Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 314 of 349
Found at i:104813298 original size:25 final size:25
Alignment explanation
Indices: 104813257--104813306 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
104813247 TGTGCAAATA
104813257 CGAATGAATAAGAGCACTATGTGTG
1 CGAATGAATAAGAGCACTATGTGTG
* *
104813282 CGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTGTG
104813307 TGCGAATTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGTG
Found at i:104817230 original size:47 final size:47
Alignment explanation
Indices: 104817170--104817354 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
104817160 GATAATTGTG
**
104817170 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
104817217 ATGTGAACATGCATATATGTTATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
104817264 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
104817311 ATATGAACATGCATATATGTGGTAATGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
104817355 AATATATGTA
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 124 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:104817609 original size:37 final size:37
Alignment explanation
Indices: 104817559--104817708 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
104817549 GGAAATATAT
104817559 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
104817596 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
104817633 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
104817670 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
104817707 TC
1 TC
104817709 TGAGCTAAAG
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:104819652 original size:23 final size:20
Alignment explanation
Indices: 104819622--104819670 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 20
104819612 TATTTTACAT
104819622 ATAAAAATATAATAAGTAATATA
1 ATAAAAATAT-ATAA--AATATA
*
104819645 ATAAAAATATATAACATATA
1 ATAAAAATATATAAAATATA
104819665 ATAAAA
1 ATAAAA
104819671 TTTATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 11 0.44
22 4 0.16
23 10 0.40
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (20 bp):
ATAAAAATATATAAAATATA
Found at i:104821839 original size:181 final size:175
Alignment explanation
Indices: 104821347--104821983 Score: 909
Period size: 175 Copynumber: 3.6 Consensus size: 175
104821337 GTAAACACGT
* * ** * * *
104821347 GAAAGCCAAATCTGCTGTGTCTTCGATTTACTCCTTGTGAACACAAGGATGCCAAATCATCTTAG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
104821412 ATCTGTTTTAGTA-AAATCATCTGAAGGTTAGATTTGCTATGTATCTGCTCTCCGTCGAAATGGA
66 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
*
104821476 GATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATTC
130 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATTC
104821522 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
104821587 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTTTCCATCGAAATGGAT
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
* *
104821652 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGCGTGAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATTC
** * * * * * *
104821697 GAAAGTGTAATCTGCTATGTCTTCGATTTGCTCCTCGTCGAAGATAGAGAA-GCTAAATCTTGTT
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGT-AAACACA-AGAATGCCAAATC-----
* *
104821761 ATCTTGGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGA
59 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGA
* *
104821826 AATGGAGATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAGAACATTT
124 AATGGAGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATTC
104821878 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
104821943 ATTTGCTTCAATATAAACATCTGAAGGTTAGATTTGCTATG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATG
104821984 CTTTGGTCTG
Statistics
Matches: 408, Mismatches: 45, Indels: 18
0.87 0.10 0.04
Matches are distributed among these distances:
175 233 0.57
176 14 0.03
177 4 0.01
179 4 0.01
180 11 0.03
181 142 0.35
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATTC
Found at i:104838597 original size:17 final size:18
Alignment explanation
Indices: 104838571--104838604 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
104838561 CTTATTTTTA
104838571 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
104838588 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
104838605 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:104848214 original size:47 final size:47
Alignment explanation
Indices: 104848155--104848719 Score: 986
Period size: 47 Copynumber: 11.9 Consensus size: 47
104848145 TAGTATGGCG
* *
104848155 TAATGACCGATGTGATGAATGTGAGAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
104848202 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
104848249 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
104848296 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
104848343 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
104848390 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
104848437 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
104848486 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
104848535 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
104848582 TAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
104848629 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
104848676 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
104848720 TCCCGAAGGG
Statistics
Matches: 500, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 406 0.81
49 94 0.19
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:104848894 original size:37 final size:37
Alignment explanation
Indices: 104848838--104848916 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
104848828 CCGAGCTCTA
* *
104848838 AAGACCCGATGACTACGTGT-GAGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGA-GATTATGTCCGGGT
*
104848875 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
104848912 AAGAC
1 AAGAC
104848917 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:104853629 original size:43 final size:43
Alignment explanation
Indices: 104853526--104853629 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
104853516 TAGCCCAGCT
*
104853526 ATGGTCTTACACAAAATCAAATAACGATGCCAATGTTCCAGAC
1 ATGGTCTTACACATAATCAAATAACGATGCCAATGTTCCAGAC
* * * *
104853569 ATGGTCTTACACGTAATCATATAATGATGCCAATG-TCTCAGGC
1 ATGGTCTTACACATAATCAAATAACGATGCCAATGTTC-CAGAC
*
104853612 ATGGTCTTACATATAATC
1 ATGGTCTTACACATAATC
104853630 TCATCTCGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 2 0.04
43 51 0.96
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACATAATCAAATAACGATGCCAATGTTCCAGAC
Found at i:104854961 original size:13 final size:13
Alignment explanation
Indices: 104854943--104854969 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
104854933 CCAAAATTTA
104854943 TTTTATTTATATT
1 TTTTATTTATATT
104854956 TTTTATTTATATT
1 TTTTATTTATATT
104854969 T
1 T
104854970 ATATTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTATTTATATT
Found at i:104854970 original size:19 final size:18
Alignment explanation
Indices: 104854939--104854982 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 18
104854929 GCAACCAAAA
104854939 TTTATTTTATTTATATTT
1 TTTATTTTATTTATATTT
104854957 TTTATTTATATTTATATTT
1 TTTATTT-TATTTATATTT
*
104854976 TCTATTT
1 TTTATTT
104854983 CCTTTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTATTTTATTTATATTT
Found at i:104858886 original size:18 final size:18
Alignment explanation
Indices: 104858863--104858905 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
104858853 AAATGTTAGT
104858863 CTACATATAAAAAACAAA
1 CTACATATAAAAAACAAA
104858881 CTACATATAAAAAACAAA
1 CTACATATAAAAAACAAA
104858899 CTACATA
1 CTACATA
104858906 CTAGCCTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (18 bp):
CTACATATAAAAAACAAA
Found at i:104871357 original size:56 final size:56
Alignment explanation
Indices: 104871271--104871381 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
104871261 AAAAGCAATG
104871271 AGGCATTAATGTAAAGGAAGAACAGAAGAGCAAATGGCCATTACCTATATACTTTC
1 AGGCATTAATGTAAAGGAAGAACAGAAGAGCAAATGGCCATTACCTATATACTTTC
*
104871327 AGGCATTAATGTAAAGGAAGAACAGAAGAGCAAATGGCCATTGCCTATATACTTT
1 AGGCATTAATGTAAAGGAAGAACAGAAGAGCAAATGGCCATTACCTATATACTTT
104871382 TTCAGACCCA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (56 bp):
AGGCATTAATGTAAAGGAAGAACAGAAGAGCAAATGGCCATTACCTATATACTTTC
Found at i:104875988 original size:28 final size:28
Alignment explanation
Indices: 104875946--104876001 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
104875936 GAAATCAGCC
*
104875946 TTATCCATTGGAGCTCACAAAACCAGTT
1 TTATCCATTGCAGCTCACAAAACCAGTT
104875974 TTATCCATTGCAGCTCACAAAACCAGTT
1 TTATCCATTGCAGCTCACAAAACCAGTT
104876002 GGCTGATATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (28 bp):
TTATCCATTGCAGCTCACAAAACCAGTT
Found at i:104890623 original size:22 final size:22
Alignment explanation
Indices: 104890581--104890625 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
104890571 TACTTTAGCC
*
104890581 ATTTTTATTTTTATTGCAATTT
1 ATTTTTATTTTTATTACAATTT
*
104890603 ATTTTTATTTTTATTATAATTT
1 ATTTTTATTTTTATTACAATTT
104890625 A
1 A
104890626 CTAACTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (22 bp):
ATTTTTATTTTTATTACAATTT
Found at i:104895521 original size:18 final size:18
Alignment explanation
Indices: 104895498--104895600 Score: 64
Period size: 18 Copynumber: 5.4 Consensus size: 18
104895488 ACATCGTGAT
104895498 CTGAAGCCCGAAGGCTAA
1 CTGAAGCCCGAAGGCTAA
*
104895516 CTGAAGCACAC-AAGTGTTAA
1 CTGAAGC-C-CGAAG-GCTAA
* *
104895536 ATGGAAGCCCAAAGGCTAA
1 CT-GAAGCCCGAAGGCTAA
* **
104895555 TTGAAGCATGCAAGTGCTAAA
1 CTGAAGCCCG-AAG-GCT-AA
* *
104895576 CGGAAGCCCGAAGGTTAA
1 CTGAAGCCCGAAGGCTAA
104895594 CTGAAGC
1 CTGAAGC
104895601 TCATCAGAGC
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
18 20 0.31
19 15 0.23
20 16 0.25
21 13 0.20
ACGTcount: A:0.37, C:0.21, G:0.26, T:0.16
Consensus pattern (18 bp):
CTGAAGCCCGAAGGCTAA
Found at i:104895554 original size:39 final size:39
Alignment explanation
Indices: 104895500--104895600 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
104895490 ATCGTGATCT
* *
104895500 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * **
104895539 GAAGCCCAAAGGCTAATTGAAGCATGCAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
104895578 GAAGCCCGAAGGTTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
104895601 TCATCAGAGC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.38, C:0.21, G:0.27, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:104895613 original size:39 final size:39
Alignment explanation
Indices: 104895500--104895615 Score: 130
Period size: 39 Copynumber: 3.0 Consensus size: 39
104895490 ATCGTGATCT
* *
104895500 GAAGCCCGAAGGCTAACTGAAGCACA-CAAGTGTTAAATG
1 GAAGCCCGAAGGCTAACTGAAGC-CATCAAGTGCTAAACG
* *
104895539 GAAGCCCAAAGGCTAATTGAAG-CATGCAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCCAT-CAAGTGCTAAACG
* *
104895578 GAAGCCCGAAGGTTAACTGAAGCTCATC-AGAGCTAAAC
1 GAAGCCCGAAGGCTAACTGAAGC-CATCAAGTGCTAAAC
104895616 TGAAACCCCA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
37 2 0.03
39 59 0.91
40 1 0.02
41 3 0.05
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.16
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCCATCAAGTGCTAAACG
Found at i:104902855 original size:39 final size:39
Alignment explanation
Indices: 104902812--104902947 Score: 209
Period size: 39 Copynumber: 3.5 Consensus size: 39
104902802 TGGTCTTAAA
* * *
104902812 CCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACGGAAG
1 CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
* * *
104902851 CCCGAAGGCTAATTGAAGCACACAAGTGTTAAACGGAAC
1 CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
*
104902890 CCCAAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
1 CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
104902929 CCCGAAGGCTAACTGAAGC
1 CCCGAAGGCTAACTGAAGC
104902948 TCATCAGAGC
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.38, C:0.25, G:0.24, T:0.13
Consensus pattern (39 bp):
CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
Found at i:104910237 original size:15 final size:15
Alignment explanation
Indices: 104910217--104910245 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
104910207 ATGCCACACA
104910217 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
104910232 CACCGTGTTATCAA
1 CACCGTGTTATCAA
104910246 GCAACAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:104913182 original size:15 final size:15
Alignment explanation
Indices: 104913162--104913191 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
104913152 AAAACATAAT
*
104913162 AATAAAACATAAAAA
1 AATAAAAAATAAAAA
104913177 AATAAAAAATAAAAA
1 AATAAAAAATAAAAA
104913192 TCTACTACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (15 bp):
AATAAAAAATAAAAA
Found at i:104913286 original size:5 final size:5
Alignment explanation
Indices: 104913276--104913306 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
104913266 ATTAACAACT
104913276 AATAA AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA AATAA A
104913307 GAAAAGGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:104917405 original size:11 final size:11
Alignment explanation
Indices: 104917389--104917418 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
104917379 AAAATGGAAG
104917389 AATAAATAAGA
1 AATAAATAAGA
*
104917400 AATAAAAAAGA
1 AATAAATAAGA
104917411 AATAAATA
1 AATAAATA
104917419 GATAAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (11 bp):
AATAAATAAGA
Found at i:104923642 original size:40 final size:44
Alignment explanation
Indices: 104923586--104923685 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 44
104923576 CAATGGTATT
* * *
104923586 TGGCACTAAGTGTGCGAT-TTGAATTAGCTTCGGCTACTT-A-A
1 TGGCACTAAGTGTGCGATACTGAAATAGCTTCGGCTAATTGAGA
*
104923627 -GGCACTAAGTGTGCGATACTGAAATAGCTTCGGTTAATTGAGA
1 TGGCACTAAGTGTGCGATACTGAAATAGCTTCGGCTAATTGAGA
104923670 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
104923686 GAAAGCACTA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
40 17 0.33
41 17 0.33
42 1 0.02
43 1 0.02
44 15 0.29
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (44 bp):
TGGCACTAAGTGTGCGATACTGAAATAGCTTCGGCTAATTGAGA
Found at i:104935958 original size:6 final size:6
Alignment explanation
Indices: 104935936--104936027 Score: 80
Period size: 6 Copynumber: 15.2 Consensus size: 6
104935926 AATAAAGTTC
* **
104935936 AAAATA GAAAA-A CAAAATA AAAATA AAAAT- CAAAGG AAAATA AAAATA
1 AAAATA -AAAATA -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * *
104935984 AAAATA AAGATAA AAAACA AAAATA AAAATA AACATA AAGATA A
1 AAAATA AAAAT-A AAAATA AAAATA AAAATA AAAATA AAAATA A
104936028 GGGGCAGTGT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
5 3 0.04
6 58 0.83
7 9 0.13
ACGTcount: A:0.77, C:0.04, G:0.05, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:104935960 original size:31 final size:29
Alignment explanation
Indices: 104935924--104936025 Score: 98
Period size: 31 Copynumber: 3.4 Consensus size: 29
104935914 CATAATAATT
*
104935924 AAAATAAAGTTCAAAATAGAAAAACAAAATA
1 AAAATAAAGATCAAAA-AGAAAAA-AAAATA
* *
104935955 AAAATAAAAATC-AAAGGAAAATAAAAATA
1 AAAATAAAGATCAAAAAGAAAA-AAAAATA
* *
104935984 AAAATAAAGATAAAAAACAAAAATAAAAATA
1 AAAATAAAGATCAAAAA-GAAAA-AAAAATA
*
104936015 AACATAAAGAT
1 AAAATAAAGAT
104936026 AAGGGGCAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
29 21 0.35
30 7 0.12
31 32 0.53
ACGTcount: A:0.75, C:0.05, G:0.06, T:0.15
Consensus pattern (29 bp):
AAAATAAAGATCAAAAAGAAAAAAAAATA
Found at i:104935979 original size:23 final size:22
Alignment explanation
Indices: 104935949--104936016 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 22
104935939 ATAGAAAAAC
104935949 AAAATAAAAATAAAAATCAAAGG
1 AAAATAAAAATAAAAAT-AAAGG
*
104935972 AAAATAAAAATAAAAATAAAGATAA
1 AAAATAAAAATAAAAATAAAG---G
*
104935997 AAAACAAAAATAAAAATAAA
1 AAAATAAAAATAAAAATAAA
104936017 CATAAAGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.10
23 17 0.43
25 19 0.47
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.13
Consensus pattern (22 bp):
AAAATAAAAATAAAAATAAAGG
Found at i:104941545 original size:46 final size:44
Alignment explanation
Indices: 104941492--104941663 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 44
104941482 TGGGCATCCA
104941492 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
*** * *
104941538 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAGTCCG
* *
104941585 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
104941630 AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104941664 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 60 0.57
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAGTCCG
Found at i:104941643 original size:93 final size:93
Alignment explanation
Indices: 104941484--104941655 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
104941474 AGGATATTTG
* *
104941484 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
104941549 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
104941577 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCCAAGCTCGTTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
104941641 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
104941656 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:104944623 original size:15 final size:15
Alignment explanation
Indices: 104944603--104944671 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
104944593 GTATCTTGGG
104944603 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
104944618 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
104944633 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
104944648 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
104944663 TTTCTTTAT
1 TTTCTTTAT
104944672 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:104944672 original size:30 final size:30
Alignment explanation
Indices: 104944594--104944681 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
104944584 CATAGTATCG
* * * *
104944594 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
104944624 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
104944654 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
104944682 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:104946654 original size:46 final size:45
Alignment explanation
Indices: 104946601--104946776 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
104946591 TATTTGGGCA
104946601 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
104946647 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
104946694 TCAGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
104946740 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104946777 GTGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:104946756 original size:93 final size:93
Alignment explanation
Indices: 104946597--104946768 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
104946587 AGGTTATTTG
* * *
104946597 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
104946662 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
104946690 GGCATCAGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
104946755 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
104946769 ACTTATGGGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:104957073 original size:13 final size:13
Alignment explanation
Indices: 104957057--104957098 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
104957047 TAATATTCTG
104957057 AAAATATTAA-AAC
1 AAAA-ATTAAGAAC
104957070 AAAAATTAAGAAC
1 AAAAATTAAGAAC
*
104957083 ACATAATTAAGAAC
1 A-AAAATTAAGAAC
104957097 AA
1 AA
104957099 GAATAAGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 5 0.19
13 9 0.35
14 12 0.46
ACGTcount: A:0.67, C:0.10, G:0.05, T:0.19
Consensus pattern (13 bp):
AAAAATTAAGAAC
Found at i:104959945 original size:45 final size:45
Alignment explanation
Indices: 104959881--104959970 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
104959871 CAGTAATGAG
104959881 TTAGAAGATGAGCAAATCTGAGAATGTTGAGATGCCAAGACAGCT
1 TTAGAAGATGAGCAAATCTGAGAATGTTGAGATGCCAAGACAGCT
104959926 TTAGAAGATGAGCAAATCTGAGAATGTTGAGATGCCAAGACAGCT
1 TTAGAAGATGAGCAAATCTGAGAATGTTGAGATGCCAAGACAGCT
104959971 AAAAGAGTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (45 bp):
TTAGAAGATGAGCAAATCTGAGAATGTTGAGATGCCAAGACAGCT
Found at i:104962916 original size:41 final size:41
Alignment explanation
Indices: 104962844--104962980 Score: 215
Period size: 41 Copynumber: 3.4 Consensus size: 41
104962834 GTTTGACCAA
*
104962844 AAACGCCGCT-AAAAACAGAGCAATAACGGCGTTTTTGGTC
1 AAACGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGGTC
*
104962884 AAACGCCGCTAAAAAACAGAGCAATAGTGGCGTTTTTGGTC
1 AAACGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGGTC
* *
104962925 AAACGCCGCTAAAAAACTGAGCAATAGCGGCGTTTTTGCTC
1 AAACGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGGTC
104962966 AAAACGCCGC-AAAAA
1 -AAACGCCGCTAAAAA
104962981 GTCATATAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
40 10 0.11
41 71 0.79
42 9 0.10
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (41 bp):
AAACGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGGTC
Found at i:104963035 original size:46 final size:48
Alignment explanation
Indices: 104962985--104963111 Score: 138
Period size: 48 Copynumber: 2.7 Consensus size: 48
104962975 CAAAAAGTCA
* *
104962985 TATAACCCCTAAAAT-CTTAA-ACCCAAAAAAAC-CATAAACACTAATT
1 TATAACCCCTAAAATCCCTAACACCCAAAAAAACAC-TAAACACTAATC
* *
104963031 TATAACCCCTAAAATCCCTAACCCCCTAAAAAACACTAAACACTAATC
1 TATAACCCCTAAAATCCCTAACACCCAAAAAAACACTAAACACTAATC
*** *
104963079 TATAACTTTTAAAA-CCCTAA-ACCCCAAAAAACA
1 TATAACCCCTAAAATCCCTAACACCCAAAAAAACA
104963112 TCATATGGAT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 26 0.38
47 10 0.14
48 32 0.46
49 1 0.01
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (48 bp):
TATAACCCCTAAAATCCCTAACACCCAAAAAAACACTAAACACTAATC
Found at i:104963268 original size:15 final size:15
Alignment explanation
Indices: 104963239--104963282 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
104963229 ATATTTAAGA
*
104963239 TTTAAGG-TCTATGG
1 TTTAAGGTTTTATGG
*
104963253 TTTAGGGTTTTATGG
1 TTTAAGGTTTTATGG
*
104963268 TTTAAGGTTTAATGG
1 TTTAAGGTTTTATGG
104963283 CCATGGGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (15 bp):
TTTAAGGTTTTATGG
Found at i:104963424 original size:37 final size:37
Alignment explanation
Indices: 104963374--104963504 Score: 226
Period size: 37 Copynumber: 3.5 Consensus size: 37
104963364 TTTTCGTTTG
*
104963374 TCGCCTTCGCCCCGTGCATCGTAACCCATCCCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
104963411 TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
* *
104963448 TCGCCTTCGCCCCGTGCGTCGCAACCCATCTCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
*
104963485 TCGCCTTCGCCCTGTGCATC
1 TCGCCTTCGCCCCGTGCATC
104963505 TGCTGCATAG
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.11, C:0.51, G:0.15, T:0.22
Consensus pattern (37 bp):
TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
Found at i:104963831 original size:7 final size:7
Alignment explanation
Indices: 104963816--104963895 Score: 79
Period size: 7 Copynumber: 11.0 Consensus size: 7
104963806 AAATCTTCAA
*
104963816 AAAAATT
1 AAAATTT
104963823 AAAATTT
1 AAAATTT
104963830 AAAAATTT
1 -AAAATTT
104963838 AAAATTT
1 AAAATTT
104963845 AAAATTT
1 AAAATTT
*
104963852 AAAATTA
1 AAAATTT
*
104963859 AAAATTAA
1 AAAATT-T
*
104963867 AAAACTTA
1 AAAA-TTT
104963875 AAAATTT
1 AAAATTT
*
104963882 AATATTT
1 AAAATTT
*
104963889 AATATTT
1 AAAATTT
104963896 TAATCCATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
7 47 0.71
8 17 0.26
9 2 0.03
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (7 bp):
AAAATTT
Found at i:104963834 original size:8 final size:8
Alignment explanation
Indices: 104963790--104963883 Score: 81
Period size: 7 Copynumber: 11.9 Consensus size: 8
104963780 TTTATACAAT
104963790 AATTTAAA
1 AATTTAAA
*
104963798 AGTTATAAA
1 AATT-TAAA
104963807 AATCTTCAAAA
1 AAT-TT--AAA
*
104963818 AAATT-AA
1 AATTTAAA
104963825 AATTTAAA
1 AATTTAAA
104963833 AATTT-AA
1 AATTTAAA
104963840 AATTT-AA
1 AATTTAAA
104963847 AATTT-AA
1 AATTTAAA
104963854 AA-TTAAA
1 AATTTAAA
*
104963861 AATTAAAA
1 AATTTAAA
*
104963869 AACTTAAA
1 AATTTAAA
104963877 AATTTAA
1 AATTTAA
104963884 TATTTAATAT
Statistics
Matches: 71, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
6 2 0.03
7 28 0.39
8 26 0.37
9 7 0.10
10 3 0.04
11 5 0.07
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (8 bp):
AATTTAAA
Found at i:104963839 original size:15 final size:15
Alignment explanation
Indices: 104963815--104963890 Score: 93
Period size: 15 Copynumber: 5.1 Consensus size: 15
104963805 AAAATCTTCA
*
104963815 AAAAAATTAAAATTT
1 AAAAATTTAAAATTT
104963830 AAAAATTTAAAATTT
1 AAAAATTTAAAATTT
104963845 -AAAATTTAAAA-TT
1 AAAAATTTAAAATTT
* *
104963858 AAAAATTAAAAAACTT
1 AAAAATT-TAAAATTT
*
104963874 AAAAATTTAATATTT
1 AAAAATTTAAAATTT
104963889 AA
1 AA
104963891 TATTTTAATC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 25 0.47
16 9 0.17
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (15 bp):
AAAAATTTAAAATTT
Found at i:104964265 original size:17 final size:17
Alignment explanation
Indices: 104964240--104964272 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
104964230 AAAATTTAGC
104964240 TACTCTTTTTCTCTCGT
1 TACTCTTTTTCTCTCGT
*
104964257 TACTGTTTTTCTCTCG
1 TACTCTTTTTCTCTCG
104964273 ATCCTTCGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.27, G:0.09, T:0.58
Consensus pattern (17 bp):
TACTCTTTTTCTCTCGT
Found at i:104969190 original size:6 final size:6
Alignment explanation
Indices: 104969174--104969262 Score: 53
Period size: 6 Copynumber: 15.0 Consensus size: 6
104969164 GGACTTGTTG
* *
104969174 TATTT- TATTTA TATTTA TATTTA -ATCTAA TTTTTA TTATTTA T-TTTA
1 TATTTA TATTTA TATTTA TATTTA TAT-TTA TATTTA -TATTTA TATTTA
* * * *
104969221 GT-TTTGA T-TTTA TATTTT TATTTT TATTTT TATTTT TATTTA
1 -TATTT-A TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA
104969263 ATAATGAATT
Statistics
Matches: 71, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
5 13 0.18
6 51 0.72
7 7 0.10
ACGTcount: A:0.25, C:0.01, G:0.02, T:0.72
Consensus pattern (6 bp):
TATTTA
Found at i:104969225 original size:19 final size:17
Alignment explanation
Indices: 104969202--104969261 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 17
104969192 ATTTAATCTA
104969202 ATTTTTATTATTTATTTT
1 ATTTTTATT-TTTATTTT
*
104969220 AGTTTTGATTTTATATTTTT
1 A-TTTTTATTTT-TA-TTTT
104969240 ATTTTTATTTTTATTTTT
1 ATTTTTATTTTTA-TTTT
104969258 ATTT
1 ATTT
104969262 AATAATGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 14 0.38
19 18 0.49
20 5 0.14
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (17 bp):
ATTTTTATTTTTATTTT
Found at i:104969252 original size:32 final size:31
Alignment explanation
Indices: 104969202--104969261 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
104969192 ATTTAATCTA
104969202 ATTTTTATTATTTATTTTAGTTTTGATTTTAT
1 ATTTTTATTATTTATTTTA-TTTTGATTTTAT
*
104969234 ATTTTTATT-TTTATTTTTATTTTTATTT
1 ATTTTTATTATTTA-TTTTATTTTGATTT
104969262 AATAATGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 12 0.46
32 14 0.54
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (31 bp):
ATTTTTATTATTTATTTTATTTTGATTTTAT
Found at i:104969400 original size:15 final size:16
Alignment explanation
Indices: 104969370--104969403 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
104969360 GACTTTATAA
104969370 TATTTTTATAATATTT
1 TATTTTTATAATATTT
*
104969386 TATTTTTTTAA-ATTT
1 TATTTTTATAATATTT
104969401 TAT
1 TAT
104969404 GACCTTTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTTATAATATTT
Found at i:104969548 original size:44 final size:43
Alignment explanation
Indices: 104969407--104969634 Score: 228
Period size: 43 Copynumber: 5.3 Consensus size: 43
104969397 ATTTTATGAC
* * * * *
104969407 CTTTAGCGGCGTTTTTGGGAAAAGTGCCGCTAAAGGCCAT-GA
1 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGGA
* * *
104969449 CTTTTAG-GGACGTTTGTGAAAAAAGCGTCGCTAAAGGCCATGGT
1 C-TTTAGCGG-CGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGGA
**
104969493 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAATTTCATGGA
1 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGGA
* * * * **
104969536 CTTTTAGTGGCGTTTGTAGATAAAGCGTTGCTAAAAATCATGGA
1 C-TTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGGA
* * *
104969580 CTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAGATCAT-GA
1 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGGA
104969622 CCTTTAGCGGCGT
1 -CTTTAGCGGCGT
104969635 GATCTATAAC
Statistics
Matches: 158, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
42 5 0.03
43 112 0.71
44 41 0.26
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGGA
Found at i:104969569 original size:87 final size:86
Alignment explanation
Indices: 104969407--104969628 Score: 250
Period size: 87 Copynumber: 2.6 Consensus size: 86
104969397 ATTTTATGAC
* * *
104969407 CTTTAGCGGCGTTTTTGGGAAAAGTGCCGCTAAAGGCCATGACTTTTAGGGACGTTTGTGAAAAA
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGCCATGACTTTTAGGGACGTTTGTGAAAAA
** *
104969472 AGCGTCGCTAAAGGCCATGGT
66 AGCGTCGCTAAAAACCATGGA
* ***
104969493 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAATTTCATGGACTTTTAGTGG-CGTTTGT-AGA
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGCCAT-GACTTTTAG-GGACGTTTGTGA-A
* * *
104969556 TAAAGCGTTGCTAAAAATCATGGA
63 AAAAGCGTCGCTAAAAACCATGGA
* ** *
104969580 CTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAGATCATGACCTTTAG
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGCCATGACTTTTAG
104969629 CGGCGTGATC
Statistics
Matches: 115, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
86 42 0.37
87 71 0.62
88 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (86 bp):
CTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGCCATGACTTTTAGGGACGTTTGTGAAAAA
AGCGTCGCTAAAAACCATGGA
Found at i:104979124 original size:21 final size:23
Alignment explanation
Indices: 104979100--104979141 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
104979090 GTCCTATGGT
104979100 CACATGGG-G-GTGTGCCTTGAC
1 CACATGGGCGTGTGTGCCTTGAC
104979121 CACATGGGCGTGTGTGCCTTG
1 CACATGGGCGTGTGTGCCTTG
104979142 TATATAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
23 10 0.53
ACGTcount: A:0.12, C:0.24, G:0.38, T:0.26
Consensus pattern (23 bp):
CACATGGGCGTGTGTGCCTTGAC
Found at i:104989210 original size:9 final size:9
Alignment explanation
Indices: 104989198--104989238 Score: 82
Period size: 9 Copynumber: 4.6 Consensus size: 9
104989188 ACAAATATTA
104989198 AAAATAAAC
1 AAAATAAAC
104989207 AAAATAAAC
1 AAAATAAAC
104989216 AAAATAAAC
1 AAAATAAAC
104989225 AAAATAAAC
1 AAAATAAAC
104989234 AAAAT
1 AAAAT
104989239 GCACCAAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:105003002 original size:21 final size:21
Alignment explanation
Indices: 105002949--105003007 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
105002939 TTAAAATGAG
*
105002949 AATAAT-ATAATATAA-ATAA
1 AATAATAAGAATATAATATAA
105002968 AAT-ATAAGGAAATATAATATAA
1 AATAATAA-G-AATATAATATAA
105002990 AATAATAAGAATATAATA
1 AATAATAAGAATATAATA
105003008 AGTATTTTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 2 0.06
19 4 0.12
21 16 0.47
22 8 0.24
23 4 0.12
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
AATAATAAGAATATAATATAA
Found at i:105003007 original size:26 final size:24
Alignment explanation
Indices: 105002952--105003007 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 24
105002942 AAATGAGAAT
105002952 AATATAATATAAATAAAATATAAGG
1 AATATAATATAAATAAAATATAA-G
*
105002977 AA-AT-ATA-ATATAAAATAATAAG
1 AATATAATATAAATAAAAT-ATAAG
105002999 AATATAATA
1 AATATAATA
105003008 AGTATTTTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
22 11 0.41
23 9 0.33
24 5 0.19
25 2 0.07
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (24 bp):
AATATAATATAAATAAAATATAAG
Found at i:105003009 original size:11 final size:10
Alignment explanation
Indices: 105002950--105003008 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
105002940 TAAAATGAGA
*
105002950 ATAATATAAT
1 ATAATAAAAT
105002960 ATAAATAAAAT
1 AT-AATAAAAT
**
105002971 ATAAGGAAAT
1 ATAATAAAAT
105002981 ATAATATAAA-
1 ATAATA-AAAT
105002991 ATAATAAGAAT
1 ATAATAA-AAT
105003002 ATAATAA
1 ATAATAA
105003009 GTATTTTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (10 bp):
ATAATAAAAT
Found at i:105003891 original size:22 final size:21
Alignment explanation
Indices: 105003865--105003906 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
105003855 ATTAGGGATA
105003865 AATTAGAAATAAATAAAAATGG
1 AATTAGAAAT-AATAAAAATGG
* *
105003887 AATTATAAATATTAAAAATG
1 AATTAGAAATAATAAAAATG
105003907 CAAGAGGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (21 bp):
AATTAGAAATAATAAAAATGG
Found at i:105006148 original size:41 final size:41
Alignment explanation
Indices: 105006091--105006237 Score: 188
Period size: 41 Copynumber: 3.6 Consensus size: 41
105006081 CGGCGTTGCA
* * *
105006091 AAAAACTGAACAATAGCGGCCTTTTTGGCCAAAACGCCACT
1 AAAAACTGATCAATAGCGGCGTTTTTAGCCAAAACGCCACT
* *
105006132 AAAAACTGATCAATAGCGGTGTTTTTAGCTAAAACGCCACT
1 AAAAACTGATCAATAGCGGCGTTTTTAGCCAAAACGCCACT
* *
105006173 AAAAACTGATGAATAGCGGCGTTTTTATGTC-AAACGCCACT
1 AAAAACTGATCAATAGCGGCGTTTTTA-GCCAAAACGCCACT
* * *
105006214 AAAAACTGAGCAGTAGTGGCGTTT
1 AAAAACTGATCAATAGCGGCGTTT
105006238 GTGGTCCAAA
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 91 0.99
42 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (41 bp):
AAAAACTGATCAATAGCGGCGTTTTTAGCCAAAACGCCACT
Found at i:105007918 original size:14 final size:14
Alignment explanation
Indices: 105007879--105007920 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
105007869 TTGTATTATC
*
105007879 TATTATATTATTTA
1 TATTATATTATGTA
*
105007893 TATTTTA-T-TGTA
1 TATTATATTATGTA
105007905 TATTATATTATGTA
1 TATTATATTATGTA
105007919 TA
1 TA
105007921 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TATTATATTATGTA
Found at i:105019906 original size:45 final size:44
Alignment explanation
Indices: 105019851--105020337 Score: 220
Period size: 45 Copynumber: 10.8 Consensus size: 44
105019841 GGGACAATGT
* * *
105019851 AGATAGCAGATTTGGCATCTTTGTATTAGACGGGGAGTAGATCGA
1 AGATAACAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGA
* * * * *
105019896 AGATAACAGATCTGACAT-TCGTGTGTTTACATC-GAAGCAGATCGA
1 AGATAACAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGA
* * * *
105019941 AGATGATAGATTTGGTATCTCCGTATTAGACAGGGAGCAGATCGA
1 AGATAACAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGA
** * * * * *
105019986 AGATAGTAGATCTGACAT-TCATGTGTTTACATC-GAAGCAGATCGA
1 AGATAACAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGA
* * *
105020031 AGATGATAGATTTGGCATCTCTGTATTAGACAGGGAGTAGATCGA
1 AGATAACAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGA
* * * * *
105020076 AGATAGCAGATTTGACAT-TCGTGTGTTTACATC-GAAGCAGATCGA
1 AGATAACAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGA
* * * ** *
105020121 AAATGATAGATTTGGCATCTCCATATTAGACGGGGAGCAGATCAA
1 AGATAACAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGA
* * * * * * *
105020166 AGATAGCAGATCTGACAT-TCGTGTGTTTACATC-GAAACAGATCGA
1 AGATAACAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGA
* * ** **
105020211 ATATGACAGATTTGGTGTCTCCATATTAGACGGGGAGCAGATCGA
1 AGATAACAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGA
* * * * * *
105020256 AGATAGCAGATCTGACAT-TCGTGTGTTTACATC-GAAGCAGATCGA
1 AGATAACAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGA
* * *
105020301 AGATAGCAGATTTGGCGTCTCTGTATTTGACGAGGAG
1 AGATAACAGATTTGGCATCTCTGTATTAGACG-GGAG
105020338 TAAATCAAAG
Statistics
Matches: 314, Mismatches: 98, Indels: 60
0.67 0.21 0.13
Matches are distributed among these distances:
43 5 0.02
44 28 0.09
45 246 0.78
46 30 0.10
47 5 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATAACAGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGA
Found at i:105020011 original size:90 final size:90
Alignment explanation
Indices: 105019858--105020337 Score: 710
Period size: 90 Copynumber: 5.3 Consensus size: 90
105019848 TGTAGATAGC
** * *
105019858 AGATTTGGCATCTTTGTATTAGACGGGGAGTAGATCGAAGATAACAGATCTGACATTCGTGTGTT
1 AGATTTGGCATCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
105019923 TACATCGAAGCAGATCGAAGATGAT
66 TACATCGAAGCAGATCGAAGATGAT
* * * *
105019948 AGATTTGGTATCTCCGTATTAGACAGGGAGCAGATCGAAGATAGTAGATCTGACATTCATGTGTT
1 AGATTTGGCATCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
105020013 TACATCGAAGCAGATCGAAGATGAT
66 TACATCGAAGCAGATCGAAGATGAT
* * * *
105020038 AGATTTGGCATCTCTGTATTAGACAGGGAGTAGATCGAAGATAGCAGATTTGACATTCGTGTGTT
1 AGATTTGGCATCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
*
105020103 TACATCGAAGCAGATCGAAAATGAT
66 TACATCGAAGCAGATCGAAGATGAT
* *
105020128 AGATTTGGCATCTCCATATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCATCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
* * *
105020193 TACATCGAAACAGATCGAATATGAC
66 TACATCGAAGCAGATCGAAGATGAT
** *
105020218 AGATTTGGTGTCTCCATATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCATCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
*
105020283 TACATCGAAGCAGATCGAAGAT-AGC
66 TACATCGAAGCAGATCGAAGATGA-T
* * * *
105020308 AGATTTGGCGTCTCTGTATTTGACGAGGAG
1 AGATTTGGCATCTCCGTATTAGACGGGGAG
105020338 TAAATCAAAG
Statistics
Matches: 355, Mismatches: 34, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
89 1 0.00
90 354 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (90 bp):
AGATTTGGCATCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
TACATCGAAGCAGATCGAAGATGAT
Found at i:105021837 original size:25 final size:26
Alignment explanation
Indices: 105021796--105021845 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
105021786 ATATATATAC
105021796 ATATTTTTATAATTTATTTATTTTAA
1 ATATTTTTATAATTTATTTATTTTAA
105021822 ATATTTTGTAT-A-TTATTTATTTTA
1 ATATTTT-TATAATTTATTTATTTTA
105021846 CTTTAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 12 0.52
26 8 0.35
27 3 0.13
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (26 bp):
ATATTTTTATAATTTATTTATTTTAA
Found at i:105022486 original size:118 final size:111
Alignment explanation
Indices: 105022361--105022585 Score: 245
Period size: 111 Copynumber: 2.0 Consensus size: 111
105022351 TTATTTATGT
** * *
105022361 TGTTATTTTAAG-TTATATTTGCATGAAATATTATTATATATATACTATGTAATTTATATTGTTA
1 TGTTA-TTTAAGATTATATCAGCATGAAATATTA--ATATATAT--TATGCAATTTATATCGTTA
* * * * *
105022425 TATTCATTATTTTTTATGTTGTATTTTACATGAAATGTTAATGTATGTATATTA
61 T-TT-ATCATTTTCTATATTATA-TTTACATGAAATGTTAAAGTATGTATATTA
* * * *
105022479 TGTTATTTATGATTATATCAGCATGAAATGTTAATGTATATTATGCAATTTATGTCGTTATTTAT
1 TGTTATTTAAGATTATATCAGCATGAAATATTAATATATATTATGCAATTTATATCGTTATTTAT
*
105022544 CATTTTCTATATTATATTTGCATGAAATGTTAAAGTATGTAT
66 CATTTTCTATATTATATTTACATGAAATGTTAAAGTATGTAT
105022586 CATGTAGTTT
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
111 24 0.26
112 14 0.15
113 2 0.02
114 17 0.18
116 7 0.08
117 5 0.05
118 23 0.25
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.52
Consensus pattern (111 bp):
TGTTATTTAAGATTATATCAGCATGAAATATTAATATATATTATGCAATTTATATCGTTATTTAT
CATTTTCTATATTATATTTACATGAAATGTTAAAGTATGTATATTA
Found at i:105023362 original size:21 final size:21
Alignment explanation
Indices: 105023338--105023386 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
105023328 CCCTTAAATA
* *
105023338 CTAAACATTAAATCCTAAACC
1 CTAAACATTAAAACATAAACC
**
105023359 CTAAATTTTAAAACATAAACC
1 CTAAACATTAAAACATAAACC
105023380 CTAAACA
1 CTAAACA
105023387 CTAATCTATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (21 bp):
CTAAACATTAAAACATAAACC
Found at i:105023636 original size:36 final size:36
Alignment explanation
Indices: 105023558--105023637 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 36
105023548 GTTTAAGGCC
*
105023558 TATGGTTTAAGGTTCAATGGTAGAATATATTTTAAGTT
1 TATGGTTTAAGGTTCAATGGT--AATATATGTTAAGTT
*
105023596 TATGGTTTAGGGTTCAATGGT-ATAGTATGTTAAGTT
1 TATGGTTTAAGGTTCAATGGTAATA-TATGTTAAGTT
105023632 TATGGT
1 TATGGT
105023638 ATGGGCTGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
35 3 0.08
36 16 0.41
38 20 0.51
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.45
Consensus pattern (36 bp):
TATGGTTTAAGGTTCAATGGTAATATATGTTAAGTT
Found at i:105024771 original size:40 final size:40
Alignment explanation
Indices: 105024682--105024794 Score: 131
Period size: 40 Copynumber: 2.8 Consensus size: 40
105024672 CTCCAGAGGC
* *
105024682 ATTAGCGGCGTTTTTCTAAAAACG-C-CATAAAGATCGAGA
1 ATTAGCGGCGCTTTTGTAAAAACGCCGCA-AAAGATCGAGA
* *
105024721 ATTAGGGGCGCTTTTGTAAAAACGCCGCAAAAGATTGAGA
1 ATTAGCGGCGCTTTTGTAAAAACGCCGCAAAAGATCGAGA
* * *
105024761 TTTAGTGGCGCTTTTGTAAAAACGCTGCTAAAAG
1 ATTAGCGGCGCTTTTGTAAAAACGCCGC-AAAAG
105024795 TTTAATTAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 21 0.33
40 36 0.56
41 7 0.11
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27
Consensus pattern (40 bp):
ATTAGCGGCGCTTTTGTAAAAACGCCGCAAAAGATCGAGA
Found at i:105027274 original size:19 final size:19
Alignment explanation
Indices: 105027250--105027377 Score: 194
Period size: 19 Copynumber: 6.9 Consensus size: 19
105027240 ATAATCTTCA
105027250 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105027269 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105027288 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105027305 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105027323 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105027342 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
105027359 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
105027378 GATTTAATTT
Statistics
Matches: 101, Mismatches: 2, Indels: 11
0.89 0.02 0.10
Matches are distributed among these distances:
17 31 0.31
18 17 0.17
19 44 0.44
20 9 0.09
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:105027315 original size:54 final size:54
Alignment explanation
Indices: 105027250--105027364 Score: 221
Period size: 54 Copynumber: 2.1 Consensus size: 54
105027240 ATAATCTTCA
105027250 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
105027305 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
105027359 ATGATT
1 ATGATT
105027365 TTGTAATCTT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 55 0.92
55 5 0.08
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (54 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:105032552 original size:14 final size:14
Alignment explanation
Indices: 105032533--105032603 Score: 81
Period size: 14 Copynumber: 4.9 Consensus size: 14
105032523 TTCTATTTCA
*
105032533 AAAAAAAGAAAAGG
1 AAAAAAAGAAAAAG
105032547 AAAAAAAG-AAAAG
1 AAAAAAAGAAAAAG
* *
105032560 AAAAAGAGAAAAAA
1 AAAAAAAGAAAAAG
105032574 AATAAAAAGAAAAAAG
1 AA-AAAAAG-AAAAAG
105032590 AGAAAAAAGAAAAA
1 A-AAAAAAGAAAAA
105032604 AATGGAGAGG
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
13 11 0.23
14 14 0.29
15 10 0.21
16 12 0.25
17 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.01
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:105032553 original size:9 final size:8
Alignment explanation
Indices: 105032533--105032605 Score: 69
Period size: 8 Copynumber: 8.9 Consensus size: 8
105032523 TTCTATTTCA
105032533 AAAAAAAG
1 AAAAAAAG
*
105032541 AAAAGGAAAA
1 AAAA--AAAG
105032551 AAAGAAAAG
1 AAA-AAAAG
*
105032560 AAAAAGAG
1 AAAAAAAG
105032568 AAAAAAA-
1 AAAAAAAG
*
105032575 ATAAAAAG
1 AAAAAAAG
105032583 -AAAAAAG
1 AAAAAAAG
105032590 AGAAAAAAG
1 A-AAAAAAG
105032599 AAAAAAA
1 AAAAAAA
105032606 TGGAGAGGCC
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
7 12 0.23
8 20 0.38
9 14 0.26
10 6 0.11
11 1 0.02
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (8 bp):
AAAAAAAG
Found at i:105032572 original size:22 final size:21
Alignment explanation
Indices: 105032541--105032602 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
105032531 CAAAAAAAAG
*
105032541 AAAAGGAAAAAAAGAAAAGAA
1 AAAAGAAAAAAAAGAAAAGAA
*
105032562 AAAGAGAAAAAAAATAAAAAGAA
1 AAA-AGAAAAAAAA-GAAAAGAA
*
105032585 AAAAGAGAAAAAAGAAAA
1 AAAAGAAAAAAAAGAAAA
105032603 AAATGGAGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 7 0.20
22 18 0.51
23 10 0.29
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (21 bp):
AAAAGAAAAAAAAGAAAAGAA
Found at i:105032603 original size:6 final size:6
Alignment explanation
Indices: 105032535--105032587 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
105032525 CTATTTCAAA
* * * *
105032535 AAAAAG AAAAGG AAAAAA AGAAAAG AAAAAG AGAAA- AAAAAT AAAAAG
1 AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAAAAG AAAAAG
105032583 AAAAA
1 AAAAA
105032588 AGAGAAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
5 4 0.11
6 29 0.76
7 5 0.13
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:105033786 original size:87 final size:87
Alignment explanation
Indices: 105033604--105034167 Score: 871
Period size: 87 Copynumber: 6.5 Consensus size: 87
105033594 AAGGACATCC
* * * * *
105033604 AAGATGATTTGGCATCTCTGAATTGTCAGGGAGTAGATCGAAGACATAGCTGATTTGGC--TCAC
1 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
* *
105033667 ATGTTTACATTGAAGCAAATCT
66 GTGTTTACGTTGAAGCAAATCT
* *
105033689 AAGATGATTTGGCGTTTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGACTTTCAC
1 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
*
105033754 ATGTTTACGTTGAAGCAAATCT
66 GTGTTTACGTTGAAGCAAATCT
* *
105033776 AAGATGATTTGGCATCTTTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
1 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
105033841 GTGTTTACGTTGAAGCAAATCT
66 GTGTTTACGTTGAAGCAAATCT
* * * *
105033863 AAGATGATTTAGCGTCTTTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGTTTTTAC
1 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
*
105033928 GTGTTTACATTGAAGCAAATCT
66 GTGTTTACGTTGAAGCAAATCT
* * *
105033950 AAGATGATTTGGCATCTATGTACTGTCAGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCAC
1 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
105034015 GTGTTTACGTTGAAGCAAATCT
66 GTGTTTACGTTGAAGCAAATCT
* * *
105034037 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGTAGATCGAAGACATAGCTGATTTGACTTTCAT
1 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
105034102 GTGTTTACGTTGAAGCAAATCT
66 GTGTTTACGTTGAAGCAAATCT
* * * *
105034124 AAGATGATTTGGCGTCTCTGTATTGGCAGAGAACAGATTGAAGA
1 AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGA
105034168 TGACTGATTT
Statistics
Matches: 441, Mismatches: 36, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
85 52 0.12
87 389 0.88
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (87 bp):
AAGATGATTTGGCGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
GTGTTTACGTTGAAGCAAATCT
Found at i:105034186 original size:44 final size:43
Alignment explanation
Indices: 105034128--105034799 Score: 408
Period size: 44 Copynumber: 15.3 Consensus size: 43
105034118 AAATCTAAGA
* * *
105034128 TGATTTGGCGTCTCTGTATTGGCAGAGAACAGATTGAAGATGAC
1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AC
* *
105034172 TGATTTGGCATCTCTGTATTCGGCGGAGAGCAAATCGAAGACATAGC
1 TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-C
* * * ** * * *
105034219 TGATTTGG-TTTTCATGTGTTTAC-GTTGAAGCAAATCTAAG--A-
1 TGATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATAC
* *
105034260 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAA
1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAC
* *
105034303 TAGATTTGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGATGAC
1 T-GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AC
* * * * *
105034348 AGATTTAGCATCTCTGTATTCGGCGGAGAGCAAATCGAAGACATAGT
1 TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-C
* * * ** *
105034395 TGATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAG--A-
1 TGATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAC
105034436 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGC
1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-C
* *
105034480 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGAC
1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AC
* * * * *
105034524 AGATTTGGCATCTCTATATTCGGCGGAGAGTAGATTGAAGACATAGC
1 TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-C
* * * ** *
105034571 TGATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAG--A-
1 TGATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAC
*
105034612 TGATTTGGCATCTCTGTATTGGCAGAGAACAGATCGAAGATAAC
1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AC
* * * * * *
105034656 AGATTTGACATCTTTGTATTGGCAGAGAGTAGATCAAAGATAA
1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAC
* *
105034699 TAGATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATAGA
1 T-GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-C
* ** * * *
105034744 AGATTTGGTGTCTCAGTATTGTCAGAGAGCA-AGTTGAAGATAGC
1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGA-TCGAAGATA-C
*
105034788 AGATTTGGCATC
1 TGATTTGGCATC
105034800 CCTATGTTTA
Statistics
Matches: 489, Mismatches: 93, Indels: 92
0.73 0.14 0.14
Matches are distributed among these distances:
39 12 0.02
40 34 0.07
41 37 0.08
42 6 0.01
43 7 0.01
44 250 0.51
45 49 0.10
46 10 0.02
47 65 0.13
48 14 0.03
49 5 0.01
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (43 bp):
TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAC
Found at i:105034216 original size:132 final size:130
Alignment explanation
Indices: 105034040--105034343 Score: 455
Period size: 132 Copynumber: 2.3 Consensus size: 130
105034030 CAAATCTAAG
* * * * *
105034040 ATGATTTGGCGTCTCTGTACTGTCAGAGAGTAGATCGAAGACATAGCTGATTTGACTTTCATGTG
1 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGACATAGCTGATTTGACTTTCATGTG
*
105034105 TTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAACAGATTGAAGATG
66 TTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAACAGATTGAAGAT-
105034170 A
130 A
* * **
105034171 CTGATTTGGCATCTCTGTATTCGGCGGAGAGCAAATCGAAGACATAGCTGATTTGGTTTTCATGT
1 ATGATTTGGCATCTCTGTATT-GGCAGAGAGCAAATCGAAGACATAGCTGATTTGACTTTCATGT
*
105034236 GTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGAT
65 GTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAACAGATTGAAGAT
105034301 A
130 A
* * *
105034302 ATAGATTTGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGA
1 AT-GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGA
105034344 TGACAGATTT
Statistics
Matches: 155, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
131 36 0.23
132 119 0.77
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (130 bp):
ATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGACATAGCTGATTTGACTTTCATGTG
TTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAACAGATTGAAGATA
Found at i:105034323 original size:176 final size:176
Alignment explanation
Indices: 105034129--105034739 Score: 947
Period size: 176 Copynumber: 3.5 Consensus size: 176
105034119 AATCTAAGAT
* ** *
105034129 GATTTGGCGTCTCTGTATTGGCAGAGAACAGATTGAAGATGACTGATTTGGCATCTCTGTATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* * * *
105034194 GCGGAGAGCAAATCGAAGACATAGCTGATTTGGTTTTCATGTGTTTACGTTGAAGCAAATCTAAG
66 GCGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
* *
105034259 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAATA
131 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
*
105034305 GATTTGGCATCTCTGTATTGGCAGA-AAGCAGATCAAAGATGACAGATTTAGCATCTCTGTATTC
1 GATTTGGCATCTCTGTATTGGCAGAGAA-CAGATCAAAGATGACAGATTTGGCATCTCTGTATTC
*
105034369 GGCGGAGAGCAAATCGAAGACATAGTTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
65 GGCGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
*
105034434 GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
130 GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* *
105034481 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTATATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* * *
105034546 GCGGAGAGTAGATTGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
66 GCGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
*
105034611 ATGATTTGGCATCTCTGTATTGGCAGAGAACAGATCGAAGATAACA
131 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * ** * * *
105034657 GATTTGACATCTTTGTATTGGCAGAGAGTAGATCAAAGATAATAGATTTGGCATCTTTGTATT-G
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* *
105034721 GCAGAGAGCAGATCGAAGA
66 GCGGAGAGCAAATCGAAGA
105034740 TAGAAGATTT
Statistics
Matches: 401, Mismatches: 32, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
175 19 0.05
176 381 0.95
177 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (176 bp):
GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
GCGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
Found at i:105034825 original size:44 final size:44
Alignment explanation
Indices: 105034777--105034933 Score: 158
Period size: 44 Copynumber: 3.5 Consensus size: 44
105034767 AGAGAGCAAG
*
105034777 TTGAAGATAGCAGATTTGGCATCCCTATGTTTACAGGGAACAGA
1 TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAGGGAACAGA
* * * * *
105034821 TTGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
1 TTGAAG--ATAGCAGATTTGGCATCCCTGTGTTTACAGGGAA-CAGA
** *
105034868 TTGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACA-A
1 TTGAAGATAGCAG-ATTTGGCATCCCTGTGTTTACAGGGAACAGA
*
105034910 GTTGAAGATAGTAGATTTGGCATC
1 -TTGAAGATAGCAGATTTGGCATC
105034934 TCCATATTCG
Statistics
Matches: 90, Mismatches: 16, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
42 2 0.02
43 12 0.13
44 32 0.36
45 5 0.06
46 29 0.32
47 10 0.11
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAGGGAACAGA
Found at i:105034857 original size:46 final size:47
Alignment explanation
Indices: 105034783--105034874 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 47
105034773 CAAGTTGAAG
* * * *
105034783 ATAGCAGATTTGGCATCCCTATGTTTACAGGGAA-CAGATTGAAGAC
1 ATAGCAGATCTGACATCCCTATGCTTACAGCGAAGCAGATTGAAGAC
* *
105034829 ATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGA
1 ATAGCAGATCTGACATCCCTATGCTTACAGCGAAGCAGATTGAAGA
105034875 TTTCAGCATG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 28 0.72
47 11 0.28
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (47 bp):
ATAGCAGATCTGACATCCCTATGCTTACAGCGAAGCAGATTGAAGAC
Found at i:105035078 original size:45 final size:45
Alignment explanation
Indices: 105034997--105035196 Score: 267
Period size: 45 Copynumber: 4.5 Consensus size: 45
105034987 TTTACATCGA
* * * *
105034997 AGCAGATCCAAGATGATAGATTTGGCATCTTTGTATTAGACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
105035042 AGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* ** * *
105035087 AACAGATTGAAGA-AGCAAATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
**
105035131 AGCAGATCAAAGATAACAGATTTGGTGTCTCTGTATTAGACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
105035176 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAACAGAT
105035197 ATCGCCTTCA
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
44 39 0.29
45 94 0.71
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:105035122 original size:89 final size:89
Alignment explanation
Indices: 105035016--105035182 Score: 280
Period size: 89 Copynumber: 1.9 Consensus size: 89
105035006 AAGATGATAG
* *
105035016 ATTTGGCATCTTTGTATTAGACGGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGATTTGGCATCTCTGTATTAG
105035081 ACGGGGAACAGATTGAAGAAGCAA
66 ACGGGGAACAGATTGAAGAAGCAA
* **
105035105 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAGATTTGGTGTCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGATTTGGCATCTCTGTATTAG
*
105035170 ACGGGGAGCAGAT
66 ACGGGGAACAGAT
105035183 CAAAGATAGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (89 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGATTTGGCATCTCTGTATTAG
ACGGGGAACAGATTGAAGAAGCAA
Found at i:105035226 original size:89 final size:89
Alignment explanation
Indices: 105035021--105035201 Score: 236
Period size: 89 Copynumber: 2.0 Consensus size: 89
105035011 GATAGATTTG
* * * *
105035021 GCATCTTTGTATTAGACGGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTAGACGGG
1 GCATCTCTGTATTAGACGGGAAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGG
** * *
105035086 GAACAGATTGAAGAAGCAAATTTG
66 GAACAGATCAAAGAAGCAAATATC
* **
105035110 GCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAGATTTGGTGTCTCTGTATTAGACGGG
1 GCATCTCTGTATTAGACGGGAAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGG
* *
105035175 GAGCAGATCAAAGATAGCAGATATC
66 GAACAGATCAAAGA-AGCAAATATC
105035200 GC
1 GC
105035202 CTTCATGATT
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 71 0.89
90 9 0.11
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.25
Consensus pattern (89 bp):
GCATCTCTGTATTAGACGGGAAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGG
GAACAGATCAAAGAAGCAAATATC
Found at i:105035544 original size:19 final size:19
Alignment explanation
Indices: 105035496--105035550 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
105035486 ATAATCTTCA
105035496 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105035515 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
105035533 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
105035551 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:105035576 original size:22 final size:22
Alignment explanation
Indices: 105035496--105035559 Score: 79
Period size: 18 Copynumber: 3.2 Consensus size: 22
105035486 ATAATCTTCA
105035496 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
105035515 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
105035533 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
105035555 ATGAT
1 ATGAT
105035560 TTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
18 18 0.44
19 14 0.34
22 9 0.22
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:105036974 original size:24 final size:24
Alignment explanation
Indices: 105036942--105036990 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
105036932 GATTGTAATG
* *
105036942 TATATATATATCAATGTGCATATA
1 TATACATATATCAATATGCATATA
105036966 TATACATATATCAATATGCATATA
1 TATACATATATCAATATGCATATA
105036990 T
1 T
105036991 CTTGGGTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (24 bp):
TATACATATATCAATATGCATATA
Found at i:105037829 original size:23 final size:23
Alignment explanation
Indices: 105037799--105037860 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
105037789 AAAGTATTTG
105037799 GTTAAGAAAATTTATTTGATAAT
1 GTTAAGAAAATTTATTTGATAAT
*
105037822 GTTAAGAAAATTCATTTGATAAT
1 GTTAAGAAAATTTATTTGATAAT
**
105037845 AATAA-AAAATTTATTT
1 GTTAAGAAAATTTATTT
105037861 TTATTTCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 10 0.29
23 25 0.71
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.42
Consensus pattern (23 bp):
GTTAAGAAAATTTATTTGATAAT
Found at i:105038362 original size:17 final size:17
Alignment explanation
Indices: 105038342--105038383 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
105038332 GTAATACATC
* *
105038342 ATATTTATTAATTTTTG
1 ATATTTAATAATGTTTG
105038359 ATA-TTAATAATGTTTG
1 ATATTTAATAATGTTTG
105038375 AT-TTTAATA
1 ATATTTAATA
105038384 TTTAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (17 bp):
ATATTTAATAATGTTTG
Found at i:105038402 original size:10 final size:10
Alignment explanation
Indices: 105038387--105038424 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
105038377 TTTAATATTT
105038387 AATATTTTTA
1 AATATTTTTA
105038397 AATATTTTTA
1 AATATTTTTA
* *
105038407 AA-AATTATA
1 AATATTTTTA
105038416 AATATTTTT
1 AATATTTTT
105038425 TTATCAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
AATATTTTTA
Found at i:105038557 original size:9 final size:9
Alignment explanation
Indices: 105038545--105038620 Score: 109
Period size: 9 Copynumber: 8.6 Consensus size: 9
105038535 TATATCATAT
105038545 CATAACTTA
1 CATAACTTA
*
105038554 CATAATTTA
1 CATAACTTA
105038563 CATAACTTA
1 CATAACTTA
105038572 CATAACTTA
1 CATAACTTA
105038581 CATAACTTA
1 CATAACTTA
* *
105038590 GATAA-ATA
1 CATAACTTA
*
105038598 TATAACTTA
1 CATAACTTA
105038607 CATAACTTA
1 CATAACTTA
105038616 CATAA
1 CATAA
105038621 ATGTATATCA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
8 6 0.10
9 53 0.90
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:105038568 original size:18 final size:18
Alignment explanation
Indices: 105038545--105038648 Score: 104
Period size: 18 Copynumber: 5.8 Consensus size: 18
105038535 TATATCATAT
105038545 CATAACTTACATAATTTA
1 CATAACTTACATAATTTA
*
105038563 CATAACTTACATAACTTA
1 CATAACTTACATAATTTA
* *
105038581 CATAACTTAGATAA-ATA
1 CATAACTTACATAATTTA
* *
105038598 TATAACTTACATAACTTA
1 CATAACTTACATAATTTA
* * * *
105038616 CATAAATGTATATCATAT-
1 CATAACT-TACATAATTTA
105038634 CATAACTTACATAAT
1 CATAACTTACATAAT
105038649 ACATAAATAT
Statistics
Matches: 69, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
17 20 0.29
18 43 0.62
19 6 0.09
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (18 bp):
CATAACTTACATAATTTA
Found at i:105038638 original size:53 final size:54
Alignment explanation
Indices: 105038541--105038654 Score: 130
Period size: 53 Copynumber: 2.2 Consensus size: 54
105038531 AATATATATC
* * *
105038541 ATATCATAACTTACATAATTTACATAACTTACATAACTTACATAACTTAGATAA
1 ATATCATAACTTACATAACTTACATAAATTACATAACTTACATAACTTACATAA
* *
105038595 ATAT-ATAACTTACATAACTTACATAAATGT--ATATCATATCATAACTTACAT-A
1 ATATCATAACTTACATAACTTACATAAAT-TACATAACTTA-CATAACTTACATAA
105038647 ATA-CATAA
1 ATATCATAA
105038655 ATATATATCA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
52 14 0.27
53 33 0.63
54 5 0.10
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (54 bp):
ATATCATAACTTACATAACTTACATAAATTACATAACTTACATAACTTACATAA
Found at i:105038660 original size:27 final size:27
Alignment explanation
Indices: 105038581--105038666 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 27
105038571 ACATAACTTA
* * *
105038581 CATAACTTAGATAAATATATAA-CTTA-
1 CATAACTTACATAAACATA-AATCATAT
** *
105038607 CATAACTTACATAAATGTATATCATAT
1 CATAACTTACATAAACATAAATCATAT
*
105038634 CATAACTTACATAATACATAAATATATAT
1 CATAACTTACATAA-ACATAAAT-CATAT
105038663 CATA
1 CATA
105038667 TCATATTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.02
26 20 0.42
27 14 0.29
28 5 0.10
29 8 0.17
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (27 bp):
CATAACTTACATAAACATAAATCATAT
Found at i:105038774 original size:7 final size:7
Alignment explanation
Indices: 105038762--105038786 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
105038752 ACACCCATTA
105038762 GATACTT
1 GATACTT
105038769 GATACTT
1 GATACTT
105038776 GATACTT
1 GATACTT
105038783 GATA
1 GATA
105038787 TGTATTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (7 bp):
GATACTT
Found at i:105043787 original size:13 final size:14
Alignment explanation
Indices: 105043771--105043802 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
105043761 TTATTATAAA
105043771 TAATTATAAT-GTT
1 TAATTATAATGGTT
105043784 TAATTATAATGGTT
1 TAATTATAATGGTT
105043798 TAATT
1 TAATT
105043803 CGTCGTTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (14 bp):
TAATTATAATGGTT
Found at i:105044539 original size:31 final size:31
Alignment explanation
Indices: 105044497--105044562 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
105044487 TGTATTTTTT
*
105044497 ATGTTACATTTGCTATTTTTGGTTGGATTTC
1 ATGTTACATTTGCTATTTTTGGTTGGATTTA
* *
105044528 ATGTTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGTTACATTTGCTATTTTTGGTTGGATTTA
105044559 ATGT
1 ATGT
105044563 AGGAAGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.17, C:0.06, G:0.21, T:0.56
Consensus pattern (31 bp):
ATGTTACATTTGCTATTTTTGGTTGGATTTA
Found at i:105047766 original size:22 final size:24
Alignment explanation
Indices: 105047723--105047781 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
105047713 GTTGGTTTAG
* *
105047723 TATTTT-TTTAATTTCATTA-TTT
1 TATTTTATTTTATTTCATAATTTT
105047745 TATTTTATTTTATTTCA-AATTTT
1 TATTTTATTTTATTTCATAATTTT
*
105047768 TAGTTTA-TTTATTT
1 TATTTTATTTTATTT
105047782 TCTCTTCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (24 bp):
TATTTTATTTTATTTCATAATTTT
Found at i:105049492 original size:6 final size:6
Alignment explanation
Indices: 105049471--105049558 Score: 63
Period size: 6 Copynumber: 14.3 Consensus size: 6
105049461 ATTGAGTCTA
* * * *
105049471 TTTATC TTTATGT TTTTTT TTTGTTT TTTATC TTTATT TTTATT TTTA-T
1 TTTATT TTTAT-T TTTATT TTT-ATT TTTATT TTTATT TTTATT TTTATT
** *
105049520 TTTCCT TTGATT TTTATT TTTATT TTGT-TT TTCTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT-TATT TT-TATT TT
105049559 GAACTTTATT
Statistics
Matches: 66, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
5 4 0.06
6 47 0.71
7 15 0.23
ACGTcount: A:0.11, C:0.06, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:105049507 original size:26 final size:25
Alignment explanation
Indices: 105049471--105049545 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 25
105049461 ATTGAGTCTA
* *
105049471 TTTATCTTTATGTTTTTTTTTTGTTT
1 TTTATCTTTAT-TTTTATTTTTATTT
105049497 TTTATCTTTATTTTTATTTTTA--T
1 TTTATCTTTATTTTTATTTTTATTT
*
105049520 TTT-CCTTTGATTTTTATTTTTATTT
1 TTTATCTTT-ATTTTTATTTTTATTT
105049545 T
1 T
105049546 GTTTTTCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
22 4 0.09
23 17 0.40
25 11 0.26
26 11 0.26
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.79
Consensus pattern (25 bp):
TTTATCTTTATTTTTATTTTTATTT
Found at i:105053559 original size:40 final size:40
Alignment explanation
Indices: 105053483--105053626 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
105053473 TAACTCATTC
* *
105053483 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
105053523 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* ** ** *
105053563 AAGGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATATTA-AAAC-TCGCACA
*
105053604 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
105053627 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.07
40 70 0.80
41 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:105061383 original size:40 final size:40
Alignment explanation
Indices: 105061307--105061412 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
105061297 TAACTCATTC
* *
105061307 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
105061347 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* **
105061387 AAGGCCTTC-GGACTTAGTCCGGATAT
1 AATGCCTTCGGGACTTAACCCGGATAT
105061413 AGTCCGCTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 15 0.26
40 42 0.74
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:105069230 original size:40 final size:40
Alignment explanation
Indices: 105069154--105069297 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
105069144 TAACTCATTC
* *
105069154 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
105069194 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* ** ** *
105069234 AAGGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATATTA-AAAC-TCGCACA
*
105069275 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
105069298 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.07
40 70 0.80
41 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:105083768 original size:46 final size:45
Alignment explanation
Indices: 105083715--105083890 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
105083705 TATTTGGGCA
*
105083715 TCCGAACTCGTTGTGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
105083761 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
105083808 TCCGAGCTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
105083854 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
105083891 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:105083870 original size:93 final size:93
Alignment explanation
Indices: 105083711--105083882 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
105083701 AGGATATTTG
* * * *
105083711 GGCATCCGAACTCGTTGTGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
105083776 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* *
105083804 GGCATCCGAGCTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
105083869 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
105083883 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:105087142 original size:46 final size:46
Alignment explanation
Indices: 105087092--105087264 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
105087082 TGGTTGAGCA
105087092 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
105087138 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
105087183 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
105087231 CCCGAGCAT-GTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAAC-TCGTTGAGTTGAGTCCGAGTTCACTTA
105087265 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 30 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:105087248 original size:93 final size:93
Alignment explanation
Indices: 105087089--105087259 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
105087079 GGATGGTTGA
* *
105087089 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105087154 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
105087182 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCAT-GTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAAC-TCGTTGAG
105087246 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
105087260 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:105089414 original size:17 final size:18
Alignment explanation
Indices: 105089383--105089418 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
105089373 TATGGGCTGA
105089383 AATAGGCTGTGTGGGCCC
1 AATAGGCTGTGTGGGCCC
105089401 AATAGGCT-TGTGGGCCC
1 AATAGGCTGTGTGGGCCC
105089418 A
1 A
105089419 CACATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.19, C:0.22, G:0.36, T:0.22
Consensus pattern (18 bp):
AATAGGCTGTGTGGGCCC
Found at i:105095663 original size:13 final size:13
Alignment explanation
Indices: 105095642--105095691 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
105095632 CTGTTTTCAT
* *
105095642 ACGGTCGTGTTAC
1 ACGGCCGTGTCAC
*
105095655 ACGGCCGTGTCGC
1 ACGGCCGTGTCAC
*
105095668 ACGGCCGTGTCGC
1 ACGGCCGTGTCAC
*
105095681 ACGACCGTGTC
1 ACGGCCGTGTC
105095692 TCCTCCCGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.12, C:0.34, G:0.34, T:0.20
Consensus pattern (13 bp):
ACGGCCGTGTCAC
Found at i:105098845 original size:13 final size:13
Alignment explanation
Indices: 105098827--105098852 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105098817 TTTTGTTTAT
105098827 CTAAACTAATTAA
1 CTAAACTAATTAA
105098840 CTAAACTAATTAA
1 CTAAACTAATTAA
105098853 GGGTGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CTAAACTAATTAA
Found at i:105101938 original size:15 final size:15
Alignment explanation
Indices: 105101918--105101946 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
105101908 GTATTGTTGC
105101918 TTGATAACACGGTGA
1 TTGATAACACGGTGA
105101933 TTGATAACACGGTG
1 TTGATAACACGGTG
105101947 TGTATGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:105107169 original size:6 final size:6
Alignment explanation
Indices: 105107158--105107209 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
105107148 TCTGTTTGTA
* * * * *
105107158 TTTATT TTTATT TTTATT TGTAGT TGTACT TTTATT TTTAGT TTTAGTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT
105107207 TTT
1 TTT
105107210 TTTGTTAAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
6 34 0.89
7 4 0.11
ACGTcount: A:0.15, C:0.02, G:0.10, T:0.73
Consensus pattern (6 bp):
TTTATT
Found at i:105107192 original size:18 final size:18
Alignment explanation
Indices: 105107169--105107214 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
105107159 TTATTTTTAT
105107169 TTTTATTTGTAGTTGTAC
1 TTTTATTTGTAGTTGTAC
* * *
105107187 TTTTATTTTTAGTTTTAG
1 TTTTATTTGTAGTTGTAC
*
105107205 TTTTTTTTGT
1 TTTTATTTGT
105107215 TAAACTTCTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.02, G:0.13, T:0.72
Consensus pattern (18 bp):
TTTTATTTGTAGTTGTAC
Found at i:105109191 original size:33 final size:33
Alignment explanation
Indices: 105109154--105109221 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
105109144 TGATACAATA
105109154 CTTAATCAGTGCATGTTTAATCTTCTAAGGTAG
1 CTTAATCAGTGCATGTTTAATCTTCTAAGGTAG
105109187 CTTAATCAGTGCATGTTTAATCTTCTAAGGTAG
1 CTTAATCAGTGCATGTTTAATCTTCTAAGGTAG
105109220 CT
1 CT
105109222 GAGGGTTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (33 bp):
CTTAATCAGTGCATGTTTAATCTTCTAAGGTAG
Found at i:105113340 original size:30 final size:30
Alignment explanation
Indices: 105113269--105113346 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
105113259 CCTCAAGGGT
* *
105113269 TGGCCACATGCCCGTGTGAGCTACATGGGC
1 TGGCCACATGTCCGTGTGAGCCACATGGGC
**
105113299 TGGCTTCATGTCCGTGTGAGCCACATGGGC
1 TGGCCACATGTCCGTGTGAGCCACATGGGC
* * *
105113329 TTGCCAAATGTCCATGTG
1 TGGCCACATGTCCGTGTG
105113347 CTAGCCCATG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.26
Consensus pattern (30 bp):
TGGCCACATGTCCGTGTGAGCCACATGGGC
Found at i:105114452 original size:23 final size:22
Alignment explanation
Indices: 105114412--105114454 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
105114402 TAATTTAGCC
105114412 TTTTATTTTTATTGAATTTTAT
1 TTTTATTTTTATTGAATTTTAT
* *
105114434 TTTTGTTTTTAGTTTAATTTT
1 TTTTATTTTTA-TTGAATTTT
105114455 TACATTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (22 bp):
TTTTATTTTTATTGAATTTTAT
Found at i:105116184 original size:49 final size:48
Alignment explanation
Indices: 105115989--105116254 Score: 175
Period size: 45 Copynumber: 5.7 Consensus size: 48
105115979 TTATGAGAGC
* * * * * *
105115989 CAGTGTAAGATCATGTCTAGGACATGGCATCGGCATTGA-GACAAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATG-GATGAGT
* * * *
105116036 CTAGT-TAAGA-CATGTCTGGCATAT-GCATCGGCCTCG-T-GATGAAG-
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATGGATG-AGT
* * *
105116080 CTAGTGTAAGA-CATGTCTGGGACA-AGCGTCAG-C-T-ACGAGATGAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATG-GATGAGT
* *
105116125 CAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTTGATTTTGAT-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGA--TGGATGAGT
* * * *
105116174 CAATGTAAGACCATGTCTAGGACATGGCATC-GACTTGATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATGGATGAGT
* *
105116221 CAGTGTAAGACCATGTTTGGGAAATGGCATCAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGC
105116255 ATTACGCCCT
Statistics
Matches: 174, Mismatches: 27, Indels: 35
0.74 0.11 0.15
Matches are distributed among these distances:
43 2 0.01
44 19 0.11
45 49 0.28
46 22 0.13
47 36 0.21
48 11 0.06
49 32 0.18
50 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGATGGATGAGT
Found at i:105116248 original size:47 final size:49
Alignment explanation
Indices: 105116118--105116253 Score: 170
Period size: 49 Copynumber: 2.8 Consensus size: 49
105116108 TCAGCTACGA
* * *
105116118 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTTGATTTT
1 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTTGA-TTG
* *
105116168 GAT-AGTCAATGTAAGACCATGTCTAGGACATGGCATC-GACTTGA-TG
1 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTTGATTG
* * *
105116214 GATGAGCCAGTGTAAGACCATGTTTGGGAAATGGCATCAG
1 GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAG
105116254 CATTACGCCC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 4 0.05
47 29 0.39
48 7 0.09
49 31 0.42
50 3 0.04
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (49 bp):
GATGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTTGATTG
Found at i:105117031 original size:15 final size:13
Alignment explanation
Indices: 105116995--105117030 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
105116985 GTAGACACAC
105116995 GGGCGTGTGTCTA
1 GGGCGTGTGTCTA
105117008 GGGCGTGTGTCTA
1 GGGCGTGTGTCTA
*
105117021 GGCCGTGTGT
1 GGGCGTGTGT
105117031 GACACAAGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.06, C:0.17, G:0.47, T:0.31
Consensus pattern (13 bp):
GGGCGTGTGTCTA
Found at i:105120270 original size:8 final size:8
Alignment explanation
Indices: 105120249--105120280 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
105120239 TTTTATAAGA
105120249 TATTTTA-
1 TATTTTAT
105120256 T-TTTTAT
1 TATTTTAT
105120263 TATTTTAT
1 TATTTTAT
105120271 TATTTTAT
1 TATTTTAT
105120279 TA
1 TA
105120281 GTATATAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
6 5 0.22
7 2 0.09
8 16 0.70
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TATTTTAT
Found at i:105121285 original size:43 final size:43
Alignment explanation
Indices: 105121224--105121323 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 43
105121214 TTTTGTTGAA
105121224 AAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATAT
1 AAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATAT
* * *
105121267 AAAAAATGCCG-TCAAAGACCAGGATTTTTAGCGGCGCTT-TTT
1 AAAAAACGCCGCT-AAAGACCAGGACTTTTAGCGGCGCTTATAT
*
105121309 TAAAAACGCCGCTAA
1 AAAAAACGCCGCTAA
105121324 TTTGCCCAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
42 14 0.28
43 36 0.72
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATAT
Found at i:105121642 original size:21 final size:21
Alignment explanation
Indices: 105121616--105121663 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
105121606 TTTTGTTCTT
105121616 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
105121637 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
105121658 CTCCGC
1 CTCCGC
105121664 TCTAAGTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.00, C:0.58, G:0.19, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:105127255 original size:39 final size:38
Alignment explanation
Indices: 105127223--105127374 Score: 188
Period size: 39 Copynumber: 4.1 Consensus size: 38
105127213 TATGTAAGCT
105127223 GTTATGT-ACGTTATGT-G-AGTTATGTAAATTATGTAA
1 GTTATGTGA-GTTATGTAGTAGTTATGTAAATTATGTAA
*
105127259 GTTATGTGAGTTATGTAAGTTGTTATGTAAATTATGTAA
1 GTTATGTGAGTTATGT-AGTAGTTATGTAAATTATGTAA
*
105127298 GTTATGTGAGTTATGTAAGTTGTTATGTAAATTATGTAA
1 GTTATGTGAGTTATGT-AGTAGTTATGTAAATTATGTAA
* * * *
105127337 TTTATATGAGTTATGTA--AGTTATGTAATTTATTTAA
1 GTTATGTGAGTTATGTAGTAGTTATGTAAATTATGTAA
105127373 GT
1 GT
105127375 AATGATCAAT
Statistics
Matches: 105, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
36 31 0.30
37 1 0.01
38 2 0.02
39 71 0.68
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (38 bp):
GTTATGTGAGTTATGTAGTAGTTATGTAAATTATGTAA
Found at i:105127284 original size:57 final size:56
Alignment explanation
Indices: 105127208--105127374 Score: 178
Period size: 57 Copynumber: 2.9 Consensus size: 56
105127198 ATGTATTAGT
* *
105127208 TAAGTTATGTAAGCTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTA-GTTATGTAAGTTATGTAAATTATGTAAGTTATG
* * * *
105127265 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGTTATG
1 TAAGTTATGTAAGTTGTTATGT-AGTTATGTAAGTTATGTAAATTATGTAA---GTTATG
* * *
105127325 TAAATTATGTAA-TT-TATATG-AGTTATGTAAGTTATGTAATTTATTTAAGT
1 TAAGTTATGTAAGTTGT-TATGTAGTTATGTAAGTTATGTAAATTATGTAAGT
105127375 AATGATCAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
54 2 0.02
57 67 0.72
58 2 0.02
59 6 0.06
60 16 0.17
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (56 bp):
TAAGTTATGTAAGTTGTTATGTAGTTATGTAAGTTATGTAAATTATGTAAGTTATG
Found at i:105127318 original size:9 final size:9
Alignment explanation
Indices: 105127208--105127374 Score: 145
Period size: 9 Copynumber: 17.6 Consensus size: 9
105127198 ATGTATTAGT
105127208 TAAGTTATG
1 TAAGTTATG
105127217 TAAGCTGTTATG
1 TAA---GTTATG
*
105127229 TACGTTATG
1 TAAGTTATG
*
105127238 TGAGTTATG
1 TAAGTTATG
*
105127247 TAAATTATG
1 TAAGTTATG
105127256 TAAGTTATG
1 TAAGTTATG
*
105127265 TGAGTTATG
1 TAAGTTATG
105127274 TAAGTTGTTATG
1 TAA---GTTATG
*
105127286 TAAATTATG
1 TAAGTTATG
105127295 TAAGTTATG
1 TAAGTTATG
*
105127304 TGAGTTATG
1 TAAGTTATG
105127313 TAAGTTGTTATG
1 TAA---GTTATG
*
105127325 TAAATTATG
1 TAAGTTATG
* *
105127334 TAATTTATA
1 TAAGTTATG
*
105127343 TGAGTTATG
1 TAAGTTATG
105127352 TAAGTTATG
1 TAAGTTATG
* *
105127361 TAATTTATT
1 TAAGTTATG
105127370 TAAGT
1 TAAGT
105127375 AATGATCAAT
Statistics
Matches: 127, Mismatches: 22, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
9 101 0.80
12 26 0.20
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Done.