Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 315 of 349
Found at i:105127363 original size:48 final size:48
Alignment explanation
Indices: 105127208--105127363 Score: 170
Period size: 48 Copynumber: 3.2 Consensus size: 48
105127198 ATGTATTAGT
* * * * *
105127208 TAAGTTATGTAAGCTGTTATGTACGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAATTATGTAAGTTATG
* * * *
105127256 TAAGTTATGTGAGTTATGTAAGT-TGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGT-TATGTAAGTTATGTAAATTATGTAAGTTATG
* * * * *
105127304 TGAGTTATGTAAGTTGTTATGTAAATTATGTAATTTATATGAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAATTATGTAAGTTATG
105127352 TAAGTTATGTAA
1 TAAGTTATGTAA
105127364 TTTATTTAAG
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
47 4 0.05
48 80 0.91
49 4 0.05
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (48 bp):
TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAATTATGTAAGTTATG
Found at i:105127978 original size:240 final size:241
Alignment explanation
Indices: 105127555--105128281 Score: 1330
Period size: 241 Copynumber: 3.0 Consensus size: 241
105127545 TTAAGGTTAT
* *
105127555 ATAAATATTCAATAGTAAATGAGATCGATATAACTTTTTCAAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
105127620 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
105127685 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAG-GAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
105127749 GGTCAGCTATTGGTGTAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
*
105127795 ATAAATATTCAATAGTAAATGAGATCGATAGAACCTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
105127860 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
* *
105127925 ACTCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTAGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
* *
105127990 GGTCAGCTACTGTTGAAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
* *
105128036 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
105128101 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
* *
105128166 ACCCGTCAGGTTTCCAGCTTATATACTTTGAATCTTTAAAATATTTAAAATAATGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
105128231 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
105128277 ATAAA
1 ATAAA
105128282 ATTAATTCAT
Statistics
Matches: 468, Mismatches: 18, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
240 186 0.40
241 282 0.60
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
Found at i:105133252 original size:30 final size:30
Alignment explanation
Indices: 105133197--105133253 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
105133187 CAAGAAAACC
* *
105133197 GAATAAAGAAATCCAAGATAGAGAAACTCA
1 GAATAAAGAAACCCAAGATAAAGAAACTCA
105133227 GAATAAAGAAACCC-AGAGTAAAGAAAC
1 GAATAAAGAAACCCAAGA-TAAAGAAAC
105133254 CCAAGATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAACCCAAGATAAAGAAACTCA
Found at i:105133254 original size:15 final size:15
Alignment explanation
Indices: 105133200--105133256 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
105133190 GAAAACCGAA
*
105133200 TAAAGAAATCCA-AG
1 TAAAGAAACCCAGAG
* * *
105133214 ATAGAGAAACTCAGAA
1 -TAAAGAAACCCAGAG
105133230 TAAAGAAACCCAGAG
1 TAAAGAAACCCAGAG
105133245 TAAAGAAACCCA
1 TAAAGAAACCCA
105133257 AGATATGATA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 33 0.97
16 1 0.03
ACGTcount: A:0.56, C:0.18, G:0.16, T:0.11
Consensus pattern (15 bp):
TAAAGAAACCCAGAG
Found at i:105136320 original size:49 final size:49
Alignment explanation
Indices: 105136259--105136439 Score: 211
Period size: 49 Copynumber: 3.7 Consensus size: 49
105136249 TTGGTACGCA
* * *
105136259 TAGTAGCCTGCACATAGTACTACACATGCGACCAATAATCCTGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATAATCCGGTACACG
* * *
105136308 TAGTAGCTTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATAATCCGGTACACG
* * * ** * *
105136357 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT-TTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATAATCCGGTACACG
*
105136407 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
105136440 TCACAATAGA
Statistics
Matches: 115, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
48 1 0.01
49 74 0.64
50 37 0.32
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATAATCCGGTACACG
Found at i:105142000 original size:46 final size:46
Alignment explanation
Indices: 105141948--105142158 Score: 266
Period size: 46 Copynumber: 4.6 Consensus size: 46
105141938 GCTCTCTGAA
** *
105141948 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
* * *
105141994 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACGTG--
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
* * *
105142038 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
* * *
105142084 ATGAAAAGAACAAGACCATGGTTGAAAGATACCATGACAGCATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
* *
105142130 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAATAAGACCATGGTTGAAAGA
105142159 CACTATGGCA
Statistics
Matches: 149, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
44 42 0.28
45 1 0.01
46 106 0.71
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
Found at i:105142019 original size:21 final size:21
Alignment explanation
Indices: 105141949--105142020 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
105141939 CTCTCTGAAA
*
105141949 TGAAATGTGTAAGACCATGGT
1 TGAAATGTATAAGACCATGGT
*
105141970 TGAAA-G-ATACCATGACAACATGAT
1 TGAAATGTATA--A-GAC--CATGGT
105141994 ATGAAATGTATAAGACCATGGT
1 -TGAAATGTATAAGACCATGGT
105142016 TGAAA
1 TGAAA
105142021 GATACCATGG
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 11 0.28
22 8 0.20
24 8 0.20
25 6 0.15
26 1 0.03
27 3 0.08
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (21 bp):
TGAAATGTATAAGACCATGGT
Found at i:105142101 original size:90 final size:92
Alignment explanation
Indices: 105141958--105142173 Score: 283
Period size: 90 Copynumber: 2.4 Consensus size: 92
105141948 ATGAAATGTG
* * * * *
105141958 TAAGACCATGGTTGAAAGATACCATGACAACATGATATGAAATGTATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAACAAGACCATGGTTGAAAGA
* * *
105142023 TACCATGGCAACGTGA-TGAAAA-GAA
66 TACCATGACAACATGACAGAAAATGAA
*
105142048 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAACAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAACAAGACCATGGTTGAAAGA
* *
105142113 TACCATGACAGCATGACAGAAAATGAG
66 TACCATGACAACATGACAGAAAATGAA
* * * *
105142140 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
105142174 TCAAAGATAA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
90 72 0.67
91 5 0.05
92 31 0.29
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAACAAGACCATGGTTGAAAGA
TACCATGACAACATGACAGAAAATGAA
Found at i:105142984 original size:18 final size:18
Alignment explanation
Indices: 105142961--105142996 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
105142951 CCAATGAGAT
*
105142961 TGTGCATAGACTATTGAC
1 TGTGCATAGACTACTGAC
105142979 TGTGCATAGACTACTGAC
1 TGTGCATAGACTACTGAC
105142997 AGCTCAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (18 bp):
TGTGCATAGACTACTGAC
Found at i:105148505 original size:49 final size:48
Alignment explanation
Indices: 105148336--105148556 Score: 186
Period size: 50 Copynumber: 4.6 Consensus size: 48
105148326 TTGTGATGTA
*
105148336 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCGTCGG-CTACGAGATG-T
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCT-CGATATGAT
* ** * *
105148381 -GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGTGAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGC-C-TCGATATGAT
* * * *
105148430 AGCCAGTTTAAGAACATGTCTAGGACATGGCGTCGGCCTCGATTTCGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATAT-GAT
* * * * * *
105148479 AGTCAGTGTAAGACCATGTTTGGGACATGGCATC-GACTTGAT-GGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATATGAT
* *
105148525 GAGCAACTGTAAGACCATGTCTGGGACATGGC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGC
105148557 ATTGGAATTA
Statistics
Matches: 140, Mismatches: 27, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 9 0.06
47 27 0.19
48 15 0.11
49 31 0.22
50 32 0.23
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATATGAT
Found at i:105154206 original size:6 final size:6
Alignment explanation
Indices: 105154196--105154452 Score: 505
Period size: 6 Copynumber: 42.8 Consensus size: 6
105154186 TTTTATTTGT
*
105154196 TTTATT TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
1 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
105154244 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
1 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
105154292 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
1 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
105154340 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
1 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
105154388 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
1 TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
105154436 TTTATG TTTATG TTTAT
1 TTTATG TTTATG TTTAT
105154453 TGTTGTTTTT
Statistics
Matches: 250, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 250 1.00
ACGTcount: A:0.17, C:0.00, G:0.16, T:0.67
Consensus pattern (6 bp):
TTTATG
Found at i:105157954 original size:46 final size:45
Alignment explanation
Indices: 105157901--105158076 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
105157891 TATTTGGGCA
105157901 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
105157947 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
105157994 TCC-AAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
105158040 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
105158077 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:105158056 original size:93 final size:93
Alignment explanation
Indices: 105157897--105158068 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
105157887 AGGATATTTG
* * *
105157897 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
105157962 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
105157990 GGCATCC-AAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGA
105158054 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
105158069 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:105171403 original size:28 final size:29
Alignment explanation
Indices: 105171368--105171488 Score: 115
Period size: 28 Copynumber: 4.3 Consensus size: 29
105171358 ATAATGTGAT
*
105171368 TTGGGCCTGATGGGCCATGTGAATGAG-A
1 TTGGGCCTGATGGGCCATATGAATGAGAA
* *
105171396 TTGGGCCT-AGTGGGTCATATGAATGTGAA
1 TTGGGCCTGA-TGGGCCATATGAATGAGAA
* * *
105171425 TT-GGCCTTATAGGCCATATGAATGTGAA
1 TTGGGCCTGATGGGCCATATGAATGAGAA
** * *
105171453 TTTAGCCGGATGGGCCATATAAATGAG-A
1 TTGGGCCTGATGGGCCATATGAATGAGAA
105171481 TTGGGCCT
1 TTGGGCCT
105171489 AGTGGTCCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 8
0.77 0.14 0.08
Matches are distributed among these distances:
27 1 0.01
28 52 0.69
29 22 0.29
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATATGAATGAGAA
Found at i:105180230 original size:28 final size:29
Alignment explanation
Indices: 105180198--105180323 Score: 127
Period size: 29 Copynumber: 4.4 Consensus size: 29
105180188 TTTGGGCTGA
*
105180198 ATGGGCCATGTGAATGAGATTGGGTCTAG
1 ATGGGCCATATGAATGAGATTGGGTCTAG
*
105180227 -TGGGCCATATGAATGTGAATTGGGTCT-G
1 ATGGGCCATATGAATGAG-ATTGGGTCTAG
**
105180255 ATGGGCCATATGAACGTGA-ATTGGG-CCGG
1 ATGGGCCATATGAA--TGAGATTGGGTCTAG
* **
105180284 ATGGGCCATATAAATGAGATTGGACCTAG
1 ATGGGCCATATGAATGAGATTGGGTCTAG
105180313 -TGGGCCATATG
1 ATGGGCCATATG
105180324 CATGTATGTA
Statistics
Matches: 81, Mismatches: 9, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
27 3 0.04
28 32 0.40
29 44 0.54
31 2 0.02
ACGTcount: A:0.25, C:0.13, G:0.35, T:0.26
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTGGGTCTAG
Found at i:105180259 original size:29 final size:29
Alignment explanation
Indices: 105180177--105180299 Score: 137
Period size: 29 Copynumber: 4.3 Consensus size: 29
105180167 GTGAGCATGA
*
105180177 ATAT-AATGTGATTTGGG-CTGAATGGGCC
1 ATATGAATGTGAATTGGGTCTG-ATGGGCC
* *
105180205 ATGTGAATGAG-ATTGGGTCT-AGTGGGCC
1 ATATGAATGTGAATTGGGTCTGA-TGGGCC
105180233 ATATGAATGTGAATTGGGTCTGATGGGCC
1 ATATGAATGTGAATTGGGTCTGATGGGCC
* * *
105180262 ATATGAACGTGAATTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGTCTGATGGGCC
*
105180291 ATATAAATG
1 ATATGAATG
105180300 AGATTGGACC
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
27 1 0.01
28 23 0.29
29 55 0.69
30 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.34, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGTCTGATGGGCC
Found at i:105182065 original size:46 final size:48
Alignment explanation
Indices: 105181993--105182095 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
105181983 GACAGGACAG
* * * *
105181993 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
105182039 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
105182087 GACAGGAAT
1 GACAGGAAT
105182096 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:105182970 original size:5 final size:5
Alignment explanation
Indices: 105182960--105182998 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
105182950 AATTTGTGTG
*
105182960 TTATT TTATT TTTTCT TTATT TTATT TTATTT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTA-TT TTATT TT
105182999 TTTCACAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 21 0.70
6 9 0.30
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:105182979 original size:16 final size:16
Alignment explanation
Indices: 105182960--105182998 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
105182950 AATTTGTGTG
105182960 TTATTTTATTTT-TTCT
1 TTATTTTATTTTATT-T
105182976 TTATTTTATTTTATTT
1 TTATTTTATTTTATTT
105182992 TTATTTT
1 TTATTTT
105182999 TTTCACAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
TTATTTTATTTTATTT
Found at i:105187430 original size:16 final size:17
Alignment explanation
Indices: 105187395--105187434 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
105187385 AATTTGTGTG
105187395 TTATTTTAATTTTTTCT
1 TTATTTTAATTTTTTCT
105187412 TTATTTT-ATTTTATT-T
1 TTATTTTAATTTT-TTCT
105187428 TTATTTT
1 TTATTTT
105187435 TTTCACAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (17 bp):
TTATTTTAATTTTTTCT
Found at i:105199673 original size:24 final size:26
Alignment explanation
Indices: 105199634--105199688 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
105199624 TTTCTAGAAG
*
105199634 ATTTAGCTTTTTATTAGTAT-AATAT
1 ATTTAGCTATTTATTAGTATAAATAT
105199659 ATTTAGC-ATTTATTAGTATAAATAT
1 ATTTAGCTATTTATTAGTATAAATAT
105199684 ATTTA
1 ATTTA
105199689 TTATTTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (26 bp):
ATTTAGCTATTTATTAGTATAAATAT
Found at i:105201821 original size:13 final size:12
Alignment explanation
Indices: 105201795--105201827 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
105201785 TTAGTGTTTA
105201795 ATTA-TATTAGG
1 ATTATTATTAGG
105201806 ATTATTATTAAGG
1 ATTATTATT-AGG
105201819 ATTATTATT
1 ATTATTATT
105201828 TAGATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.20
12 4 0.20
13 12 0.60
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (12 bp):
ATTATTATTAGG
Found at i:105201869 original size:10 final size:10
Alignment explanation
Indices: 105201854--105201893 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
105201844 ATTTATTACC
105201854 ATTTATCTTT
1 ATTTATCTTT
*
105201864 AATTATCTTT
1 ATTTATCTTT
105201874 ATTTAT-TTGT
1 ATTTATCTT-T
105201884 ATTTATCTTT
1 ATTTATCTTT
105201894 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:105208636 original size:25 final size:25
Alignment explanation
Indices: 105208608--105208658 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
105208598 TAGAAACGTA
105208608 TATATAATTCTTGAGTAGACTATGT
1 TATATAATTCTTGAGTAGACTATGT
105208633 TATATAATTCTTGAGTAGACTATGT
1 TATATAATTCTTGAGTAGACTATGT
105208658 T
1 T
105208659 TCTAACTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (25 bp):
TATATAATTCTTGAGTAGACTATGT
Found at i:105209599 original size:18 final size:18
Alignment explanation
Indices: 105209548--105209601 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
105209538 ATTTTTCTTA
*
105209548 ACTTTAATTTATTATTTT
1 ACTTTATTTTATTATTTT
* *
105209566 TCATTT-TCTTTTTTATTTT
1 AC-TTTAT-TTTATTATTTT
105209585 ACTTTATTTTATTATTT
1 ACTTTATTTTATTATTT
105209602 ACTATTCTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 13 0.46
19 15 0.54
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (18 bp):
ACTTTATTTTATTATTTT
Found at i:105211132 original size:13 final size:12
Alignment explanation
Indices: 105211105--105211137 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
105211095 TTAATGTTTA
105211105 ATTA-TATTAGG
1 ATTATTATTAGG
105211116 ATTATTATTACGG
1 ATTATTATTA-GG
105211129 ATTATTATT
1 ATTATTATT
105211138 TAGATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.20
12 5 0.25
13 11 0.55
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (12 bp):
ATTATTATTAGG
Found at i:105211179 original size:10 final size:10
Alignment explanation
Indices: 105211165--105211203 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
105211155 TTTATTATCG
105211165 TTTATCTTTA
1 TTTATCTTTA
*
105211175 ATTATCTTTA
1 TTTATCTTTA
105211185 TTTAT-TTGTA
1 TTTATCTT-TA
105211195 TTTATCTTT
1 TTTATCTTT
105211204 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:105212837 original size:24 final size:24
Alignment explanation
Indices: 105212809--105212872 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
105212799 TATTTTTATA
*
105212809 CTAATAAATGTTAAATATATTATG
1 CTAATAAATGTTAAATATATTACG
* *
105212833 TTAATAAATGCTAAATATATTACG
1 CTAATAAATGTTAAATATATTACG
*
105212857 CTAATAAATATTAAAT
1 CTAATAAATGTTAAAT
105212873 TTTCTAGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (24 bp):
CTAATAAATGTTAAATATATTACG
Found at i:105216649 original size:41 final size:41
Alignment explanation
Indices: 105216622--105216800 Score: 236
Period size: 41 Copynumber: 4.4 Consensus size: 41
105216612 CGTTTTTTGC
* **
105216622 TAAAACGCCGCTAAAAA-CAGAGCAATAGCAGA-TTTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGC-GACGCTTTCGG
*
105216662 TAAAACGCCGCTAAAAACCAGAGCATTAGCTACGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGACGCTTTCGG
** *
105216703 TAAAGTGCCGCTAAAAACCAGAGCATTAGCTACGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGACGCTTTCGG
* * * *
105216744 TAAAGCGCCGCTAAAAACCAGAGTATTAGCGACGCTTTTGC
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGACGCTTTCGG
105216785 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
105216801 GTCATATAAC
Statistics
Matches: 125, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 18 0.14
41 107 0.86
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGAGCATTAGCGACGCTTTCGG
Found at i:105216987 original size:14 final size:14
Alignment explanation
Indices: 105216965--105217016 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
105216955 TTAATTATCA
*
105216965 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
105216979 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
105216993 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
105217007 TTAAGGTTTA
1 TTATGGTTTA
105217017 GGAGTTAATT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:105217081 original size:7 final size:7
Alignment explanation
Indices: 105217069--105217168 Score: 71
Period size: 7 Copynumber: 14.0 Consensus size: 7
105217059 TAGATATTAT
105217069 GGTTTAG
1 GGTTTAG
105217076 GGTTTAG
1 GGTTTAG
105217083 GGTTTAG
1 GGTTTAG
105217090 GG-TT-G
1 GGTTTAG
105217095 GAGTTTAAG
1 G-GTTT-AG
* *
105217104 GGGTAAG
1 GGTTTAG
105217111 GGTTTAG
1 GGTTTAG
*
105217118 GGTTAAG
1 GGTTTAG
*
105217125 TGTTTAG
1 GGTTTAG
*
105217132 TGTTTATG
1 GGTTTA-G
*
105217140 GG-ATAGG
1 GGTTTA-G
*
105217147 GGTTAAG
1 GGTTTAG
105217154 AGGTTTAG
1 -GGTTTAG
105217162 GGTTTAG
1 GGTTTAG
105217169 ATTAATTAGT
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
5 2 0.03
6 3 0.04
7 55 0.75
8 11 0.15
9 2 0.03
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (7 bp):
GGTTTAG
Found at i:105220540 original size:29 final size:29
Alignment explanation
Indices: 105220501--105220591 Score: 173
Period size: 29 Copynumber: 3.1 Consensus size: 29
105220491 GAGTCTGGAT
105220501 TTCAGCAATTTTTTAATGTAGTCAATGTTA
1 TTCAG-AATTTTTTAATGTAGTCAATGTTA
105220531 TTCAGAATTTTTTAATGTAGTCAATGTTA
1 TTCAGAATTTTTTAATGTAGTCAATGTTA
105220560 TTCAGAATTTTTTAATGTAGTCAATGTTA
1 TTCAGAATTTTTTAATGTAGTCAATGTTA
105220589 TTC
1 TTC
105220592 CGGTATAAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 56 0.92
30 5 0.08
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (29 bp):
TTCAGAATTTTTTAATGTAGTCAATGTTA
Found at i:105222324 original size:43 final size:43
Alignment explanation
Indices: 105222263--105222344 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
105222253 TAAAAATTTT
*
105222263 ATGACCTTTAGCGACGTTTTTGGGAGAAGCGCCGCTAAAGGTA
1 ATGACCTTTAGCGACGTTTGTGGGAGAAGCGCCGCTAAAGGTA
*
105222306 ATGACCTTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAA
1 ATGACCTTTAGCGACGTTTGTGGGAGAAGCGCCGCTAAA
105222345 AGTCACTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (43 bp):
ATGACCTTTAGCGACGTTTGTGGGAGAAGCGCCGCTAAAGGTA
Found at i:105230963 original size:12 final size:13
Alignment explanation
Indices: 105230941--105230977 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
105230931 GCGTGCAAAA
105230941 AAATTAT-TAAAT
1 AAATTATATAAAT
105230953 AAATT-TATAAA-
1 AAATTATATAAAT
105230964 AAATTATATAAAT
1 AAATTATATAAAT
105230977 A
1 A
105230978 TTAAATATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 6 0.27
12 15 0.68
13 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTATATAAAT
Found at i:105231387 original size:22 final size:22
Alignment explanation
Indices: 105231362--105231404 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
105231352 TAATTTTAAA
105231362 TTTATATTTATAT-TAATTATTT
1 TTTAT-TTTATATCTAATTATTT
105231384 TTTATTTTATATCTAATTATT
1 TTTATTTTATATCTAATTATT
105231405 ACAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATTTTATATCTAATTATTT
Found at i:105249060 original size:28 final size:28
Alignment explanation
Indices: 105249020--105249076 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
105249010 TCCGGTTTGC
105249020 TGTGAGGGTGCATTACTCATTGGTCTTT
1 TGTGAGGGTGCATTACTCATTGGTCTTT
105249048 TGTGAGGGTGCATTACTCATTGGTCTTT
1 TGTGAGGGTGCATTACTCATTGGTCTTT
105249076 T
1 T
105249077 CTTCCAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.14, G:0.28, T:0.44
Consensus pattern (28 bp):
TGTGAGGGTGCATTACTCATTGGTCTTT
Found at i:105251424 original size:47 final size:47
Alignment explanation
Indices: 105251355--105251478 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 47
105251345 GCCCCTAAGT
105251355 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
105251402 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
105251447 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
105251479 TCAACCATCC
Statistics
Matches: 68, Mismatches: 2, Indels: 13
0.82 0.02 0.16
Matches are distributed among these distances:
42 3 0.04
43 5 0.07
44 2 0.03
45 29 0.43
47 29 0.43
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:105251925 original size:29 final size:29
Alignment explanation
Indices: 105251893--105251951 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
105251883 ATTTAATACG
105251893 AACTTTGGAAAAATTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACACTTTTGCCCCT
* * *
105251922 AACTTTTGCATAATTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACACTTTTGCCCCT
105251951 A
1 A
105251952 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:105257149 original size:2 final size:2
Alignment explanation
Indices: 105257142--105257167 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
105257132 TTCATATAAT
105257142 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
105257168 TATATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:105257890 original size:21 final size:21
Alignment explanation
Indices: 105257842--105257887 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
105257832 TGCTTTCTCC
*
105257842 TTCTTTCCTTCTCTTTTTCTT
1 TTCTTTCCTTCTCTGTTTCTT
105257863 TTCTTTCCTT-TCTGTTTC-T
1 TTCTTTCCTTCTCTGTTTCTT
105257882 TTCTTT
1 TTCTTT
105257888 TTCGTTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.29
20 7 0.29
21 10 0.42
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (21 bp):
TTCTTTCCTTCTCTGTTTCTT
Found at i:105257894 original size:15 final size:15
Alignment explanation
Indices: 105257853--105257894 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
105257843 TCTTTCCTTC
*
105257853 TCTTTTTCTTTTCTT
1 TCTTTTTCGTTTCTT
*
105257868 TC-CTTTCTGTTTCTT
1 TCTTTTTC-GTTTCTT
105257883 TCTTTTTCGTTT
1 TCTTTTTCGTTT
105257895 GTTCTTTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 4 0.18
15 14 0.64
16 4 0.18
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (15 bp):
TCTTTTTCGTTTCTT
Found at i:105257926 original size:24 final size:24
Alignment explanation
Indices: 105257881--105257927 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
105257871 TTTCTGTTTC
*
105257881 TTTCTTTTTCGTTTGTTCTTTCTA
1 TTTCTTTTTCGTTTGTTATTTCTA
*
105257905 TTTCTTTTTC-TTTCTTTATTTCT
1 TTTCTTTTTCGTTT-GTTATTTCT
105257928 TATTATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (24 bp):
TTTCTTTTTCGTTTGTTATTTCTA
Found at i:105264627 original size:60 final size:60
Alignment explanation
Indices: 105264548--105264687 Score: 178
Period size: 60 Copynumber: 2.3 Consensus size: 60
105264538 CAGTGTTAAC
* *
105264548 TGGGCCTCAGCCCATATCAATATTAATCTGGGCCATAG-CTTCTTAC-AGT-ATCAGAGTATAT
1 TGGGCCT-AGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACGAGTCA--AGA-TATAT
* *
105264609 TGGGCCTAGCCCATATCAATATTAATCTGGGTCGTAGCCCTATTACGAGTCAAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACGAGTCAAGATATAT
*
105264669 TGGGCCTTGCCCATATCAA
1 TGGGCCTAGCCCATATCAA
105264688 CACAGTTGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
60 51 0.72
61 16 0.23
62 3 0.04
63 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACGAGTCAAGATATAT
Found at i:105264720 original size:19 final size:20
Alignment explanation
Indices: 105264677--105264732 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
105264667 ATTGGGCCTT
105264677 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
105264697 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
* *
105264716 GCCCATAACAAAACAGT
1 GCCCATATCAACACAGT
105264733 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:105267851 original size:21 final size:21
Alignment explanation
Indices: 105267827--105267913 Score: 88
Period size: 21 Copynumber: 4.1 Consensus size: 21
105267817 TGAGTGTGTG
*
105267827 CACGCCTATGTGGAGGCCATA
1 CACGCCTATGTGAAGGCCATA
*
105267848 CACG-CTAGTGTGAAGG-AACTA
1 CACGCCTA-TGTGAAGGCCA-TA
*
105267869 CACGCCTATGTGGAGGCCATA
1 CACGCCTATGTGAAGGCCATA
* * *
105267890 CACGCTTGTGTGAAGGCCCTA
1 CACGCCTATGTGAAGGCCATA
105267911 CAC
1 CAC
105267914 ACCCGTGTGG
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
20 4 0.07
21 46 0.85
22 4 0.07
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (21 bp):
CACGCCTATGTGAAGGCCATA
Found at i:105267923 original size:42 final size:42
Alignment explanation
Indices: 105267834--105267924 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
105267824 GTGCACGCCT
* *
105267834 ATGTGGAGGCCATACACGCTAGTGTGAAGGAACTACACGCCT
1 ATGTGGAGGCCATACACGCTAGTGTGAAGGAACTACACACCC
* **
105267876 ATGTGGAGGCCATACACGCTTGTGTGAAGGCCCTACACACCC
1 ATGTGGAGGCCATACACGCTAGTGTGAAGGAACTACACACCC
*
105267918 GTGTGGA
1 ATGTGGA
105267925 TGGGGCACAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (42 bp):
ATGTGGAGGCCATACACGCTAGTGTGAAGGAACTACACACCC
Found at i:105271699 original size:29 final size:28
Alignment explanation
Indices: 105271641--105271725 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
105271631 TACTTGTATC
* **
105271641 TGGCCCATTAAGCCCAATCTTATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
105271669 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
105271698 TGGCCCGTTAGGCCCATTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
105271726 ATCATGCTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 25 0.51
29 24 0.49
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:105271961 original size:16 final size:16
Alignment explanation
Indices: 105271937--105271971 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
105271927 ATAGCCAAAC
* *
105271937 TTTCGGCATTTCGGCT
1 TTTCAGCATTTCGACT
105271953 TTTCAGCATTTCGACT
1 TTTCAGCATTTCGACT
105271969 TTT
1 TTT
105271972 ACCGATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCAGCATTTCGACT
Found at i:105286651 original size:17 final size:18
Alignment explanation
Indices: 105286631--105286668 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
105286621 CTTCTTCAAC
* *
105286631 TTCTTTTTCA-ATTTCTT
1 TTCTGTTTCACATTCCTT
105286648 TTCTGTTTCACATTCCTT
1 TTCTGTTTCACATTCCTT
105286666 TTC
1 TTC
105286669 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.63
Consensus pattern (18 bp):
TTCTGTTTCACATTCCTT
Found at i:105289413 original size:24 final size:24
Alignment explanation
Indices: 105289381--105289428 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
105289371 ATAATAGCAT
105289381 TAGATACTTTCCCTTTACAACTGC
1 TAGATACTTTCCCTTTACAACTGC
105289405 TAGATACTTTCCCTTTACAACTGC
1 TAGATACTTTCCCTTTACAACTGC
105289429 AGCTTAAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (24 bp):
TAGATACTTTCCCTTTACAACTGC
Found at i:105303258 original size:25 final size:25
Alignment explanation
Indices: 105303205--105303316 Score: 86
Period size: 25 Copynumber: 4.5 Consensus size: 25
105303195 TGAGCGTCCC
* *
105303205 ATTATATGGCTCTTTGTGAGCTTCTTG
1 ATTA-ATGGCTCTCTG-GAGCTTCCTG
105303232 ATTAATGGCTCTCTGGAGCTTCCTG
1 ATTAATGGCTCTCTGGAGCTTCCTG
* ** * *
105303257 A-T-ATGGCTCGCTTAAACTTCCCG
1 ATTAATGGCTCTCTGGAGCTTCCTG
* **
105303280 A-TATATGGCTATCCAGAGCTTCCTG
1 ATTA-ATGGCTCTCTGGAGCTTCCTG
105303305 ATTAATGGCTCT
1 ATTAATGGCTCT
105303317 TCGGAGGTAT
Statistics
Matches: 67, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
23 18 0.27
24 1 0.01
25 32 0.48
26 12 0.18
27 4 0.06
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (25 bp):
ATTAATGGCTCTCTGGAGCTTCCTG
Found at i:105309739 original size:3 final size:3
Alignment explanation
Indices: 105309731--105309756 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
105309721 TGTTTGGGTT
105309731 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
105309757 TAGACAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:105309825 original size:14 final size:15
Alignment explanation
Indices: 105309806--105309846 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
105309796 ACTTATAATT
105309806 AAATTAATTAA-TCA
1 AAATTAATTAATTCA
*
105309820 AAATTAATTAATTTA
1 AAATTAATTAATTCA
105309835 AAATTTAATTAA
1 AAA-TTAATTAA
105309847 CTTACCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 11 0.46
15 5 0.21
16 8 0.33
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
AAATTAATTAATTCA
Found at i:105309901 original size:28 final size:28
Alignment explanation
Indices: 105309866--105309921 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
105309856 ATCAAGATTA
105309866 ATAAAATTGGTGAATTCCAATTGTCATT
1 ATAAAATTGGTGAATTCCAATTGTCATT
105309894 ATAAAATTGGTGAATTCCAATTGTCATT
1 ATAAAATTGGTGAATTCCAATTGTCATT
105309922 CACCACCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (28 bp):
ATAAAATTGGTGAATTCCAATTGTCATT
Found at i:105310417 original size:13 final size:14
Alignment explanation
Indices: 105310373--105310417 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
105310363 GTCATTATAA
*
105310373 AAATTAATTAAAAC
1 AAATAAATTAAAAC
105310387 AAATAAATTACGAAAC
1 AAATAAATTA--AAAC
105310403 AAA-AAATTAAAAC
1 AAATAAATTAAAAC
105310416 AA
1 AA
105310418 CAAGAATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 6 0.21
14 9 0.32
15 6 0.21
16 7 0.25
ACGTcount: A:0.69, C:0.09, G:0.02, T:0.20
Consensus pattern (14 bp):
AAATAAATTAAAAC
Found at i:105310425 original size:15 final size:13
Alignment explanation
Indices: 105310378--105310417 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 13
105310368 TATAAAAATT
105310378 AATTAAAACAAATA
1 AATTAAAACAAA-A
105310392 AATTACGAAACAAAA
1 AATTA--AAACAAAA
105310407 AATTAAAACAA
1 AATTAAAACAA
105310418 CAAGAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.25
14 5 0.21
15 6 0.25
16 7 0.29
ACGTcount: A:0.70, C:0.10, G:0.03, T:0.17
Consensus pattern (13 bp):
AATTAAAACAAAA
Found at i:105316442 original size:20 final size:21
Alignment explanation
Indices: 105316411--105316450 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
105316401 TATTTTTTTC
*
105316411 TAAAAATAATTTTGGTTTAAA
1 TAAAAATAATTTTGATTTAAA
105316432 TAAAAAT-ATTTTGATTTAA
1 TAAAAATAATTTTGATTTAA
105316451 TAGTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (21 bp):
TAAAAATAATTTTGATTTAAA
Found at i:105318266 original size:99 final size:100
Alignment explanation
Indices: 105318153--105318351 Score: 319
Period size: 100 Copynumber: 2.0 Consensus size: 100
105318143 GATTGAAATA
* * * *
105318153 TAACCTTTTGTTATTTGGGTGATAGAATATAATATTATCT-AAAAATATATTCTATTTGATTATT
1 TAACATTTTATTATTTGGGTGACAGAATATAATATTATCTAAAAAATATATTCTACTTGATTATT
105318217 TTTATTATAAAATTCATTTTTAAATATTTATAAGT
66 TTTATTATAAAATTCATTTTTAAATATTTATAAGT
* *
105318252 TAACATTTTATTATTTGGGTGACAGAATGTAATATTATCTAAAAAATATATTTTACTTGATTATT
1 TAACATTTTATTATTTGGGTGACAGAATATAATATTATCTAAAAAATATATTCTACTTGATTATT
* *
105318317 TTTATTATAAATTTTATTTTTAAATATTTATAAGT
66 TTTATTATAAAATTCATTTTTAAATATTTATAAGT
105318352 AAAGAAATTG
Statistics
Matches: 91, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 36 0.40
100 55 0.60
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.51
Consensus pattern (100 bp):
TAACATTTTATTATTTGGGTGACAGAATATAATATTATCTAAAAAATATATTCTACTTGATTATT
TTTATTATAAAATTCATTTTTAAATATTTATAAGT
Found at i:105319172 original size:31 final size:31
Alignment explanation
Indices: 105319137--105319206 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
105319127 TTAACAGTCT
* * *
105319137 AGTGACTTAAATAAAAACTTTCAAATATTTC
1 AGTGACTAAAATAAAAACTTCCAAATAGTTC
*
105319168 AGTGACTAAAATGAAAACTTCCAAATAGTTC
1 AGTGACTAAAATAAAAACTTCCAAATAGTTC
105319199 AGTGACTA
1 AGTGACTA
105319207 TTTTGTAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.30
Consensus pattern (31 bp):
AGTGACTAAAATAAAAACTTCCAAATAGTTC
Found at i:105321999 original size:12 final size:13
Alignment explanation
Indices: 105321961--105321999 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
105321951 CTGAATGATT
105321961 TTTCTCTTAATAAGG
1 TTTC-CTTAA-AAGG
105321976 TTTCCTTAAAAGG
1 TTTCCTTAAAAGG
105321989 TTTCC-TAAAAG
1 TTTCCTTAAAAG
105322000 TACTCTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 6 0.25
13 9 0.38
14 5 0.21
15 4 0.17
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (13 bp):
TTTCCTTAAAAGG
Found at i:105331146 original size:28 final size:28
Alignment explanation
Indices: 105331115--105331177 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
105331105 TCCCATATTA
105331115 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
** * *
105331143 ATGGGGTATAGGAAGGGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
105331171 ATGGGGT
1 ATGGGGT
105331178 TGATAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.06, G:0.32, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:105336567 original size:28 final size:28
Alignment explanation
Indices: 105336535--105336597 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
105336525 TCACATATTA
105336535 ATGGGGTATAAGAAAAGTCTCATAACTT
1 ATGGGGTATAAGAAAAGTCTCATAACTT
* ** * *
105336563 ATGGGGTATAGGAAGGGTTTTATAACTT
1 ATGGGGTATAAGAAAAGTCTCATAACTT
105336591 ATGGGGT
1 ATGGGGT
105336598 TGACAATGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAAGAAAAGTCTCATAACTT
Found at i:105338208 original size:14 final size:14
Alignment explanation
Indices: 105338191--105338221 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
105338181 ATCCAAACAA
105338191 TAACAACAAAATAG
1 TAACAACAAAATAG
*
105338205 TAACAACATAATAG
1 TAACAACAAAATAG
105338219 TAA
1 TAA
105338222 AAAAACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:105338239 original size:22 final size:21
Alignment explanation
Indices: 105338214--105338260 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
105338204 GTAACAACAT
105338214 AATAGTAAAAAAACAATAAGAA
1 AATAGTAAAAAAACAATAA-AA
* * *
105338236 AATATTTACAAAACAATAAAA
1 AATAGTAAAAAAACAATAAAA
105338257 AATA
1 AATA
105338261 ACAAGAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.19
Consensus pattern (21 bp):
AATAGTAAAAAAACAATAAAA
Found at i:105340927 original size:40 final size:40
Alignment explanation
Indices: 105340880--105340960 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
105340870 CCTCTTGTAG
105340880 GTTAATTTTGCATTTACCACACGACCATAGCCTGTTACAC
1 GTTAATTTTGCATTTACCACACGACCATAGCCTGTTACAC
*
105340920 GTTAATTTTTCATTTACCACACGACCATAGCCTGTTACAC
1 GTTAATTTTGCATTTACCACACGACCATAGCCTGTTACAC
105340960 G
1 G
105340961 GCCCAACCAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (40 bp):
GTTAATTTTGCATTTACCACACGACCATAGCCTGTTACAC
Found at i:105345612 original size:32 final size:32
Alignment explanation
Indices: 105345570--105345675 Score: 79
Period size: 33 Copynumber: 3.2 Consensus size: 32
105345560 TTAGAAGAAG
* *
105345570 ATATACATACAAAAAATAATATAAAATCAATA
1 ATATATATACAAAAAATAATAAAAAATCAATA
* *
105345602 ATATATATACATATAAAAAAATAAAAAATTAA-A
1 ATATATATACA-A-AAAATAATAAAAAATCAATA
* * * **
105345635 GGAAATATTTACATAAAATAATAGGAAATCAATA
1 --ATATATATACAAAAAATAATAAAAAATCAATA
*
105345669 ATGTATA
1 ATATATA
105345676 CTTAGAGTAA
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
32 14 0.25
33 16 0.29
34 16 0.29
35 9 0.16
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (32 bp):
ATATATATACAAAAAATAATAAAAAATCAATA
Found at i:105348024 original size:18 final size:18
Alignment explanation
Indices: 105347993--105348036 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
105347983 GCTTAAAAAT
*
105347993 TATTTTTATTATAAT-AA
1 TATTTTTATAATAATGAA
105348010 TATTTCTTATAATAATGAA
1 TATTT-TTATAATAATGAA
105348029 TATTTTTA
1 TATTTTTA
105348037 AAAAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 12 0.50
19 7 0.29
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
TATTTTTATAATAATGAA
Found at i:105348548 original size:25 final size:25
Alignment explanation
Indices: 105348520--105348568 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
105348510 AAACAAAAAG
105348520 TATAAATTAT-TTCAAAATTATTAAT
1 TATAAATTATATTCAAAATT-TTAAT
*
105348545 TATAAATTATATTCCAAATTTTAA
1 TATAAATTATATTCAAAATTTTAA
105348569 ATACATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (25 bp):
TATAAATTATATTCAAAATTTTAAT
Found at i:105348970 original size:19 final size:18
Alignment explanation
Indices: 105348921--105348981 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
105348911 ATAAATTTGA
*
105348921 AAAAAAT-AAA-AAAATA
1 AAAAAATAAAATAAAATT
* *
105348937 AACATAAATATAATAATATTT
1 AA-A-AAATAAAATAA-AATT
105348958 AAAAAATAAAATAAAATT
1 AAAAAATAAAATAAAATT
105348976 AAAAAA
1 AAAAAA
105348982 AAGGTTTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
16 2 0.06
17 1 0.03
18 13 0.37
19 12 0.34
20 3 0.09
21 4 0.11
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAAATAAAATAAAATT
Found at i:105356609 original size:18 final size:19
Alignment explanation
Indices: 105356562--105356611 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
105356552 TCTGTTTGTT
105356562 ATATAAATAAAAATGATTAA
1 ATATAAAT-AAAATGATTAA
* *
105356582 ATAT-ATTAAAAT-TTTAA
1 ATATAAATAAAATGATTAA
105356599 ATATAAATAAAAT
1 ATATAAATAAAAT
105356612 ACATACATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 8 0.31
18 12 0.46
19 2 0.08
20 4 0.15
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATAAATAAAATGATTAA
Found at i:105358774 original size:129 final size:130
Alignment explanation
Indices: 105358631--105358892 Score: 418
Period size: 129 Copynumber: 2.0 Consensus size: 130
105358621 TATGATACAG
* * *
105358631 TTTTTTGTTTTTGCTCTGCTTTTAGCCAAAATATAGGATATGAAATGTGTGGGGGTATTTTAGAA
1 TTTTTTGTTTTTGCTCTGCTTTTAGCCAAAATATAGGACATGAAATGTGTGGAGGTAATTTAGAA
* * *
105358696 CTATTACTTACATGCTTTTTATTTAGAATAGGTAGAACACGAGTCTGATAGCATTTTGAATAGCA
66 CTACTACTTACATGCTTTTTATTTAGAACAGGTAGAACACGAATCTGATAGCATTTTGAATAGCA
* *
105358761 TTTTTT-TTTTTGCTCTGCTTTTAGCCAAAATATAGGGCATGAAATGTGTGGAGGTAATTTAGAG
1 TTTTTTGTTTTTGCTCTGCTTTTAGCCAAAATATAGGACATGAAATGTGTGGAGGTAATTTAGAA
* * *
105358825 CTACTACTTACATGTTTTTTATTTAGAACAGGTAGAACACGAATTTGATAGCATTTTGAATTGCA
66 CTACTACTTACATGCTTTTTATTTAGAACAGGTAGAACACGAATCTGATAGCATTTTGAATAGCA
105358890 TTT
1 TTT
105358893 CCTTGGAACA
Statistics
Matches: 121, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 115 0.95
130 6 0.05
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.41
Consensus pattern (130 bp):
TTTTTTGTTTTTGCTCTGCTTTTAGCCAAAATATAGGACATGAAATGTGTGGAGGTAATTTAGAA
CTACTACTTACATGCTTTTTATTTAGAACAGGTAGAACACGAATCTGATAGCATTTTGAATAGCA
Found at i:105359338 original size:15 final size:15
Alignment explanation
Indices: 105359314--105359344 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
105359304 CCTATATGAT
105359314 TACATATATGTTCAA
1 TACATATATGTTCAA
*
105359329 TACATGTATGTTCAA
1 TACATATATGTTCAA
105359344 T
1 T
105359345 TTTTTAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (15 bp):
TACATATATGTTCAA
Found at i:105362257 original size:15 final size:15
Alignment explanation
Indices: 105362237--105362269 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
105362227 GTCGCTTCTA
105362237 TTATAAATTGTCTCG
1 TTATAAATTGTCTCG
*
105362252 TTATAAATTGTCTTG
1 TTATAAATTGTCTCG
105362267 TTA
1 TTA
105362270 GATTATTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (15 bp):
TTATAAATTGTCTCG
Found at i:105366291 original size:15 final size:16
Alignment explanation
Indices: 105366273--105366310 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
105366263 TTTTTTATTT
*
105366273 AATATT-AAATATGAA
1 AATATTAAAAGATGAA
105366288 AATATTAAAAGATGAA
1 AATATTAAAAGATGAA
105366304 AGATATT
1 A-ATATT
105366311 TATATTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 9 0.45
17 5 0.25
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (16 bp):
AATATTAAAAGATGAA
Found at i:105369901 original size:24 final size:26
Alignment explanation
Indices: 105369850--105369912 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
105369840 ACATATAACC
**
105369850 TCAATTCAATCACAATTTCTCACATTT
1 TCAATTCAATCA-TTTTTCTCACATTT
105369877 TCAATTCAATCATTTTTC-CAC-TTT
1 TCAATTCAATCATTTTTCTCACATTT
105369901 TCAA-TCAA-CATT
1 TCAATTCAATCATT
105369913 CAATCCATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 4 0.12
23 4 0.12
24 7 0.21
25 3 0.09
26 4 0.12
27 12 0.35
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.43
Consensus pattern (26 bp):
TCAATTCAATCATTTTTCTCACATTT
Found at i:105369952 original size:18 final size:19
Alignment explanation
Indices: 105369929--105369967 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
105369919 ATATATTCAC
105369929 ACATTTTCA-CAATTCAAT
1 ACATTTTCATCAATTCAAT
105369947 ACATTTTCATTCAATTCAAT
1 ACATTTTCA-TCAATTCAAT
105369967 A
1 A
105369968 TCAATACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (19 bp):
ACATTTTCATCAATTCAAT
Found at i:105370303 original size:43 final size:43
Alignment explanation
Indices: 105370256--105370341 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
105370246 ATTTTTCCAT
105370256 CCCAATTCATACCTTATTTATAATT-AATTTTCAACCAAACTTA
1 CCCAATTCATACCTTATTTAT-ATTCAATTTTCAACCAAACTTA
105370299 CCCAATTCATACCTTATTTATATTCAATTTTCAACCAAACTTA
1 CCCAATTCATACCTTATTTATATTCAATTTTCAACCAAACTTA
105370342 AACTTAACTC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 3 0.07
43 39 0.93
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (43 bp):
CCCAATTCATACCTTATTTATATTCAATTTTCAACCAAACTTA
Found at i:105370732 original size:5 final size:5
Alignment explanation
Indices: 105370717--105370784 Score: 68
Period size: 5 Copynumber: 13.4 Consensus size: 5
105370707 TTTCTTTTGT
*
105370717 TATATA TATAA TAT-A -ATAA TATAA TATAA TATAA AATTAA TATAA TAATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TA-TAA TATAA T-ATAA
* *
105370768 AATAA TATAT TATAA TA
1 TATAA TATAA TATAA TA
105370785 AAAATCTTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 36 0.69
6 12 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:105370740 original size:13 final size:13
Alignment explanation
Indices: 105370722--105370785 Score: 71
Period size: 13 Copynumber: 5.1 Consensus size: 13
105370712 TTTGTTATAT
105370722 ATATAATATAATA
1 ATATAATATAATA
105370735 ATATAATATAAT-
1 ATATAATATAATA
*
105370747 ATAAAAT-TAAT-
1 ATATAATATAATA
*
105370758 ATAATAATAAAATA
1 AT-ATAATATAATA
*
105370772 ATATATTATAATA
1 ATATAATATAATA
105370785 A
1 A
105370786 AAATCTTAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
11 6 0.14
12 10 0.23
13 25 0.58
14 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:105370772 original size:37 final size:37
Alignment explanation
Indices: 105370718--105370789 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
105370708 TTCTTTTGTT
*
105370718 ATATATATAATATAATAATATAATATAATATAAAATTA
1 ATATATATAATAAAATAATATAATATAATA-AAAATTA
*
105370756 ATATA-ATAATAAAATAATATATTATAATAAAAAT
1 ATATATATAATAAAATAATATAATATAATAAAAAT
105370790 CTTAACTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 5 0.16
37 22 0.69
38 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (37 bp):
ATATATATAATAAAATAATATAATATAATAAAAATTA
Found at i:105375208 original size:43 final size:43
Alignment explanation
Indices: 105375161--105375309 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
105375151 GTTATCGAGT
* * *
105375161 TGTGATTACATGTAAGACCATGTTTGGGACATTGCCATTG-TA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGATA
* * *
105375203 TTGTGATTACGTGTAAGACCATATCTAGGACATTGACATCGGATA
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGACATC-GATA
* * * * *
105375248 T-TGATT-CGTGTAAGACCCTGTCTGAGACAGTGGCATCGATA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGATA
*
105375289 TGTGATAACATGTAAGACCAT
1 TGTGATTACATGTAAGACCAT
105375310 ATCTAGGATA
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 5 0.06
42 29 0.33
43 49 0.56
44 2 0.02
45 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGATA
Found at i:105375324 original size:42 final size:43
Alignment explanation
Indices: 105375204--105375325 Score: 126
Period size: 42 Copynumber: 2.9 Consensus size: 43
105375194 GCCATTGTAT
* *
105375204 TGTGATTACGTGTAAGACCATATCTAGGACATTGACATCGGATA
1 TGTGA-TACGTGTAAGACCATATCTAGGACAGTGGCATCGGATA
* * *
105375248 T-TGATTCGTGTAAGACCCTGTCT-GAGACAGTGGCATC-GATA
1 TGTGATACGTGTAAGACCATATCTAG-GACAGTGGCATCGGATA
* *
105375289 TGTGATAACATGTAAGACCATATCTAGGATA-TGGCAT
1 TGTGAT-ACGTGTAAGACCATATCTAGGACAGTGGCAT
105375326 TTTATGAGCT
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
41 6 0.09
42 36 0.56
43 20 0.31
44 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTGATACGTGTAAGACCATATCTAGGACAGTGGCATCGGATA
Found at i:105378645 original size:18 final size:19
Alignment explanation
Indices: 105378622--105378660 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
105378612 ATATATTCAC
105378622 ACATTTTCA-CAATTCAAT
1 ACATTTTCATCAATTCAAT
105378640 ACATTTTCATTCAATTCAAT
1 ACATTTTCA-TCAATTCAAT
105378660 A
1 A
105378661 TCAATACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (19 bp):
ACATTTTCATCAATTCAAT
Found at i:105379389 original size:5 final size:5
Alignment explanation
Indices: 105379373--105379449 Score: 68
Period size: 5 Copynumber: 15.0 Consensus size: 5
105379363 TTCTTTTGTT
* *
105379373 ATATA TATATA ATATA ACATA ATAT- -TATA ATAATA ATATA ATATA ATGTA
1 ATATA -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA
* *
105379423 ACATTA ATATA ATAATA AAATA ATATA
1 ATA-TA ATATA AT-ATA ATATA ATATA
105379450 TTTAAAAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
3 3 0.05
5 37 0.64
6 18 0.31
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:105379405 original size:11 final size:11
Alignment explanation
Indices: 105379381--105379447 Score: 64
Period size: 11 Copynumber: 6.0 Consensus size: 11
105379371 TTATATATAT
105379381 ATAATATAACATA
1 ATAATAT-A-ATA
*
105379394 ATATTATAATA
1 ATAATATAATA
105379405 ATAATATAAT-
1 ATAATATAATA
* *
105379415 ATAATGTAACA
1 ATAATATAATA
*
105379426 TTAATATAATA
1 ATAATATAATA
*
105379437 ATAAAATAATA
1 ATAATATAATA
105379448 TATTTAAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
10 8 0.18
11 29 0.66
12 1 0.02
13 6 0.14
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (11 bp):
ATAATATAATA
Found at i:105379412 original size:29 final size:29
Alignment explanation
Indices: 105379379--105379444 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
105379369 TGTTATATAT
*
105379379 ATATAATATAACATAATATT-ATAATAATA
1 ATATAATATAACATAACATTAAT-ATAATA
**
105379408 ATATAATATAATGTAACATTAATATAATA
1 ATATAATATAACATAACATTAATATAATA
*
105379437 ATAAAATA
1 ATATAATA
105379445 ATATATTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 30 0.94
30 2 0.06
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (29 bp):
ATATAATATAACATAACATTAATATAATA
Found at i:105379417 original size:16 final size:16
Alignment explanation
Indices: 105379379--105379449 Score: 69
Period size: 16 Copynumber: 4.6 Consensus size: 16
105379369 TGTTATATAT
*
105379379 ATATAATATAA-CATA
1 ATATAATATAATAATA
105379394 ATAT--TATAATAATA
1 ATATAATATAATAATA
*
105379408 ATATAATATAAT-GTA
1 ATATAATATAATAATA
*
105379423 ACATTAATATAATAATA
1 ATA-TAATATAATAATA
*
105379440 AAATAATATA
1 ATATAATATA
105379450 TTTAAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.11
14 7 0.15
15 8 0.17
16 22 0.48
17 4 0.09
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (16 bp):
ATATAATATAATAATA
Found at i:105386791 original size:22 final size:22
Alignment explanation
Indices: 105386766--105386822 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
105386756 TTCTAAGCGG
105386766 TATCGATACCATTTATGAGAAT
1 TATCGATACCATTTATGAGAAT
* **
105386788 TATCAATACCAACTATGAGAAT
1 TATCGATACCATTTATGAGAAT
*
105386810 TATCGATATCATT
1 TATCGATACCATT
105386823 GAATGAGTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.35
Consensus pattern (22 bp):
TATCGATACCATTTATGAGAAT
Found at i:105390764 original size:26 final size:26
Alignment explanation
Indices: 105390728--105390782 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
105390718 TCGTCAGAAG
105390728 ATAGACTATATTTTAAAAATAATTCT
1 ATAGACTATATTTTAAAAATAATTCT
105390754 ATAGACTATATTTTAAAAATAATTCT
1 ATAGACTATATTTTAAAAATAATTCT
105390780 ATA
1 ATA
105390783 ACAAATACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (26 bp):
ATAGACTATATTTTAAAAATAATTCT
Found at i:105392051 original size:25 final size:26
Alignment explanation
Indices: 105391982--105392053 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
105391972 TTTGACAATA
*
105391982 CTTTTGAAAAGTGCTTTTAAGAAGTG
1 CTTTTGAAAAGTGCTTTTGAGAAGTG
*
105392008 C-TGTGAAAAAAGTGCTTTTGAG-AGTG
1 CTTTTG--AAAAGTGCTTTTGAGAAGTG
*
105392034 CTTTTGAGAAGTGCTTTTGA
1 CTTTTGAAAAGTGCTTTTGA
105392054 AAAATTTAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 16 0.41
26 6 0.15
27 17 0.44
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (26 bp):
CTTTTGAAAAGTGCTTTTGAGAAGTG
Found at i:105392052 original size:13 final size:13
Alignment explanation
Indices: 105391982--105392053 Score: 76
Period size: 13 Copynumber: 5.5 Consensus size: 13
105391972 TTTGACAATA
*
105391982 CTTTTGAAAAGTG
1 CTTTTGAGAAGTG
*
105391995 CTTTTAAGAAGTG
1 CTTTTGAGAAGTG
* *
105392008 C-TGTGAAAAAAGTG
1 CTTTTG--AGAAGTG
105392022 CTTTTGAG-AGTG
1 CTTTTGAGAAGTG
105392034 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
105392047 CTTTTGA
1 CTTTTGA
105392054 AAAATTTAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
12 14 0.29
13 24 0.50
14 7 0.15
15 3 0.06
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (13 bp):
CTTTTGAGAAGTG
Found at i:105394190 original size:72 final size:72
Alignment explanation
Indices: 105394068--105394306 Score: 365
Period size: 72 Copynumber: 3.3 Consensus size: 72
105394058 AAAATCATAT
**
105394068 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
105394131 GACCAAAC
65 AACCAAAC
* * *
105394139 ATAAACAACTATTAATAAAAGTAGATTACACATAAATAAGTAGTACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
105394204 ACCAAAC
66 ACCAAAC
* * *
105394211 AAAAACAGCCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
105394276 ACCAAAC
66 ACCAAAC
*
105394283 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
105394307 TTTAGCATTT
Statistics
Matches: 150, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
71 24 0.16
72 126 0.84
ACGTcount: A:0.55, C:0.15, G:0.07, T:0.23
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:105402789 original size:5 final size:5
Alignment explanation
Indices: 105402779--105402815 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
105402769 ACTTGTGAAA
105402779 AAAAT AAAAT AAAAT AAAAT AAAGA- AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
105402816 CACACAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.03
5 28 0.93
6 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:105403268 original size:22 final size:22
Alignment explanation
Indices: 105403243--105403291 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
105403233 TAAAAATCAC
*
105403243 AATTTCATATAATGACAACTTA
1 AATTTCAAATAATGACAACTTA
*
105403265 AA-TTCAAATATTGACAACTTA
1 AATTTCAAATAATGACAACTTA
105403286 AATTTC
1 AATTTC
105403292 TTAAAAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.37
Consensus pattern (22 bp):
AATTTCAAATAATGACAACTTA
Found at i:105404147 original size:35 final size:35
Alignment explanation
Indices: 105404089--105404183 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 35
105404079 ATAAATTTAG
* **
105404089 TATAAATACAATTTAATTTATATTTT-ATTATTTGAT
1 TATAAATATAATTTAA-AAATATTTTGA-TATTTGAT
* *
105404125 T-TAAATATAATTTGTAAAATATTTTGATATTTTAT
1 TATAAATATAATTT-AAAAATATTTTGATATTTGAT
*
105404160 TATGAATATAATTTAAAAATATTT
1 TATAAATATAATTTAAAAATATTT
105404184 AAATTTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
35 35 0.71
36 14 0.29
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (35 bp):
TATAAATATAATTTAAAAATATTTTGATATTTGAT
Found at i:105404430 original size:21 final size:21
Alignment explanation
Indices: 105404378--105404432 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
105404368 ATCATTATTT
* *
105404378 CTAATCTCACCGCTATAGTAT
1 CTAATCTCACTGCTATAGTAA
*
105404399 CCAATCTCACTGCTATAGTAA
1 CTAATCTCACTGCTATAGTAA
105404420 CTAATCTCACTGC
1 CTAATCTCACTGC
105404433 CACCGCTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (21 bp):
CTAATCTCACTGCTATAGTAA
Found at i:105405118 original size:21 final size:21
Alignment explanation
Indices: 105405094--105405146 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
105405084 CGCTGTTTCT
*
105405094 AATCTCACCGCTACAGT-ATCC
1 AATCTCACCGCTACAATGA-CC
*
105405115 AATCTCACCGCTACAATGACT
1 AATCTCACCGCTACAATGACC
105405136 AATCTCACCGC
1 AATCTCACCGC
105405147 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATGACC
Found at i:105405213 original size:44 final size:44
Alignment explanation
Indices: 105405158--105405246 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
105405148 ACCGCTGTTT
*
105405158 TTAACCTCACCGGAGGTAAACACACCGCCCATCCAAACTAAGCC
1 TTAACCTCACCGGAGGTAAACACACCACCCATCCAAACTAAGCC
* * * *
105405202 TTAATCTCACCGGATGTAAACATACCACGCATCCAAACTAAGCC
1 TTAACCTCACCGGAGGTAAACACACCACCCATCCAAACTAAGCC
105405246 T
1 T
105405247 AAGGCCAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.18
Consensus pattern (44 bp):
TTAACCTCACCGGAGGTAAACACACCACCCATCCAAACTAAGCC
Found at i:105405469 original size:17 final size:18
Alignment explanation
Indices: 105405449--105405522 Score: 62
Period size: 18 Copynumber: 4.1 Consensus size: 18
105405439 TTTTAATAAC
105405449 ATTTAAATTTAT-AATTT
1 ATTTAAATTTATAAATTT
* *
105405466 ATTTTATTTTATAAATTT
1 ATTTAAATTTATAAATTT
* *
105405484 GTTTAAATATTTTAAA-TT
1 ATTTAAAT-TTATAAATTT
*
105405502 ATTAACTAATTTATAAATTT
1 ATTTA--AATTTATAAATTT
105405522 A
1 A
105405523 GCTATTCATT
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
17 10 0.23
18 15 0.35
19 12 0.28
20 6 0.14
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (18 bp):
ATTTAAATTTATAAATTT
Found at i:105406281 original size:20 final size:21
Alignment explanation
Indices: 105406256--105406306 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
105406246 ATTAATTATT
105406256 TATAAAATT-TAATTTAAATA
1 TATAAAATTATAATTTAAATA
*
105406276 TAT-AAATTATATTTTAAATA
1 TATAAAATTATAATTTAAATA
105406296 T-TAAAA-TATAA
1 TATAAAATTATAA
105406307 CCGTTACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TATAAAATTATAATTTAAATA
Found at i:105407783 original size:22 final size:22
Alignment explanation
Indices: 105407735--105407784 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
105407725 ATATCCAAAC
* *
105407735 AATAACAACAAAATTGTAGTAA
1 AATAATAACAAAATTGTAGCAA
*
105407757 TATAATAACAAAA-TGATAGCAA
1 AATAATAACAAAATTG-TAGCAA
105407779 AATAAT
1 AATAAT
105407785 GACAGTAGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (22 bp):
AATAATAACAAAATTGTAGCAA
Found at i:105414729 original size:23 final size:22
Alignment explanation
Indices: 105414635--105414742 Score: 96
Period size: 21 Copynumber: 5.0 Consensus size: 22
105414625 CCTTATCAGT
* *
105414635 ATACGACACATAAAGTGCCT-A
1 ATACGACACATGAGGTGCCTGA
* * *
105414656 AAACGACACACGAGGTGTCTG-
1 ATACGACACATGAGGTGCCTGA
* *
105414677 ATACGACACACGAGGTGCTTG-
1 ATACGACACATGAGGTGCCTGA
105414698 ATACGACACATGAGGTGCCTGAA
1 ATACGACACATGAGGTGCCTG-A
* * *
105414721 ATACAACACATAAAGTGCCTGA
1 ATACGACACATGAGGTGCCTGA
105414743 TCGATAAAGC
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
21 52 0.73
22 1 0.01
23 18 0.25
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (22 bp):
ATACGACACATGAGGTGCCTGA
Found at i:105415135 original size:15 final size:15
Alignment explanation
Indices: 105415110--105415167 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
105415100 TCATGTATAT
105415110 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
105415126 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
105415141 AATAATTTCAATCAA
1 TATAAATTCAATCAA
105415156 TATAAATTCAAT
1 TATAAATTCAAT
105415168 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:105416447 original size:5 final size:5
Alignment explanation
Indices: 105416439--105416470 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
105416429 TTTAGTTTAT
105416439 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
105416471 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:105418933 original size:18 final size:18
Alignment explanation
Indices: 105418910--105418970 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
105418900 AAATTATGAT
105418910 AATTATACATTTAAAAAC
1 AATTATACATTTAAAAAC
105418928 AATTATA-ATTTAATAGAAC
1 AATTATACATTTAA-A-AAC
* **
105418947 TTATTACCCATTTAAAAAC
1 -AATTATACATTTAAAAAC
105418966 AATTA
1 AATTA
105418971 GAATTAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 6 0.17
18 12 0.34
19 6 0.17
20 5 0.14
21 6 0.17
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (18 bp):
AATTATACATTTAAAAAC
Found at i:105419302 original size:24 final size:21
Alignment explanation
Indices: 105419265--105419328 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 21
105419255 AATAGGTTAA
*
105419265 AAATGTTTTAATTATTATTATTT
1 AAAT-TTTTAATTA-TAATATTT
105419288 GAAATTTTTATATTATAATATTT
1 -AAATTTTTA-ATTATAATATTT
* *
105419311 AAATTGTTAAGT-TAATAT
1 AAATTTTTAATTATAATAT
105419329 ATGTTAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 6 0.17
21 2 0.06
22 8 0.22
23 12 0.33
24 8 0.22
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (21 bp):
AAATTTTTAATTATAATATTT
Found at i:105423873 original size:51 final size:51
Alignment explanation
Indices: 105423797--105423908 Score: 154
Period size: 51 Copynumber: 2.2 Consensus size: 51
105423787 TACTTCATAC
* *
105423797 TTCATCCGGAATTATTATCTTGTTGCTCTAACTTCAATAAGAGCTTAATAT
1 TTCATCCGGAATAATTATCTTGTTGCTCTAACTTCAACAAGAGCTTAATAT
* * *
105423848 TTCATCCGGAATAATTA-CTTTGTTGCTCTAGCTTTAACAAGAGCTTCATAT
1 TTCATCCGGAATAATTATC-TTGTTGCTCTAACTTCAACAAGAGCTTAATAT
*
105423899 TTTATCCGGA
1 TTCATCCGGA
105423909 TAACTTAGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.02
51 53 0.98
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (51 bp):
TTCATCCGGAATAATTATCTTGTTGCTCTAACTTCAACAAGAGCTTAATAT
Found at i:105425589 original size:29 final size:29
Alignment explanation
Indices: 105425547--105425606 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
105425537 GCTTGGCCCA
105425547 TAATTATTATTTATTAAAATTTCTAAACT
1 TAATTATTATTTATTAAAATTTCTAAACT
105425576 TAATTATTATTTATTAAAATTTCTAAACT
1 TAATTATTATTTATTAAAATTTCTAAACT
105425605 TA
1 TA
105425607 CTCATTGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.52
Consensus pattern (29 bp):
TAATTATTATTTATTAAAATTTCTAAACT
Found at i:105428007 original size:15 final size:15
Alignment explanation
Indices: 105427977--105428005 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
105427967 ACTAATAGTA
105427977 ATTTTTTATATATTT
1 ATTTTTTATATATTT
105427992 ATTTTTTA-ATATTT
1 ATTTTTTATATATTT
105428006 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
ATTTTTTATATATTT
Found at i:105432237 original size:88 final size:88
Alignment explanation
Indices: 105432088--105432476 Score: 448
Period size: 88 Copynumber: 4.5 Consensus size: 88
105432078 GTGGCCTGTC
* * * *
105432088 ATTTTTAGCCTGTTTCCTTACTACTTAAGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTAC
1 ATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTAC
* *
105432153 TGTTTAGAGAGATAAGATCTGTA
66 TATTTAGAGAGATAAGATCTATA
105432176 ATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTAC
1 ATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTAC
* * *
105432241 TATTTAGGGAGATAAGTTTTATA
66 TATTTAGAGAGATAAGATCTATA
* * * * *
105432264 ATTTCCT-GCTTGTTACCCTACTGCTTAGGGGGTTAAGGCTCGCTGTCTTTGATCTGCTCCACTA
1 ATTT-TTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTA
* *
105432328 CTATTTAAAGAGATAAGATCTATT
65 CTATTTAGAGAGATAAGATCTATA
** * ** **
105432352 ATTTCCATCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTGCTCCACTAC
1 ATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTAC
* * *
105432417 TGTTTAG-G-G--GAGATCT-TT
66 TATTTAGAGAGATAAGATCTATA
* * * *
105432435 ATTTTCCAACCTATTACCCTACCGCTTAGGGGGTTAAGGCTC
1 ATTTT-TAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTC
105432477 CACTACTGTA
Statistics
Matches: 265, Mismatches: 33, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
83 6 0.02
84 38 0.14
86 1 0.00
87 2 0.01
88 217 0.82
89 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (88 bp):
ATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTAC
TATTTAGAGAGATAAGATCTATA
Found at i:105432329 original size:44 final size:43
Alignment explanation
Indices: 105432281--105432426 Score: 98
Period size: 44 Copynumber: 3.3 Consensus size: 43
105432271 GCTTGTTACC
105432281 CTACTGCTTAGGGGGTTAAGGCTCGCTGTCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGGTTAAGGCTCGCT-TCTTTGATCTGCTCCA
** ** * * * ** * * *
105432325 CTACTATTTAAAGAGATAA-GATCTATTATTTCCATCCTGTTACC-
1 CTACTGCTTAGGGGGTTAAGGCTCGCTTCTTT-GAT-CTGCT-CCA
* *
105432369 CTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGGTTAAGGCTCGCT-TCTTTGATCTGCTCCA
*
105432413 CTACTGTTTAGGGG
1 CTACTGCTTAGGGG
105432427 AGATCTTTAT
Statistics
Matches: 69, Mismatches: 27, Indels: 12
0.64 0.25 0.11
Matches are distributed among these distances:
42 4 0.06
43 8 0.12
44 47 0.68
45 7 0.10
46 3 0.04
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (43 bp):
CTACTGCTTAGGGGGTTAAGGCTCGCTTCTTTGATCTGCTCCA
Found at i:105438932 original size:25 final size:24
Alignment explanation
Indices: 105438884--105438932 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
105438874 GGCTTTAGGG
*
105438884 TTATTTAGGGCTTGGATTTAAGTT
1 TTATTTAGGGCTTAGATTTAAGTT
* *
105438908 TTATTTTGGGCTTTAGATTTGAGTT
1 TTATTTAGGGC-TTAGATTTAAGTT
105438933 AAAAATAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.53
Consensus pattern (24 bp):
TTATTTAGGGCTTAGATTTAAGTT
Found at i:105439073 original size:13 final size:13
Alignment explanation
Indices: 105439055--105439092 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
105439045 CATTATAATC
105439055 TATAAAA-AATTAT
1 TATAAAATAA-TAT
105439068 TATAAAATAATAT
1 TATAAAATAATAT
*
105439081 TATAAACTAATA
1 TATAAAATAATA
105439093 AAATATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 21 0.91
14 2 0.09
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (13 bp):
TATAAAATAATAT
Found at i:105440023 original size:38 final size:38
Alignment explanation
Indices: 105439979--105440055 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
105439969 TACATAGCAA
105439979 TCCATGTAGATGATTATGTTGACATGACATTATTTTGT
1 TCCATGTAGATGATTATGTTGACATGACATTATTTTGT
105440017 TCCATGTAGATGATTATGTTGACATGACATTATTTTGT
1 TCCATGTAGATGATTATGTTGACATGACATTATTTTGT
105440055 T
1 T
105440056 ATATGTTATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.45
Consensus pattern (38 bp):
TCCATGTAGATGATTATGTTGACATGACATTATTTTGT
Found at i:105440036 original size:19 final size:19
Alignment explanation
Indices: 105439979--105440036 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
105439969 TACATAGCAA
105439979 TCCATGTAGATGATTATGT
1 TCCATGTAGATGATTATGT
* * * *
105439998 TGACATG-ACATTATTTTGT
1 T-CCATGTAGATGATTATGT
105440017 TCCATGTAGATGATTATGT
1 TCCATGTAGATGATTATGT
105440036 T
1 T
105440037 GACATGACAT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
18 4 0.14
19 21 0.72
20 4 0.14
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (19 bp):
TCCATGTAGATGATTATGT
Found at i:105440055 original size:19 final size:19
Alignment explanation
Indices: 105439995--105440055 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
105439985 TAGATGATTA
105439995 TGTTGACATGACATTATTT
1 TGTTGACATGACATTATTT
* * * *
105440014 TGTT-CCATGTAGATGATTA
1 TGTTGACATG-ACATTATTT
105440033 TGTTGACATGACATTATTT
1 TGTTGACATGACATTATTT
105440052 TGTT
1 TGTT
105440056 ATATGTTATG
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
18 4 0.12
19 24 0.75
20 4 0.12
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.48
Consensus pattern (19 bp):
TGTTGACATGACATTATTT
Found at i:105440146 original size:7 final size:7
Alignment explanation
Indices: 105440134--105440163 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
105440124 AATTATAATT
105440134 AATTTAA
1 AATTTAA
105440141 AATTTAA
1 AATTTAA
105440148 AATTTAA
1 AATTTAA
105440155 AATATTAA
1 AAT-TTAA
105440163 A
1 A
105440164 GATAATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AATTTAA
Found at i:105440154 original size:19 final size:19
Alignment explanation
Indices: 105440074--105440154 Score: 60
Period size: 19 Copynumber: 4.2 Consensus size: 19
105440064 TGTTAGTAAA
*
105440074 TAATTTAAAATTAAAAAATT
1 TAATTTAAAATT-TAAAATT
*
105440094 ATAA--TAATAATTTAAAAAAT
1 -TAATTTAA-AATTT-AAAATT
* *
105440114 TAATTCTAAAAATTATAA-T
1 TAATT-TAAAATTTAAAATT
105440133 TAATTTAAAATTTAAAATT
1 TAATTTAAAATTTAAAATT
105440152 TAA
1 TAA
105440155 AATATTAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
18 10 0.21
19 16 0.33
20 12 0.25
21 7 0.15
22 3 0.06
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (19 bp):
TAATTTAAAATTTAAAATT
Found at i:105442285 original size:17 final size:18
Alignment explanation
Indices: 105442241--105442287 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
105442231 TTTGAAATAA
105442241 AATAAAAATTATACATTT
1 AATAAAAATTATACATTT
105442259 AA-AAATAATTATA-ATTT
1 AATAAA-AATTATACATTT
*
105442276 AATAGAAATTAT
1 AATAAAAATTAT
105442288 GATAGTTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
AATAAAAATTATACATTT
Found at i:105442637 original size:23 final size:25
Alignment explanation
Indices: 105442592--105442646 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
105442582 GAATAGGTTA
*
105442592 AAAATGTTTTAATTAATATTATTTG
1 AAAATGTTTTAATTAATAATATTTG
*
105442617 AAAAT-TTTTTATT-ATAATATTT-
1 AAAATGTTTTAATTAATAATATTTG
*
105442639 AAATTGTT
1 AAAATGTT
105442647 AAGTTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 4 0.15
23 10 0.38
24 7 0.27
25 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (25 bp):
AAAATGTTTTAATTAATAATATTTG
Done.