Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 32 of 349
Found at i:8894167 original size:23 final size:22
Alignment explanation
Indices: 8894141--8894221 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 22
8894131 ACAATAATAC
* *
8894141 AATAATAATAAAGTAGTAATAAA
1 AATAATAATAAA-TAATAGTAAA
*
8894164 AATAAAAATAACAATAATAGTAAA
1 AATAATAAT-A-AATAATAGTAAA
8894188 AAT-ATAATAAATAATAGTAAA
1 AATAATAATAAATAATAGTAAA
*
8894209 AGAAAATAATAAA
1 A-ATAATAATAAA
8894222 ATTAACTAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
21 13 0.27
22 2 0.04
23 20 0.41
24 12 0.24
25 2 0.04
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.23
Consensus pattern (22 bp):
AATAATAATAAATAATAGTAAA
Found at i:8894220 original size:46 final size:44
Alignment explanation
Indices: 8894121--8894220 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 44
8894111 TAATGATAAG
* * *
8894121 GAAAATAATAACAATAATACAATAATAATAAAGTAGTAATAAAA
1 GAAAATAATAACAATAATAAAAAAATAATAAAGTAATAATAAAA
*
8894165 -ATAAA-AATAACAATAATAGTAAAAATATAATAAA-TAATAGTAAAA
1 GA-AAATAATAACAATAATA--AAAAA-ATAATAAAGTAATAATAAAA
8894210 GAAAATAATAA
1 GAAAATAATAA
8894221 AATTAACTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
43 14 0.30
44 3 0.07
45 15 0.33
46 14 0.30
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (44 bp):
GAAAATAATAACAATAATAAAAAAATAATAAAGTAATAATAAAA
Found at i:8895733 original size:78 final size:78
Alignment explanation
Indices: 8895598--8895812 Score: 351
Period size: 78 Copynumber: 2.8 Consensus size: 78
8895588 ACATACTAAT
* * * *
8895598 TTGGCACCCAGTGCCTCATCGAA-TAATTCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
1 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
8895662 TAACCGGAGTAAA
66 TAACCGGAGTAAA
* *
8895675 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTATCTCATTGGCT
1 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
*
8895740 TAATCGGAGTAAA
66 TAACCGGAGTAAA
*
8895753 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAATTTGACACCTAGTGTCTCAT
1 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCAT
8895813 CGGCTCGAAG
Statistics
Matches: 128, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
77 21 0.16
78 107 0.84
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (78 bp):
TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
TAACCGGAGTAAA
Found at i:8895734 original size:41 final size:40
Alignment explanation
Indices: 8895612--8895814 Score: 132
Period size: 41 Copynumber: 5.2 Consensus size: 40
8895602 CACCCAGTGC
* * *
8895612 CTCATCGAA-TAATTCGAAGTAATAAGTTGACACCTAGTGT
1 CTCATCGAATTTATCCGAAGTAATAA-TTGACACCTAGTAT
* ** * * ** * *
8895652 CTCAT-TAGCTTAACCGGAGT-A-AATTGGTACCCAGTAC
1 CTCATCGAATTTATCCGAAGTAATAATTGACACCTAGTAT
8895689 CTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTAT
1 CTCATCGAATTTATCCGAAGTAATAA-TTGACACCTAGTAT
* ** * * ** * *
8895730 CTCATTGGCTTAAT-CGGAGT-A-AATTGGTACCCAGTAC
1 CTCATCGAATTTATCCGAAGTAATAATTGACACCTAGTAT
*
8895767 CTCATCGAATTTATCCGAAGTAATAATTTGACACCTAGTGT
1 CTCATCGAATTTATCCGAAGTAATAA-TTGACACCTAGTAT
8895808 CTCATCG
1 CTCATCG
8895815 GCTCGAAGTC
Statistics
Matches: 115, Mismatches: 39, Indels: 17
0.67 0.23 0.10
Matches are distributed among these distances:
37 34 0.30
38 19 0.17
39 5 0.04
40 21 0.18
41 36 0.31
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (40 bp):
CTCATCGAATTTATCCGAAGTAATAATTGACACCTAGTAT
Found at i:8895771 original size:37 final size:37
Alignment explanation
Indices: 8895652--8895771 Score: 105
Period size: 37 Copynumber: 3.1 Consensus size: 37
8895642 CACCTAGTGT
* *
8895652 CTCATTAGCTTAACCGGAGTAAATTGGTACCCAGTAC
1 CTCATTGGCTTAATCGGAGTAAATTGGTACCCAGTAC
* ** * * ** * *
8895689 CTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTAT
1 CTCATTGGCTTAAT-CGGAGT-A-AA-TTGGTACCCAGTAC
8895730 CTCATTGGCTTAATCGGAGTAAATTGGTACCCAGTAC
1 CTCATTGGCTTAATCGGAGTAAATTGGTACCCAGTAC
8895767 CTCAT
1 CTCAT
8895772 CGAATTTATC
Statistics
Matches: 59, Mismatches: 20, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
37 23 0.39
38 7 0.12
39 2 0.03
40 7 0.12
41 20 0.34
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (37 bp):
CTCATTGGCTTAATCGGAGTAAATTGGTACCCAGTAC
Found at i:8897695 original size:23 final size:26
Alignment explanation
Indices: 8897645--8897704 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 26
8897635 AATGAAAAAT
8897645 AAAGAAAGAAAAGTTAAAAGAACAT-A
1 AAAGAAA-AAAAGTTAAAAGAACATAA
* *
8897671 AAAGAAAAAAA-TTAAATG-ACTTAA
1 AAAGAAAAAAAGTTAAAAGAACATAA
8897695 AAAGAAAAAA
1 AAAGAAAAAA
8897705 TATGGGTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 3 0.10
24 17 0.55
25 4 0.13
26 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.12, T:0.13
Consensus pattern (26 bp):
AAAGAAAAAAAGTTAAAAGAACATAA
Found at i:8899387 original size:16 final size:17
Alignment explanation
Indices: 8899353--8899393 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
8899343 CAACTCAAGC
8899353 AAAAA-AAAATACTTAA
1 AAAAACAAAATACTTAA
*
8899369 AAAAACAAAATAGTTAA
1 AAAAACAAAATACTTAA
*
8899386 AATAACAA
1 AAAAACAA
8899394 TGTGCGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAAACAAAATACTTAA
Found at i:8905093 original size:21 final size:21
Alignment explanation
Indices: 8905067--8905113 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
8905057 CGTACTCTCT
* *
8905067 GTAAAATATTTTAAAAGATTG
1 GTAAAATATTTTAAAAAATTA
8905088 GTAAAATATTTTAAAAAATTA
1 GTAAAATATTTTAAAAAATTA
8905109 GTAAA
1 GTAAA
8905114 TAACAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (21 bp):
GTAAAATATTTTAAAAAATTA
Found at i:8908292 original size:11 final size:9
Alignment explanation
Indices: 8908241--8908301 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
8908231 TACGAATATG
*
8908241 TAAAAAATA
1 TAAAAAATT
8908250 TAAAAATCATT
1 TAAAAA--ATT
*
8908261 AAAAAAATTT
1 TAAAAAA-TT
8908271 TAAAAAATT
1 TAAAAAATT
8908280 TAAAAAAGGTT
1 TAAAAAA--TT
8908291 TAAAAATATT
1 TAAAAA-ATT
8908301 T
1 T
8908302 TTTTTATAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
9 16 0.37
10 11 0.26
11 15 0.35
12 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (9 bp):
TAAAAAATT
Found at i:8909984 original size:16 final size:15
Alignment explanation
Indices: 8909961--8909992 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
8909951 TCCCCTCCTC
8909961 TTTCTTTCTTTTTTT
1 TTTCTTTCTTTTTTT
8909976 TTTCATTTCTTTTTTT
1 TTTC-TTTCTTTTTTT
8909992 T
1 T
8909993 CTTTTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTCTTTCTTTTTTT
Found at i:8909984 original size:20 final size:20
Alignment explanation
Indices: 8909961--8909999 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8909951 TCCCCTCCTC
8909961 TTTCTTTCTTTTT-TTTTTCA
1 TTTCTTT-TTTTTCTTTTTCA
8909981 TTTCTTTTTTTTCTTTTTC
1 TTTCTTTTTTTTCTTTTTC
8910000 TAAGCATGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTCTTTTTTTTCTTTTTCA
Found at i:8910696 original size:2 final size:2
Alignment explanation
Indices: 8910649--8910677 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8910639 CAATAACAGT
8910649 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8910678 TAATACTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8912063 original size:19 final size:19
Alignment explanation
Indices: 8912039--8912076 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8912029 CAAATCATTA
8912039 GAACAATAATATTTTTCAT
1 GAACAATAATATTTTTCAT
8912058 GAACAATAATATTTTTCAT
1 GAACAATAATATTTTTCAT
8912077 TCATATCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (19 bp):
GAACAATAATATTTTTCAT
Found at i:8912265 original size:18 final size:18
Alignment explanation
Indices: 8912241--8912392 Score: 171
Period size: 18 Copynumber: 8.4 Consensus size: 18
8912231 TATCAATATC
8912241 ATTCAGTAAC-GATCAATT
1 ATTCAGTAACAG-TCAATT
* *
8912259 GTTCAGTAACAGTCAGTT
1 ATTCAGTAACAGTCAATT
* *
8912277 ATTTAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATT
8912295 ATTCAGTAACAGTCAATT
1 ATTCAGTAACAGTCAATT
* * *
8912313 ATTCAGTAATAATCAGTT
1 ATTCAGTAACAGTCAATT
* *
8912331 ATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCAATT
*
8912349 ATTCAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATT
* * *
8912367 TTTCAGTAGCAGTCAGTT
1 ATTCAGTAACAGTCAATT
8912385 ATTCAGTA
1 ATTCAGTA
8912393 CCTTTATTTA
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
18 115 0.99
19 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (18 bp):
ATTCAGTAACAGTCAATT
Found at i:8912285 original size:36 final size:36
Alignment explanation
Indices: 8912241--8912392 Score: 189
Period size: 36 Copynumber: 4.2 Consensus size: 36
8912231 TATCAATATC
* *
8912241 ATTCAGTAAC-GATCAATTGTTCAGTAACAGTCAGTT
1 ATTCAGTAACAG-TCATTTATTCAGTAACAGTCAGTT
* *
8912277 ATTTAGTAACAGTCATTTATTCAGTAACAGTCAATT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
* * * * *
8912313 ATTCAGTAATAATCAGTTATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
* *
8912349 ATTCAGTAACAGTCATTTTTTCAGTAGCAGTCAGTT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
8912385 ATTCAGTA
1 ATTCAGTA
8912393 CCTTTATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
36 97 0.99
37 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (36 bp):
ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
Found at i:8912318 original size:54 final size:54
Alignment explanation
Indices: 8912241--8912392 Score: 216
Period size: 54 Copynumber: 2.8 Consensus size: 54
8912231 TATCAATATC
* * *
8912241 ATTCAGTAAC-GATCAATTGTTCAGTAACAGTCAGTTATTTAGTAACAGTCATTT
1 ATTCAGTAACAG-TCAATTATTCAGTAACAGTCAGTTATTCAGTAACAATCATTT
* *
8912295 ATTCAGTAACAGTCAATTATTCAGTAATAATCAGTTATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTCAGTAACAATCATTT
* * *
8912349 ATTCAGTAACAGTCATTTTTTCAGTAGCAGTCAGTTATTCAGTA
1 ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTCAGTA
8912393 CCTTTATTTA
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 86 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (54 bp):
ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTCAGTAACAATCATTT
Found at i:8912637 original size:44 final size:44
Alignment explanation
Indices: 8912546--8912637 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
8912536 CCGAAGTAAC
*
8912546 AGTAATAGTACGACACACGAAGTGCCTCATCGACACAAAGTCGA
1 AGTAATAGTACGACACACGAAGTGCCTCATCGACACAAAGTCAA
** * **
8912590 AGTAATAGTACGACACTA-TTAGTGCCTCATCGACCCATGGTCAA
1 AGTAATAGTACGACAC-ACGAAGTGCCTCATCGACACAAAGTCAA
8912634 AGTA
1 AGTA
8912638 TCCCTGTACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (44 bp):
AGTAATAGTACGACACACGAAGTGCCTCATCGACACAAAGTCAA
Found at i:8913526 original size:4 final size:4
Alignment explanation
Indices: 8913517--8913555 Score: 51
Period size: 4 Copynumber: 9.2 Consensus size: 4
8913507 TTGCCAACTT
*
8913517 TTAA TTAA TTAA TTAA TTAA TTAA CTTTAT TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA --TTAA TTAA TTAA T
8913556 ATAAAATAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 28 0.90
6 3 0.10
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (4 bp):
TTAA
Found at i:8917933 original size:55 final size:53
Alignment explanation
Indices: 8917846--8918079 Score: 221
Period size: 55 Copynumber: 4.4 Consensus size: 53
8917836 ATTAGGGTTT
* *
8917846 AAGGATACCATGTAAGACCATGGCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
8917901 AAGGAAATCATGTAAGACCCTGTCAAGACATGGCATTGATAAGTTACTATGAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTA--AGGC
* * * *
8917956 AAAGG-TCCCATGTAAGACCAT-TCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGT-CAAGACATGGAATTGGTAAGTTTC-TAAGGC
* *
8918009 AAGGATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTAAGGC
*
8918058 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
8918080 ACTAGTCATG
Statistics
Matches: 148, Mismatches: 23, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
49 21 0.14
52 6 0.04
53 40 0.27
54 14 0.09
55 63 0.43
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:8918052 original size:108 final size:110
Alignment explanation
Indices: 8917853--8918053 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
8917843 TTTAAGGATA
* *
8917853 CCATGTAAGACCATGGCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* * *
8917918 CCCTGTCAAGACATGGCATTGATAAGTTACTATGAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATGAGGCAAAGGTC
* * * *
8917963 CCATGTAAGACCATTCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
8918025 ACCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
8918054 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATGAGGCAAAGGTC
Found at i:8925223 original size:17 final size:18
Alignment explanation
Indices: 8925191--8925224 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8925181 TATGGTTTGT
*
8925191 CCGTGTGGGCCTACACGC
1 CCGTGTGGGCCCACACGC
8925209 CCGTGT-GGCCCACACG
1 CCGTGTGGGCCCACACG
8925225 GCCTAAATCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.41, G:0.32, T:0.15
Consensus pattern (18 bp):
CCGTGTGGGCCCACACGC
Found at i:8931548 original size:28 final size:28
Alignment explanation
Indices: 8931508--8931586 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
8931498 GCAATCAAAT
* *
8931508 ATGGCA-TTCAGTGTACGAAATATTTAGA
1 ATGGCACTT-AGTGTGCGAAATATTGAGA
*
8931536 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
**
8931564 ATGAAACTTAGTGTGCGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
8931587 CAAATAATTC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
28 42 0.95
29 2 0.05
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:8942672 original size:13 final size:13
Alignment explanation
Indices: 8942654--8942680 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8942644 TCAGTAATCA
8942654 CACACGGGCGTGT
1 CACACGGGCGTGT
8942667 CACACGGGCGTGT
1 CACACGGGCGTGT
8942680 C
1 C
8942681 CTTGTCGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:8947779 original size:13 final size:13
Alignment explanation
Indices: 8947761--8947795 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
8947751 GGACACACGC
8947761 CCGTGTGGCCAGG
1 CCGTGTGGCCAGG
8947774 CCGTGTGGCCAGG
1 CCGTGTGGCCAGG
8947787 CCGTGTGGC
1 CCGTGTGGC
8947796 TCACACGGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.06, C:0.31, G:0.46, T:0.17
Consensus pattern (13 bp):
CCGTGTGGCCAGG
Found at i:8948911 original size:8 final size:9
Alignment explanation
Indices: 8948890--8948921 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
8948880 TACAAAAGTG
8948890 ATGATAACA
1 ATGATAACA
8948899 ATGATAA-A
1 ATGATAACA
8948907 ATGATAACA
1 ATGATAACA
8948916 ATGATA
1 ATGATA
8948922 TTAGTAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (9 bp):
ATGATAACA
Found at i:8949021 original size:23 final size:24
Alignment explanation
Indices: 8948995--8949044 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
8948985 TAAAAAAGGA
8948995 AATAATAATATGGTAA-AAAAAAT
1 AATAATAATATGGTAATAAAAAAT
* * *
8949018 AATAGTAATATGTTAATGAAAAAT
1 AATAATAATATGGTAATAAAAAAT
8949042 AAT
1 AAT
8949045 GGTAATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (24 bp):
AATAATAATATGGTAATAAAAAAT
Found at i:8949044 original size:24 final size:23
Alignment explanation
Indices: 8948995--8949051 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
8948985 TAAAAAAGGA
*
8948995 AATAATAATATGGTAAAAAAAAT
1 AATAGTAATATGGTAAAAAAAAT
* *
8949018 AATAGTAATATGTTAATGAAAAAT
1 AATAGTAATATGGTAA-AAAAAAT
*
8949042 AATGGTAATA
1 AATAGTAATA
8949052 ATAATAATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (23 bp):
AATAGTAATATGGTAAAAAAAAT
Found at i:8949088 original size:22 final size:22
Alignment explanation
Indices: 8949039--8949095 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
8949029 GTTAATGAAA
*
8949039 AATAATGGTAATAATAATAATG
1 AATAATGGTAATAAAAATAATG
*
8949061 ATTAATGGTAATAAAAATATAT-
1 AATAATGGTAATAAAAATA-ATG
*
8949083 AATAATAGTAATA
1 AATAATGGTAATA
8949096 CGAAGTTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (22 bp):
AATAATGGTAATAAAAATAATG
Found at i:8949327 original size:15 final size:16
Alignment explanation
Indices: 8949274--8949327 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
8949264 TATAATGATA
*
8949274 ATATTAATAGAAATAG
1 ATATAAATAGAAATAG
8949290 ATATAAA-AGAAATAG
1 ATATAAATAGAAATAG
*
8949305 CA-AT-AATAGTAATA-
1 -ATATAAATAGAAATAG
8949319 ATATAAATA
1 ATATAAATA
8949328 ATAATATATG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
13 1 0.03
14 4 0.12
15 20 0.62
16 7 0.22
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (16 bp):
ATATAAATAGAAATAG
Found at i:8949547 original size:131 final size:139
Alignment explanation
Indices: 8949373--8949621 Score: 320
Period size: 131 Copynumber: 1.8 Consensus size: 139
8949363 ATATATGTAC
* *
8949373 ATAATAATAATATTAAAGTAAAGTAAATAAAAATAATACTATATATAAACATATAT-ATATACAT
1 ATAATAATAATATTAAAATAAAGTAAATAAAAATAATAATATATATAAACATATATAATATACAT
* * *
8949437 ATA-GA-ATATAAATACAC-ACTA-AT-GT-ATAATAATAATAGTAATAATATTGAAATACAAAA
66 ATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATATTGAAATACAAAA
8949496 AAAGTAAAT
131 AAAGTAAAT
* *
8949505 ATAATAA-AATATTAAAA-ATAAGT-AATGAAGAATAATAATATATATAAATATATATACATATA
1 ATAATAATAATATTAAAATA-AAGTAAAT-AAAAATAATAATATATATAAACATATATA-ATATA
* *
8949567 CCTATACGATAAAGAAATACACTATTATATGGTAATAATAATAATAATAATAATA
63 CATATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATA
8949622 GAAGATAAAA
Statistics
Matches: 98, Mismatches: 9, Indels: 13
0.82 0.08 0.11
Matches are distributed among these distances:
130 4 0.04
131 38 0.39
132 7 0.07
133 10 0.10
134 2 0.02
135 10 0.10
136 3 0.03
137 2 0.02
138 2 0.02
139 20 0.20
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (139 bp):
ATAATAATAATATTAAAATAAAGTAAATAAAAATAATAATATATATAAACATATATAATATACAT
ATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATATTGAAATACAAAA
AAAGTAAAT
Found at i:8949607 original size:3 final size:3
Alignment explanation
Indices: 8949599--8949726 Score: 68
Period size: 3 Copynumber: 42.7 Consensus size: 3
8949589 TATTATATGG
8949599 TAA TAA TAA TAA TAA TAA TAA TAGA -AGA TAA -AA -AGA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TA-A TAA TAA TAA
* * * ** * * *
8949644 T-A TAG TAG TAG TAA TAA CCA TGAA -AG TAA AAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
** * *
8949688 TAA TGG TAA TAA TGA TAA TTAA TAA TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TA
8949727 TAAATGATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
2 6 0.06
3 84 0.87
4 7 0.07
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:8949615 original size:133 final size:132
Alignment explanation
Indices: 8949373--8949615 Score: 289
Period size: 133 Copynumber: 1.8 Consensus size: 132
8949363 ATATATGTAC
* *
8949373 ATAATAATAATATTAAAGTAAAGTAAATAAAAATAATACTATATATAAACATATATATATACATA
1 ATAATAATAATATTAAAATAAAGTAAATAAAAATAATAATATATATAAACATATATATATACATA
* * *
8949438 TAGAATATAAATACACACTAATGTATAATAATAATAGTAATAATATTGAAATACAAAAAAAGTAA
66 TAGAATATAAAAACACACTAATATATAATAATAATAATAATAATATTGAAATACAAAAAAAGTAA
8949503 AT
131 AT
* *
8949505 ATAATAA-AATATTAAAA-ATAAGT-AATGAAGAATAATAATATATATAAATATATATACATATA
1 ATAATAATAATATTAAAATA-AAGTAAAT-AAAAATAATAATATATATAAACATATAT--ATATA
* * * **
8949567 CCTATACG-ATA-AAGAAATACACTATTATATGGTAATAATAATAATAATA
62 CATATA-GAATATAA-AAACACACTAATATATAATAATAATAATAATAATA
8949616 ATAATAGAAG
Statistics
Matches: 93, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
130 4 0.04
131 38 0.41
132 9 0.10
133 41 0.44
134 1 0.01
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (132 bp):
ATAATAATAATATTAAAATAAAGTAAATAAAAATAATAATATATATAAACATATATATATACATA
TAGAATATAAAAACACACTAATATATAATAATAATAATAATAATATTGAAATACAAAAAAAGTAA
AT
Found at i:8949754 original size:18 final size:18
Alignment explanation
Indices: 8949711--8949759 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
8949701 GATAATTAAT
8949711 AATAATAACAATAATATA
1 AATAATAACAATAATATA
* *
8949729 AATGATAAC-ATACATATG
1 AATAATAACAATA-ATATA
*
8949747 AATAATAATAATA
1 AATAATAACAATA
8949760 GCAATAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 19 0.76
19 3 0.12
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (18 bp):
AATAATAACAATAATATA
Found at i:8951938 original size:21 final size:20
Alignment explanation
Indices: 8951912--8951968 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
8951902 TCGAAGACTG
*
8951912 AACAGAAGCACATAAGTGCTA
1 AACAGAAGC-CATAAGGGCTA
* *
8951933 AACAGAAATCCATAAGGGTTA
1 AACAG-AAGCCATAAGGGCTA
8951954 AACAGAAGCTCATAA
1 AACAGAAGC-CATAA
8951969 AAGAGCTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.16
Consensus pattern (20 bp):
AACAGAAGCCATAAGGGCTA
Found at i:8953697 original size:27 final size:27
Alignment explanation
Indices: 8953666--8953756 Score: 155
Period size: 27 Copynumber: 3.4 Consensus size: 27
8953656 AATCATCGTG
* *
8953666 GTTGGATGAGATTAAAAGTTAGCAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
*
8953693 GTTGGAAGAGATTAAAAGTAAGAAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
8953720 GTTGGATGAGATTAAAAGTAAGAAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
8953747 GTTGGATGAG
1 GTTGGATGAG
8953757 TCTTTGATTA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.41, C:0.01, G:0.32, T:0.26
Consensus pattern (27 bp):
GTTGGATGAGATTAAAAGTAAGAAGAT
Found at i:8966212 original size:37 final size:38
Alignment explanation
Indices: 8966160--8966250 Score: 121
Period size: 37 Copynumber: 2.4 Consensus size: 38
8966150 ACCCACTACC
* * *
8966160 GTGGTGTGTAAGGTGGAGGGGCCTATAATAGCCC-TTT
1 GTGGTGTGTAGGGTGGAGGGGCCTACAATAGCCCAATT
* *
8966197 GTGGTGTGTAGGGTGGATGGGCCTACCATAGCCCAATT
1 GTGGTGTGTAGGGTGGAGGGGCCTACAATAGCCCAATT
*
8966235 GTGGTGTGCAGGGTGG
1 GTGGTGTGTAGGGTGG
8966251 TTGGAGTAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 30 0.64
38 17 0.36
ACGTcount: A:0.16, C:0.14, G:0.42, T:0.27
Consensus pattern (38 bp):
GTGGTGTGTAGGGTGGAGGGGCCTACAATAGCCCAATT
Found at i:8969208 original size:6 final size:6
Alignment explanation
Indices: 8969167--8969191 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8969157 AAAATTTAGT
8969167 AAATAA AAATAA AAATAA AAATAA A
1 AAATAA AAATAA AAATAA AAATAA A
8969192 TTGCAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:8971105 original size:37 final size:38
Alignment explanation
Indices: 8971056--8971143 Score: 115
Period size: 37 Copynumber: 2.3 Consensus size: 38
8971046 CACTACTGTT
* *
8971056 GTGTGTAGGGTGGACGAGCCTATAATAGCCC-TTTGTG
1 GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
* * * *
8971093 GTGTGTAAGGTGGATGGGCCTACCATAGCCCAATTGTG
1 GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
8971131 GTGTGTAGGGTGG
1 GTGTGTAGGGTGG
8971144 TTGGAGTGGT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 26 0.60
38 17 0.40
ACGTcount: A:0.18, C:0.15, G:0.39, T:0.28
Consensus pattern (38 bp):
GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
Found at i:8972041 original size:8 final size:8
Alignment explanation
Indices: 8972028--8972057 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
8972018 AGAAAGATGA
8972028 AGAAGTGT
1 AGAAGTGT
8972036 AGAAGTGT
1 AGAAGTGT
8972044 AGAAGTGT
1 AGAAGTGT
8972052 AGAAGT
1 AGAAGT
8972058 AGGGCTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (8 bp):
AGAAGTGT
Found at i:8980387 original size:13 final size:13
Alignment explanation
Indices: 8980361--8980443 Score: 67
Period size: 13 Copynumber: 6.2 Consensus size: 13
8980351 TTGCGTACAA
*
8980361 GGTTCGCACATAT
1 GGTTCACACATAT
*
8980374 GGTTCACACCTAT
1 GGTTCACACATAT
*
8980387 GTGTTTCGCACATAT
1 G-G-TTCACACATAT
* *
8980402 GGTTCACACTTAG
1 GGTTCACACATAT
*
8980415 GGTTCACATATAT
1 GGTTCACACATAT
* *
8980428 GGGTTCGCACCTAT
1 -GGTTCACACATAT
8980442 GG
1 GG
8980444 GTTTGCACAT
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
13 32 0.59
14 12 0.22
15 10 0.19
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (13 bp):
GGTTCACACATAT
Found at i:8980395 original size:28 final size:27
Alignment explanation
Indices: 8980363--8980453 Score: 96
Period size: 28 Copynumber: 3.3 Consensus size: 27
8980353 GCGTACAAGG
8980363 TTCGCACATATGGTTCACACCTATGTGT
1 TTCGCACATATGGTTCACACCTATG-GT
* *
8980391 TTCGCACATATGGTTCACACTTA-GGG
1 TTCGCACATATGGTTCACACCTATGGT
* * *
8980417 TTCACATATATGGGTTCGCACCTATGGGT
1 TTCGCACATAT-GGTTCACACCTAT-GGT
8980446 TT-GCACAT
1 TTCGCACAT
8980454 TCAAGGGGGT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
26 10 0.20
27 11 0.22
28 26 0.51
29 4 0.08
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (27 bp):
TTCGCACATATGGTTCACACCTATGGT
Found at i:8980406 original size:41 final size:41
Alignment explanation
Indices: 8980361--8980453 Score: 98
Period size: 41 Copynumber: 2.3 Consensus size: 41
8980351 TTGCGTACAA
* * *
8980361 GGTTCGCACATATGGTTCACACCTATGTGTTTCGCACATAT-
1 GGTTCGCACATAGGGTTCACACATATG-GGTTCGCACATATG
* * * *
8980402 GGTTCACACTTAGGGTTCACATATATGGGTTCGCACCTATG
1 GGTTCGCACATAGGGTTCACACATATGGGTTCGCACATATG
*
8980443 GGTTTGCACAT
1 GGTTCGCACAT
8980454 TCAAGGGGGT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
40 11 0.27
41 30 0.73
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (41 bp):
GGTTCGCACATAGGGTTCACACATATGGGTTCGCACATATG
Found at i:8980486 original size:23 final size:23
Alignment explanation
Indices: 8980460--8980627 Score: 80
Period size: 23 Copynumber: 7.2 Consensus size: 23
8980450 ACATTCAAGG
8980460 GGGTTCGCATAAATACATATATA
1 GGGTTCGCATAAATACATATATA
* * * *
8980483 GGGTTCACATAGTACACATAAATA
1 GGGTTCGCATA-AATACATATATA
* * *
8980507 GGGTTCACGT-AATAACATGT-TCA
1 GGGTTCGCATAAAT-ACATATAT-A
* *
8980530 AGGTTCGTATATACACTA-ATATATA
1 GGGTTCGCATA-A-A-TACATATATA
* *
8980555 GGGTTCGCATAAATA-GTCATGTA
1 GGGTTCGCATAAATACAT-ATATA
* * *
8980578 GGGTTCGCATGAATA-ACACATA
1 GGGTTCGCATAAATACATATATA
8980600 GGGTTCGCATAACAATACAT-T-TA
1 GGGTTCGCAT-A-AATACATATATA
8980623 GGGTT
1 GGGTT
8980628 GAAATGTATA
Statistics
Matches: 107, Mismatches: 26, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
22 18 0.17
23 47 0.44
24 23 0.21
25 15 0.14
26 3 0.03
27 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (23 bp):
GGGTTCGCATAAATACATATATA
Found at i:8980625 original size:45 final size:45
Alignment explanation
Indices: 8980552--8980653 Score: 111
Period size: 45 Copynumber: 2.2 Consensus size: 45
8980542 ACACTAATAT
*
8980552 ATAGGGTTCGCATAAATAGTCATGTAGGGTTCG-CATGAAT-AACAC
1 ATAGGGTTCGCATAAATAG-CATGTAGGGTT-GAAATGAATAAACAC
* *
8980597 ATAGGGTTCGCATAACAATA-CATTTAGGGTTGAAATGTATAAACAC
1 ATAGGGTTCGCAT-A-AATAGCATGTAGGGTTGAAATGAATAAACAC
*
8980643 ATAGAGTTCGC
1 ATAGGGTTCGC
8980654 TTGATATTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
44 1 0.02
45 28 0.57
46 16 0.33
47 4 0.08
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (45 bp):
ATAGGGTTCGCATAAATAGCATGTAGGGTTGAAATGAATAAACAC
Found at i:8983424 original size:25 final size:25
Alignment explanation
Indices: 8983395--8983449 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
8983385 ATATGATATC
8983395 AATGTATAATGAATTTGGACAAATT
1 AATGTATAATGAATTTGGACAAATT
8983420 AATGTATAATGAATTTGGACAAATT
1 AATGTATAATGAATTTGGACAAATT
*
8983445 GATGT
1 AATGT
8983450 CTATGTATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (25 bp):
AATGTATAATGAATTTGGACAAATT
Found at i:8984135 original size:13 final size:13
Alignment explanation
Indices: 8984117--8984154 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8984107 TTTTACTCTT
8984117 GATTTTA-TAAAAA
1 GATTTTACT-AAAA
8984130 GATTTTACTAAAA
1 GATTTTACTAAAA
*
8984143 GATTTTGCTAAA
1 GATTTTACTAAA
8984155 TTTATGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 22 0.96
14 1 0.04
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (13 bp):
GATTTTACTAAAA
Found at i:9002655 original size:16 final size:16
Alignment explanation
Indices: 9002619--9002649 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9002609 GTCCATTTAA
9002619 TTTTTAATTTATTTTC
1 TTTTTAATTTATTTTC
*
9002635 TTTTTAGTTTATTTT
1 TTTTTAATTTATTTT
9002650 TATTTTTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTTAATTTATTTTC
Found at i:9003799 original size:41 final size:40
Alignment explanation
Indices: 9003711--9003804 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 40
9003701 AAAAATAAGC
9003711 ATTAGCGGCGCTTATCAGGAAACGCCGCTATATGTTGACA
1 ATTAGCGGCGCTTATCAGGAAACGCCGCTATATGTTGACA
* *
9003751 ATGAGCGGCGCTTAT-ATGAGAAACGCCGCTATA-GTTTGACC
1 ATTAGCGGCGCTTATCA-G-GAAACGCCGCTATATG-TTGACA
*
9003792 GTTAGCGGCGCTT
1 ATTAGCGGCGCTT
9003805 TAGGTAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.02
40 16 0.34
41 30 0.64
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATTAGCGGCGCTTATCAGGAAACGCCGCTATATGTTGACA
Found at i:9004195 original size:14 final size:14
Alignment explanation
Indices: 9004142--9004186 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
9004132 TTAATTATCA
*
9004142 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
9004156 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
*
9004170 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
9004184 TTA
1 TTA
9004187 AGGTGTAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:9004333 original size:22 final size:25
Alignment explanation
Indices: 9004271--9004319 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
9004261 TAAAATTTAA
*
9004271 GGGTTAGGGGTTAATGATTAGGGTC
1 GGGTTAGGGGTTAAGGATTAGGGTC
9004296 GGGTTAGGGGTTAAGGATTAGGGT
1 GGGTTAGGGGTTAAGGATTAGGGT
9004320 GTGTAGGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.47, T:0.31
Consensus pattern (25 bp):
GGGTTAGGGGTTAAGGATTAGGGTC
Found at i:9005440 original size:158 final size:158
Alignment explanation
Indices: 9005254--9005591 Score: 468
Period size: 159 Copynumber: 2.1 Consensus size: 158
9005244 TTAGTGCCGT
* *
9005254 TTTTTTTAAAAAACGCCGCAAAAAATAGTA-TAGTTTAAAGAAAACGGCGTCGTTTTAGT-TGGA
1 TTTTTTTAAAAAACGCCGCAAAAAATAGTATTAGTTTAAAGAAAACGGCGCCGTTTTAGTATAG-
* * *
9005317 TAGGGGATTAGTGGCG-TTTTGAAAAACGCCGTAACAGAATTAAAGTGTACTGGA-AGCGTTGTC
65 TAGGGGATTAGTGGCGCTTTT-AAAAACGCCGCAAAAGAATTAAAGTGTACTGGACA-CGTCGTC
9005380 GTTTTAGTTGAATATATAGGGGATTAGCAGCG
128 GTTTTAGTTGAATATATA-GGGATTAGCAGCG
* * * *
9005412 TTTTTCTAAAAAACACCGCAAAAGATAGTATTAGTTTAAAGAAAACGGTGCCGTTTTAGTATAGT
1 TTTTTTTAAAAAACGCCGCAAAAAATAGTATTAGTTTAAAGAAAACGGCGCCGTTTTAGTATAGT
* * * * *
9005477 AGTGTATTAGTGGCGCTTTTAAAAATGCCGCAAAAGAATTAAAGTTTACTGTACACGTCGTCGTT
66 AGGGGATTAGTGGCGCTTTTAAAAACGCCGCAAAAGAATTAAAGTGTACTGGACACGTCGTCGTT
*
9005542 TTAGTTGAATATATAGGGATTAGCGGCG
131 TTAGTTGAATATATAGGGATTAGCAGCG
*
9005570 TTTTTTTAATAAACGCCGCAAA
1 TTTTTTTAAAAAACGCCGCAAA
9005592 TAACATTAAT
Statistics
Matches: 158, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
158 58 0.37
159 93 0.59
160 7 0.04
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (158 bp):
TTTTTTTAAAAAACGCCGCAAAAAATAGTATTAGTTTAAAGAAAACGGCGCCGTTTTAGTATAGT
AGGGGATTAGTGGCGCTTTTAAAAACGCCGCAAAAGAATTAAAGTGTACTGGACACGTCGTCGTT
TTAGTTGAATATATAGGGATTAGCAGCG
Found at i:9007322 original size:8 final size:8
Alignment explanation
Indices: 9007309--9007351 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
9007299 TGATTATGAT
9007309 AATAGTGG
1 AATAGTGG
9007317 AATAGTGG
1 AATAGTGG
*
9007325 AATAGTGT
1 AATAGTGG
* *
9007333 AATAGAGT
1 AATAGTGG
9007341 AATAGTGG
1 AATAGTGG
9007349 AAT
1 AAT
9007352 TTTTTGATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (8 bp):
AATAGTGG
Found at i:9008206 original size:5 final size:5
Alignment explanation
Indices: 9008198--9008232 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
9008188 GTATTTAAAG
9008198 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
9008233 ATCACGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:9008221 original size:58 final size:58
Alignment explanation
Indices: 9008150--9008381 Score: 279
Period size: 58 Copynumber: 4.2 Consensus size: 58
9008140 TTTTGTCTAC
9008150 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
* * * * * ** * * *
9008208 TTTTATTTTA-TTTT--ATT--TTATTTTAA-T-CA-CG-A-AAAAACTTTT-GTCTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
9008255 CTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
1 -TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
*
9008314 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
9008372 TTTTATTTTA
1 TTTTATTTTA
9008382 ATCACGAAGA
Statistics
Matches: 141, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
47 3 0.02
48 17 0.12
49 5 0.04
50 1 0.01
51 4 0.03
52 1 0.01
53 12 0.09
54 1 0.01
55 4 0.03
56 1 0.01
57 5 0.04
58 84 0.60
59 3 0.02
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (58 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
Found at i:9008358 original size:29 final size:29
Alignment explanation
Indices: 9008268--9008360 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
9008258 TTATTTTATT
9008268 TTTAAATTACCTAATTAAATTAAATTGTA
1 TTTAAATTACCTAATTAAATTAAATTGTA
* ** ** *
9008297 TTTAAAGTT---TTATTTTATTTTATTTTA
1 TTTAAA-TTACCTAATTAAATTAAATTGTA
9008324 TTTTTAAATTACCTAATTAAATTAAATTGTA
1 --TTTAAATTACCTAATTAAATTAAATTGTA
9008355 TTTAAA
1 TTTAAA
9008361 ATTTTATTTT
Statistics
Matches: 46, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
27 12 0.26
28 2 0.04
29 18 0.39
30 2 0.04
31 12 0.26
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (29 bp):
TTTAAATTACCTAATTAAATTAAATTGTA
Found at i:9008366 original size:106 final size:105
Alignment explanation
Indices: 9008150--9008375 Score: 296
Period size: 106 Copynumber: 2.1 Consensus size: 105
9008140 TTTTGTCTAC
9008150 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
** ** ** *
9008215 TTATTTTATTTTATTTTAATCACGAAAAAACTTTTGTCTAC
66 TTATTTTAAATTATCCTAATCAC-AAAAAACTTTTGTAAAA
9008256 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
* * *
9008321 TTATTTTTAAATTA-CCTAATTA-AATTAAA-TTGTATTTAAAA
66 TTA-TTTTAAATTATCCTAATCACAA-AAAACTT-T-TGTAAAA
9008362 TTTTATTTTATTTT
1 TTTTATTTTATTTT
9008376 ATTTTAATCA
Statistics
Matches: 106, Mismatches: 10, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
104 4 0.04
105 4 0.04
106 90 0.85
107 8 0.08
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
TTATTTTAAATTATCCTAATCACAAAAAACTTTTGTAAAA
Found at i:9008650 original size:10 final size:9
Alignment explanation
Indices: 9008634--9008740 Score: 85
Period size: 9 Copynumber: 11.7 Consensus size: 9
9008624 AAATATATAT
*
9008634 CATATTTTA
1 CATAATTTA
9008643 CATAATTTA
1 CATAATTTA
*
9008652 CATAACTTA
1 CATAATTTA
9008661 CATAA--TA
1 CATAATTTA
9008668 CATAAATATATA
1 CAT-AAT-T-TA
9008680 TCAT-ATCTTA
1 -CATAAT-TTA
9008690 CATAATTTA
1 CATAATTTA
**
9008699 CATAATTCG
1 CATAATTTA
* *
9008708 GATAACTTA
1 CATAATTTA
9008717 CATAATTTA
1 CATAATTTA
*
9008726 CATAACTTA
1 CATAATTTA
9008735 CATAAT
1 CATAAT
9008741 ACATAAATAT
Statistics
Matches: 78, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
7 5 0.06
8 2 0.03
9 59 0.76
10 4 0.05
11 3 0.04
12 2 0.03
13 3 0.04
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (9 bp):
CATAATTTA
Found at i:9008661 original size:18 final size:18
Alignment explanation
Indices: 9008640--9008740 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
9008630 ATATCATATT
9008640 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
*
9008658 TTACATAA--TACATAAA
1 TTACATAATTTACATAAC
* *
9008674 TATATATCATATCTTACATAAT
1 T-TACAT-A-AT-TTACATAAC
***
9008696 TTACATAATTCGGATAAC
1 TTACATAATTTACATAAC
9008714 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
9008732 TTACATAAT
1 TTACATAAT
9008741 ACATAAATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
16 8 0.12
17 4 0.06
18 38 0.58
19 3 0.05
20 1 0.02
21 4 0.06
22 8 0.12
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.39
Consensus pattern (18 bp):
TTACATAATTTACATAAC
Found at i:9013824 original size:13 final size:14
Alignment explanation
Indices: 9013808--9013836 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9013798 TTATAAATAT
9013808 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
9013821 TTATAATGGTTTAA
1 TTATAATGGTTTAA
9013835 TT
1 TT
9013837 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:9014270 original size:21 final size:21
Alignment explanation
Indices: 9014245--9014300 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
9014235 AACTTAGAGA
9014245 AGCGGCAGCAGCGAGAGAGGC
1 AGCGGCAGCAGCGAGAGAGGC
9014266 AGCGGCAGCAGCGAGAGAGGC
1 AGCGGCAGCAGCGAGAGAGGC
*
9014287 AGAGGCAGCAGCGA
1 AGCGGCAGCAGCGA
9014301 TGGCAGTAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.30, C:0.23, G:0.46, T:0.00
Consensus pattern (21 bp):
AGCGGCAGCAGCGAGAGAGGC
Found at i:9014587 original size:30 final size:31
Alignment explanation
Indices: 9014552--9014616 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
9014542 TGTATTTTTT
* *
9014552 ATGCTACATTTTCT-TTTTTGGTTGGATTTC
1 ATGCTACATTTTCTGTTTTAGGTTGGATTTA
*
9014582 ATGCTATATTTTCTGTTTTAGGTTGGATTTA
1 ATGCTACATTTTCTGTTTTAGGTTGGATTTA
9014613 ATGC
1 ATGC
9014617 AGGAAGGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.17, C:0.11, G:0.18, T:0.54
Consensus pattern (31 bp):
ATGCTACATTTTCTGTTTTAGGTTGGATTTA
Found at i:9015395 original size:13 final size:13
Alignment explanation
Indices: 9015374--9015444 Score: 72
Period size: 13 Copynumber: 5.5 Consensus size: 13
9015364 AAATTTTTCC
9015374 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
9015387 AAAGTACTTCTCA
1 AAAGCACTTCTCA
*
9015400 AAAGCACTTTTCCA
1 AAAGCACTTCT-CA
** *
9015414 CCA-CACTTTTCA
1 AAAGCACTTCTCA
*
9015426 AAAGCACTTTTCA
1 AAAGCACTTCTCA
9015439 AAAGCA
1 AAAGCA
9015445 ATGAAGAACT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
12 3 0.06
13 43 0.88
14 3 0.06
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.27
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:9018519 original size:28 final size:28
Alignment explanation
Indices: 9018485--9018586 Score: 111
Period size: 28 Copynumber: 3.6 Consensus size: 28
9018475 CTTACACCCG
9018485 ATCTCGCACACATAGTGCTCGGTTAATA
1 ATCTCGCACACATAGTGCTCGGTTAATA
* **
9018513 ATTTCGCACACATAGTGC-C--TTACACCCG
1 ATCTCGCACACATAGTGCTCGGTTA-A--TA
* *
9018541 ATCTCGCACACATAGTGCTCGGCTACTA
1 ATCTCGCACACATAGTGCTCGGTTAATA
9018569 ATCTCGCACACATAGTGC
1 ATCTCGCACACATAGTGC
9018587 ATATATTCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 52 0.87
29 1 0.02
31 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (28 bp):
ATCTCGCACACATAGTGCTCGGTTAATA
Found at i:9018539 original size:56 final size:56
Alignment explanation
Indices: 9018464--9018586 Score: 210
Period size: 56 Copynumber: 2.2 Consensus size: 56
9018454 AATTTTGCAT
* * *
9018464 ACACACAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATTTCGC
1 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGCTAATAATCTCGC
*
9018520 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGCTACTAATCTCGC
1 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGCTAATAATCTCGC
9018576 ACACATAGTGC
1 ACACATAGTGC
9018587 ATATATTCAT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (56 bp):
ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGCTAATAATCTCGC
Found at i:9026243 original size:28 final size:28
Alignment explanation
Indices: 9026209--9026310 Score: 122
Period size: 28 Copynumber: 3.6 Consensus size: 28
9026199 CTTACACCCG
9026209 ATCTCGCACACATAGTGCTCGGTTA-ATA
1 ATCTCGCACACATAGTGCTCGGTTACA-A
* *
9026237 ATTTCGCACACATAGTGC-C--TTACACCCG
1 ATCTCGCACACATAGTGCTCGGTTACA---A
9026265 ATCTCGCACACATAGTGCTCGGTTACAA
1 ATCTCGCACACATAGTGCTCGGTTACAA
9026293 ATCTCGCACACATAGTGC
1 ATCTCGCACACATAGTGC
9026311 ATATATTCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 52 0.83
29 1 0.02
31 5 0.08
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.25
Consensus pattern (28 bp):
ATCTCGCACACATAGTGCTCGGTTACAA
Found at i:9026263 original size:56 final size:56
Alignment explanation
Indices: 9026187--9026310 Score: 205
Period size: 56 Copynumber: 2.2 Consensus size: 56
9026177 TAATTTTGCA
* * *
9026187 CACACACAATGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTA-ATAATTTCG
1 CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTACA-AATCTCG
9026243 CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTACAAATCTCG
1 CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTACAAATCTCG
9026299 CACACATAGTGC
1 CACACATAGTGC
9026311 ATATATTCAT
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
56 63 0.98
57 1 0.02
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.23
Consensus pattern (56 bp):
CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTACAAATCTCG
Found at i:9033724 original size:16 final size:16
Alignment explanation
Indices: 9033703--9033733 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9033693 TGTCAACATC
9033703 GTGACGCATAAAAATA
1 GTGACGCATAAAAATA
9033719 GTGACGCATAAAAAT
1 GTGACGCATAAAAAT
9033734 TTGTAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (16 bp):
GTGACGCATAAAAATA
Found at i:9047191 original size:46 final size:46
Alignment explanation
Indices: 9047130--9047442 Score: 390
Period size: 46 Copynumber: 7.0 Consensus size: 46
9047120 TTTCTGTCAT
* *
9047130 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
9047176 GTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
9047222 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* **
9047268 GTTGCCATGGTATCTTTCAACCATGGCCTTACACATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* ** * *
9047314 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* ** *
9047360 GTTGTCATGGTATCTTT----C----TCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
**
9047398 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
9047443 GAGAGCACAC
Statistics
Matches: 240, Mismatches: 19, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
38 35 0.15
42 2 0.01
46 203 0.85
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:9047231 original size:92 final size:92
Alignment explanation
Indices: 9047130--9047428 Score: 434
Period size: 92 Copynumber: 3.3 Consensus size: 92
9047120 TTTCTGTCAT
9047130 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
**
9047195 ACCATGGTCTTATTCATTTCATATCAG
66 ACCATGGTCTTACACATTTCATATCAG
*
9047222 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
* *
9047287 ACCATGGCCTTACACATTTCATATCAC
66 ACCATGGTCTTACACATTTCATATCAG
* ** * * * *
9047314 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGTCATGGTATCTTT--
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
9047377 --C----TCTTACACATTTCATATCAG
66 ACCATGGTCTTACACATTTCATATCAG
9047398 GTTGCCATGGTATCTTTCAACCATGGTCTTA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTA
9047429 CACATTTCAT
Statistics
Matches: 191, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
84 48 0.25
88 1 0.01
92 142 0.74
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (92 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
ACCATGGTCTTACACATTTCATATCAG
Found at i:9047288 original size:138 final size:138
Alignment explanation
Indices: 9047082--9047442 Score: 452
Period size: 138 Copynumber: 2.6 Consensus size: 138
9047072 TTTGACATGA
* * * *
9047082 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGTTGCCATGGTATCTT
** * * **
9047146 TCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCA
61 TCAACCATGGTCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACA
9047211 TTTCATATCAGGT
126 TTTCATATCAGGT
9047224 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
*
9047289 CATGGCCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
9047354 TATTAGGT
131 TATCAGGT
* ** * * *
9047362 TGTCATGGTATCTTT----C----TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
9047419 CATGGTCTTACACATTTCATATCA
66 CATGGTCTTACACATTTCATATCA
9047443 GAGAGCACAC
Statistics
Matches: 199, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
130 59 0.30
134 1 0.01
137 5 0.03
138 109 0.55
139 1 0.01
141 1 0.01
142 23 0.12
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:9047391 original size:38 final size:38
Alignment explanation
Indices: 9047340--9047415 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
9047330 TCAACCATGG
* *
9047340 TCTTACACATTTCATATTAGGTTGTCATGGTATCTTTC
1 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
9047378 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
1 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
9047416 AACCATGGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (38 bp):
TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
Found at i:9049543 original size:16 final size:16
Alignment explanation
Indices: 9049524--9049562 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9049514 AATTTTTCCC
*
9049524 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
*
9049540 TTTTCCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
9049556 TCTTTCC
1 TTTTTCC
9049563 CCTGCTCTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:9049620 original size:16 final size:18
Alignment explanation
Indices: 9049591--9049631 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
9049581 TCATCCTTTC
9049591 TTTCTTTTTCTATT-CTT
1 TTTCTTTTTCTATTCCTT
9049608 TTTCTTTTT-TATTCCTT
1 TTTCTTTTTCTATTCCTT
*
9049625 TTACTTT
1 TTTCTTT
9049632 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTCTATTCCTT
Found at i:9050510 original size:6 final size:6
Alignment explanation
Indices: 9050499--9050537 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
9050489 GTTCCTCTAT
9050499 TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTT
1 TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTT
9050538 GTCTCTGAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTCC
Found at i:9052578 original size:7 final size:7
Alignment explanation
Indices: 9052556--9052589 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
9052546 ATTGATTAAT
9052556 ATTTAGAA
1 ATTTAG-A
9052564 ATTTTAGA
1 A-TTTAGA
9052572 ATTTAGA
1 ATTTAGA
9052579 ATTTAGA
1 ATTTAGA
9052586 ATTT
1 ATTT
9052590 TCTTATGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 17 0.68
8 3 0.12
9 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (7 bp):
ATTTAGA
Found at i:9052961 original size:20 final size:20
Alignment explanation
Indices: 9052936--9052973 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9052926 TATTTGTTTT
9052936 AAATA-TTTAACAAGAATGAA
1 AAATATTTTAA-AAGAATGAA
9052956 AAATATTTTAAAAGAATG
1 AAATATTTTAAAAGAATG
9052974 TTTACTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (20 bp):
AAATATTTTAAAAGAATGAA
Found at i:9053951 original size:25 final size:25
Alignment explanation
Indices: 9053903--9053951 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
9053893 AATTTAATTT
*
9053903 AAAAAAATAAAAATTAAATTGATAG
1 AAAAAAATAAAAATTAAATAGATAG
*
9053928 AAAAAATATAAACATTAAA-AGATA
1 AAAAAA-ATAAAAATTAAATAGATA
9053952 AAATTATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.22
Consensus pattern (25 bp):
AAAAAAATAAAAATTAAATAGATAG
Found at i:9059111 original size:16 final size:18
Alignment explanation
Indices: 9059075--9059113 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
9059065 AATTTTAAAA
*
9059075 AAAATCAAAATAATTTTT
1 AAAATCAAAATAATATTT
9059093 AAAAT-AAAA-AATATTT
1 AAAATCAAAATAATATTT
9059109 AAAAT
1 AAAAT
9059114 TTTTCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 4 0.20
18 5 0.25
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATCAAAATAATATTT
Found at i:9059117 original size:26 final size:26
Alignment explanation
Indices: 9059086--9059138 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
9059076 AAATCAAAAT
9059086 AATTTTT-AAAATAAAAAATATTTAA
1 AATTTTTCAAAATAAAAAATATTTAA
** *
9059111 AATTTTTCAAAATTTAAAATTTTTAA
1 AATTTTTCAAAATAAAAAATATTTAA
9059137 AA
1 AA
9059139 AAATTATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
AATTTTTCAAAATAAAAAATATTTAA
Found at i:9059122 original size:19 final size:18
Alignment explanation
Indices: 9059100--9059159 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 18
9059090 TTTAAAATAA
9059100 AAAATATTTAAAATTTTTC
1 AAAA-ATTTAAAATTTTTC
*
9059119 -AAAATTTAAAATTTTTAA
1 AAAAATTTAAAATTTTT-C
*
9059137 AAAAATTATAAAA-ATTTC
1 AAAAATT-TAAAATTTTTC
9059155 AAAAA
1 AAAAA
9059160 ATAAAAATTC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
17 13 0.37
18 8 0.23
19 9 0.26
20 5 0.14
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATTTAAAATTTTTC
Found at i:9059139 original size:17 final size:17
Alignment explanation
Indices: 9059100--9059139 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
9059090 TTTAAAATAA
9059100 AAAATATTTAAAATTTTT
1 AAAA-ATTTAAAATTTTT
*
9059118 CAAAATTTAAAATTTTT
1 AAAAATTTAAAATTTTT
9059135 AAAAA
1 AAAAA
9059140 AATTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAAATTTAAAATTTTT
Found at i:9059789 original size:27 final size:28
Alignment explanation
Indices: 9059736--9059790 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
9059726 TTTTTTATCG
*
9059736 AATTTATCAAAAAAAATTTAAACTTTTA
1 AATTTATCAAAAAAAATATAAACTTTTA
*
9059764 AATTTAT-AATAAAAATAATAAA-TTTTA
1 AATTTATCAAAAAAAAT-ATAAACTTTTA
9059791 CACACAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (28 bp):
AATTTATCAAAAAAAATATAAACTTTTA
Found at i:9059915 original size:19 final size:19
Alignment explanation
Indices: 9059869--9059906 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
9059859 AATCTCTCTC
9059869 AATAAA-AATTTTTAAAAA
1 AATAAATAATTTTTAAAAA
9059887 AATCAAAATAATTTTTAAAA
1 AAT--AAATAATTTTTAAAA
9059907 GGATAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
20 3 0.18
21 11 0.65
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (19 bp):
AATAAATAATTTTTAAAAA
Found at i:9060517 original size:22 final size:25
Alignment explanation
Indices: 9060457--9060526 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 25
9060447 ATCCCCAACA
9060457 AAATCTTTTCTTTTATCATAAAATTG
1 AAATC-TTTCTTTTATCATAAAATTG
9060483 AAAATCTTTTCTTTTATCATAAAATTG
1 -AAATC-TTTCTTTTATCATAAAATTG
9060510 -AA-C-TTCTTTTATACATA
1 AAATCTTTCTTTTAT-CATA
9060527 CCTGAAAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.21
23 4 0.10
24 1 0.02
25 2 0.05
27 26 0.62
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (25 bp):
AAATCTTTCTTTTATCATAAAATTG
Found at i:9060519 original size:27 final size:27
Alignment explanation
Indices: 9060456--9060511 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
9060446 GATCCCCAAC
9060456 AAAATCTTTTCTTTTATCATAAAATTG
1 AAAATCTTTTCTTTTATCATAAAATTG
9060483 AAAATCTTTTCTTTTATCATAAAATTG
1 AAAATCTTTTCTTTTATCATAAAATTG
9060510 AA
1 AA
9060512 CTTCTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (27 bp):
AAAATCTTTTCTTTTATCATAAAATTG
Found at i:9061430 original size:811 final size:811
Alignment explanation
Indices: 9059044--9061505 Score: 4392
Period size: 838 Copynumber: 3.0 Consensus size: 811
9059034 AAAAATGAGC
**
9059044 AAATTAATCTCTCTCAATAAAAA-TTTTAAAAAAAATCAAAATAATTTTTAAAATAAAAAATATT
1 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
* *
9059108 TAAAATTTTTCAAAATTTAAAATTTTTAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCGAT
66 TAAAAATTTTCAAAATTTAAAATTTTTAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
9059173 ATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
131 ATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
9059238 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
196 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
*
9059303 TTAGTTACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
261 TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
* *
9059368 TAAATTTAGTTCTCCAATGTTTATACATTTTATCAAATTGATCCTAAATCTAAAAATTCAACAGA
326 TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
*
9059433 TTTAGCCCTTAATGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
391 TTTAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
9059498 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATA
456 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATA
9059563 AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGA
521 AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGA
* *
9059628 TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTGAACTTCTTTTATACATACCTG
586 TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACCTA
9059693 ATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTAAA
651 ATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTAAA
*
9059758 CTTTTAAATTTATAATAAAAATAATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGC
716 CTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGC
9059823 TATAAATATTACAAAGTGAATTAATTTAAAA
781 TATAAATATTACAAAGTGAATTAATTTAAAA
*
9059854 AAATTAATCTCTCTCAATAAAAATTTTT-AAAAAAATCAAAATAATTTTTAAAAGGATAAATATT
1 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
9059918 TAAAAATTTTCAAAATTTAAAATTTTTAAAAAAATTATAAAAATTTCAAAAAAT-AAAATTCGAT
66 TAAAAATTTTCAAAATTTAAAATTTTTAAAAAAATTATAAAAATTTCAAAAAATAAAAATTC--T
* *
9059982 ATATATATATAAAGTTTAAAAAAATTGAGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAG
129 ATATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAG
*
9060047 TTCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACATTTTCAAAATTTAAAA
194 TTCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAA
*
9060112 TTTTAGTCACTCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAAT
259 TTTTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAAT
9060177 AATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATA
324 AATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATA
*
9060242 GATTGAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTA
389 GATTTAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTA
9060307 CAAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAA
454 CAAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAA
*
9060372 TAAAAATTCATTTTTATCATTTAGAAGCTGC-TTGAAAAGCATATGCAATAGCTTTTTTAAATAG
519 TAAAAATTCATTTTTGTCATTTAGAAGCT-CTTTGAAAAGCATATGCAATAGCTTTTTTAAATAG
*
9060436 CGATATAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTGAAAATCTTTTCTTTTATC
583 CGATTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATT--AAA-C--TTC-TTT-T-
*
9060501 ATAAAATTGAACTTCTTTTATACATACCTGAAAAAGGGTGAGTAACATATAAGAGAAATATGATT
640 AT-ACA-T--AC--C-----T--A-A--T---AAAGGGTGAGTAACATATAAGAGAAATATGATT
*
9060566 TTTTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATGAAAATGATAAATTTTACA
686 TTTTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATGATAAATTTTACA
9060631 CACAAGTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAA
751 CACAAGTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAA
9060692 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
1 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
9060757 TAAAAATTTTCAAAATTTAAAATTTTTAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
66 TAAAAATTTTCAAAATTTAAAATTTTTAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
*
9060822 ATATATATAAAGTTTTAAAAAATTGGGTAAATTTCCTGGGTGATCACCCAACTTTTGGGTAAGTT
131 ATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
9060887 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
196 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
9060952 TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
261 TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
9061017 TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
326 TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
* *
9061082 TTTAGCCCTTAGTGTTTATGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
391 TTTAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
9061147 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATA
456 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATA
*
9061212 AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCTA
521 AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGA
9061277 TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACCTA
586 TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACCTA
*
9061342 ATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCAAATTTATCAAAAAAAATTTAAA
651 ATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTAAA
9061407 CTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGC
716 CTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGC
9061472 TATAAATATTACAAAGTGAATTAATTTAAAA
781 TATAAATATTACAAAGTGAATTAATTTAAAA
9061503 AAA
1 AAA
9061506 AATTTAAACT
Statistics
Matches: 1582, Mismatches: 36, Indels: 67
0.94 0.02 0.04
Matches are distributed among these distances:
809 7 0.00
810 109 0.07
811 651 0.41
812 1 0.00
813 2 0.00
814 2 0.00
816 4 0.00
817 4 0.00
818 1 0.00
819 3 0.00
820 2 0.00
821 1 0.00
823 2 0.00
824 1 0.00
825 1 0.00
826 2 0.00
828 1 0.00
829 2 0.00
830 3 0.00
831 1 0.00
832 3 0.00
833 4 0.00
835 2 0.00
836 3 0.00
837 1 0.00
838 673 0.43
839 89 0.06
840 7 0.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (811 bp):
AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
TAAAAATTTTCAAAATTTAAAATTTTTAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
ATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
TTTAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATA
AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGA
TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACCTA
ATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTAAA
CTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGC
TATAAATATTACAAAGTGAATTAATTTAAAA
Found at i:9061438 original size:27 final size:28
Alignment explanation
Indices: 9061384--9061439 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
9061374 ATTTTTTATC
*
9061384 AAATTTATCAAAAAAAATTTAAACTTTT
1 AAATTTATCAAAAAAAATATAAACTTTT
*
9061412 AAATTTAT-AATAAAAATGATAAA-TTTT
1 AAATTTATCAAAAAAAAT-ATAAACTTTT
9061439 A
1 A
9061440 CACACAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (28 bp):
AAATTTATCAAAAAAAATATAAACTTTT
Found at i:9083736 original size:15 final size:15
Alignment explanation
Indices: 9083716--9083758 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
9083706 AAAAAACTCA
9083716 GAAAAACAGGTACAC
1 GAAAAACAGGTACAC
9083731 GAAAAAC---T-CA-
1 GAAAAACAGGTACAC
9083741 GAAAAACAGGTACAC
1 GAAAAACAGGTACAC
9083756 GAA
1 GAA
9083759 TTCAGTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 2 0.09
12 1 0.04
13 1 0.04
14 2 0.09
15 10 0.43
ACGTcount: A:0.56, C:0.19, G:0.19, T:0.07
Consensus pattern (15 bp):
GAAAAACAGGTACAC
Found at i:9083740 original size:25 final size:25
Alignment explanation
Indices: 9083707--9083758 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
9083697 GTTCGGAAGA
9083707 AAAAACTCAGAAAAACAGGTACACG
1 AAAAACTCAGAAAAACAGGTACACG
9083732 AAAAACTCAGAAAAACAGGTACACG
1 AAAAACTCAGAAAAACAGGTACACG
9083757 AA
1 AA
9083759 TTCAGTTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.58, C:0.19, G:0.15, T:0.08
Consensus pattern (25 bp):
AAAAACTCAGAAAAACAGGTACACG
Found at i:9086189 original size:20 final size:19
Alignment explanation
Indices: 9086150--9086189 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9086140 GTTTTTGTTT
*
9086150 TTAAATTTAGAAAAATAAG
1 TTAAATTTAGAAAAAGAAG
*
9086169 TTAATTTTAGAAAAACGAAG
1 TTAAATTTAGAAAAA-GAAG
9086189 T
1 T
9086190 GGTAAAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.33
Consensus pattern (19 bp):
TTAAATTTAGAAAAAGAAG
Found at i:9087017 original size:164 final size:164
Alignment explanation
Indices: 9086714--9087040 Score: 428
Period size: 164 Copynumber: 2.0 Consensus size: 164
9086704 TAATATTTTT
* *
9086714 TTTATATTTATATAATTAGGACAAAAATCAGATTATTGAAACGTATACACACAACTTAAGTGCAA
1 TTTATATTTATATAATTAGGACAAAAATCAGATTATCGAAACATATACACACAACTTAAGTGCAA
* *
9086779 GAGCACTGTCTATTATTAAAAAAACTTGGAAGAGGCGGGATTTGTTTACGTGTCTCGTATCCTTG
66 GAGCACTGTCTATTATTAAAAAAACTTGGAAGAGGCGGGATTTGCTTACCTGTCTCGTATCCTTG
* *
9086844 GTAGGACTAAATTGGAGCCAACACTTATTAGTGC
131 GCAGGACTAAATTGGAGCCAACACTTATCAGTGC
** * * *
9086878 TTTATATTTATATAATTAGGATGAAGATCAGATTATCGAAACATATACACACAATTTAAGTGTGA
1 TTTATATTTATATAATTAGGACAAAAATCAGATTATCGAAACATATACACACAACTTAAGTG-CA
** * * *
9086943 A-AGCACTGTCTATTATTGAGCAACACTTGGAAGAGGCGGGA-TT-CTTGCCTAGTC-CAGTATG
65 AGAGCACTGTCTATTATT-AAAAAAACTTGGAAGAGGCGGGATTTGCTTACCT-GTCTC-GTATC
* *
9087004 CTTGGCGGGACTAAATTGGAGCCCACACTTATCAGTG
127 CTTGGCAGGACTAAATTGGAGCCAACACTTATCAGTG
9087041 TTTTGCTGGA
Statistics
Matches: 141, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
163 5 0.04
164 114 0.81
165 22 0.16
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (164 bp):
TTTATATTTATATAATTAGGACAAAAATCAGATTATCGAAACATATACACACAACTTAAGTGCAA
GAGCACTGTCTATTATTAAAAAAACTTGGAAGAGGCGGGATTTGCTTACCTGTCTCGTATCCTTG
GCAGGACTAAATTGGAGCCAACACTTATCAGTGC
Found at i:9098180 original size:249 final size:252
Alignment explanation
Indices: 9097768--9098366 Score: 704
Period size: 249 Copynumber: 2.3 Consensus size: 252
9097758 AACTATTAAT
**
9097768 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTTTACATTAATAATTTAC
1 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTA--TTTACATTAATAAAATAC
* * *
9097833 TTATTTACATTTTATCAAAAAATTGTTTGTTTGTTTTTCTTTTTGTATGTTTATAAAAAAATGAA
64 TTATTTACATTTTATCAAAAAA-------TTTGTATTTCATTTTGTATGTTTATAAAAAAACGAA
* * * * *
9097898 TAAATTTTTTATTTTATATATATAATGCTTCCATTAATATTTTTCTTTTATTTTTACAACAATAT
122 TAAAATTTTTATTTTATATATATAATGCTTCCATTAATATTTGTATTGTATTTTTACAACAATAA
* * * * * *
9097963 TCTACTTGTTTATATTTTATCAAAAAATTTGTTTATTTTTTTGTATGTTTATAGAAAAACGAGTA
187 TCTACTTATTTACATTTTATCAAAAAAATTATTTATTTTTTTATATGTTTATA-AAAAA-GAATA
9098028 AAA
250 AAA
* * *
9098031 TTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTAGATTAATAAAAT-GTT
1 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTACATTAATAAAATACTT
* * *
9098095 TTTTATATTTTATCAAAAAA-TT-TATTT-ATTTTGTATGTTTAT-AAAAAACGAGTAAAATTTT
66 ATTTACATTTTATCAAAAAATTTGTATTTCATTTTGTATGTTTATAAAAAAACGAATAAAATTTT
* **
9098156 TATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATCTACTTAT
131 TATTTTATATATATAATGCTTCCATTAATATTTGTATTGTATTTTTACAACAATAATCTACTTAT
* ***
9098221 TTACATTTTATCAAAAAAATTATTTGTTTTTTTATATGTTTATAAAAAAGAATATTT
196 TTACATTTTATCAAAAAAATTATTTATTTTTTTATATGTTTATAAAAAAGAATAAAA
* * ** * ** **
9098278 TTTTTATTTTATATAGGTAACGTTTTAATTAATATTTGTATTATATTTTTACAACAATAATCTAC
1 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTA--TTTACATTAATAAAATAC
9098343 TTATTTACATTTTATCAAAAAATT
64 TTATTTACATTTTATCAAAAAATT
9098367 GTTTGTTTGT
Statistics
Matches: 289, Mismatches: 43, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
247 43 0.15
248 5 0.02
249 123 0.43
250 34 0.12
251 5 0.02
252 2 0.01
260 20 0.07
261 13 0.04
263 44 0.15
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (252 bp):
TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTACATTAATAAAATACTT
ATTTACATTTTATCAAAAAATTTGTATTTCATTTTGTATGTTTATAAAAAAACGAATAAAATTTT
TATTTTATATATATAATGCTTCCATTAATATTTGTATTGTATTTTTACAACAATAATCTACTTAT
TTACATTTTATCAAAAAAATTATTTATTTTTTTATATGTTTATAAAAAAGAATAAAA
Found at i:9098325 original size:126 final size:127
Alignment explanation
Indices: 9097765--9098386 Score: 738
Period size: 126 Copynumber: 4.9 Consensus size: 127
9097755 GTTAACTATT
* *
9097765 AATTTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTTTACATTAATAATT
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
* *
9097830 TACTTATTTACATTTTATCAAAAAATTGTTTGTTTGTTTTTCTTTTTGTATGTTTATAAAAAAAT
66 TACTTATTTACATTTTATCAAAAAA---ATTGTTTG---TT-TTTTTGTATGTTTAT-AAAAAAC
9097895 GAATA
123 GAATA
* * * * ** *
9097900 AATTTTTTATTTTATATATATAATGCTTCCATTAATATTTTTCTTTTATTTTTACAACAATATTC
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
* * * * *
9097965 TACTTGTTTATATTTTATCAAAAAATTTGTTTATTTTTTTGTATGTTTATAGAAAAACGAGTA
66 TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTGTATGTTTATA-AAAAACGAATA
* * **
9098028 AAATTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTA--TTTAGATTAATAAAA
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
* * * * * *
9098091 T-GTTTTTTATATTTTATC-AAAAAATT-TAT-TTATTTTGTATGTTTATAAAAAACGAGTA
66 TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTGTATGTTTATAAAAAACGAATA
*
9098149 AAATTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
* *
9098214 TACTTATTTACATTTTATCAAAAAAATTATTTGTTTTTTTATATGTTTATAAAAAA-GAATA
66 TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTGTATGTTTATAAAAAACGAATA
** * * * ** * **
9098275 TTTTTTTTATTTTATATAGGTAACGTTTTAATTAATATTTGTATTATATTTTTACAACAATAATC
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
* *
9098340 TACTTATTTACATTTTATC-AAAAAATTGTTTGTTTGTTTGTTTGTTT
66 TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTGTATGTTT
9098387 TTTTTGCATG
Statistics
Matches: 425, Mismatches: 55, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
121 59 0.14
122 17 0.04
123 15 0.04
124 21 0.05
125 47 0.11
126 89 0.21
127 22 0.05
128 67 0.16
129 2 0.00
132 7 0.02
135 79 0.19
ACGTcount: A:0.33, C:0.06, G:0.07, T:0.54
Consensus pattern (127 bp):
AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTGTATGTTTATAAAAAACGAATA
Found at i:9104209 original size:19 final size:20
Alignment explanation
Indices: 9104162--9104214 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
9104152 CCACCAGCCA
*
9104162 CTCT-TTTTCTCCTTTCTTTT
1 CTCTATTTTCT-CTTTCCTTT
*
9104182 CTTTATTTT-TCTTTCCTTT
1 CTCTATTTTCTCTTTCCTTT
*
9104201 CTCTCTTTTCTCTT
1 CTCTATTTTCTCTT
9104215 CTTCTTTCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 15 0.56
20 8 0.30
21 4 0.15
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (20 bp):
CTCTATTTTCTCTTTCCTTT
Found at i:9104288 original size:22 final size:22
Alignment explanation
Indices: 9104263--9104306 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
9104253 CCCCATTACC
*
9104263 CTTC-TCCACTTTTCTCCTCCCT
1 CTTCTTCC-CTTTCCTCCTCCCT
*
9104285 CTTCTTTCCTTTCCTCCTCCCT
1 CTTCTTCCCTTTCCTCCTCCCT
9104307 TACTTTCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.02, C:0.50, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCTTCCCTTTCCTCCTCCCT
Found at i:9104312 original size:21 final size:21
Alignment explanation
Indices: 9104271--9104321 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
9104261 CCCTTCTCCA
* *
9104271 CTTTTCTCCTCCCTCTTCTTT
1 CTTTCCTCCTCCCTCTACTTT
9104292 CCTTTCCTCCTCCCT-TACTTT
1 -CTTTCCTCCTCCCTCTACTTT
9104313 CTCTTCCTC
1 CT-TTCCTC
9104322 AGTTCACACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.08
21 11 0.42
22 13 0.50
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (21 bp):
CTTTCCTCCTCCCTCTACTTT
Found at i:9119300 original size:53 final size:53
Alignment explanation
Indices: 9119234--9119339 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 53
9119224 AATGATATTG
* * *
9119234 GACGAGGTTGTACCCTGTTGAAGAAAATAAGAGTATTTTTATGAATACAAACA
1 GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAAAACAAACA
9119287 GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAAAACAAACA
1 GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAAAACAAACA
9119340 ATGTCTTAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (53 bp):
GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAAAACAAACA
Found at i:9121399 original size:21 final size:21
Alignment explanation
Indices: 9121373--9121415 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
9121363 AAGAAGCTAA
9121373 CAAATCTCCATAGGACTTAGT
1 CAAATCTCCATAGGACTTAGT
*
9121394 CAAATCTCCCTAGGACTTAGT
1 CAAATCTCCATAGGACTTAGT
9121415 C
1 C
9121416 TTATTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (21 bp):
CAAATCTCCATAGGACTTAGT
Found at i:9123685 original size:43 final size:43
Alignment explanation
Indices: 9123621--9123706 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
9123611 GAAAAGAGAA
9123621 AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
1 AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
*
9123664 AGCTCACTTATGGTTCGGAACTTTGAATTGGTGAATTAGGTAT
1 AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
9123707 GTCTTTTGCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (43 bp):
AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
Found at i:9136567 original size:24 final size:24
Alignment explanation
Indices: 9136535--9136585 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
9136525 AAGTCTGTCA
**
9136535 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
9136559 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
9136583 GGA
1 GGA
9136586 GGAAATCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:9138041 original size:27 final size:27
Alignment explanation
Indices: 9138003--9138114 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
9137993 AGGAAGCGTC
9138003 CTGGTGGCTCTGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
9138030 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
9138057 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
9138085 CTGGTGACTCCGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
9138111 CTGG
1 CTGG
9138115 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:9138109 original size:54 final size:54
Alignment explanation
Indices: 9138003--9138114 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
9137993 AGGAAGCGTC
* * *
9138003 CTGGTGGCTCTGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGATCTGGTGACTCCGCCACATATATCTGTT
* *
9138057 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCCGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTG-ATCTGGTGACTCCGCCACATATATCTGTT
9138111 CTGG
1 CTGG
9138115 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACAATTATCTGATCTGGTGACTCCGCCACATATATCTGTT
Found at i:9146560 original size:30 final size:29
Alignment explanation
Indices: 9146524--9146587 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
9146514 ATGAATCGGA
9146524 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
9146554 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
9146583 AGCTT
1 AGCTT
9146588 CGACTACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:9149470 original size:41 final size:41
Alignment explanation
Indices: 9149425--9149503 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
9149415 ATCTGTAACA
9149425 CTTACAACATCATCATACTTTCCTTATTAAATCTCTTTCTT
1 CTTACAACATCATCATACTTTCCTTATTAAATCTCTTTCTT
9149466 CTTACAACATCATCATACTTTCCTTATTAAATCTCTTT
1 CTTACAACATCATCATACTTTCCTTATTAAATCTCTTT
9149504 TTTAACTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.28, C:0.27, G:0.00, T:0.46
Consensus pattern (41 bp):
CTTACAACATCATCATACTTTCCTTATTAAATCTCTTTCTT
Found at i:9149786 original size:47 final size:48
Alignment explanation
Indices: 9149582--9149875 Score: 193
Period size: 47 Copynumber: 6.2 Consensus size: 48
9149572 TCGCCACTAC
* * *
9149582 CATGTCCCAGACATGGTCTTACGCTGACTATC-TCCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAACAT-CATCGAGGCCGATG
* ** * * **
9149630 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATACG-TGCTAATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTAACAT-CAT-CGAGGCCGATG
* * * *
9149680 TATGTCCCAGACAT-GTCTTACACTAGC--ACGA--AACTTA-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAAC-ATCATC-GAGGCCGATG
9149724 CATGTCCCAGACAT-GTCTTACACTGGCTAACATCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATG
* * *
9149771 CATGTCCCAGACAT-GTCTTACACTGGC--AC-TCACCTCTACGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAACATCA--TCGAGGCCGATG
* * * * * * *
9149817 CTATGTCCCAGACGTGGTCTTACACAGACTATCATGAT-GCGGCTGATG
1 C-ATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATG
9149865 CATGTCCCAGA
1 CATGTCCCAGA
9149876 AACATCTTAC
Statistics
Matches: 196, Mismatches: 32, Indels: 36
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 34 0.17
45 3 0.02
46 14 0.07
47 59 0.30
48 30 0.15
49 42 0.21
50 9 0.05
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATG
Found at i:9149872 original size:94 final size:92
Alignment explanation
Indices: 9149627--9149932 Score: 321
Period size: 94 Copynumber: 3.3 Consensus size: 92
9149617 ATCGAGGCCG
* * * *
9149627 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATACGTGCTAATGTATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACAC-AGCTATCATG-ATGCG-GCTGATGCATGTCCCAGAC
** * *
9149692 ATGTCTTACACTAGCACGAAACT-TAGCCG
63 ATGTCTTACACTAGCACTCACCTCTAGCCA
* * * * *
9149721 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTAACATCATCGAGGCCGATGCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAC-AGCTATCATGAT-GCGGCTGATGCATGTCCCAGACA
*
9149784 TGTCTTACACTGGCACTCACCTCTACGCCA
64 TGTCTTACACTAGCACTCACCTCTA-GCCA
* * * *
9149814 ATGCTATGTCCCAGACGTGGTCTTACACAGACTATCATGATGCGGCTGATGCATGTCCCAGAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACAG-CTATCATGATGCGGCTGATGCATGTCCCAGACAT
* * * *
9149879 ATCTTACACTAGCCCTCAGCTCAATGCCA
65 GTCTTACACTAGCACTCACCTCTA-GCCA
9149908 ATGCCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
9149933 TACTGGCTCT
Statistics
Matches: 175, Mismatches: 31, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
91 37 0.21
92 19 0.11
93 20 0.11
94 82 0.47
95 17 0.10
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGCTATCATGATGCGGCTGATGCATGTCCCAGACATG
TCTTACACTAGCACTCACCTCTAGCCA
Found at i:9149875 original size:141 final size:141
Alignment explanation
Indices: 9149582--9149841 Score: 350
Period size: 139 Copynumber: 1.9 Consensus size: 141
9149572 TCGCCACTAC
* *
9149582 CATGTCCCAGACATGGTCTTACGCTGACTATCTCCATCGAGGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTGACTAACTCCATCGAGGCCGATGCCATGTCCCAGACATGG
* ** *
9149647 TCTTACACTAGCTCTCATGTATACGTGCTAATGTATGTCCCAGACATGTCTTACACTAGCACGAA
66 TCTTACACTAGCACTCACCTATACG-GCCAATGTATGTCCCAGACATGTCTTACACTAGCACGAA
*
9149712 ACTTAGCCGATG
130 ACTGAGCCGATG
*
9149724 CATGTCCCAGACAT-GTCTTACACTGGCTAACAT-CATCGAGGCCGATG-CATGTCCCAGACAT-
1 CATGTCCCAGACATGGTCTTACACTGACTAAC-TCCATCGAGGCCGATGCCATGTCCCAGACATG
* * *
9149785 GTCTTACACTGGCACTCACCTCTAC-GCCAATGCTATGTCCCAGACGTGGTCTTACAC
65 GTCTTACACTAGCACTCACCTATACGGCCAATG-TATGTCCCAGACAT-GTCTTACAC
9149842 AGACTATCAT
Statistics
Matches: 105, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
137 6 0.06
138 13 0.12
139 29 0.28
140 14 0.13
141 28 0.27
142 15 0.14
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (141 bp):
CATGTCCCAGACATGGTCTTACACTGACTAACTCCATCGAGGCCGATGCCATGTCCCAGACATGG
TCTTACACTAGCACTCACCTATACGGCCAATGTATGTCCCAGACATGTCTTACACTAGCACGAAA
CTGAGCCGATG
Found at i:9149884 original size:141 final size:140
Alignment explanation
Indices: 9149616--9149932 Score: 324
Period size: 141 Copynumber: 2.3 Consensus size: 140
9149606 TGACTATCTC
* ** *
9149616 CATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATACGTGCTAATGT
1 CATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACCTATACG-GCCAATGT
* * **
9149681 ATGTCCCAGACATGTCTTACACTAGCACGAAACTTAGCCGATGCATGTCCCAGACATGTCTTACA
65 ATGTCCCAGACATGTCTTACACTAGCACGAAACTGAGCCGATGCATGTCCCAGAAACATCTTACA
9149746 CTGGCTAACAT
130 CTGGCTAACAT
* *
9149757 CATCGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCACCTCTAC-GCCAATGCT
1 CATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACCTATACGGCCAATG-T
* * *
9149819 ATGTCCCAGACGTGGTCTTACAC-AG-AC-TATCATGATGCGGCTGATGCATGTCCCAGAAACAT
65 ATGTCCCAGACAT-GTCTTACACTAGCACGAAAC-TGA-GC--C-GATGCATGTCCCAGAAACAT
* *** *
9149881 CTTACACTAGCCCTCAG
124 CTTACACTGGCTAACAT
* * *
9149898 C-TCAATGCCAATGCCATGTCCCAGACATGGTCTTA
1 CATCGAGGCCGATGCCATGTCCCAGACATGGTCTTA
9149933 TACTGGCTCT
Statistics
Matches: 146, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
136 2 0.01
137 10 0.07
138 17 0.12
139 29 0.20
140 24 0.16
141 58 0.40
142 6 0.04
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (140 bp):
CATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACCTATACGGCCAATGTA
TGTCCCAGACATGTCTTACACTAGCACGAAACTGAGCCGATGCATGTCCCAGAAACATCTTACAC
TGGCTAACAT
Found at i:9153198 original size:15 final size:14
Alignment explanation
Indices: 9153178--9153231 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
9153168 ATTATGAACT
*
9153178 ACCCTAAACTATAAA
1 ACCCTAAACCAT-AA
*
9153193 ACCCTAAACCCTAA
1 ACCCTAAACCATAA
*
9153207 ACCCTAAAACCTTAA
1 ACCCT-AAACCATAA
*
9153222 ACTCTAAACC
1 ACCCTAAACC
9153232 CTAGGGAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (14 bp):
ACCCTAAACCATAA
Found at i:9153201 original size:7 final size:7
Alignment explanation
Indices: 9153191--9153234 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
9153181 CTAAACTATA
9153191 AAACCCT
1 AAACCCT
9153198 AAACCCT
1 AAACCCT
9153205 AAACCCT
1 AAACCCT
*
9153212 AAAACCTT
1 -AAACCCT
*
9153220 AAACTCT
1 AAACCCT
9153227 AAACCCT
1 AAACCCT
9153234 A
1 A
9153235 GGGAAGATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:9153232 original size:22 final size:22
Alignment explanation
Indices: 9153178--9153234 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
9153168 ATTATGAACT
**
9153178 ACCCTAAACTATAAAACCCTAA
1 ACCCTAAACCCTAAAACCCTAA
*
9153200 ACCCTAAACCCTAAAACCTTAA
1 ACCCTAAACCCTAAAACCCTAA
*
9153222 ACTCTAAACCCTA
1 ACCCTAAACCCTA
9153235 GGGAAGATGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (22 bp):
ACCCTAAACCCTAAAACCCTAA
Found at i:9154526 original size:28 final size:28
Alignment explanation
Indices: 9154486--9154541 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
9154476 TGGACAAAAA
9154486 TAGGCTATTTACTAAGCCAATTTGTCAC
1 TAGGCTATTTACTAAGCCAATTTGTCAC
9154514 TAGGCTATTTACTAAGCCAATTTGTCAC
1 TAGGCTATTTACTAAGCCAATTTGTCAC
9154542 CCAACTTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (28 bp):
TAGGCTATTTACTAAGCCAATTTGTCAC
Found at i:9161774 original size:20 final size:20
Alignment explanation
Indices: 9161749--9161800 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
9161739 TCTATTATAT
9161749 AATATATAATAAAATATCTA
1 AATATATAATAAAATATCTA
* *
9161769 AATATATAACAACATATCTA
1 AATATATAATAAAATATCTA
**
9161789 TTTATATAATAA
1 AATATATAATAA
9161801 TATTTTTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.37
Consensus pattern (20 bp):
AATATATAATAAAATATCTA
Found at i:9167930 original size:25 final size:25
Alignment explanation
Indices: 9167902--9167951 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
9167892 TGGTGATTGC
9167902 AAAATCATTAGAAGATGGGTTTTGA
1 AAAATCATTAGAAGATGGGTTTTGA
9167927 AAAATCATTAGAAGATGGGTTTTGA
1 AAAATCATTAGAAGATGGGTTTTGA
9167952 TTATTTGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (25 bp):
AAAATCATTAGAAGATGGGTTTTGA
Found at i:9168625 original size:24 final size:24
Alignment explanation
Indices: 9168597--9168646 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9168587 CATTAGCAGC
9168597 TTTTAGATCTCTATGTATTATTCT
1 TTTTAGATCTCTATGTATTATTCT
9168621 TTTTAGATCTCTATGTATTATTCT
1 TTTTAGATCTCTATGTATTATTCT
9168645 TT
1 TT
9168647 ATCTCAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.08, T:0.60
Consensus pattern (24 bp):
TTTTAGATCTCTATGTATTATTCT
Found at i:9170246 original size:21 final size:20
Alignment explanation
Indices: 9170220--9170260 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
9170210 TTATTAATAA
9170220 AACTAAATCCTAGGAAGATTT
1 AACTAAAT-CTAGGAAGATTT
* *
9170241 AACTAAGTCTAGGGAGATTT
1 AACTAAATCTAGGAAGATTT
9170261 GTTAGCTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (20 bp):
AACTAAATCTAGGAAGATTT
Found at i:9175461 original size:26 final size:26
Alignment explanation
Indices: 9175429--9175536 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
9175419 TGATAAAAAT
*
9175429 TGATAATTGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
9175455 TAATAATGGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
9175481 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9175507 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9175533 TGAT
1 TGAT
9175537 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:9177107 original size:54 final size:54
Alignment explanation
Indices: 9177020--9177163 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
9177010 TGGAGGAAGA
* *
9177020 GTCCCGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
9177074 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
9177128 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
9177164 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:9177174 original size:27 final size:27
Alignment explanation
Indices: 9177025--9177181 Score: 180
Period size: 27 Copynumber: 5.8 Consensus size: 27
9177015 GAAGAGTCCC
* *
9177025 GGTGGCTATGCCACAATTATTTG-ATCT
1 GGTGGCTCTGCCACAA-TATCTGTATCT
*
9177052 GGTGGCTCTGCCACATATATCTGT-CCT
1 GGTGGCTCTGCCACA-ATATCTGTATCT
*
9177079 GGTGGCTATGCCACAATTATCTG-ATCT
1 GGTGGCTCTGCCACAA-TATCTGTATCT
9177106 GGTGGCTCTGCCACATATATCTGT-TCT
1 GGTGGCTCTGCCACA-ATATCTGTATCT
9177133 GGTGGCTCTGCCACAATATCTGTATCT
1 GGTGGCTCTGCCACAATATCTGTATCT
* *
9177160 GGTGACT-TCGTCACAATATCTG
1 GGTGGCTCT-GCCACAATATCTG
9177182 GCAGCCTCGT
Statistics
Matches: 114, Mismatches: 8, Indels: 16
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.09
27 102 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATATCTGTATCT
Found at i:9177175 original size:81 final size:80
Alignment explanation
Indices: 9177025--9177181 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 80
9177015 GAAGAGTCCC
* *
9177025 GGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGC
1 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGC
9177090 CACAATTATCTGATCT
66 CACAA-TATCTGATCT
* * *
9177106 GGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT-T
1 GGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACTAT
*
9177168 CGTCACAATATCTG
64 -GCCACAATATCTG
9177182 GCAGCCTCGT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (80 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGC
CACAATATCTGATCT
Done.