Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 316 of 349
Found at i:105442748 original size:17 final size:14
Alignment explanation
Indices: 105442714--105442741 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
105442704 AATTATTGCC
105442714 ATTAAAAAAATAAT
1 ATTAAAAAAATAAT
105442728 ATTAAAAAAATAAT
1 ATTAAAAAAATAAT
105442742 TAAATTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
ATTAAAAAAATAAT
Found at i:105445262 original size:42 final size:42
Alignment explanation
Indices: 105445216--105445337 Score: 118
Period size: 42 Copynumber: 2.9 Consensus size: 42
105445206 ATATTTTAAA
* *
105445216 AAAATAAAATATCAAAATGGGTTGTTGAAATAATTATGTACC
1 AAAATAAAACATCAAAATGGGTGGTTGAAATAATTATGTACC
*** ** *
105445258 AAAATGGTACATTTAGATGGGTGGTTGAAATAATTATGTACC
1 AAAATAAAACATCAAAATGGGTGGTTGAAATAATTATGTACC
*** ** *
105445300 AAAATGGTACATTTAGATGGGTGGTTGAAATAATTATG
1 AAAATAAAACATCAAAATGGGTGGTTGAAATAATTATG
105445338 GCCTATATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33
Consensus pattern (42 bp):
AAAATAAAACATCAAAATGGGTGGTTGAAATAATTATGTACC
Found at i:105448263 original size:62 final size:62
Alignment explanation
Indices: 105448186--105448324 Score: 251
Period size: 62 Copynumber: 2.2 Consensus size: 62
105448176 TAAAACTTGT
* * *
105448186 AACTTTGTAATATAAATTTTGTTATATACATTAAATACATTACAACATTAAAAATTGGAATA
1 AACTTTGTAATATAAATTTTGTTATATAAATTAAAAACATTACAACATTAAAAATTGGAACA
105448248 AACTTTGTAATATAAATTTTGTTATATAAATTAAAAACATTACAACATTAAAAATTGGAACA
1 AACTTTGTAATATAAATTTTGTTATATAAATTAAAAACATTACAACATTAAAAATTGGAACA
105448310 AACTTTGTAATATAA
1 AACTTTGTAATATAA
105448325 TTTAGGTACA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 74 1.00
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.37
Consensus pattern (62 bp):
AACTTTGTAATATAAATTTTGTTATATAAATTAAAAACATTACAACATTAAAAATTGGAACA
Found at i:105448268 original size:14 final size:14
Alignment explanation
Indices: 105448245--105448279 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
105448235 AAAAATTGGA
*
105448245 ATAAACTTTGTAAT
1 ATAAATTTTGTAAT
*
105448259 ATAAATTTTGTTAT
1 ATAAATTTTGTAAT
105448273 ATAAATT
1 ATAAATT
105448280 AAAAACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (14 bp):
ATAAATTTTGTAAT
Found at i:105455758 original size:62 final size:62
Alignment explanation
Indices: 105455679--105455831 Score: 218
Period size: 62 Copynumber: 2.5 Consensus size: 62
105455669 CCCGTGTAGC
* * *
105455679 TCACACGGCCTGGGCACATGCCTATGTCCATGCTCTTGTGGTCCTAAATCATAAACTA-TGAG
1 TCACACGGCCTGGGCACATGCCCATGTCCATGCTCGTGTAGTCCTAAATCATAAAC-AGTGAG
* *
105455741 TTACACGGCCTAGGCACATGCCCATGTCCATGCTCGTGTAGTCCTAAATCATAAACAGTGAG
1 TCACACGGCCTGGGCACATGCCCATGTCCATGCTCGTGTAGTCCTAAATCATAAACAGTGAG
* * *
105455803 TCACGCGGCCTGGGGACACGCCCATGTCC
1 TCACACGGCCTGGGCACATGCCCATGTCC
105455832 TTACCCGTGT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 1 0.01
62 79 0.99
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (62 bp):
TCACACGGCCTGGGCACATGCCCATGTCCATGCTCGTGTAGTCCTAAATCATAAACAGTGAG
Found at i:105457025 original size:10 final size:10
Alignment explanation
Indices: 105457012--105457115 Score: 55
Period size: 10 Copynumber: 10.9 Consensus size: 10
105457002 ATTGATATAA
105457012 ATATATAAAT
1 ATATATAAAT
*
105457022 ATATTTTAAAT
1 ATA-TATAAAT
*
105457033 AT-TATAAAA
1 ATATATAAAT
* *
105457042 ATATAAAAAA
1 ATATATAAAT
105457052 AT-TAATAAAT
1 ATAT-ATAAAT
*
105457062 -TATATAAAA
1 ATATATAAAT
105457071 ATATA-AAAT
1 ATATATAAAT
105457080 -TA-ATAAA-
1 ATATATAAAT
*
105457087 ACATATTAAA-
1 ATATA-TAAAT
105457097 ATATATAACAT
1 ATATATAA-AT
105457108 -TATATAAA
1 ATATATAAA
105457116 AATTTATTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 23
0.69 0.09 0.22
Matches are distributed among these distances:
7 1 0.01
8 6 0.08
9 22 0.30
10 36 0.49
11 8 0.11
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
ATATATAAAT
Found at i:105457068 original size:29 final size:28
Alignment explanation
Indices: 105456991--105457078 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
105456981 ATTAATATTT
* *
105456991 AAAAAATGA-AAATTGATATAAATATATA
1 AAAAAATTATAAATT-ATATAAAAATATA
* * *
105457019 AATATATTTTAAA-TATTATAAAAATATA
1 AAAAAATTATAAATTA-TATAAAAATATA
105457047 AAAAAATTAATAAATTATATAAAAATATA
1 AAAAAATT-ATAAATTATATAAAAATATA
105457076 AAA
1 AAA
105457079 TTAATAAAAC
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
27 1 0.02
28 23 0.48
29 22 0.46
30 2 0.04
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAAAATTATAAATTATATAAAAATATA
Found at i:105457104 original size:19 final size:17
Alignment explanation
Indices: 105456975--105457184 Score: 70
Period size: 19 Copynumber: 11.3 Consensus size: 17
105456965 GAAATTATCA
* *
105456975 AAAAATAT-TAATATTT
1 AAAAATATAAAATATAT
105456991 AAAAA-ATGAAAATTGATAT
1 AAAAATAT-AAAA-T-ATAT
* *
105457010 AAATATATAAATATATTTT
1 AAAAATATAAA-ATA-TAT
* *
105457029 AAATATTATAAAAATATAA
1 AAA-AATAT-AAAATATAT
*
105457048 AAAAATTAATAAATTATAT
1 AAAAA-T-ATAAAATATAT
105457067 AAAAATATAAAAT-TAAT
1 AAAAATATAAAATAT-AT
105457084 AAAACATATTAAAATATAT
1 AAAA-ATA-TAAAATATAT
* *
105457103 AACATTATATAAAAATTTATT
1 AA-A-AATAT-AAAATATA-T
105457124 AAAATTATATAAAA-ATCAT
1 AAAA--ATATAAAATAT-AT
*
105457143 AAAAATTATTAAATTGATAT
1 AAAAA-TA-TAAAAT-ATAT
**
105457163 AAACTTATAAAA-ATTAT
1 AAAAATATAAAATA-TAT
105457180 AAAAA
1 AAAAA
105457185 AAATCATAAA
Statistics
Matches: 145, Mismatches: 22, Indels: 53
0.66 0.10 0.24
Matches are distributed among these distances:
15 2 0.01
16 7 0.05
17 21 0.14
18 13 0.09
19 56 0.39
20 34 0.23
21 12 0.08
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.35
Consensus pattern (17 bp):
AAAAATATAAAATATAT
Found at i:105457127 original size:10 final size:11
Alignment explanation
Indices: 105457058--105457151 Score: 59
Period size: 10 Copynumber: 9.6 Consensus size: 11
105457048 AAAAATTAAT
105457058 AAATTATA-TA
1 AAATTATATTA
105457068 AAA--ATA-TA
1 AAATTATATTA
105457076 AAATTA-A-TA
1 AAATTATATTA
*
105457085 AAA-CATATTA
1 AAATTATATTA
105457095 AAA-TATA-TA
1 AAATTATATTA
* *
105457104 ACATTATATAA
1 AAATTATATTA
105457115 AAATT-TATTA
1 AAATTATATTA
*
105457125 AAATTATATAA
1 AAATTATATTA
*
105457136 AAATCATA--A
1 AAATTATATTA
105457145 AAATTAT
1 AAATTAT
105457152 TAAATTGATA
Statistics
Matches: 68, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
8 9 0.13
9 18 0.26
10 25 0.37
11 16 0.24
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (11 bp):
AAATTATATTA
Found at i:105457132 original size:21 final size:21
Alignment explanation
Indices: 105457089--105457155 Score: 68
Period size: 20 Copynumber: 3.3 Consensus size: 21
105457079 TTAATAAAAC
* * *
105457089 ATATTAAAATATA-TAACATT
1 ATATAAAAATTTATTAAAATT
105457109 ATATAAAAATTTATTAAAATT
1 ATATAAAAATTTATTAAAATT
* *
105457130 ATATAAAAA-TCATAAAAATT
1 ATATAAAAATTTATTAAAATT
105457150 AT-TAAA
1 ATATAAA
105457156 TTGATATAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
19 4 0.10
20 22 0.54
21 15 0.37
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (21 bp):
ATATAAAAATTTATTAAAATT
Found at i:105457176 original size:20 final size:20
Alignment explanation
Indices: 105457028--105457177 Score: 63
Period size: 20 Copynumber: 7.8 Consensus size: 20
105457018 AAATATATTT
105457028 TAAATATTATAAAAA-T-ATAA
1 TAAA-ATTATAAAAATTCAT-A
* *
105457048 AAAAATTA-ATAAATT-ATA
1 TAAAATTATAAAAATTCATA
*
105457066 TAAAAATAT-AAAATT-A-A
1 TAAAATTATAAAAATTCATA
* *
105457083 TAAAACATATTAAAA-T-ATA
1 TAAAA-TTATAAAAATTCATA
* *
105457102 TAACATTATATAAAAATTTAT-
1 TAA-AAT-TATAAAAATTCATA
*
105457123 TAAAATTATATAAAAATCATA
1 TAAAATTATA-AAAATTCATA
* *
105457144 -AAAATTAT-TAAATTGATA
1 TAAAATTATAAAAATTCATA
*
105457162 TAAACTTATAAAAATT
1 TAAAATTATAAAAATT
105457178 ATAAAAAAAA
Statistics
Matches: 101, Mismatches: 16, Indels: 26
0.71 0.11 0.18
Matches are distributed among these distances:
17 6 0.06
18 30 0.30
19 26 0.26
20 33 0.33
21 4 0.04
22 2 0.02
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (20 bp):
TAAAATTATAAAAATTCATA
Found at i:105457181 original size:9 final size:9
Alignment explanation
Indices: 105456937--105457184 Score: 107
Period size: 9 Copynumber: 26.6 Consensus size: 9
105456927 GAAATAATTG
*
105456937 AAAAATCAT
1 AAAAATTAT
105456946 AAAAATTAT
1 AAAAATTAT
* *
105456955 TAAAA-TAG
1 AAAAATTAT
105456963 AAGAAATTAT
1 AA-AAATTAT
*
105456973 CAAAAAATAT
1 -AAAAATTAT
* *
105456983 TAATATT-T
1 AAAAATTAT
105456991 AAAAA--AT
1 AAAAATTAT
*
105456998 GAAAATTGAT
1 AAAAATT-AT
*
105457008 ATAAATATAT
1 AAAAAT-TAT
*
105457018 AAATATATTTT
1 AAA-A-ATTAT
*
105457029 AAATATTAT
1 AAAAATTAT
*
105457038 AAAAATATAA
1 AAAAAT-TAT
105457048 AAAAATTA-
1 AAAAATTAT
*
105457056 ATAAATTAT
1 AAAAATTAT
*
105457065 ATAAAAATAT
1 A-AAAATTAT
105457075 -AAAATTAAT
1 AAAAATT-AT
105457084 AAAACA-TAT
1 AAAA-ATTAT
*
105457093 TAAAATATAT
1 AAAAAT-TAT
* *
105457103 AACATTATAT
1 AAAAAT-TAT
105457113 AAAAATTTATT
1 AAAAA-TTA-T
*
105457124 AAAATTATAT
1 AAAAAT-TAT
*
105457134 AAAAATCAT
1 AAAAATTAT
105457143 AAAAATTAT
1 AAAAATTAT
*
105457152 -TAAATTGAT
1 AAAAATT-AT
*
105457161 ATAAACTTAT
1 A-AAAATTAT
105457171 AAAAATTAT
1 AAAAATTAT
105457180 AAAAA
1 AAAAA
105457185 AAATCATAAA
Statistics
Matches: 177, Mismatches: 38, Indels: 48
0.67 0.14 0.18
Matches are distributed among these distances:
7 5 0.03
8 25 0.14
9 62 0.35
10 61 0.34
11 22 0.12
12 2 0.01
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:105457746 original size:28 final size:27
Alignment explanation
Indices: 105457676--105457751 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
105457666 AATACGTTTT
**
105457676 TTAATTTAAATATTTTAAATAAGCTTTA
1 TTAATTTTTATATTTT-AATAAGCTTTA
* *
105457704 CTAA-ATTTATAATTTTAATAAGCTTATA
1 TTAATTTTTAT-ATTTTAATAAGCTT-TA
105457732 TTAATTTTTATA-TTTAATAA
1 TTAATTTTTATATTTTAATAA
105457752 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
27 20 0.51
28 14 0.36
29 5 0.13
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (27 bp):
TTAATTTTTATATTTTAATAAGCTTTA
Found at i:105457787 original size:18 final size:19
Alignment explanation
Indices: 105457752--105457800 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
105457742 TATTTAATAA
*
105457752 TTTTATTTTTCT-ACTTTT
1 TTTTATTTTTATGACTTTT
105457770 TTTTATTTTTATGA-TTTT
1 TTTTATTTTTATGACTTTT
* *
105457788 TTATAATTTTATG
1 TTTTATTTTTATG
105457801 GGGAAAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 26 0.96
19 1 0.04
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.73
Consensus pattern (19 bp):
TTTTATTTTTATGACTTTT
Found at i:105457933 original size:30 final size:31
Alignment explanation
Indices: 105457897--105457956 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
105457887 GATAAAAATC
105457897 GTTAAC-AAATGAGCTTAATTGATTGTTTTA
1 GTTAACAAAATGAGCTTAATTGATTGTTTTA
*
105457927 GTTAACAAAATGAGCTTAATTGATTTTTTT
1 GTTAACAAAATGAGCTTAATTGATTGTTTT
105457957 TTTTTTTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 6 0.21
31 22 0.79
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (31 bp):
GTTAACAAAATGAGCTTAATTGATTGTTTTA
Found at i:105459294 original size:23 final size:23
Alignment explanation
Indices: 105459251--105459297 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
105459241 AAAATAATCT
*
105459251 TATTTTTAATTAAATTTAATTAA
1 TATTTTTAATTAAATTAAATTAA
*
105459274 TATTTTTAA-TATATTCAAATTAA
1 TATTTTTAATTAAATT-AAATTAA
105459297 T
1 T
105459298 GATGTATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTTTTAATTAAATTAAATTAA
Found at i:105462103 original size:20 final size:23
Alignment explanation
Indices: 105462075--105462121 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
105462065 ATAATGTAAC
105462075 AAATGTTAAC-AT-TTTGTAAAA
1 AAATGTTAACTATATTTGTAAAA
*
105462096 AAAT-TTAACTCTATTTGTAAAA
1 AAATGTTAACTATATTTGTAAAA
105462118 AAAT
1 AAAT
105462122 ATAAAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 5 0.22
22 13 0.57
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.38
Consensus pattern (23 bp):
AAATGTTAACTATATTTGTAAAA
Found at i:105467072 original size:20 final size:20
Alignment explanation
Indices: 105467031--105467073 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
105467021 ACCCATGTAG
* * *
105467031 TCCAAATATTTTCAACTTTT
1 TCCAAAAATTTTCAAATGTT
105467051 TCCAAAAATTTTCAAATGTT
1 TCCAAAAATTTTCAAATGTT
105467071 TCC
1 TCC
105467074 TATTTAGTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.44
Consensus pattern (20 bp):
TCCAAAAATTTTCAAATGTT
Found at i:105476133 original size:97 final size:98
Alignment explanation
Indices: 105476025--105476220 Score: 367
Period size: 97 Copynumber: 2.0 Consensus size: 98
105476015 TCTAATTACC
105476025 TAAGTAGATTAAAAATAAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
1 TAAGTAGATTAAAAATAAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
105476090 TGTAATATTTAGATTTTCCCTGATTTTTGGTTT
66 TGTAATATTTAGATTTTCCCTGATTTTTGGTTT
*
105476123 TAAGTA-ATTAAAAATTAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
1 TAAGTAGATTAAAAATAAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
*
105476187 TGTAATATTTGGATTTTCCCTGATTTTTGGTTT
66 TGTAATATTTAGATTTTCCCTGATTTTTGGTTT
105476220 T
1 T
105476221 TATAAAATAT
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
97 90 0.94
98 6 0.06
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (98 bp):
TAAGTAGATTAAAAATAAGTATCTAATCACCTATCATATCAGCTTCCAGATCTGGTGGAATTTTC
TGTAATATTTAGATTTTCCCTGATTTTTGGTTT
Found at i:105486590 original size:252 final size:252
Alignment explanation
Indices: 105486145--105486654 Score: 1020
Period size: 252 Copynumber: 2.0 Consensus size: 252
105486135 GATCCAAAGG
105486145 TGATTATCTAAGCACCCATGCCTTATTTTTTCTTGCTGGTTTCAATCGTGATTTGAACCTTCAAC
1 TGATTATCTAAGCACCCATGCCTTATTTTTTCTTGCTGGTTTCAATCGTGATTTGAACCTTCAAC
105486210 TAATTAGAAGAACATATATTTTTGTTCCATTACAGTGAGTTTAACATGATTCATTTGTGTAATTT
66 TAATTAGAAGAACATATATTTTTGTTCCATTACAGTGAGTTTAACATGATTCATTTGTGTAATTT
105486275 TGTAATTGTATTCTTGGAAAAATGTCAGGACACTTATTGTGCGTTTAAAATGATTCATTTGTGTA
131 TGTAATTGTATTCTTGGAAAAATGTCAGGACACTTATTGTGCGTTTAAAATGATTCATTTGTGTA
105486340 ATTTCTTTCCTGATTGGTGGTGTGAATGCACATGCTCATGGTTATGGTAATAAATTT
196 ATTTCTTTCCTGATTGGTGGTGTGAATGCACATGCTCATGGTTATGGTAATAAATTT
105486397 TGATTATCTAAGCACCCATGCCTTATTTTTTCTTGCTGGTTTCAATCGTGATTTGAACCTTCAAC
1 TGATTATCTAAGCACCCATGCCTTATTTTTTCTTGCTGGTTTCAATCGTGATTTGAACCTTCAAC
105486462 TAATTAGAAGAACATATATTTTTGTTCCATTACAGTGAGTTTAACATGATTCATTTGTGTAATTT
66 TAATTAGAAGAACATATATTTTTGTTCCATTACAGTGAGTTTAACATGATTCATTTGTGTAATTT
105486527 TGTAATTGTATTCTTGGAAAAATGTCAGGACACTTATTGTGCGTTTAAAATGATTCATTTGTGTA
131 TGTAATTGTATTCTTGGAAAAATGTCAGGACACTTATTGTGCGTTTAAAATGATTCATTTGTGTA
105486592 ATTTCTTTCCTGATTGGTGGTGTGAATGCACATGCTCATGGTTATGGTAATAAATTT
196 ATTTCTTTCCTGATTGGTGGTGTGAATGCACATGCTCATGGTTATGGTAATAAATTT
105486649 TGATTA
1 TGATTA
105486655 CTTGATTGGA
Statistics
Matches: 258, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
252 258 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (252 bp):
TGATTATCTAAGCACCCATGCCTTATTTTTTCTTGCTGGTTTCAATCGTGATTTGAACCTTCAAC
TAATTAGAAGAACATATATTTTTGTTCCATTACAGTGAGTTTAACATGATTCATTTGTGTAATTT
TGTAATTGTATTCTTGGAAAAATGTCAGGACACTTATTGTGCGTTTAAAATGATTCATTTGTGTA
ATTTCTTTCCTGATTGGTGGTGTGAATGCACATGCTCATGGTTATGGTAATAAATTT
Found at i:105490822 original size:20 final size:21
Alignment explanation
Indices: 105490775--105490822 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
105490765 AATAAAAATC
*
105490775 ATTAAATTATTAAAAAGTATA
1 ATTAAATTATTAAAAAATATA
** *
105490796 AAAAAATT-TTAAAAAATTTA
1 ATTAAATTATTAAAAAATATA
105490816 ATTAAAT
1 ATTAAAT
105490823 GTTGACATGT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
ATTAAATTATTAAAAAATATA
Found at i:105491941 original size:24 final size:24
Alignment explanation
Indices: 105491914--105491967 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
105491904 ATAATAAAAA
*
105491914 TATAATTTTAT-TATTTTAATAGTT
1 TATAATTTTATAT-TTTTAATAGAT
105491938 TAT-ATCTTTATATTTTTAATAGAT
1 TATAAT-TTTATATTTTTAATAGAT
105491962 TA-AATT
1 TATAATT
105491968 ATTTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
23 3 0.12
24 22 0.85
25 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (24 bp):
TATAATTTTATATTTTTAATAGAT
Found at i:105492472 original size:3 final size:3
Alignment explanation
Indices: 105492464--105492488 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
105492454 TTTACTTAGG
105492464 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
105492489 GTTTTTAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:105494311 original size:26 final size:26
Alignment explanation
Indices: 105494282--105494389 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
105494272 TGGTACAAAT
*
105494282 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
* *
105494308 TGATAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
105494334 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
* *
105494360 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
105494386 TGAT
1 TGAT
105494390 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGATAAATGTTCCA
Found at i:105505398 original size:39 final size:39
Alignment explanation
Indices: 105505324--105505407 Score: 107
Period size: 39 Copynumber: 2.2 Consensus size: 39
105505314 AAGAGAAGGC
105505324 TATAAATATGTTTAATCCATAACCCCTTCCTAACCTTTA
1 TATAAATATGTTTAATCCATAACCCCTTCCTAACCTTTA
* * * *
105505363 TATATATATGTTTAATTCGTAA-CTCTTCCTCAACCTTTA
1 TATAAATATGTTTAATCCATAACCCCTTCCT-AACCTTTA
*
105505402 AATAAA
1 TATAAA
105505408 AGAATAATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 7 0.18
39 31 0.82
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (39 bp):
TATAAATATGTTTAATCCATAACCCCTTCCTAACCTTTA
Found at i:105514593 original size:77 final size:77
Alignment explanation
Indices: 105514512--105514665 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
105514502 AAATTGTAAG
*
105514512 AAAACATAAAAAGGTTAATAGTTTTATGTTTTTTTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
1 AAAACATAAAAAGGTTAATAGTTTTATGTTTTATTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
105514577 AAAAATCCTTAC
66 AAAAATCCTTAC
* *
105514589 AAAACATAAAAAGGTTAATAGTTTTTTGTTTTATTGCAAATTTGGCTAGGATTGGGTTCTAGTCA
1 AAAACATAAAAAGGTTAATAGTTTTATGTTTTATTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
105514654 AAAAATCCTTAC
66 AAAAATCCTTAC
105514666 TTGAGGCTTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (77 bp):
AAAACATAAAAAGGTTAATAGTTTTATGTTTTATTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
AAAAATCCTTAC
Found at i:105514843 original size:20 final size:19
Alignment explanation
Indices: 105514809--105514856 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
105514799 GTTATTTGAA
*
105514809 TTTTAT-ATTTTATAATTT
1 TTTTATAATTTTATAACTT
105514827 TTTTATAATTCTTATAACTT
1 TTTTATAATT-TTATAACTT
*
105514847 TTTAATAATT
1 TTTTATAATT
105514857 AGTAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 6 0.23
19 3 0.12
20 17 0.65
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTATAACTT
Found at i:105517788 original size:5 final size:5
Alignment explanation
Indices: 105517778--105517809 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
105517768 TTTTGATTTT
105517778 AATAA AATAA AATAA AAT-- AATAA AATAA AATA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATA
105517810 TCTTTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
3 3 0.12
5 22 0.88
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:105517801 original size:13 final size:13
Alignment explanation
Indices: 105517783--105517809 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
105517773 ATTTTAATAA
105517783 AATAAAATAAAAT
1 AATAAAATAAAAT
105517796 AATAAAATAAAAT
1 AATAAAATAAAAT
105517809 A
1 A
105517810 TCTTTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AATAAAATAAAAT
Found at i:105526697 original size:12 final size:12
Alignment explanation
Indices: 105526680--105526706 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
105526670 CCTTCTTCTC
105526680 CCCTTTCCCCTT
1 CCCTTTCCCCTT
105526692 CCCTTTCCCCTT
1 CCCTTTCCCCTT
105526704 CCC
1 CCC
105526707 CTTGGGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (12 bp):
CCCTTTCCCCTT
Found at i:105526828 original size:25 final size:27
Alignment explanation
Indices: 105526768--105526828 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
105526758 CCAGGTAAGG
*
105526768 CTTCTTCTCCTTCATCCGTTCTTCATTC
1 CTTC-TCTTCTTCATCCGTTCTTCATTC
*
105526796 CTT-T-TTCTTCTTCCGTTCTTCA-T-
1 CTTCTCTTCTTCATCCGTTCTTCATTC
105526819 CTTCTCTTCT
1 CTTCTCTTCT
105526829 CAGCATATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 2 0.07
25 20 0.69
26 1 0.03
28 3 0.10
ACGTcount: A:0.05, C:0.36, G:0.03, T:0.56
Consensus pattern (27 bp):
CTTCTCTTCTTCATCCGTTCTTCATTC
Found at i:105529531 original size:4 final size:4
Alignment explanation
Indices: 105529522--105529555 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
105529512 AAGTTTTATT
105529522 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
105529556 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:105529563 original size:22 final size:22
Alignment explanation
Indices: 105529505--105529564 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
105529495 AAGTGGCCCA
*
105529505 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
105529529 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
105529550 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
105529565 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:105531931 original size:18 final size:18
Alignment explanation
Indices: 105531910--105531948 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
105531900 GATTGAGAGT
* *
105531910 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
105531928 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
105531946 GAA
1 GAA
105531949 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:105533263 original size:4 final size:4
Alignment explanation
Indices: 105533254--105533287 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
105533244 AAAGTTTATT
105533254 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
105533288 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:105533295 original size:22 final size:21
Alignment explanation
Indices: 105533248--105533296 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
105533238 AGTTGTAAAG
*
105533248 TTTATTTTTATTTATTTATTTA
1 TTTA-TTTTATTTATTTAATTA
105533270 TTTATTTTATTTAGTTTAAATT-
1 TTTATTTTATTTA-TTT-AATTA
105533292 TTTAT
1 TTTAT
105533297 ATTCAGTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 9 0.38
22 12 0.50
23 3 0.12
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTATTTTATTTATTTAATTA
Found at i:105535489 original size:21 final size:21
Alignment explanation
Indices: 105535463--105535514 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
105535453 CGCTGTTTCT
*
105535463 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
105535484 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
105535505 AATCTCACCG
1 AATCTCACCG
105535515 TCACCGCTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.37, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:105541979 original size:44 final size:44
Alignment explanation
Indices: 105541916--105542002 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
105541906 CCTTTCTCTC
*
105541916 AATTTATAAAATTTGGTGTGTCAAGGCAAGCTATTTTGTAACCT
1 AATTTATAAAATTTGGTGTGTCAAGGCAAGCCATTTTGTAACCT
*
105541960 AATTTATAATATTTGGTGTGTCAAGGCAAGCCATTTTGTAACC
1 AATTTATAAAATTTGGTGTGTCAAGGCAAGCCATTTTGTAACC
105542003 CATCTTTCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (44 bp):
AATTTATAAAATTTGGTGTGTCAAGGCAAGCCATTTTGTAACCT
Found at i:105550054 original size:13 final size:12
Alignment explanation
Indices: 105550023--105550053 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
105550013 ATGTGTGAGG
*
105550023 GTTTTTGCTTTT
1 GTTTTTTCTTTT
105550035 GTTTTTTCTTTT
1 GTTTTTTCTTTT
105550047 GTTTTTT
1 GTTTTTT
105550054 TAACAGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.06, G:0.13, T:0.81
Consensus pattern (12 bp):
GTTTTTTCTTTT
Found at i:105561418 original size:18 final size:19
Alignment explanation
Indices: 105561373--105561419 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
105561363 GTATATATTT
105561373 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
105561391 TAAATCTTATTT-GGTAGA
1 TAAATTTTATTTAGGTAGA
*
105561409 TAAGTTTTATT
1 TAAATTTTATT
105561420 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:105561481 original size:43 final size:43
Alignment explanation
Indices: 105561433--105561525 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
105561423 ATTCTAGAAA
105561433 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
105561476 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
105561519 TATTTTC
1 TATTTTC
105561526 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:105566157 original size:19 final size:19
Alignment explanation
Indices: 105566111--105566158 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
105566101 GTATATATTT
105566111 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
105566129 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
105566148 TAAGTTTTATT
1 TAAATTTTATT
105566159 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:105566220 original size:43 final size:43
Alignment explanation
Indices: 105566168--105566264 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
105566158 TCATATTCTA
*
105566168 GAAA-TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAG
1 GAAACTATTTTCT-TTTTATATTTTAGTAGTTTACTAGAATAAG
* *
105566210 GGAACTATTTTCTTTTTATATTTTAGTAGTTTATTAGAATAAG
1 GAAACTATTTTCTTTTTATATTTTAGTAGTTTACTAGAATAAG
105566253 GAAACTATTTTC
1 GAAACTATTTTC
105566265 CCAATTAGGA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 3 0.06
43 45 0.92
44 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (43 bp):
GAAACTATTTTCTTTTTATATTTTAGTAGTTTACTAGAATAAG
Found at i:105568706 original size:17 final size:17
Alignment explanation
Indices: 105568681--105568719 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
105568671 ATACAAGCTA
* *
105568681 TAAACAAAAATAGTTAT
1 TAAAGAAAAATAATTAT
*
105568698 TAAAGAAAAATAATTTT
1 TAAAGAAAAATAATTAT
105568715 TAAAG
1 TAAAG
105568720 CTATTTTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (17 bp):
TAAAGAAAAATAATTAT
Found at i:105569789 original size:20 final size:19
Alignment explanation
Indices: 105569737--105569788 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
105569727 AGAAATATAA
105569737 ATTTTAAAATTTTT-ACAAAT
1 ATTTT-AAATTTTTGA-AAAT
105569757 ATTTTAAATTTTTGAAAAT
1 ATTTTAAATTTTTGAAAAT
105569776 AGTTTT-AATTTTT
1 A-TTTTAAATTTTT
105569789 TTTTGTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 20 0.67
20 10 0.33
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (19 bp):
ATTTTAAATTTTTGAAAAT
Found at i:105570006 original size:53 final size:55
Alignment explanation
Indices: 105569901--105570007 Score: 157
Period size: 56 Copynumber: 2.0 Consensus size: 55
105569891 ATAAATTATT
*
105569901 TTCATATAATTTATACCTTTCAATAAATCATCAACAACTCAAACATGAAAACTATC
1 TTCATATAATTTATACCTTTCAACAAAT-ATCAACAACTCAAACATGAAAACTATC
*
105569957 TTCATATAATTTATATCC-TTCAACAAAT-T-GACAACTCAAACATGAAAACTA
1 TTCATATAATTTATA-CCTTTCAACAAATATCAACAACTCAAACATGAAAACTA
105570008 CGTTCAAACA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
53 21 0.44
54 1 0.02
56 24 0.50
57 2 0.04
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.32
Consensus pattern (55 bp):
TTCATATAATTTATACCTTTCAACAAATATCAACAACTCAAACATGAAAACTATC
Found at i:105601868 original size:31 final size:29
Alignment explanation
Indices: 105601833--105601913 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
105601823 AATCTCAAAA
*
105601833 TTATATATGAAATTT-ACTTTAATGTAAAATT
1 TTATACATGAAATTTGA-TTT--TGTAAAATT
* **
105601864 TTATACATGAACTTTGATTTTGTGCAATT
1 TTATACATGAAATTTGATTTTGTAAAATT
105601893 TTATACATGAAATTTTGATTT
1 TTATACATGAAA-TTTGATTT
105601914 GATCCAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 18 0.42
30 8 0.19
31 16 0.37
32 1 0.02
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.49
Consensus pattern (29 bp):
TTATACATGAAATTTGATTTTGTAAAATT
Found at i:105601922 original size:30 final size:29
Alignment explanation
Indices: 105601860--105601922 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
105601850 TTTAATGTAA
*
105601860 AATTTTATACATGAACTTTGATTTTGTGC
1 AATTTTATACATGAACTTTGATTTTGTCC
*
105601889 AATTTTATACATGAAATTTTGA-TTTGATCC
1 AATTTTATACATG-AACTTTGATTTTG-TCC
105601919 AATT
1 AATT
105601923 CTTACAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.48
Consensus pattern (29 bp):
AATTTTATACATGAACTTTGATTTTGTCC
Found at i:105602340 original size:32 final size:32
Alignment explanation
Indices: 105602304--105602370 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
105602294 AGTATTAAAG
105602304 GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
1 GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
*
105602336 GCCCTTGAATAATTTCCAAAAAGAAAAATTAA
1 GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
105602368 GCC
1 GCC
105602371 ACTCTAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (32 bp):
GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
Found at i:105606912 original size:20 final size:20
Alignment explanation
Indices: 105606883--105606961 Score: 63
Period size: 20 Copynumber: 4.0 Consensus size: 20
105606873 TAAAGTGCAT
* *
105606883 ATTAGAACACGAAGCACATC
1 ATTAGCACACAAAGCACATC
* **
105606903 ATTAGCACACGAAGTGCATC
1 ATTAGCACACAAAGCACATC
* *
105606923 A-TGGTACACAAAGCTACATC
1 ATTAGCACACAAAGC-ACATC
*
105606943 -TTAGCGCACAAAGCACATC
1 ATTAGCACACAAAGCACATC
105606962 TTGGTACATG
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
19 14 0.30
20 32 0.70
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.18
Consensus pattern (20 bp):
ATTAGCACACAAAGCACATC
Found at i:105617833 original size:18 final size:17
Alignment explanation
Indices: 105617810--105617843 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
105617800 CCACAATTAT
*
105617810 ATACACTTTAATATCAAA
1 ATACACATTAAT-TCAAA
105617828 ATACACATTAATTCAA
1 ATACACATTAATTCAA
105617844 TTCATCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (17 bp):
ATACACATTAATTCAAA
Found at i:105624049 original size:42 final size:41
Alignment explanation
Indices: 105623981--105624060 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 41
105623971 TTAGGCAGTG
*
105623981 TTTCTCTGTTATAAATCGCTGCTGATAAATGTCATCATGGGA
1 TTTCTCTGTTATAAATCACTGCTGAT-AATGTCATCATGGGA
* *
105624023 TTTCTCTGTTATCAATCACTGTTGATAATGTCATCATG
1 TTTCTCTGTTATAAATCACTGCTGATAATGTCATCATG
105624061 TGGTTACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 12 0.34
42 23 0.66
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.41
Consensus pattern (41 bp):
TTTCTCTGTTATAAATCACTGCTGATAATGTCATCATGGGA
Found at i:105626397 original size:3 final size:3
Alignment explanation
Indices: 105626389--105626421 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
105626379 TTGAACATTC
105626389 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
105626422 TAAGATTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:105627065 original size:9 final size:9
Alignment explanation
Indices: 105627039--105627107 Score: 54
Period size: 9 Copynumber: 7.6 Consensus size: 9
105627029 ATTCATTTTG
105627039 AAATTATAAA
1 AAATTA-AAA
105627049 AACA-TAAAA
1 AA-ATTAAAA
105627058 AAATT-AAA
1 AAATTAAAA
105627066 AAATTAAAA
1 AAATTAAAA
*
105627075 AAATCAAAA
1 AAATTAAAA
* *
105627084 TTAATT-TAA
1 -AAATTAAAA
105627093 AAATTATAAA
1 AAATTA-AAA
105627103 AAATT
1 AAATT
105627108 TGGACACCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
8 13 0.28
9 19 0.40
10 14 0.30
11 1 0.02
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (9 bp):
AAATTAAAA
Found at i:105627067 original size:17 final size:17
Alignment explanation
Indices: 105627039--105627107 Score: 57
Period size: 19 Copynumber: 3.8 Consensus size: 17
105627029 ATTCATTTTG
*
105627039 AAATTATAAAAACATAAAA
1 AAATTA-AAAAA-TTAAAA
105627058 AAATTAAAAAATTAAAA
1 AAATTAAAAAATTAAAA
* *
105627075 AAATCAAAATTAATTTAAA
1 AAATTAAAA--AATTAAAA
*
105627094 AATTATAAAAAATT
1 AAAT-TAAAAAATT
105627108 TGGACACCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
17 13 0.31
18 9 0.21
19 16 0.38
20 4 0.10
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
AAATTAAAAAATTAAAA
Found at i:105627077 original size:27 final size:27
Alignment explanation
Indices: 105627039--105627106 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
105627029 ATTCATTTTG
*
105627039 AAATTATAAAAA-CATAAAAAAATTAAA
1 AAATTAAAAAAATCA-AAAAAAATTAAA
** *
105627066 AAATTAAAAAAATCAAAATTAATTTAA
1 AAATTAAAAAAATCAAAAAAAATTAAA
105627093 AAATTATAAAAAAT
1 AAATTA-AAAAAAT
105627107 TTGGACACCC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 26 0.74
28 9 0.26
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (27 bp):
AAATTAAAAAAATCAAAAAAAATTAAA
Found at i:105627243 original size:42 final size:43
Alignment explanation
Indices: 105627163--105627250 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
105627153 TAACAACCAT
*
105627163 TAAAATTATATGGTTTTTTAATTAATTTCTAATAATTTTTTTA
1 TAAAATTATATGATTTTTTAATTAATTTCTAATAATTTTTTTA
* *
105627206 TAAAATT-TAATGATTTTTTAA-TAATTT-TATGTTATTTTTTTA
1 TAAAATTAT-ATGATTTTTTAATTAATTTCTA-ATAATTTTTTTA
105627248 TAA
1 TAA
105627251 TTTTAGATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
41 2 0.05
42 20 0.50
43 18 0.45
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (43 bp):
TAAAATTATATGATTTTTTAATTAATTTCTAATAATTTTTTTA
Found at i:105635510 original size:2 final size:2
Alignment explanation
Indices: 105635503--105635550 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
105635493 GGGAGAGTGA
105635503 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
105635545 AG AG AG
1 AG AG AG
105635551 TTTGTATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:105643575 original size:21 final size:21
Alignment explanation
Indices: 105643551--105643602 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
105643541 ACACATAAAT
*
105643551 TGCCTAAAATGACAAACGAGG
1 TGCCTGAAATGACAAACGAGG
* * *
105643572 TGCCTGATACGACACACGAGG
1 TGCCTGAAATGACAAACGAGG
105643593 TGCCTGAAAT
1 TGCCTGAAAT
105643603 ACGACACATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (21 bp):
TGCCTGAAATGACAAACGAGG
Found at i:105643608 original size:23 final size:21
Alignment explanation
Indices: 105643561--105643610 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
105643551 TGCCTAAAAT
*
105643561 GACAAACGAGGTGCCTGATAC
1 GACACACGAGGTGCCTGATAC
105643582 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG--ATAC
105643605 GACACA
1 GACACA
105643611 TAAAGTGCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 16 0.62
23 10 0.38
ACGTcount: A:0.36, C:0.26, G:0.26, T:0.12
Consensus pattern (21 bp):
GACACACGAGGTGCCTGATAC
Found at i:105643618 original size:23 final size:22
Alignment explanation
Indices: 105643571--105643622 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
105643561 GACAAACGAG
* *
105643571 GTGCCTG-ATACGACACACGAG
1 GTGCCTGAATACGACACACAAA
*
105643592 GTGCCTGAAATACGACACATAAA
1 GTGCCTG-AATACGACACACAAA
105643615 GTGCCTGA
1 GTGCCTGA
105643623 TCAATAAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 7 0.27
22 1 0.04
23 18 0.69
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.17
Consensus pattern (22 bp):
GTGCCTGAATACGACACACAAA
Found at i:105644021 original size:15 final size:15
Alignment explanation
Indices: 105643995--105644051 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
105643985 CATATATATT
105643995 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
105644009 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
105644024 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
105644039 ATATAAATTCAAT
1 ATATAATTTCAAT
105644052 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:105645376 original size:42 final size:42
Alignment explanation
Indices: 105645320--105645399 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
105645310 GTTTCTTTAG
*
105645320 TTTATATAATATAATATAAT-ATA-ATTAAAACATAAAATATC
1 TTTATATAATATAATATAATAATATACT-AAACATAAAATATC
*
105645361 TTTATTATATTATAATATAATAATATACTAAACATAAAA
1 TTTA-TATAATATAATATAATAATATACTAAACATAAAA
105645400 AAAATCTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 4 0.12
42 15 0.44
43 13 0.38
44 2 0.06
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (42 bp):
TTTATATAATATAATATAATAATATACTAAACATAAAATATC
Found at i:105654161 original size:40 final size:40
Alignment explanation
Indices: 105654088--105654198 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
105654078 TATCTAGCAC
* * * *
105654088 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
* *
105654127 AGCCTGCGGGTCTTTAAGCTCGGATACAATTCCAGTACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
105654167 AGCCTGCGGGTCTTTAAGCCCGGATACAATTC
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTC
105654199 TACATCAAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 16 0.25
40 47 0.75
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:105661497 original size:14 final size:15
Alignment explanation
Indices: 105661464--105661508 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
105661454 CCTTTTTTTT
105661464 TAATGATTTTGGTAC
1 TAATGATTTTGGTAC
**
105661479 TTAATTTTTTTGGTA-
1 -TAATGATTTTGGTAC
105661494 TAATGATTTTGGTAC
1 TAATGATTTTGGTAC
105661509 ATATTAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 12 0.50
16 12 0.50
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.53
Consensus pattern (15 bp):
TAATGATTTTGGTAC
Found at i:105665203 original size:34 final size:35
Alignment explanation
Indices: 105665135--105665213 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
105665125 ATGTTAAACA
*
105665135 CTGACTCTCTTTCAAGTTGTTTTTCTTATACAACT
1 CTGACTCTCTTTCAAGTTATTTTTCTTATACAACT
* *
105665170 CTGACT-TCTTTTCATGTTATTTTT-TTATGCAACT
1 CTGACTCTC-TTTCAAGTTATTTTTCTTATACAACT
105665204 CCT-ACTCTCT
1 -CTGACTCTCT
105665214 CTCATGTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
34 15 0.39
35 23 0.61
ACGTcount: A:0.18, C:0.24, G:0.08, T:0.51
Consensus pattern (35 bp):
CTGACTCTCTTTCAAGTTATTTTTCTTATACAACT
Found at i:105665219 original size:34 final size:35
Alignment explanation
Indices: 105665135--105665226 Score: 109
Period size: 34 Copynumber: 2.7 Consensus size: 35
105665125 ATGTTAAACA
*
105665135 CTGACTCTCTTTCAAGTTGTTTTTCTTATACAACT
1 CTGACTCTCTTTCATGTTGTTTTTCTTATACAACT
* *
105665170 CTGACT-TCTTTTCATGTTATTTTT-TTATGCAACT
1 CTGACTCTC-TTTCATGTTGTTTTTCTTATACAACT
*
105665204 CCT-ACTCTCTCTCATGTTGTTTT
1 -CTGACTCTCTTTCATGTTGTTTT
105665227 ATGTGCTATG
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
34 26 0.53
35 23 0.47
ACGTcount: A:0.16, C:0.23, G:0.09, T:0.52
Consensus pattern (35 bp):
CTGACTCTCTTTCATGTTGTTTTTCTTATACAACT
Found at i:105667708 original size:26 final size:26
Alignment explanation
Indices: 105667646--105667716 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
105667636 TCTCATCCCT
* ** * *
105667646 ATTTTGCCCCCAACAAAATTTTGATG
1 ATTTTGCCCCTAGTAAAATCTTGACG
*
105667672 ATTTTACCCCTAGTAAAATCTTGACG
1 ATTTTGCCCCTAGTAAAATCTTGACG
105667698 ATTTTGCCCCTAGTAAAAT
1 ATTTTGCCCCTAGTAAAAT
105667717 TATGAGAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (26 bp):
ATTTTGCCCCTAGTAAAATCTTGACG
Found at i:105678554 original size:3 final size:3
Alignment explanation
Indices: 105678548--105678572 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
105678538 AGAACAAAAA
105678548 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
105678573 TTTTGAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:105679720 original size:16 final size:17
Alignment explanation
Indices: 105679688--105679720 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
105679678 TTATTTTATG
*
105679688 TTAATTAATAGAAGCAT
1 TTAATTAATAAAAGCAT
105679705 TTAATT-ATAAAAGCAT
1 TTAATTAATAAAAGCAT
105679721 AAATAATGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
TTAATTAATAAAAGCAT
Found at i:105681989 original size:4 final size:4
Alignment explanation
Indices: 105681980--105682019 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
105681970 AAGAAGCAAA
* *
105681980 TATG TATG TATG TTTG TATG TATG TATG CATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
105682020 CATACCCCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:105689296 original size:16 final size:15
Alignment explanation
Indices: 105689277--105689315 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
105689267 ATTTAAAAGA
105689277 TTTAAATTCAAAAAAC
1 TTTAAATTC-AAAAAC
* *
105689293 TTTAATTTCAAAAAG
1 TTTAAATTCAAAAAC
105689308 TTTAAATT
1 TTTAAATT
105689316 TAGAAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (15 bp):
TTTAAATTCAAAAAC
Found at i:105689316 original size:16 final size:17
Alignment explanation
Indices: 105689271--105689316 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
105689261 TTCAAAATTT
105689271 AAAAGATTTAAA-TTCAA
1 AAAAG-TTTAAATTTCAA
*
105689288 AAAACTTT-AATTTC-A
1 AAAAGTTTAAATTTCAA
105689303 AAAAGTTTAAATTT
1 AAAAGTTTAAATTT
105689317 AGAAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 10 0.40
16 11 0.44
17 4 0.16
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAAGTTTAAATTTCAA
Found at i:105692504 original size:20 final size:21
Alignment explanation
Indices: 105692479--105692518 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105692469 CAAAGCAAAT
*
105692479 AAGGGC-ACACGTCCGTGTGA
1 AAGGGCGACACGCCCGTGTGA
105692499 AAGGGCGACACGCCCGTGTG
1 AAGGGCGACACGCCCGTGTG
105692519 TCTTCTAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AAGGGCGACACGCCCGTGTGA
Found at i:105693779 original size:48 final size:47
Alignment explanation
Indices: 105693700--105693973 Score: 298
Period size: 48 Copynumber: 5.7 Consensus size: 47
105693690 CAGGGTAAAT
* * * * * **
105693700 TGCCGATGCCATGTCTCAGACATGATTTTACACTGGCTCACATGTCGA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAC-A
105693748 -GCCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
1 TG-CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * *
105693795 TTGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAACA
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * *
105693843 TTGGCGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACA
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * * **
105693891 TTGGCGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATG
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * *
105693939 TGGTCGATGCCATGTCCCAGACATCGTCTTACACT
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACT
105693974 AGCACACATA
Statistics
Matches: 202, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 3 0.01
48 198 0.98
49 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
Found at i:105693866 original size:23 final size:23
Alignment explanation
Indices: 105693839--105693914 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 23
105693829 TGGCTCTTAT
105693839 AACATTGGCGATGTCATGTTCCA
1 AACATTGGCGATGTCATGTTCCA
*
105693862 AACA-TGGTC--T-TACACTGGCTCTCA
1 AACATTGG-CGATGT-CA-T-GTTC-CA
105693886 TAACATTGGCGATGTCATGTTCCA
1 -AACATTGGCGATGTCATGTTCCA
105693910 AACAT
1 AACAT
105693915 GGTCTTACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 20
0.65 0.03 0.32
Matches are distributed among these distances:
20 1 0.02
21 3 0.07
22 4 0.10
23 13 0.32
24 4 0.10
25 8 0.20
26 4 0.10
27 3 0.07
28 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (23 bp):
AACATTGGCGATGTCATGTTCCA
Found at i:105693867 original size:96 final size:96
Alignment explanation
Indices: 105693751--105693973 Score: 351
Period size: 96 Copynumber: 2.3 Consensus size: 96
105693741 ATGTCGAGCC
*
105693751 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGCCATGTTCCAAA
*
105693816 CATGGTCTTACACTGGCTCTTATAACAT-TGG-
66 CATGGTCTTACACTGGCTCTCAT-A-ATGTGGT
* * *
105693847 CGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGTCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGCCATGTTCCAAA
105693912 CATGGTCTTACACTGGCTCTCATAATGTGGT
66 CATGGTCTTACACTGGCTCTCATAATGTGGT
* *
105693943 CGATGCCATGTCCCAGACATCGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
105693974 AGCACACATA
Statistics
Matches: 116, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 2 0.02
95 4 0.03
96 110 0.95
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCTCATAATGTGGT
Found at i:105701630 original size:48 final size:48
Alignment explanation
Indices: 105701445--105701717 Score: 237
Period size: 48 Copynumber: 5.7 Consensus size: 48
105701435 GTCAATTATT
* * * * **
105701445 AATGCCATGTCCCAAACATGGTTTTACACTGGCTCACGTGTCGA--GCC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAAC-ATTGCC
* * * * ** *
105701492 AGATGCCTTGTCTCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCC
1 A-ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
* * *
105701541 AATGCCATGTCCCAGACATGGTTTTACACTAACTCTCATAACATTGCC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
* * * *
105701589 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTATAACATTGGC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
* * * * ** *
105701637 GATGCCATGTTCCAAATATGGTCTTAC-CGTGGCTCTCATAATGTGGCC
1 AATGCCATGTCCCAAACATGGTCTTACAC-TAGCTCTCATAACATTGCC
* *
105701685 AATGCTATGTCCCAGACATGGTCTTACACTAGC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGC
105701718 ACACATATCA
Statistics
Matches: 186, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
47 3 0.02
48 178 0.96
49 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
Found at i:105713418 original size:40 final size:41
Alignment explanation
Indices: 105713366--105713462 Score: 144
Period size: 40 Copynumber: 2.4 Consensus size: 41
105713356 CTATCTTGGT
105713366 ATCGCACACTTAGTGCCT-CTTATAACTGAAGCTATTCCAA
1 ATCGCACACTTAGTGCCTACTTATAACTGAAGCTATTCCAA
* * * *
105713406 TTCGCACACTTAGTG-CTATTTATAGCTGAAGCTATTTCAA
1 ATCGCACACTTAGTGCCTACTTATAACTGAAGCTATTCCAA
105713446 ATCGCACACTTAGTGCC
1 ATCGCACACTTAGTGCC
105713463 GAACATAGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.04
40 47 0.94
41 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (41 bp):
ATCGCACACTTAGTGCCTACTTATAACTGAAGCTATTCCAA
Found at i:105722025 original size:21 final size:21
Alignment explanation
Indices: 105721999--105722039 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105721989 AAGAGAATCC
*
105721999 GGCTTTTAAGATGGATCAATT
1 GGCTTTCAAGATGGATCAATT
*
105722020 GGCTTTCGAGATGGATCAAT
1 GGCTTTCAAGATGGATCAAT
105722040 CGACTTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (21 bp):
GGCTTTCAAGATGGATCAATT
Found at i:105722046 original size:21 final size:21
Alignment explanation
Indices: 105722007--105722047 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105721997 CCGGCTTTTA
* *
105722007 AGATGGATCAATTGGCTTTCG
1 AGATGGATCAATCGACTTTCG
105722028 AGATGGATCAATCGACTTTC
1 AGATGGATCAATCGACTTTC
105722048 TTCGAGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (21 bp):
AGATGGATCAATCGACTTTCG
Found at i:105725711 original size:99 final size:99
Alignment explanation
Indices: 105725540--105725723 Score: 359
Period size: 99 Copynumber: 1.9 Consensus size: 99
105725530 ACTAATATGT
105725540 ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
1 ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
105725605 TGGTAATGTTCCAAGATATTACCTATTCGCTGGC
66 TGGTAATGTTCCAAGATATTACCTATTCGCTGGC
*
105725639 ATTTATCGCAAGTAGCAACGTACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
1 ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
105725704 TGGTAATGTTCCAAGATATT
66 TGGTAATGTTCCAAGATATT
105725724 CAATGCTTCT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 84 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (99 bp):
ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
TGGTAATGTTCCAAGATATTACCTATTCGCTGGC
Found at i:105730299 original size:10 final size:10
Alignment explanation
Indices: 105730272--105730311 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
105730262 TTAAATTCTA
105730272 AAAGATAAAT
1 AAAGATAAAT
105730282 ACAA-ATAAAT
1 A-AAGATAAAT
*
105730292 AAAGATAATT
1 AAAGATAAAT
105730302 AAAGATAAAT
1 AAAGATAAAT
105730312 GATAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:105730523 original size:14 final size:15
Alignment explanation
Indices: 105730504--105730534 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
105730494 AAATTCGCAC
105730504 TTTTTTCCCTT-AAT
1 TTTTTTCCCTTCAAT
105730518 TTTTTTCCCTTCAAT
1 TTTTTTCCCTTCAAT
105730533 TT
1 TT
105730535 AGTCCCTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTTCCCTTCAAT
Found at i:105735411 original size:48 final size:48
Alignment explanation
Indices: 105735355--105735448 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
105735345 GGTTGTTGGA
*
105735355 TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTGTGCTATCAGT
1 TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTATGCTATCAGT
* *
105735403 TCCCCGCTTCGCATTTCGTGGTTTCTCATTGCCACTTATGCTATCA
1 TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTATGCTATCA
105735449 ATACTGTGGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.12, C:0.34, G:0.17, T:0.37
Consensus pattern (48 bp):
TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTATGCTATCAGT
Found at i:105743977 original size:141 final size:137
Alignment explanation
Indices: 105743724--105743977 Score: 289
Period size: 141 Copynumber: 1.8 Consensus size: 137
105743714 TGAGCCAGTG
* *
105743724 TAAGACATGTCTGGGACATGCATCAGCCACGATATGAGAGCCAGTGTAAGACATGTCTGGGACAT
1 TAAGACATGTCTGGGACATGCATCAGACACGATATGAGAGCCAGTGTAAGACATGTCTGGGACAG
* ** * * *
105743789 GCTTCGGCCTCAGGATATTCAAGCTAGTGTAAGACCTATCTGGGACATAGTGCCAGCTTATTGTG
66 GCATCGAACTCA-GATATACAAGCCAGTGTAAGACCTATCTGAGACATAGTGCCAGCTTATTGTG
105743854 TGTCAGCA
130 TGTCAGCA
* *
105743862 TAAGACCTGTCTGGGACATGTCATC-GACACCGATAGATGAGAGCCAGTGTAAGACTTGTCTGGG
1 TAAGACATGTCTGGGACATG-CATCAGACA-CGAT--ATGAGAGCCAGTGTAAGACATGTCTGGG
* * * *
105743926 ACACGGCATCGAATTTA-ATGTACTAGCCAGTGTAAGACC-ATGCCTGAGACAT
62 ACA-GGCATCGAACTCAGATATACAAGCCAGTGTAAGACCTAT--CTGAGACAT
105743978 GACGTCAGCA
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
138 22 0.23
139 10 0.11
140 18 0.19
141 38 0.40
142 7 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (137 bp):
TAAGACATGTCTGGGACATGCATCAGACACGATATGAGAGCCAGTGTAAGACATGTCTGGGACAG
GCATCGAACTCAGATATACAAGCCAGTGTAAGACCTATCTGAGACATAGTGCCAGCTTATTGTGT
GTCAGCA
Found at i:105745270 original size:20 final size:21
Alignment explanation
Indices: 105745232--105745270 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
105745222 TCAACAGGGC
105745232 CACACGGACGTGTTGCCCTTT
1 CACACGGACGTGTTGCCCTTT
*
105745253 CACACGGGCGTG-TGCCCT
1 CACACGGACGTGTTGCCCT
105745271 GTTCCAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (21 bp):
CACACGGACGTGTTGCCCTTT
Found at i:105749766 original size:7 final size:7
Alignment explanation
Indices: 105749750--105749798 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
105749740 GGCAACCCAA
105749750 TTTTTA-
1 TTTTTAT
105749756 TTTTTAT
1 TTTTTAT
105749763 TTTTTAT
1 TTTTTAT
*
105749770 TTATTA-
1 TTTTTAT
*
105749776 -CTTTAT
1 TTTTTAT
105749782 TTTTTAT
1 TTTTTAT
105749789 TTTTTAT
1 TTTTTAT
105749796 TTT
1 TTT
105749799 ATTTGTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
5 3 0.08
6 6 0.17
7 27 0.75
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:105749780 original size:19 final size:19
Alignment explanation
Indices: 105749758--105749802 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
105749748 AATTTTTATT
105749758 TTTATTTTTTATTTATTAC
1 TTTATTTTTTATTTATTAC
* *
105749777 TTTATTTTTTATTTTTTAT
1 TTTATTTTTTATTTATTAC
105749796 TTTATTT
1 TTTATTT
105749803 GTTTGGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTATTTTTTATTTATTAC
Found at i:105750957 original size:96 final size:97
Alignment explanation
Indices: 105750793--105750976 Score: 298
Period size: 96 Copynumber: 1.9 Consensus size: 97
105750783 TTTTTAAGAA
* *
105750793 TGTGTTGGGCTGAGTAAATAAGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
1 TGTGTTGGGCTGAGTAAACAAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
*
105750858 ATATGTTCTTAAG-AAAAATAAAAATTAGTAG
66 ATATATTCTTAAGCAAAAATAAAAATTAGTAG
* * *
105750889 TGTGTTGGGTTGAGTAACCGAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
1 TGTGTTGGGCTGAGTAAACAAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
*
105750954 ATATATTCTTAAGCAAAACTAAA
66 ATATATTCTTAAGCAAAAATAAA
105750977 TAAATAAATA
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
96 72 0.90
97 8 0.10
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (97 bp):
TGTGTTGGGCTGAGTAAACAAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
ATATATTCTTAAGCAAAAATAAAAATTAGTAG
Found at i:105751598 original size:14 final size:13
Alignment explanation
Indices: 105751579--105751616 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
105751569 ATTTAATGTT
105751579 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
105751593 TAATTATTAAGGA
1 TAATTATTTAGGA
105751606 TAATTATTTAG
1 TAATTATTTAG
105751617 ATTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:105754603 original size:12 final size:12
Alignment explanation
Indices: 105754568--105754595 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
105754558 TGAGTTACAT
105754568 GGGCACGGACAC
1 GGGCACGGACAC
105754580 GGGCACGGACAC
1 GGGCACGGACAC
105754592 GGGC
1 GGGC
105754596 TGGGACACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.32, G:0.46, T:0.00
Consensus pattern (12 bp):
GGGCACGGACAC
Found at i:105754720 original size:21 final size:21
Alignment explanation
Indices: 105754680--105754721 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
105754670 CCTTACAGTA
* * *
105754680 TAAATTTTTCTAACTTTTTCC
1 TAAACTTTTCTAAATGTTTCC
105754701 TAAACTTTTCTAAATGTTTCC
1 TAAACTTTTCTAAATGTTTCC
105754722 AATTTAGTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.02, T:0.52
Consensus pattern (21 bp):
TAAACTTTTCTAAATGTTTCC
Found at i:105758679 original size:22 final size:22
Alignment explanation
Indices: 105758637--105758679 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
105758627 ATACTCTTCA
* *
105758637 TACTTTTAAATTTTAGTATTTT
1 TACTTTTAAATTTAAGAATTTT
105758659 TACTTTT-AATTCTAAGAATTT
1 TACTTTTAAATT-TAAGAATTT
105758680 AACCCCTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (22 bp):
TACTTTTAAATTTAAGAATTTT
Found at i:105763241 original size:15 final size:16
Alignment explanation
Indices: 105763207--105763244 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
105763197 AAGGAAAAGG
105763207 AAAGAAATTTGCTCAA
1 AAAGAAATTTGCTCAA
105763223 AAAGAAATATTG-T-AA
1 AAAGAAAT-TTGCTCAA
105763238 AAAGAAA
1 AAAGAAA
105763245 AATTTTCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 9 0.43
17 3 0.14
ACGTcount: A:0.61, C:0.05, G:0.13, T:0.21
Consensus pattern (16 bp):
AAAGAAATTTGCTCAA
Found at i:105770006 original size:23 final size:22
Alignment explanation
Indices: 105769961--105770006 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
105769951 CAACCAATCC
*
105769961 AATTCAACATATTTTCAAGATA
1 AATTCAACATATTTTCAAAATA
105769983 AATTCATACATATTTAT-AAAATA
1 AATTCA-ACATATTT-TCAAAATA
105770006 A
1 A
105770007 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTCAACATATTTTCAAAATA
Found at i:105774538 original size:138 final size:135
Alignment explanation
Indices: 105774241--105774657 Score: 599
Period size: 138 Copynumber: 3.1 Consensus size: 135
105774231 GAGAATATAG
105774241 ATATAATTAATATATGAATTTGATTCATACAAAATATTAA-TTATATA-TTA-CTGAATTTATTA
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTATATATTTATC-GAATTTATTA
* * * * * * *
105774303 ATATATATGGTAATATTAATTAATTTTGGCCAAAATAT-AAAGACATGGAAATTATTATTCTTTT
65 ATATAAATAGTTATA-TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTT
*
105774367 GGAAATA
129 GGAAAGA
* *
105774374 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATATTTTATCAAATTTTTT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATT-TATATA-TTTATCGAATTTATT
*
105774439 AATATAAATAGTTATACTAATTAATTTCGGTCAAAATATAAAAGACTTGAAAATTAATATTCTTT
64 AATATAAATAGTTATA-TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
105774504 TGGAAAGA
128 TGGAAAGA
*
105774512 ATATAATTAATATATGAATTTCATTCATACAAAATATTAATTGTATATATATTATCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATT-TATATAT-TTATCGAATTTATT
* * *
105774577 AATATAAACAATTATATGAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
64 AATATAAATAGTTATAT-AATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
105774642 TGGAAAGA
128 TGGAAAGA
105774650 ATATAATT
1 ATATAATT
105774658 CTTTTTTCTA
Statistics
Matches: 256, Mismatches: 20, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
133 40 0.16
134 1 0.00
135 6 0.02
137 45 0.18
138 164 0.64
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (135 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTATATATTTATCGAATTTATTAA
TATAAATAGTTATATAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG
AAAGA
Found at i:105774781 original size:74 final size:76
Alignment explanation
Indices: 105774633--105774781 Score: 248
Period size: 74 Copynumber: 2.0 Consensus size: 76
105774623 ATGAAAATTA
* * *
105774633 ATATTCTTTTGGAAAGAATATAATTCTTTTTTCTAACTTTCCATTTGTCTTTCTCTATTAATAAG
1 ATATTATTTTGGAAAGAATATAATTCTATTTTCTAACTTTCCATTTGTCCTTCTCTATTAATAAG
105774698 AGAATAATCCC
66 AGAATAATCCC
*
105774709 ATATTATTTTGGAAAGAATATAATTC-ATTTTCTAACTTTTCATTTG-CCTTCTCTATTAATAAG
1 ATATTATTTTGGAAAGAATATAATTCTATTTTCTAACTTTCCATTTGTCCTTCTCTATTAATAAG
105774772 AGAATAATCC
66 AGAATAATCC
105774782 TAATTTTTCT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
74 26 0.38
75 18 0.26
76 25 0.36
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.45
Consensus pattern (76 bp):
ATATTATTTTGGAAAGAATATAATTCTATTTTCTAACTTTCCATTTGTCCTTCTCTATTAATAAG
AGAATAATCCC
Found at i:105779694 original size:17 final size:18
Alignment explanation
Indices: 105779667--105779700 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
105779657 TTGTTCGATT
*
105779667 TTTTTGATGATTTTTACG
1 TTTTTGATGATTGTTACG
105779685 TTTTTG-TGATTGTTAC
1 TTTTTGATGATTGTTAC
105779701 TTAGTAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.06, G:0.18, T:0.62
Consensus pattern (18 bp):
TTTTTGATGATTGTTACG
Found at i:105780569 original size:43 final size:43
Alignment explanation
Indices: 105780406--105780570 Score: 126
Period size: 43 Copynumber: 3.8 Consensus size: 43
105780396 TTCTGATATG
* * **
105780406 TGATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
1 TGATTACATGTAAGACCACGTTTGGGACGTTGGCATCGA-TACA
* * * **
105780450 -GATTTA-AGTGTAAGACCATGTTTGGGACATCGGCATCG-TATT
1 TGA-TTACA-TGTAAGACCACGTTTGGGACGTTGGCATCGATACA
* * *
105780492 TGATTTCGTGTAAGACC-C-TATCTAGGACAG-TGGCATCGATACA
1 TGATTACATGTAAGACCACGT-T-TGGGAC-GTTGGCATCGATACA
105780535 TGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
105780571 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 19, Indels: 23
0.68 0.14 0.17
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 25 0.27
43 33 0.36
44 30 0.33
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TGATTACATGTAAGACCACGTTTGGGACGTTGGCATCGATACA
Found at i:105782196 original size:56 final size:56
Alignment explanation
Indices: 105782107--105782214 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
105782097 ATGGCATCGA
* * * *
105782107 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTCCGG
1 TATATATGTGCAAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATTCCGG
* *
105782163 TATATATGTGCAAGTAAGACTACGTCTAGTACGTTGGCATCGATATGTGATT
1 TATATATGTGCAAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
105782215 ACATGTAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
TATATATGTGCAAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATTCCGG
Found at i:105785702 original size:54 final size:55
Alignment explanation
Indices: 105785596--105785703 Score: 191
Period size: 55 Copynumber: 2.0 Consensus size: 55
105785586 GGCTTTGCGA
105785596 GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACGG
1 GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACGG
* *
105785651 GACCGATTTTTTCTTCTTGAGGTGCACCGGTTTTGTTTGTG-AAAAGAAAGACG
1 GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACG
105785704 AAACTATGAG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 12 0.24
55 39 0.76
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (55 bp):
GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACGG
Found at i:105790218 original size:33 final size:33
Alignment explanation
Indices: 105790176--105790242 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
105790166 TCAAAGATAG
105790176 ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
1 ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
*
105790209 ATTTGAGATCAGGTTACTATCAGTTGCGAGTAA
1 ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
105790242 A
1 A
105790243 AGATTTAGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (33 bp):
ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
Found at i:105794655 original size:50 final size:49
Alignment explanation
Indices: 105794584--105794828 Score: 316
Period size: 50 Copynumber: 4.9 Consensus size: 49
105794574 ACATTAAAGT
*
105794584 CGATGCCATGCCCCAGACATGGTCTTACACT-GACTCTCGAATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-AATATCGAGGC
* * *
105794634 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTATCG-GCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-ATATCGAG-GC
* * *
105794684 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-ATATCGAGGC
*
105794734 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ATATCTTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATATC--GAGGC
*
105794784 CGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCAAATATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-AATATC
105794829 CCTAGCATCA
Statistics
Matches: 172, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 159 0.92
51 2 0.01
52 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATATCGAGGC
Found at i:105795040 original size:29 final size:29
Alignment explanation
Indices: 105794998--105795081 Score: 159
Period size: 29 Copynumber: 2.9 Consensus size: 29
105794988 TCTTACTCGT
105794998 TCATATTCCATCAAATTTCCAATGTAATA
1 TCATATTCCATCAAATTTCCAATGTAATA
*
105795027 TCATATTCCATCAAATTTCCAATATAATA
1 TCATATTCCATCAAATTTCCAATGTAATA
105795056 TCATATTCCATCAAATTTCCAATGTA
1 TCATATTCCATCAAATTTCCAATGTA
105795082 TTCAATCATC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (29 bp):
TCATATTCCATCAAATTTCCAATGTAATA
Found at i:105799868 original size:12 final size:12
Alignment explanation
Indices: 105799851--105799875 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
105799841 ATAGAGATTA
105799851 TATCATATTAAC
1 TATCATATTAAC
105799863 TATCATATTAAC
1 TATCATATTAAC
105799875 T
1 T
105799876 TCTACAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TATCATATTAAC
Found at i:105806962 original size:30 final size:30
Alignment explanation
Indices: 105806928--105806991 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
105806918 ATAATAAATT
*
105806928 AATAATAAATATCTTATTAAAT-ATTAATAA
1 AATAATAAATATCTAATTAAATAATT-ATAA
** *
105806958 AATAATATTTTTCTAATTAAATAATTATAA
1 AATAATAAATATCTAATTAAATAATTATAA
105806988 AATA
1 AATA
105806992 TCATCAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 26 0.90
31 3 0.10
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATAAATATCTAATTAAATAATTATAA
Found at i:105809682 original size:90 final size:90
Alignment explanation
Indices: 105809588--105809767 Score: 306
Period size: 90 Copynumber: 2.0 Consensus size: 90
105809578 AGCATGTTAG
*
105809588 TCATGTAATTCACATTAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
1 TCATGTAATTCACATGAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
105809653 ATGTACTTTCCACATCATGTATTCA
66 ATGTACTTTCCACATCATGTATTCA
* * * *
105809678 TCATGTAATTCACATGAATAACAATAAACAAGTATGAACTTATCATTATTCACATTTCCTTATTC
1 TCATGTAATTCACATGAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
*
105809743 ATGTACTTTCCACATCTTGTATTCA
66 ATGTACTTTCCACATCATGTATTCA
105809768 AACTTCATAT
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.38
Consensus pattern (90 bp):
TCATGTAATTCACATGAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
ATGTACTTTCCACATCATGTATTCA
Found at i:105810071 original size:24 final size:25
Alignment explanation
Indices: 105809982--105810080 Score: 69
Period size: 24 Copynumber: 4.0 Consensus size: 25
105809972 TTCCAAGCCA
* * *
105809982 AATAACAAAAAGCTCATATGAACTT
1 AATAACAGAAAGCTCATAAGAGCTT
* * **
105810007 -GTAAC-GAGAAGCTTATCCGAGCTT
1 AATAACAGA-AAGCTCATAAGAGCTT
*
105810031 AATAACAGGAAGCTCATAAGAGCTT
1 AATAACAGAAAGCTCATAAGAGCTT
* **
105810056 AA-ATCAGAAAGCTCATGTGAGCTT
1 AATAACAGAAAGCTCATAAGAGCTT
105810080 A
1 A
105810081 GCGGGTAACT
Statistics
Matches: 56, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
23 1 0.02
24 35 0.62
25 19 0.34
26 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.23
Consensus pattern (25 bp):
AATAACAGAAAGCTCATAAGAGCTT
Found at i:105811029 original size:29 final size:30
Alignment explanation
Indices: 105810978--105811036 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
105810968 TTCGATTGAC
* *
105810978 CTAGGGGTAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTGTCAAAGT
* *
105811008 CTAGGGGCAAATTGGTCA-TTTGTCCAAGT
1 CTAGGGGCAAAATGGTCATTTTGTCAAAGT
105811037 ATGAATTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTGTCAAAGT
Found at i:105811489 original size:46 final size:46
Alignment explanation
Indices: 105811342--105811796 Score: 281
Period size: 46 Copynumber: 9.7 Consensus size: 46
105811332 GTTATTGTGG
* *
105811342 GCTAGTGTAAGCCATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGA
* * ** * * *
105811388 GCCAGTGTAAGACAATGTCTGGGGCATGGCATCGGCATTGA-GACGAGT
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-TACATTATGAGA
*
105811436 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGA
* * ** * *
105811482 GCCAGTGTAAGACCATGTCTGGGACGTGGCATCGGCATTGA-GATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACATTATGAGA
* * *
105811530 GCTAGTGCAAGACATG-CATGGGACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTC-TGGGACATGCATCGGCTACATTATGAGA
** *
105811576 GCTAGTGTAAGACCATGTCTGGGATGTTGCAT---CAACATTGA-GACGA
1 GCTAGTGTAAGA-CATGTCTGGGA-CATGCATCGGCTACATT-ATGA-GA
* * *
105811622 GTGCTAGTGTAAGACATGTCTGGGACATACATCGACCT-CGA-GATGTA-A
1 --GCTAGTGTAAGACATGTCTGGGACATGCATCG-GCTAC-ATTATG-AGA
* * * * *
105811670 GCCAGTGTAATACATGTTTGGGACATGCATCGGCTACGA-GATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-ATTATGAGA
* * * *
105811715 TC-AGTGTAAGGCTATGTCCGGGACATGGCATCGGCATAGA-TATGCTAGA
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-TACATTATG--AGA
*
105811764 GCTTGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
105811797 AGTACCTTAC
Statistics
Matches: 316, Mismatches: 60, Indels: 62
0.72 0.14 0.14
Matches are distributed among these distances:
44 8 0.03
45 25 0.08
46 112 0.35
47 68 0.22
48 68 0.22
49 6 0.02
50 28 0.09
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGA
Found at i:105811503 original size:94 final size:94
Alignment explanation
Indices: 105811342--105811796 Score: 489
Period size: 94 Copynumber: 4.8 Consensus size: 94
105811332 GTTATTGTGG
* * *
105811342 GCTAGTGTAAGCCATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACAATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
*
105811407 TGGGGCATGGCATCGGCATTGAGACGAGT
66 TGGGACATGGCATCGGCATTGAGACGAGT
*
105811436 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
* *
105811501 TGGGACGTGGCATCGGCATTGAGATGAGT
66 TGGGACATGGCATCGGCATTGAGACGAGT
* * * *
105811530 GCTAGTGCAAGACATG-CATGGGACATGCATCAGCCACATTATGAGAGCTAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTC-TGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGT
** * **
105811594 CTGGGATGTTGCATCAACATTGAGACGAGT
65 CTGGGACATGGCATCGGCATTGAGACGAGT
* * * *
105811624 GCTAGTGTAAGACATGTCTGGGACATACATCGACCT-CGA-GATGTA-AGCCAGTGTAATA-CAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG-GCTAC-ATTATG-AGAGCCAGTGTAAGACCAT
* * * *
105811685 GTTTGGGACAT-GCATCGGC-TACGAGATGTGT
63 GTCTGGGACATGGCATCGGCAT-TGAGACGAGT
* * * **
105811716 -C-AGTGTAAGGCTATGTCCGGGACATGGCATCGGCATAGA-TATGCTAGAGCTTGTGTAAGACC
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-TACATTATG--AGAGCCAGTGTAAGACC
105811778 ATGTCTGGGACATGGCATC
61 ATGTCTGGGACATGGCATC
105811797 AGTACCTTAC
Statistics
Matches: 304, Mismatches: 43, Indels: 26
0.82 0.12 0.07
Matches are distributed among these distances:
90 9 0.03
91 15 0.05
92 23 0.08
93 13 0.04
94 222 0.73
95 17 0.06
96 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGACGAGT
Found at i:105817722 original size:8 final size:8
Alignment explanation
Indices: 105817703--105817760 Score: 55
Period size: 8 Copynumber: 7.2 Consensus size: 8
105817693 TTGTGGAAGG
*
105817703 TATGTATA
1 TATGTGTA
*
105817711 TATGTGTT
1 TATGTGTA
105817719 TATGTGTA
1 TATGTGTA
* *
105817727 TAAGTATA
1 TATGTGTA
105817735 TATGTGT-
1 TATGTGTA
105817742 TCATGTGTA
1 T-ATGTGTA
*
105817751 TATGTATA
1 TATGTGTA
105817759 TA
1 TA
105817761 AAGGTGTATG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
7 1 0.03
8 38 0.95
9 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (8 bp):
TATGTGTA
Found at i:105817738 original size:24 final size:24
Alignment explanation
Indices: 105817706--105817760 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
105817696 TGGAAGGTAT
*
105817706 GTATATATGTGTTTATGTGTATAA
1 GTATATATGTGTTCATGTGTATAA
*
105817730 GTATATATGTGTTCATGTGTATAT
1 GTATATATGTGTTCATGTGTATAA
105817754 GTATATA
1 GTATATA
105817761 AAGGTGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (24 bp):
GTATATATGTGTTCATGTGTATAA
Found at i:105821154 original size:14 final size:14
Alignment explanation
Indices: 105821135--105821163 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
105821125 CTACTCTCAA
105821135 GTGTGATTTAGATG
1 GTGTGATTTAGATG
105821149 GTGTGATTTAGATG
1 GTGTGATTTAGATG
105821163 G
1 G
105821164 ATTGTGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (14 bp):
GTGTGATTTAGATG
Found at i:105822085 original size:5 final size:5
Alignment explanation
Indices: 105822075--105822106 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
105822065 TATATTGTGA
105822075 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
105822107 GAACACGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:105833865 original size:12 final size:12
Alignment explanation
Indices: 105833836--105833875 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
105833826 ATTTGCCTAC
105833836 TTATTT-TTTTA
1 TTATTTATTTTA
*
105833847 TCA-TTATTTTA
1 TTATTTATTTTA
105833858 TTATTTATTTTA
1 TTATTTATTTTA
105833870 TTATTT
1 TTATTT
105833876 TCGACAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 2 0.08
11 9 0.36
12 14 0.56
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (12 bp):
TTATTTATTTTA
Found at i:105833983 original size:3 final size:3
Alignment explanation
Indices: 105833977--105834048 Score: 51
Period size: 3 Copynumber: 24.0 Consensus size: 3
105833967 TAGTAGTATG
* **
105833977 ATT ATT ATT GTT ATT ATT ATT ACC ATT GATT AATT -TT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT -ATT ATT ATT ATT ATT
* *
105834023 ATC ATT A-T AGTT A-T ATT ATT AAT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT
105834049 GTACTATCAT
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
2 6 0.11
3 39 0.74
4 8 0.15
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:105855590 original size:12 final size:12
Alignment explanation
Indices: 105855560--105855592 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
105855550 TATATTTTTT
105855560 AAAATT-ATATA
1 AAAATTAATATA
105855571 AAAA-TAATATA
1 AAAATTAATATA
105855582 AAAATTAATAT
1 AAAATTAATAT
105855593 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:105856234 original size:46 final size:46
Alignment explanation
Indices: 105856181--105856274 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
105856171 TGATACGATC
105856181 ATTGTTGTCAATATAGGACATAAAAGAACATATATGATCAAAACCT
1 ATTGTTGTCAATATAGGACATAAAAGAACATATATGATCAAAACCT
*
105856227 ATTGTTGTCAATATAGGACATAAAAGAATATATATGATCAAAACCT
1 ATTGTTGTCAATATAGGACATAAAAGAACATATATGATCAAAACCT
105856273 AT
1 AT
105856275 ATTGATATTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.30
Consensus pattern (46 bp):
ATTGTTGTCAATATAGGACATAAAAGAACATATATGATCAAAACCT
Done.