTG
Found at i:104440084 original size:2 final size:2
Alignment explanation
Indices: 104440073--104440101 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
104440063 TAAATATGTT
104440073 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
104440102 AAATGTCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:104442722 original size:20 final size:19
Alignment explanation
Indices: 104442684--104442725 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
104442674 TTATTTTTAC
104442684 TATAAATATTATGTATATA
1 TATAAATATTATGTATATA
104442703 TATAAATGATTTAT-TATATA
1 TATAAAT-A-TTATGTATATA
104442723 TAT
1 TAT
104442726 TATTTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 10 0.48
21 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
TATAAATATTATGTATATA
Found at i:104442800 original size:20 final size:22
Alignment explanation
Indices: 104442771--104442838 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 22
104442761 TATGTTTTAT
104442771 TTATAT-ATTTTA-TA-ATATA
1 TTATATCATTTTACTATATATA
104442790 TTATATCATTTTACTATATATA
1 TTATATCATTTTACTATATATA
* * * *
104442812 TTAT-TCATTATATTATTTTTA
1 TTATATCATTTTACTATATATA
104442833 TTATAT
1 TTATAT
104442839 TTAATGTTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.15
20 6 0.15
21 19 0.46
22 10 0.24
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (22 bp):
TTATATCATTTTACTATATATA
Found at i:104442835 original size:14 final size:14
Alignment explanation
Indices: 104442788--104442839 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
104442778 TTTTATAATA
*
104442788 TATTATATCA-TTT
1 TATTATATTATTTT
*
104442801 TACTATATATATTATT
1 TATTATAT-TATT-TT
*
104442817 CATTATATTATTTT
1 TATTATATTATTTT
104442831 TATTATATT
1 TATTATATT
104442840 TAATGTTACT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 7 0.23
14 11 0.35
15 5 0.16
16 8 0.26
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTATATTATTTT
Found at i:104455225 original size:39 final size:40
Alignment explanation
Indices: 104455154--104455377 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
104455144 GCTACTCGTT
*
104455154 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
104455194 CAAATGCCTT-GGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
104455233 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
104455273 CAAATGCCTTCGGGA-TTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
104455312 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
104455353 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
104455378 CATCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 3 0.02
39 66 0.40
40 85 0.52
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:104455266 original size:79 final size:80
Alignment explanation
Indices: 104455154--104455377 Score: 296
Period size: 79 Copynumber: 2.8 Consensus size: 80
104455144 GCTACTCGTT
* *
104455154 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTT-GGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
104455217 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
104455233 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-TTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
104455297 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * * * *
104455312 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
104455375 GGA
64 GGA
104455378 CATCATTCAA
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 3 0.02
79 102 0.79
80 24 0.19
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:104458070 original size:44 final size:44
Alignment explanation
Indices: 104458012--104459020 Score: 1133
Period size: 44 Copynumber: 23.1 Consensus size: 44
104458002 ATAGATCACC
*
104458012 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * *
104458056 AATAACAAATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
104458100 GATAACAGGTTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
104458144 GATGACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * * * * *
104458188 GATAGCAGATTTGACATTTTTGTATTGGCAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
*
104458232 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
104458276 GATAATAGGTTTGGCGTCTCTGTATTGAT-AGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAA
* * *
104458320 GATGGA-AGATTTGGAGTCTCTGTATTGTCAGAGAGCAGATCAAA
1 GAT-AACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
104458364 GATAACAGGTTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * * *
104458408 GATAGCAGATTTGACATTTTTGTATTGGT-AGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAA
*
104458452 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
104458496 GATGACAGGTTTGGCGTCTCTGTATTGAT-AGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAA
* * * * * *
104458540 GATGGA-AGATTTGGAGTCTCTGTATTGGCAGAGAGGAAACCGAA
1 GAT-AACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
*
104458584 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* ** * * *
104458628 GATAGCAGATTTGGTATTTCTGTATTGACAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
104458672 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCATATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
104458716 GATGATAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * * * *
104458760 GATAGCAGATTTGACATTTCTGTATTGACAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * *
104458804 GATAATAGATTTGACGTCTCTGTACTGTCAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
** * * * *
104458848 GATAACAGATTTTTCGTCTCTGTATTGACAAAGAACGGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * *
104458892 GATAACAGATTT-G-G----TATATTGACAGAGGGCAGATTGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * ** *
104458930 TATGACAGATTTGGCATCTCTGTATTAACAGAAAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * * *
104458974 GATAGCAGATTTGGAGTATCTGTATTGACAGAG-GATAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAG-CAGATCGAA
104459018 GAT
1 GAT
104459021 GACAAATTCG
Statistics
Matches: 819, Mismatches: 129, Indels: 34
0.83 0.13 0.03
Matches are distributed among these distances:
38 28 0.03
39 1 0.00
42 1 0.00
43 5 0.01
44 777 0.95
45 7 0.01
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
Found at i:104459408 original size:17 final size:17
Alignment explanation
Indices: 104459388--104459420 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
104459378 TTAATAAATT
*
104459388 AAAAATGAAATTAAACG
1 AAAAATAAAATTAAACG
104459405 AAAAATAAAATTAAAC
1 AAAAATAAAATTAAAC
104459421 AGTCCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAATAAAATTAAACG
Found at i:104460703 original size:22 final size:22
Alignment explanation
Indices: 104460677--104460721 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
104460667 TTAATCCTTT
104460677 TTTATATATTGCTAAAT-TTTTA
1 TTTATATATT-CTAAATATTTTA
* *
104460699 TTTATTTATTTTAAATATTTTA
1 TTTATATATTCTAAATATTTTA
104460721 T
1 T
104460722 ATATTACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTATATATTCTAAATATTTTA
Found at i:104460802 original size:16 final size:16
Alignment explanation
Indices: 104460774--104460870 Score: 74
Period size: 16 Copynumber: 5.9 Consensus size: 16
104460764 TTATTTATCG
104460774 TATATTATTTTATTATT
1 TATATTA-TTTATTATT
104460791 TAT-TTATATTATTATGT
1 TATATTAT-TTATTAT-T
* * * *
104460808 TATGTTGTCTATTATA
1 TATATTATTTATTATT
*
104460824 TATATTATCTATTATT
1 TATATTATTTATTATT
*
104460840 TAT-TTATATT-TTATCA
1 TATATTAT-TTATTAT-T
104460856 TATATTATTTATTAT
1 TATATTATTTATTAT
104460871 GTTGTTTATC
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
15 9 0.14
16 32 0.49
17 21 0.32
18 3 0.05
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (16 bp):
TATATTATTTATTATT
Found at i:104460869 original size:32 final size:32
Alignment explanation
Indices: 104460794--104460895 Score: 102
Period size: 32 Copynumber: 3.2 Consensus size: 32
104460784 TATTATTTAT
*
104460794 TTATATTATTATGTTATGTTGTCTATTAT-ATATA
1 TTAT-TTATTATGTTAT-TTATCT-TTATCATATA
* *
104460828 TTATCTATTAT-TTATTTATATTTTATCATATA
1 TTATTTATTATGTTATTTAT-CTTTATCATATA
* *
104460860 TTATTTATTATGTTGTTTATCTTTATC-TTTA
1 TTATTTATTATGTTATTTATCTTTATCATATA
104460891 TTATT
1 TTATT
104460896 ATAATTTTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
31 15 0.26
32 26 0.45
33 13 0.22
34 4 0.07
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (32 bp):
TTATTTATTATGTTATTTATCTTTATCATATA
Found at i:104473129 original size:220 final size:219
Alignment explanation
Indices: 104472741--104473178 Score: 761
Period size: 220 Copynumber: 2.0 Consensus size: 219
104472731 AGATCTGACC
* * *
104472741 TTCAGGTGTTTACGCTAAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
1 TTCACGTGTTTACGCTAAAGAAGATCCAAGATGATTTGGCATCTATGTATTGTCAGAGAACAAAT
104472806 CGAAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAA
66 CGAAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAA
*
104472871 CCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGC
131 CCTTCGGATGTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGC
*
104472936 AGATCGAAGACATGGTAGATTTGGCT
196 AGATCGAAG--ATAGTAGATTTGGCT
* *
104472962 TTCACGTGTTTACGCTGAAGAAGATCTAAGATGATTTGGCATCTATGTATTGTCAGAGAACAAAT
1 TTCACGTGTTTACGCTAAAGAAGATCCAAGATGATTTGGCATCTATGTATTGTCAGAGAACAAAT
* *
104473027 CGAATA-AACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAA
66 CGAAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAA
*
104473091 CCTTCGGATGTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAATGAGC
131 CCTTCGGATGTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGC
104473156 AGATCGAAGATAGTAGATTTGGC
196 AGATCGAAGATAGTAGATTTGGC
104473179 GTCTCTATAT
Statistics
Matches: 207, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
218 13 0.06
220 129 0.62
221 65 0.31
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (219 bp):
TTCACGTGTTTACGCTAAAGAAGATCCAAGATGATTTGGCATCTATGTATTGTCAGAGAACAAAT
CGAAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAA
CCTTCGGATGTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGC
AGATCGAAGATAGTAGATTTGGCT
Found at i:104473664 original size:44 final size:44
Alignment explanation
Indices: 104473152--104473662 Score: 706
Period size: 44 Copynumber: 11.6 Consensus size: 44
104473142 CGTTTACAAT
* * *
104473152 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
104473196 GAGCAGATCGATGATAGCAGATTTGGTATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
*
104473240 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * *
104473284 GAGTAGATCGAAGATAGCAGATTTGGTATCTCTGTATTGTTAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* **
104473328 GAGCAGATTGAAGATAG-ATGATTTGGCATC-CTTGCGTT-TACA-A
1 GAGCAGATCGAAGATAGCA-GATTTGGCATCTC-TGTATTGT-CAGA
* *
104473371 GGAGCAGATTGAAGATAGTAGATTTGGCATCTCTGTATTGTCAGA
1 -GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
104473416 GAACAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
*
104473460 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
104473504 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
104473548 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * * *
104473592 GAGTAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTTAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * *
104473636 GAGCAGAACGAAGATAACAGATCTGGC
1 GAGCAGATCGAAGATAGCAGATTTGGC
104473663 GTTCCTGAGT
Statistics
Matches: 414, Mismatches: 45, Indels: 16
0.87 0.09 0.03
Matches are distributed among these distances:
43 4 0.01
44 406 0.98
45 4 0.01
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
Found at i:104473951 original size:17 final size:17
Alignment explanation
Indices: 104473929--104473961 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
104473919 ACAAATATTA
*
104473929 AAAAATGAAATTAAACG
1 AAAAATAAAATTAAACG
104473946 AAAAATAAAATTAAAC
1 AAAAATAAAATTAAAC
104473962 AGTCCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAATAAAATTAAACG
Found at i:104475262 original size:22 final size:22
Alignment explanation
Indices: 104475236--104475280 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
104475226 TTAATCCTTT
104475236 TTTATATATTGCTAAAT-TTTTA
1 TTTATATATT-CTAAATATTTTA
* *
104475258 TTTATTTATTTTAAATATTTTA
1 TTTATATATTCTAAATATTTTA
104475280 T
1 T
104475281 ATATTACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTATATATTCTAAATATTTTA
Found at i:104475408 original size:29 final size:30
Alignment explanation
Indices: 104475322--104475438 Score: 96
Period size: 33 Copynumber: 3.7 Consensus size: 30
104475312 TATATAAAAA
*
104475322 ATTATTTATCGTATATTATTT-TATTATATAT
1 ATTATTTAT--TATGTTATTTATATTATATAT
*
104475353 -TTATATTATTATGTTATGTTGTCTATTATATAT
1 ATTAT-TTATTATGTTA--TT-TATATTATATAT
*
104475386 ATTATCTATTAT-TTATTTATATTTTATCATAT
1 ATTATTTATTATGTTATTTATA--TTAT-ATAT
*
104475418 ATTATTTATTATGTTGTTTAT
1 ATTATTTATTATGTTATTTAT
104475439 CTCTATCTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
29 9 0.13
30 6 0.08
31 10 0.14
32 19 0.27
33 23 0.32
34 4 0.06
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.62
Consensus pattern (30 bp):
ATTATTTATTATGTTATTTATATTATATAT
Found at i:104479765 original size:37 final size:37
Alignment explanation
Indices: 104479724--104479798 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
104479714 ATTTAATGAA
*
104479724 TGATTAATAGATAATTGAAGTGTATATGATATTGAGT
1 TGATTAATAGATAATTGAAGTGAATATGATATTGAGT
*
104479761 TGATTAATAGATAATTGAAGTGAATGTGATATTGAGT
1 TGATTAATAGATAATTGAAGTGAATATGATATTGAGT
104479798 T
1 T
104479799 ATGAAATGCG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (37 bp):
TGATTAATAGATAATTGAAGTGAATATGATATTGAGT
Found at i:104479811 original size:20 final size:21
Alignment explanation
Indices: 104479783--104479827 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
104479773 AATTGAAGTG
*
104479783 AATGTGATATTGAG-TTATGA
1 AATGCGATATTGAGATTATGA
104479803 AATGCGATATTGAGATTATGA
1 AATGCGATATTGAGATTATGA
104479824 AATG
1 AATG
104479828 TGATCTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.36
Consensus pattern (21 bp):
AATGCGATATTGAGATTATGA
Found at i:104479930 original size:40 final size:40
Alignment explanation
Indices: 104479875--104480086 Score: 152
Period size: 40 Copynumber: 5.5 Consensus size: 40
104479865 CTGGGTGCAA
104479875 ATATCGT-TGGTTTATCCAACTAGAGCTGGGCTCACTATTT
1 ATATCGTCT-GTTTATCCAACTAGAGCTGGGCTCACTATTT
* *
104479915 ATATCATCTGTTTATCCGACTAGCA-CTGGG-TGCA--A---
1 ATATCGTCTGTTTATCCAACTAG-AGCTGGGCT-CACTATTT
* * *
104479950 ATATTGT-TGGTTTATCTAACTAGAGCTGAGCTCACTATTT
1 ATATCGTCT-GTTTATCCAACTAGAGCTGGGCTCACTATTT
*
104479990 ATATCGTCAGTTTATCCAACTAGCA-CTGGG-TGCA--A---
1 ATATCGTCTGTTTATCCAACTAG-AGCTGGGCT-CACTATTT
*
104480025 ATATCGT-TGGTTTATCCAACTAGAGTTGGGCTCACTATTT
1 ATATCGTCT-GTTTATCCAACTAGAGCTGGGCTCACTATTT
* * *
104480065 ATATCATCGGTTTATCCGACTA
1 ATATCGTCTGTTTATCCAACTA
104480087 ACACTAGGTG
Statistics
Matches: 133, Mismatches: 16, Indels: 46
0.68 0.08 0.24
Matches are distributed among these distances:
34 3 0.02
35 50 0.38
36 2 0.02
37 2 0.02
38 2 0.02
39 2 0.02
40 69 0.52
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (40 bp):
ATATCGTCTGTTTATCCAACTAGAGCTGGGCTCACTATTT
Found at i:104479972 original size:35 final size:35
Alignment explanation
Indices: 104479858--104480118 Score: 149
Period size: 35 Copynumber: 7.0 Consensus size: 35
104479848 TGAGTAATGG
*
104479858 ACTAACACTGGGTGCAAATATCGTTGGTTTATCCA
1 ACTAGCACTGGGTGCAAATATCGTTGGTTTATCCA
* *
104479893 ACTAG-AGCTGGGCT-CACTATTTATATCATCT-GTTTATCCG
1 ACTAGCA-CTGGG-TGCA--A---ATATCGT-TGGTTTATCCA
* *
104479933 ACTAGCACTGGGTGCAAATATTGTTGGTTTATCTA
1 ACTAGCACTGGGTGCAAATATCGTTGGTTTATCCA
* **
104479968 ACTAG-AGCTGAGCT-CACTATTTATATCGTCAGTTTATCCA
1 ACTAGCA-CTG-GGTGCA--A---ATATCGTTGGTTTATCCA
104480008 ACTAGCACTGGGTGCAAATATCGTTGGTTTATCCA
1 ACTAGCACTGGGTGCAAATATCGTTGGTTTATCCA
* * * *
104480043 ACTAG-AGTTGGGCT-CACTATTTATATCATCGGTTTATCCG
1 ACTAGCA-CTGGG-TGCA--A---ATATCGTTGGTTTATCCA
* *
104480083 ACTAACACTAGGTGCAAATATCGTTGGTTTATCCA
1 ACTAGCACTGGGTGCAAATATCGTTGGTTTATCCA
104480118 A
1 A
104480119 TTATAGTTGG
Statistics
Matches: 172, Mismatches: 25, Indels: 58
0.67 0.10 0.23
Matches are distributed among these distances:
34 4 0.02
35 76 0.44
36 4 0.02
37 3 0.02
38 3 0.02
39 4 0.02
40 74 0.43
41 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (35 bp):
ACTAGCACTGGGTGCAAATATCGTTGGTTTATCCA
Found at i:104479983 original size:75 final size:75
Alignment explanation
Indices: 104479857--104480143 Score: 448
Period size: 75 Copynumber: 3.8 Consensus size: 75
104479847 ATGAGTAATG
104479857 GACTAACACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTTATATCAT
1 GACTAACACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTTATATCAT
*
104479922 CTGTTTATCC
66 CAGTTTATCC
* * * * *
104479932 GACTAGCACTGGGTGCAAATATTGTTGGTTTATCTAACTAGAGCTGAGCTCACTATTTATATCGT
1 GACTAACACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTTATATCAT
104479997 CAGTTTATCC
66 CAGTTTATCC
* * *
104480007 AACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCACTATTTATATCAT
1 GACTAACACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTTATATCAT
*
104480072 CGGTTTATCC
66 CAGTTTATCC
* * * *
104480082 GACTAACACTAGGTGCAAATATCGTTGGTTTATCCAATTATAGTTGGGCTCACTATTTATAT
1 GACTAACACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTTATAT
104480144 TTGTCGGTTT
Statistics
Matches: 194, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 194 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (75 bp):
GACTAACACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTTATATCAT
CAGTTTATCC
Found at i:104480398 original size:24 final size:24
Alignment explanation
Indices: 104480371--104480423 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
104480361 TTTACTTATG
*
104480371 TATATACATTTATTCATTTGAAGA
1 TATAAACATTTATTCATTTGAAGA
104480395 TATAAACATTTATTCATTTGAAGA
1 TATAAACATTTATTCATTTGAAGA
104480419 TATAA
1 TATAA
104480424 TATATTCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.43
Consensus pattern (24 bp):
TATAAACATTTATTCATTTGAAGA
Found at i:104481502 original size:10 final size:10
Alignment explanation
Indices: 104481487--104481536 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
104481477 AAATTTTAGG
104481487 ATTTAT-TTT
1 ATTTATCTTT
104481496 CATTTATCTTT
1 -ATTTATCTTT
*
104481507 AATTATCTTT
1 ATTTATCTTT
104481517 ATTTAT-TTGT
1 ATTTATCTT-T
*
104481527 AATTATCTTT
1 ATTTATCTTT
104481537 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:104481520 original size:20 final size:20
Alignment explanation
Indices: 104481497--104481536 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
104481487 ATTTATTTTC
104481497 ATTTATCTT-TAATTATCTTT
1 ATTTAT-TTGTAATTATCTTT
104481517 ATTTATTTGTAATTATCTTT
1 ATTTATTTGTAATTATCTTT
104481537 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTATTTGTAATTATCTTT
Found at i:104482293 original size:17 final size:18
Alignment explanation
Indices: 104482261--104482294 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
104482251 TATTCTTCAT
104482261 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGTAATTTA
104482279 TTTAATTTT-GTAATTT
1 TTTAATTTTCGTAATTT
104482295 TTAATTCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TTTAATTTTCGTAATTTA
Found at i:104485636 original size:21 final size:21
Alignment explanation
Indices: 104485610--104485658 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
104485600 AAGAAAAGAC
*
104485610 CACTTTTACGTGCCTATTTGG
1 CACTTTTACGTGCCCATTTGG
*
104485631 CACTTTTACGTTCCCATTTGG
1 CACTTTTACGTGCCCATTTGG
104485652 CACTTTT
1 CACTTTT
104485659 GCATACAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.27, G:0.14, T:0.45
Consensus pattern (21 bp):
CACTTTTACGTGCCCATTTGG
Found at i:104487848 original size:5 final size:5
Alignment explanation
Indices: 104487838--104487902 Score: 66
Period size: 5 Copynumber: 13.4 Consensus size: 5
104487828 GTTTTTATTG
* *
104487838 TTTTA TTTTA TTTTA TTTTTA TTTTTA TTTT- TATT- TTTTA TTTT- TATTA
1 TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
104487887 TTTTA -TTTA TTTTA TT
1 TTTTA TTTTA TTTTA TT
104487903 AATAAAAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
4 13 0.25
5 28 0.54
6 11 0.21
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:104487848 original size:13 final size:12
Alignment explanation
Indices: 104487830--104487899 Score: 74
Period size: 13 Copynumber: 5.8 Consensus size: 12
104487820 GCAACCCAGT
104487830 TTTTATTGTTTTA
1 TTTTATT-TTTTA
*
104487843 TTTTATTTTAT-
1 TTTTATTTTTTA
104487854 TTTTA-TTTTTA
1 TTTTATTTTTTA
104487865 TTTTTATTTTTTA
1 -TTTTATTTTTTA
104487878 TTTTTATTATTTTA
1 -TTTTATT-TTTTA
104487892 -TTTATTTT
1 TTTTATTTT
104487900 ATTAATAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
10 4 0.08
11 7 0.14
12 14 0.27
13 21 0.41
14 5 0.10
ACGTcount: A:0.17, C:0.00, G:0.01, T:0.81
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:104487859 original size:6 final size:6
Alignment explanation
Indices: 104487829--104487899 Score: 76
Period size: 6 Copynumber: 11.7 Consensus size: 6
104487819 GGCAACCCAG
104487829 TTTTTA TTGTTT- TATTTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTTTTA
1 TTTTTA TT-TTTA T-TTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA
*
104487878 TTTTTA TTATTT- TATTTA TTTT
1 TTTTTA TT-TTTA TTTTTA TTTT
104487900 ATTAATAAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
5 8 0.14
6 35 0.62
7 13 0.23
ACGTcount: A:0.17, C:0.00, G:0.01, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:104489501 original size:10 final size:10
Alignment explanation
Indices: 104489486--104489535 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
104489476 AAATTTTAGG
104489486 ATTTAT-TTT
1 ATTTATCTTT
104489495 CATTTATCTTT
1 -ATTTATCTTT
*
104489506 AATTATCTTT
1 ATTTATCTTT
104489516 ATTTAT-TTGT
1 ATTTATCTT-T
*
104489526 AATTATCTTT
1 ATTTATCTTT
104489536 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:104489519 original size:20 final size:20
Alignment explanation
Indices: 104489496--104489535 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
104489486 ATTTATTTTC
104489496 ATTTATCTT-TAATTATCTTT
1 ATTTAT-TTGTAATTATCTTT
104489516 ATTTATTTGTAATTATCTTT
1 ATTTATTTGTAATTATCTTT
104489536 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTATTTGTAATTATCTTT
Found at i:104500372 original size:34 final size:34
Alignment explanation
Indices: 104500306--104500569 Score: 273
Period size: 34 Copynumber: 7.7 Consensus size: 34
104500296 TTTCCTCATT
* * *
104500306 GAAATACCATA-CTACATTTCACAACTCGGTATG
1 GAAATACCATACCTACGTTTCACAGCTCAGTATG
* *
104500339 GAAAACACCATACCTACGTTTCA-TGCTCAGTATG
1 G-AAATACCATACCTACGTTTCACAGCTCAGTATG
** * * *
104500373 GAAAATACCATACCTATATTTCATAACTCAATATAG
1 G-AAATACCATACCTACGTTTCACAGCTCAGTAT-G
* * * *
104500409 GCAATGCCATACCTACGTATCATAGCTCAGTATG
1 GAAATACCATACCTACGTTTCACAGCTCAGTATG
** *
104500443 G-ACGACGTCATACCTACGTTTCACAGCTCGGTATG
1 GAAATAC--CATACCTACGTTTCACAGCTCAGTATG
*
104500478 GAAATACCATACCTACGTTTCACAGCTCGGTATG
1 GAAATACCATACCTACGTTTCACAGCTCAGTATG
* *
104500512 GAATTACCATACCTACGTTTCACAGCTCGGTATG
1 GAAATACCATACCTACGTTTCACAGCTCAGTATG
*
104500546 GAAATTCCATACCTACGTTTCACA
1 GAAATACCATACCTACGTTTCACA
104500570 CTTTGTCTTG
Statistics
Matches: 195, Mismatches: 29, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
33 3 0.02
34 121 0.62
35 66 0.34
36 5 0.03
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (34 bp):
GAAATACCATACCTACGTTTCACAGCTCAGTATG
Found at i:104500542 original size:68 final size:68
Alignment explanation
Indices: 104500306--104500569 Score: 291
Period size: 69 Copynumber: 3.9 Consensus size: 68
104500296 TTTCCTCATT
* *
104500306 GAAATACCATA-CTACATTTCACAACTCGGTATGGAAAACACCATACCTACGTTTCA-TGCTCAG
1 GAAATACCATACCTACATTTCACAACTCGGTATGG-AAATACCATACCTACGTTTCACAGCTCAG
104500369 TATG
65 TATG
* * ** * * * *
104500373 GAAAATACCATACCTATATTTCATAACTCAATATAGGCAATGCCATACCTACGTATCATAGCTCA
1 G-AAATACCATACCTACATTTCACAACTCGGTAT-GGAAATACCATACCTACGTTTCACAGCTCA
104500438 GTATG
64 GTATG
** * * *
104500443 G-ACGACGTCATACCTACGTTTCACAGCTCGGTATGGAAATACCATACCTACGTTTCACAGCTCG
1 GAAATAC--CATACCTACATTTCACAACTCGGTATGGAAATACCATACCTACGTTTCACAGCTCA
104500507 GTATG
64 GTATG
* * * *
104500512 GAATTACCATACCTACGTTTCACAGCTCGGTATGGAAATTCCATACCTACGTTTCACA
1 GAAATACCATACCTACATTTCACAACTCGGTATGGAAATACCATACCTACGTTTCACA
104500570 CTTTGTCTTG
Statistics
Matches: 165, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
67 1 0.01
68 63 0.38
69 65 0.39
70 36 0.22
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (68 bp):
GAAATACCATACCTACATTTCACAACTCGGTATGGAAATACCATACCTACGTTTCACAGCTCAGT
ATG
Found at i:104500654 original size:27 final size:27
Alignment explanation
Indices: 104500624--104500689 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
104500614 GATCACTGAA
*
104500624 CACTTTGTCATGTTTGGCACACTTTAT
1 CACTTTGTCATATTTGGCACACTTTAT
104500651 CACTTTGTCATATTTGGCACACTTTAT
1 CACTTTGTCATATTTGGCACACTTTAT
*
104500678 CACTTTGCCATA
1 CACTTTGTCATA
104500690 GCTTAGCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.42
Consensus pattern (27 bp):
CACTTTGTCATATTTGGCACACTTTAT
Found at i:104503801 original size:18 final size:18
Alignment explanation
Indices: 104503778--104503814 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
104503768 TCTTCAATTT
104503778 TCAATATGATCAATCCAA
1 TCAATATGATCAATCCAA
*
104503796 TCAATATGTTCAATCCAA
1 TCAATATGATCAATCCAA
104503814 T
1 T
104503815 TAAATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (18 bp):
TCAATATGATCAATCCAA
Found at i:104516362 original size:44 final size:44
Alignment explanation
Indices: 104516313--104516448 Score: 117
Period size: 42 Copynumber: 3.2 Consensus size: 44
104516303 TTGGAATTGT
104516313 TTTGGCACCATGGTATCTACCTTCTCCATTGTCCCAAATTGTGC
1 TTTGGCACCATGGTATCTACCTTCTCCATTGTCCCAAATTGTGC
* * * * ***
104516357 TTTGGCACTAT--CATGATA-GTT-TCCTGAGTT-T-TGGAATTGT--
1 TTTGGCACCATGGTAT-CTACCTTCTCC--A-TTGTCCCAAATTGTGC
104516397 TTTGGCACCATGGTATCTACCTTCTCCATTGTCCCAAATTGTGC
1 TTTGGCACCATGGTATCTACCTTCTCCATTGTCCCAAATTGTGC
104516441 TTTGGCAC
1 TTTGGCAC
104516449 TATCATTATG
Statistics
Matches: 66, Mismatches: 14, Indels: 24
0.63 0.13 0.23
Matches are distributed among these distances:
40 12 0.18
41 7 0.11
42 20 0.30
43 7 0.11
44 20 0.30
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (44 bp):
TTTGGCACCATGGTATCTACCTTCTCCATTGTCCCAAATTGTGC
Found at i:104516424 original size:84 final size:84
Alignment explanation
Indices: 104516283--104516454 Score: 344
Period size: 84 Copynumber: 2.0 Consensus size: 84
104516273 AGACATGGAG
104516283 TCATGATAGTTTCCTGAGTTTTGGAATTGTTTTGGCACCATGGTATCTACCTTCTCCATTGTCCC
1 TCATGATAGTTTCCTGAGTTTTGGAATTGTTTTGGCACCATGGTATCTACCTTCTCCATTGTCCC
104516348 AAATTGTGCTTTGGCACTA
66 AAATTGTGCTTTGGCACTA
104516367 TCATGATAGTTTCCTGAGTTTTGGAATTGTTTTGGCACCATGGTATCTACCTTCTCCATTGTCCC
1 TCATGATAGTTTCCTGAGTTTTGGAATTGTTTTGGCACCATGGTATCTACCTTCTCCATTGTCCC
104516432 AAATTGTGCTTTGGCACTA
66 AAATTGTGCTTTGGCACTA
104516451 TCAT
1 TCAT
104516455 TATGGAACAT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 88 1.00
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41
Consensus pattern (84 bp):
TCATGATAGTTTCCTGAGTTTTGGAATTGTTTTGGCACCATGGTATCTACCTTCTCCATTGTCCC
AAATTGTGCTTTGGCACTA
Found at i:104520009 original size:24 final size:24
Alignment explanation
Indices: 104519965--104520011 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
104519955 AAATAAAAAA
* *
104519965 ATTTAAATACAATAAATCAAATAC
1 ATTTAAAAACAATAAAACAAATAC
104519989 ATTTAAAAAC-ATAAAAACAAATA
1 ATTTAAAAACAAT-AAAACAAATA
104520012 TTAAAACAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.26
Consensus pattern (24 bp):
ATTTAAAAACAATAAAACAAATAC
Done.