Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 326 of 349
Found at i:108464874 original size:19 final size:19
Alignment explanation
Indices: 108464836--108464874 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
108464826 ATGCATTATT
* * *
108464836 TAAATGTATATCAACTTTA
1 TAAATATATATAAACATTA
108464855 TAAATATATATAAACATTA
1 TAAATATATATAAACATTA
108464874 T
1 T
108464875 CATTGGTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (19 bp):
TAAATATATATAAACATTA
Found at i:108465135 original size:9 final size:9
Alignment explanation
Indices: 108465123--108465156 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
108465113 CATATAAAAA
*
108465123 AATTAACTG
1 AATTAACCG
108465132 AATTAACCG
1 AATTAACCG
108465141 AATTAACCG
1 AATTAACCG
108465150 AAATTAA
1 -AATTAA
108465157 AGTATTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:108466184 original size:14 final size:12
Alignment explanation
Indices: 108466151--108466177 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
108466141 TATTATTTTT
108466151 TATGTGAATAAG
1 TATGTGAATAAG
108466163 TATGTGAATAAG
1 TATGTGAATAAG
108466175 TAT
1 TAT
108466178 TTGTGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (12 bp):
TATGTGAATAAG
Found at i:108472718 original size:82 final size:80
Alignment explanation
Indices: 108472572--108472721 Score: 194
Period size: 82 Copynumber: 1.9 Consensus size: 80
108472562 TATAATAATT
* * *
108472572 CACCGGCATAAAGCCTGCTAGGCCTAAGCCTGTATCACACACCGGCACAAGGCCTGCTAGGCTCA
1 CACCGGCATAAAGCCTGCTAGGCATAAGCCTGTATAACACACCAGCACAAGGCCTGCTAGGCTCA
108472637 AAGTCTGATTTTATA
66 AAGTCTGATTTTATA
* ** * *
108472652 CACCGGCAATAAA-CCTGCTAGGCATAAAGCCTGATTTAATTCACCAGCACAAGTCTTGCTAGGC
1 CACCGGC-ATAAAGCCTGCTAGGCAT-AAGCCTG-TATAACACACCAGCACAAGGCCTGCTAGGC
108472716 TCAAAG
63 TCAAAG
108472722 CCCGAATGTC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 18 0.31
81 12 0.20
82 29 0.49
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (80 bp):
CACCGGCATAAAGCCTGCTAGGCATAAGCCTGTATAACACACCAGCACAAGGCCTGCTAGGCTCA
AAGTCTGATTTTATA
Found at i:108476245 original size:5 final size:6
Alignment explanation
Indices: 108476224--108476295 Score: 60
Period size: 6 Copynumber: 12.2 Consensus size: 6
108476214 AATTTAGCCA
* * *
108476224 TTTATT TTTA-T TGTA-T TTTATT TTTATT TTTATT TTTAGT TTAATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
108476270 TTTGTT TTCTAATT TTT-CT TTTATT T
1 TTTATT TT-T-ATT TTTATT TTTATT T
108476296 GCTTCTGGTA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
5 12 0.23
6 34 0.65
7 2 0.04
8 4 0.08
ACGTcount: A:0.17, C:0.03, G:0.04, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:108476820 original size:20 final size:20
Alignment explanation
Indices: 108476795--108476836 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
108476785 GGAACAAAGC
108476795 TAAACAGTGGTTGAATTCTT
1 TAAACAGTGGTTGAATTCTT
108476815 TAAACAGTGGTTGAATTCTT
1 TAAACAGTGGTTGAATTCTT
108476835 TA
1 TA
108476837 CCACGAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (20 bp):
TAAACAGTGGTTGAATTCTT
Found at i:108479385 original size:22 final size:23
Alignment explanation
Indices: 108479334--108479399 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 23
108479324 TTATTTGTTA
108479334 TATTA-TTTATTTTTATTTTCCT
1 TATTATTTTATTTTTATTTTCCT
* *
108479356 AATT-TTTTA-TTTTATTTTCTT
1 TATTATTTTATTTTTATTTTCCT
108479377 TATTATTTTTATACTTTTATTTT
1 TATTA-TTTTAT--TTTTATTTT
108479400 AATTTTCTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
21 14 0.40
22 7 0.20
23 5 0.14
26 9 0.26
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (23 bp):
TATTATTTTATTTTTATTTTCCT
Found at i:108479549 original size:23 final size:24
Alignment explanation
Indices: 108479501--108479565 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 24
108479491 TTTTTCTTTT
* * *
108479501 TTTCGTTTTA-TTTTTTATTTATC
1 TTTCTTTTTATTTTTTTAGTTAGC
108479524 TTTCTTTTTATTTTTTTAGTT-GC
1 TTTCTTTTTATTTTTTTAGTTAGC
*
108479547 TTTATTTTTTATTTATTTT
1 TTT-CTTTTTATTT-TTTT
108479566 CTTAAAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 13 0.37
24 18 0.51
25 4 0.11
ACGTcount: A:0.12, C:0.06, G:0.05, T:0.77
Consensus pattern (24 bp):
TTTCTTTTTATTTTTTTAGTTAGC
Found at i:108484155 original size:5 final size:5
Alignment explanation
Indices: 108484145--108484183 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
108484135 CAATTTGTGA
108484145 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
108484184 ATATAGATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:108490975 original size:26 final size:26
Alignment explanation
Indices: 108490946--108491002 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
108490936 CTCCTCTAGC
108490946 TTCTATTTCTTGAATCCAACTTGATA
1 TTCTATTTCTTGAATCCAACTTGATA
108490972 TTCTATTTCTTGAATCCAACTTGATA
1 TTCTATTTCTTGAATCCAACTTGATA
108490998 TTCTA
1 TTCTA
108491003 ACTCCCCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (26 bp):
TTCTATTTCTTGAATCCAACTTGATA
Found at i:108492394 original size:24 final size:24
Alignment explanation
Indices: 108492341--108492396 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
108492331 CGAACAATGA
* *
108492341 TGGTGACCTGGTGTACGTCAGATGG
1 TGGTGA-CTGGTGGACGTCAGACGG
108492366 T-GTGACTGGTGGACGTCAGACGG
1 TGGTGACTGGTGGACGTCAGACGG
108492389 TGGTGACT
1 TGGTGACT
108492397 AGTAGTAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 17 0.61
24 10 0.36
25 1 0.04
ACGTcount: A:0.16, C:0.16, G:0.41, T:0.27
Consensus pattern (24 bp):
TGGTGACTGGTGGACGTCAGACGG
Found at i:108492623 original size:21 final size:20
Alignment explanation
Indices: 108492583--108492625 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
108492573 AGGTTAGTGT
**
108492583 TTGGGTTTATTTTTAGTGGA
1 TTGGGTTTATTTGGAGTGGA
108492603 TTGGGTTTATTTCGGAGTGGA
1 TTGGGTTTATTT-GGAGTGGA
108492624 TT
1 TT
108492626 ATTGCCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.14, C:0.02, G:0.33, T:0.51
Consensus pattern (20 bp):
TTGGGTTTATTTGGAGTGGA
Found at i:108497908 original size:12 final size:12
Alignment explanation
Indices: 108497888--108497917 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
108497878 TATGGTTAAT
*
108497888 TTCTTTAGCAGC
1 TTCTGTAGCAGC
108497900 TTCTGTAGCAGC
1 TTCTGTAGCAGC
108497912 TTCTGT
1 TTCTGT
108497918 TGTTTGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.43
Consensus pattern (12 bp):
TTCTGTAGCAGC
Found at i:108498563 original size:91 final size:91
Alignment explanation
Indices: 108498431--108498637 Score: 267
Period size: 91 Copynumber: 2.3 Consensus size: 91
108498421 TTGATTTTAG
* *
108498431 TAAATTCATATAAGAACATTTTATTATTAACAATTTCATGAAA-TTATATATCACTATTAAATTA
1 TAAATTCATATAAGAA-AATTTATTATCAACAATTTCATGAAAGTT-TATATCACTATTAAATTA
* *
108498495 TATTTAAT-ATTAATTATTTTAAATTGTA
64 TATGTAATAATT-ATTATTTTAAATTATA
* * * *
108498523 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAAGTTTATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAACAATTTCATGAAAGTTTATATCACTATTAAATTATA
108498588 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * *
108498614 CAAATTCATA-AATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
108498638 GTTATAATTA
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
90 12 0.12
91 69 0.68
92 21 0.21
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAACAATTTCATGAAAGTTTATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:108498686 original size:16 final size:17
Alignment explanation
Indices: 108498667--108498698 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
108498657 TTATTAAATC
108498667 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
108498683 ATATATTTAATATTAA
1 ATATATTTAATATTAA
108498699 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:108498762 original size:66 final size:63
Alignment explanation
Indices: 108498691--108498903 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
108498681 AAATATATTT
108498691 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
108498755 AG
62 AG
* * * * * * *
108498757 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
108498817 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
108498877 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
108498904 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:108498768 original size:120 final size:120
Alignment explanation
Indices: 108498653--108498945 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
108498643 AATTATTTTA
* * *
108498653 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
108498716 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
108498773 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
108498838 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
108498893 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
108498946 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:108498805 original size:18 final size:17
Alignment explanation
Indices: 108498774--108498808 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
108498764 ATTATTAAGA
108498774 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
108498791 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
108498809 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:108498922 original size:18 final size:17
Alignment explanation
Indices: 108498894--108498928 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
108498884 ATTATTAAGA
*
108498894 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
108498911 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
108498929 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:108499072 original size:18 final size:16
Alignment explanation
Indices: 108499041--108499075 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
108499031 ATTATTAAGA
108499041 ATTTTATTAAATATAT
1 ATTTTATTAAATATAT
108499057 ATTTTAATTAAA-ATAT
1 ATTTT-ATTAAATATAT
108499073 ATT
1 ATT
108499076 AAATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTATTAAATATAT
Found at i:108499075 original size:146 final size:149
Alignment explanation
Indices: 108498882--108499155 Score: 500
Period size: 146 Copynumber: 1.9 Consensus size: 149
108498872 ATAAGAATAT
*
108498882 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
108498947 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
108499010 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
108499029 TAATTATTAAGAATTTTATTAAA-TATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
108499093 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
108499156 CAATAATCAT
Statistics
Matches: 122, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
146 67 0.55
147 50 0.41
148 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:108499332 original size:16 final size:16
Alignment explanation
Indices: 108499311--108499346 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
108499301 GATTTGCTAT
108499311 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
108499327 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
108499343 TACA
1 TACA
108499347 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:108500507 original size:16 final size:16
Alignment explanation
Indices: 108500485--108500552 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
108500475 TTTGGTTCGC
*
108500485 TGTATTGGATTAGACG
1 TGTATTGGATTAGAGG
* *
108500501 CGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
108500517 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
108500533 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
108500549 TGTA
1 TGTA
108500553 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.26, C:0.03, G:0.34, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:108500809 original size:18 final size:17
Alignment explanation
Indices: 108500788--108500822 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
108500778 TTATTATTAA
*
108500788 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
108500806 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
108500823 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:108500876 original size:157 final size:156
Alignment explanation
Indices: 108500682--108500990 Score: 573
Period size: 157 Copynumber: 2.0 Consensus size: 156
108500672 CCCTTAACAT
*
108500682 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
108500747 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
108500812 TTTAATAAAATTCTTAATAATTAGCAG
131 -TTAATAAAATTCTTAATAATTAGCAG
*
108500839 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
108500904 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
108500969 TTAATAAAATTCTTAATAATTA
131 TTAATAAAATTCTTAATAATTA
108500991 ATATTCTTAT
Statistics
Matches: 148, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
156 22 0.15
157 126 0.85
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (156 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
TTAATAAAATTCTTAATAATTAGCAG
Found at i:108500962 original size:16 final size:16
Alignment explanation
Indices: 108500925--108500966 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
108500915 TTAATCATAT
*
108500925 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
108500941 TT-AAATATATTATAA
1 TTAAAATATATTATAA
108500956 TTAAAATATAT
1 TTAAAATATAT
108500967 AATTAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:108500969 original size:13 final size:15
Alignment explanation
Indices: 108500934--108500972 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
108500924 TTTAAACATA
*
108500934 ATTATTATTAAATAT
1 ATTATAATTAAATAT
108500949 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
108500963 A-TATAATTAA
1 ATTATAATTAA
108500973 TAAAATTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.39
14 3 0.13
15 11 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:108501092 original size:14 final size:15
Alignment explanation
Indices: 108501043--108501094 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
108501033 ATAAAATATA
108501043 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
108501058 TATTAAATATATTAT
1 AATTAAATATATTAT
108501073 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
108501086 AATTTAATA
1 AATTAAATA
108501095 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:108501140 original size:120 final size:120
Alignment explanation
Indices: 108500928--108501441 Score: 919
Period size: 120 Copynumber: 4.3 Consensus size: 120
108500918 ATCATATTTA
108500928 AACATAATTATTATTAAATATATTATAATTAAAATATATAA-TTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
108500992 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
108501047 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
108501112 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
108501167 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
108501232 TATTCTTATATGAATTTACTCTAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
108501287 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
108501352 TATTCTTATATGAATTTACTCAAATCCTAATATATGATACTAT-AAATGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAT-ATAAA-TT
* *
108501407 GAA-ATAATTAATATTAAATATATTTTAATTAAAAT
1 -AACATAATTATTATTAAATATATTATAATTAAAAT
108501442 TTATTGTTTA
Statistics
Matches: 384, Mismatches: 7, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
119 48 0.12
120 334 0.87
121 2 0.01
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:108501212 original size:14 final size:15
Alignment explanation
Indices: 108501163--108501334 Score: 60
Period size: 15 Copynumber: 11.6 Consensus size: 15
108501153 GTAAAATATA
108501163 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
108501178 TATTAAATATATTAT
1 AATTAAATATATTAT
*
108501193 AATTAAAATATATAATTT
1 AATT-AAATATAT--TAT
* *
108501211 AATAAAAT-TCTTAAT
1 AATTAAATATATT-AT
*
108501226 AATT-AATATTCTTAT
1 AATTAAATA-TATTAT
* * * *
108501241 -A-TGAATTTACTCT
1 AATTAAATATATTAT
* *
108501254 AATCATAATATATGAT
1 AATTA-AATATATTAT
*
108501270 ACTGTAAA-ATA-TA-
1 AAT-TAAATATATTAT
108501283 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
108501298 TATTAAATATATTAT
1 AATTAAATATATTAT
108501313 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
108501326 AATTTAATA
1 AATTAAATA
108501335 AAATTCTTAA
Statistics
Matches: 115, Mismatches: 24, Indels: 37
0.65 0.14 0.21
Matches are distributed among these distances:
12 3 0.03
13 17 0.15
14 23 0.20
15 38 0.33
16 24 0.21
17 5 0.04
18 5 0.04
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:108503678 original size:15 final size:15
Alignment explanation
Indices: 108503643--108503814 Score: 60
Period size: 15 Copynumber: 11.6 Consensus size: 15
108503633 TTAAGAATTT
*
108503643 TATTAAATTAT-ATA
1 TATTTAATTATAATA
108503657 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
108503671 TATTTAATAATAAT-
1 TATTTAATTATAATA
108503685 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
108503699 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
* * *
108503714 TATTATGATTAGAGTA
1 TATT-TAATTATAATA
* * *
108503730 -AATTCA-TATAAGA
1 TATTTAATTATAATA
*
108503743 -ATATTAATTATTAAGA
1 TAT-TTAATTA-TAATA
* *
108503759 -ATTTTATTAAATTATA
1 TATTTAATT--ATAATA
108503775 TATTTTAATTATAATA
1 TA-TTTAATTATAATA
*
108503791 TATTTAATAATAAT-
1 TATTTAATTATAATA
108503805 TATGTTAATT
1 TAT-TTAATT
108503815 TATATTTTAC
Statistics
Matches: 118, Mismatches: 23, Indels: 33
0.68 0.13 0.19
Matches are distributed among these distances:
12 3 0.03
13 18 0.15
14 19 0.16
15 45 0.38
16 24 0.20
17 3 0.03
18 6 0.05
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:108503687 original size:120 final size:120
Alignment explanation
Indices: 108503536--108504049 Score: 919
Period size: 120 Copynumber: 4.3 Consensus size: 120
108503526 TAAACAATAA
* * *
108503536 ATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-TTTATAGTATCATATATT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-ATTTTACAGTATCATATATT
*
108503598 AGGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
63 ATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
108503656 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
*
108503721 ATTAGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
108503776 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
108503841 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
*
108503896 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
108503961 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATT-AATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
108504015 ATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT
108504050 TAAATATGAT
Statistics
Matches: 384, Mismatches: 7, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
119 49 0.13
120 333 0.87
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
Found at i:108503918 original size:15 final size:15
Alignment explanation
Indices: 108503883--108503934 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
108503873 TTAAGAATTT
*
108503883 TATTAAATTAT-ATA
1 TATTTAATTATAATA
108503897 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
108503911 TATTTAATAATAAT-
1 TATTTAATTATAATA
108503925 TATGTTAATT
1 TAT-TTAATT
108503935 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:108504018 original size:16 final size:16
Alignment explanation
Indices: 108504011--108504052 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
108504001 TTTATTAATT
108504011 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
108504027 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
108504042 AT-TATGTTTAA
1 ATATAT-TTTAA
108504053 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:108504023 original size:13 final size:15
Alignment explanation
Indices: 108504005--108504043 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
108503995 AAGAATTTTA
108504005 TTAATTAT-ATAT-T
1 TTAATTATAATATAT
108504018 TTAATTATAATATAT
1 TTAATTATAATATAT
*
108504033 TTAATAATAAT
1 TTAATTATAAT
108504044 TATGTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 4 0.17
15 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTAATTATAATATAT
Found at i:108504183 original size:18 final size:17
Alignment explanation
Indices: 108504155--108504189 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
108504145 ATTATTAAGA
*
108504155 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
108504172 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
108504190 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:108504195 original size:157 final size:156
Alignment explanation
Indices: 108503987--108504295 Score: 573
Period size: 157 Copynumber: 2.0 Consensus size: 156
108503977 ATAAGAATAT
*
108503987 TAATTATTAAGAATTTTATTAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 TAATTATTAAGAATTTTATTAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
* *
108504052 AATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
108504117 AATAATTTACCAAAACAAATTTCTGC
131 AATAATTTACCAAAACAAATTTCTGC
108504143 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATT-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
108504208 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
108504273 TAATCATTTACCAAAACAAATTT
130 TAATAATTTACCAAAACAAATTT
108504296 ATGTTAAGGG
Statistics
Matches: 148, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
156 20 0.14
157 128 0.86
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTCTGC
Found at i:108504446 original size:16 final size:16
Alignment explanation
Indices: 108504425--108504492 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
108504415 GATTTGCTAT
108504425 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
108504441 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
108504457 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
* *
108504473 TACGCGTCTAATCCAA
1 TACACCTCTAATCCAA
108504489 TACA
1 TACA
108504493 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.37, C:0.34, G:0.03, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:108505652 original size:16 final size:16
Alignment explanation
Indices: 108505631--108505666 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
108505621 TTTGGTTCGC
108505631 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
108505647 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
108505663 TGTA
1 TGTA
108505667 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:108505924 original size:18 final size:17
Alignment explanation
Indices: 108505903--108505937 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
108505893 TTATTATTTA
108505903 ATATATTTTAATTAAAAT
1 ATATATTTTAA-TAAAAT
108505921 ATATATTTTAATAAAAT
1 ATATATTTTAATAAAAT
108505938 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTTTAATAAAAT
Found at i:108506071 original size:18 final size:17
Alignment explanation
Indices: 108506050--108506084 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
108506040 TTATTATTAA
*
108506050 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
108506068 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
108506085 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:108506096 original size:147 final size:149
Alignment explanation
Indices: 108505822--108506096 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
108505812 ATGATTATTG
*
108505822 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
* *
108505887 ACATAATTATTATTTAATATATTTTAATTAAAATATATATTTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
108505952 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
108505971 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
108506034 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
108506097 ATATTCTTAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 94 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:108506128 original size:54 final size:54
Alignment explanation
Indices: 108506070--108506248 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
108506060 ATTAAAATAT
*
108506070 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
108506124 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
108506187 TAT
53 -AC
*
108506190 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
108506244 ATAAT
1 ATAAT
108506249 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:108506191 original size:18 final size:17
Alignment explanation
Indices: 108506170--108506204 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
108506160 TTATTATTAA
108506170 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
108506188 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
108506205 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:108506319 original size:18 final size:17
Alignment explanation
Indices: 108506280--108506311 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
108506270 TTTTAAATAA
108506280 TTAATATTAAATATATT
1 TTAATATTAAATATATT
108506297 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
108506312 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:108506336 original size:120 final size:120
Alignment explanation
Indices: 108506033--108506325 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
108506023 ATCATATTTA
108506033 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
108506098 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
108506153 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
108506218 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
108506274 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
108506326 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:108506436 original size:91 final size:91
Alignment explanation
Indices: 108506341--108506548 Score: 251
Period size: 91 Copynumber: 2.3 Consensus size: 91
108506331 TAATTATAAC
* * * *
108506341 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
108506405 TAATATA-AACTTTCATAAAATTCTTGA
65 TAATATATAA-TTTCATAAAATTCTTAA
* * *
108506432 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * *
108506497 GATATATAATTTCATGAAATTGTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
108506523 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
108506549 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
91 77 0.75
92 24 0.24
93 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:108507077 original size:12 final size:12
Alignment explanation
Indices: 108507062--108507091 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
108507052 AATACAAACA
108507062 ACAGAAGCTGCT
1 ACAGAAGCTGCT
108507074 ACAGAAGCTGCT
1 ACAGAAGCTGCT
*
108507086 AAAGAA
1 ACAGAA
108507092 ATTAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (12 bp):
ACAGAAGCTGCT
Found at i:108511705 original size:26 final size:25
Alignment explanation
Indices: 108511670--108511739 Score: 70
Period size: 26 Copynumber: 2.8 Consensus size: 25
108511660 AGAATCTAGC
*
108511670 GTTTAGAGTTTAAAATTTAATTATAA
1 GTTTAAAGTTTAAAATTTAATT-TAA
* * **
108511696 GTTTAAAGTTTAGAATTTCATTTTT
1 GTTTAAAGTTTAAAATTTAATTTAA
*
108511721 GTTT-AAGGTTAAAATTTAA
1 GTTTAAAGTTTAAAATTTAA
108511740 GATTTTATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
24 12 0.33
25 5 0.14
26 19 0.53
ACGTcount: A:0.37, C:0.01, G:0.13, T:0.49
Consensus pattern (25 bp):
GTTTAAAGTTTAAAATTTAATTTAA
Found at i:108513247 original size:14 final size:14
Alignment explanation
Indices: 108513228--108513268 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
108513218 GTTGGGTTAT
108513228 CCTCTCTAACATTC
1 CCTCTCTAACATTC
108513242 CCTCTCTAACATTC
1 CCTCTCTAACATTC
*
108513256 TCTCTCTAACATT
1 CCTCTCTAACATT
108513269 TAAGCATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.22, C:0.39, G:0.00, T:0.39
Consensus pattern (14 bp):
CCTCTCTAACATTC
Found at i:108533569 original size:3 final size:3
Alignment explanation
Indices: 108533561--108533585 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
108533551 TTTGAATTTG
108533561 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
108533586 ACGCTGCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:108540125 original size:3 final size:3
Alignment explanation
Indices: 108540117--108540141 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
108540107 AATACTCTTG
108540117 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
108540142 GCATTACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:108540572 original size:14 final size:14
Alignment explanation
Indices: 108540555--108540596 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
108540545 TTTTATAATA
108540555 TTTCATGTATATAT
1 TTTCATGTATATAT
*
108540569 TTTCATGCATATAT
1 TTTCATGTATATAT
* *
108540583 TTTCTTTTATATAT
1 TTTCATGTATATAT
108540597 CGTGTACATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (14 bp):
TTTCATGTATATAT
Found at i:108552463 original size:14 final size:14
Alignment explanation
Indices: 108552446--108552484 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
108552436 AGGGCATCTT
108552446 AAAAAAAAAAGAGA
1 AAAAAAAAAAGAGA
108552460 AAAAATAAAAA-AGA
1 AAAAA-AAAAAGAGA
*
108552474 AAAAGAAAAAG
1 AAAAAAAAAAG
108552485 GGGGATCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.23
14 12 0.55
15 5 0.23
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAAGAGA
Found at i:108552470 original size:20 final size:20
Alignment explanation
Indices: 108552445--108552483 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
108552435 AAGGGCATCT
108552445 TAAAAAA-AAAAGAGAAAAAA
1 TAAAAAAGAAAA-AGAAAAAA
108552465 TAAAAAAGAAAAAGAAAAA
1 TAAAAAAGAAAAAGAAAAA
108552484 GGGGGATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (20 bp):
TAAAAAAGAAAAAGAAAAAA
Found at i:108554783 original size:46 final size:46
Alignment explanation
Indices: 108554730--108554905 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
108554720 TATTTGGGCA
108554730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
108554776 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* * *
108554823 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
108554869 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
108554906 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 72 0.67
47 36 0.33
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:108554885 original size:93 final size:93
Alignment explanation
Indices: 108554726--108554897 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
108554716 GGGATATTTG
* *
108554726 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
108554791 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
108554819 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
108554884 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
108554898 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:108556363 original size:87 final size:85
Alignment explanation
Indices: 108556235--108556537 Score: 348
Period size: 87 Copynumber: 3.5 Consensus size: 85
108556225 AATTCTATTT
108556235 TTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
*
108556299 AATTCTATTTTTCAAATTTCTG
66 ATTTCT-TTTTT-AAATTTCTG
* * * *
108556321 TTTTCAAAAATCAACTCATGTTGCGAGAGGTGAATTGAGCCTCAGGACACACTGAGGTAACTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
* *
108556386 ATTTCTTTTTTTTTTAAATTTTTTC
66 ATTTC----TTTTTTAAA-TTTCTG
* * *
108556411 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTATGCTTAGGT-ATT
1 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC-ACGCTGAGGTAATT
* *
108556473 TCCAATTTCTGTTTT--AGTTCATG
63 T-CAATTTCTTTTTTAAATTTC-TG
108556496 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
108556538 TTTAATTTCT
Statistics
Matches: 188, Mismatches: 18, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
83 37 0.20
84 2 0.01
85 7 0.04
86 5 0.03
87 64 0.34
89 3 0.02
90 18 0.10
91 17 0.09
92 35 0.19
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (85 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
ATTTCTTTTTTAAATTTCTG
Found at i:108563631 original size:21 final size:22
Alignment explanation
Indices: 108563587--108563632 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
108563577 TCAAATTTTA
108563587 TTTTATTTTTTTGAAAATTAAC
1 TTTTATTTTTTTGAAAATTAAC
*
108563609 TTTT-TTTTTCTTGAGAATT-AC
1 TTTTATTTTT-TTGAAAATTAAC
108563630 TTT
1 TTT
108563633 GTCATAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.63
Consensus pattern (22 bp):
TTTTATTTTTTTGAAAATTAAC
Found at i:108574398 original size:16 final size:17
Alignment explanation
Indices: 108574368--108574416 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
108574358 ATTAATCATT
108574368 TTAA-GTATATAATTTTA
1 TTAATGTAT-TAATTTTA
108574385 TT-ATGTATTAA-TTTA
1 TTAATGTATTAATTTTA
* *
108574400 TTAATTTATTATTTTTA
1 TTAATGTATTAATTTTA
108574417 AGGAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 6 0.22
16 11 0.41
17 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (17 bp):
TTAATGTATTAATTTTA
Found at i:108574738 original size:17 final size:17
Alignment explanation
Indices: 108574716--108574748 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
108574706 TGGTAGGAAC
*
108574716 ATTTTAATTGTTAATTA
1 ATTTTAATTGGTAATTA
108574733 ATTTTAATTGGTAATT
1 ATTTTAATTGGTAATT
108574749 TTTAGTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTTTAATTGGTAATTA
Found at i:108577096 original size:127 final size:127
Alignment explanation
Indices: 108576868--108577104 Score: 341
Period size: 127 Copynumber: 1.9 Consensus size: 127
108576858 AATTCGAGTT
* *
108576868 GGATTTTAAGGTTCACTCGCTTCGAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATAC
1 GGATTTTAAGATTCACTCGCTTCAAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATAC
* *
108576933 TTTAAGCCTCCAAAAACTAAGATCACCTCATGATTTCCAAAACACACGAAGTAACTCCAATC
66 TTTAAGCCTCCAAAAACCAAGATCACCTCATAATTTCCAAAACACACGAAGTAACTCCAATC
* * * * * *
108576995 GGATTTTGAGATTCACTCG-TTCCAAAGGAATGAAATACCACATCCAGTACGTTAGGACACGATA
1 GGATTTTAAGATTCACTCGCTT-CAAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATA
* * *
108577059 TTTTAAGCCTCCAAAAACCAAGATCACTTTATAATTTCCAAAACAC
65 CTTTAAGCCTCCAAAAACCAAGATCACCTCATAATTTCCAAAACAC
108577105 GCGACGAAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
126 2 0.02
127 94 0.98
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (127 bp):
GGATTTTAAGATTCACTCGCTTCAAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATAC
TTTAAGCCTCCAAAAACCAAGATCACCTCATAATTTCCAAAACACACGAAGTAACTCCAATC
Found at i:108579499 original size:176 final size:176
Alignment explanation
Indices: 108579292--108579688 Score: 600
Period size: 176 Copynumber: 2.3 Consensus size: 176
108579282 GGTGGCTAAA
* * * *
108579292 ATCTGCTCCATAGTTGATACATGGAGATAAGATCTGTAATATTCAGTTTGCTTCCTGCAACTTCA
1 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTGCAACTTCA
* * * ** *
108579357 GAAAGACAAGACTTGTATCTTCAACTTG-CTCTCTACAACTTCAGAGAGATAAGGCTGGTGGCTA
66 GAAAGACAAGACTTGCATCTTCAACCTGTC-CTCTACAACTTCAGAAAGATAAGAATGGCGGCTA
108579421 AAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATT-TTCG
130 AAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTCTT-G
* * *
108579468 ATCTGCTCCATAGCCGATACGTGGAGATAAGATCTATAATTTTCAGTCTACTTCCTGCAACTTCA
1 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTGCAACTTCA
* * * *
108579533 GGAAGATAAGACTTGCATCTTCAACCTGTCCTCTGCAACTTTAGAAAGATAAGAATGGCGGCTAA
66 GAAAGACAAGACTTGCATCTTCAACCTGTCCTCTACAACTTCAGAAAGATAAGAATGGCGGCTAA
108579598 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTCTTG
131 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTCTTG
*
108579644 ATTTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCA
1 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCA
108579689 CTGATGTCGC
Statistics
Matches: 198, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
176 195 0.98
177 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (176 bp):
ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTGCAACTTCA
GAAAGACAAGACTTGCATCTTCAACCTGTCCTCTACAACTTCAGAAAGATAAGAATGGCGGCTAA
AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTCTTG
Found at i:108593612 original size:18 final size:18
Alignment explanation
Indices: 108593583--108593626 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
108593573 ATACCAATGT
*
108593583 TAGTACATATATTTTATTA
1 TAGTATATATA-TTTATTA
*
108593602 TACGTATATATATTTTTTA
1 TA-GTATATATATTTATTA
108593621 TAGTAT
1 TAGTAT
108593627 CATTTTCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 10 0.45
20 8 0.36
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.55
Consensus pattern (18 bp):
TAGTATATATATTTATTA
Found at i:108602771 original size:12 final size:12
Alignment explanation
Indices: 108602754--108602785 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
108602744 GGTTGAACTA
108602754 CATCGCTCGGTT
1 CATCGCTCGGTT
108602766 CATCGCTCGGTT
1 CATCGCTCGGTT
108602778 CATCGCTC
1 CATCGCTC
108602786 AACTGACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.38, G:0.22, T:0.31
Consensus pattern (12 bp):
CATCGCTCGGTT
Found at i:108606035 original size:25 final size:29
Alignment explanation
Indices: 108605982--108606042 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
108605972 ACTAAAAGGG
*
108605982 TATACATATATGTATAATGATATTAGAAA
1 TATACATATATATATAATGATATTAGAAA
108606011 TATAC-TATATATATAAT-AT-TT-GAAA
1 TATACATATATATATAATGATATTAGAAA
108606036 TATACAT
1 TATACAT
108606043 GAAGTGATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 9 0.30
26 3 0.10
27 2 0.07
28 11 0.37
29 5 0.17
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.41
Consensus pattern (29 bp):
TATACATATATATATAATGATATTAGAAA
Found at i:108606371 original size:21 final size:21
Alignment explanation
Indices: 108606341--108606380 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
108606331 ATTAATAATA
108606341 ATACTAATAT-TACATAAAGGT
1 ATACTAATATATAC-TAAAGGT
*
108606362 ATACTTATATATACTAAAG
1 ATACTAATATATACTAAAG
108606381 TTATGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (21 bp):
ATACTAATATATACTAAAGGT
Found at i:108606453 original size:3 final size:3
Alignment explanation
Indices: 108606439--108606539 Score: 59
Period size: 3 Copynumber: 33.7 Consensus size: 3
108606429 TACATAACAT
*
108606439 ATA ATA AAA ATA ATA AT- ATA CATA AT- ATA TATA A-A ATA CATA TATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA -ATA -ATA
* * * * **
108606485 ACA A-A ACA TATA CT- ATA ATA ATA ATA ACA ATA AGG ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
108606529 ATA ATA ATA AT
1 ATA ATA ATA AT
108606540 GTAAAAAAAC
Statistics
Matches: 76, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
2 9 0.12
3 53 0.70
4 14 0.18
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:108608686 original size:71 final size:70
Alignment explanation
Indices: 108608606--108608749 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 70
108608596 TTATTTCTGT
* * * * * *
108608606 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATACACGTTGAGGTATTTTCAGT
1 TTTCAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
108608671 TTATG
66 TTATG
*
108608676 TTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTC-AAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
*
108608741 TTTCTG
65 TTTATG
108608747 TTT
1 TTT
108608750 TTCAATTTCT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
70 4 0.06
71 61 0.94
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (70 bp):
TTTCAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
TTATG
Found at i:108608765 original size:14 final size:14
Alignment explanation
Indices: 108608735--108608768 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
108608725 GCTGAGGTAA
**
108608735 TTTCAATTTCTGTT
1 TTTCAATTTCTACT
108608749 TTTCAATTTCTACT
1 TTTCAATTTCTACT
108608763 TTTCAA
1 TTTCAA
108608769 AAATCAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:108608822 original size:87 final size:87
Alignment explanation
Indices: 108608676--108608841 Score: 278
Period size: 87 Copynumber: 1.9 Consensus size: 87
108608666 TCAGTTTATG
* *
108608676 TTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTGCAA
* *
108608741 TTTCTGTTTTTCAATTTCTACT
66 TTTCTATGTTTCAATTTCTACT
* *
108608763 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTGCAA
1 TTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTGCAA
108608828 TTTCTATGTTTCAA
66 TTTCTATGTTTCAA
108608842 AAATCAACTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (87 bp):
TTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTGCAA
TTTCTATGTTTCAATTTCTACT
Found at i:108608929 original size:75 final size:73
Alignment explanation
Indices: 108608747--108608930 Score: 208
Period size: 73 Copynumber: 2.5 Consensus size: 73
108608737 TCAATTTCTG
* * * *
108608747 TTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACAC
1 TTTTT-AATTTCTATTTTTCAAAAATCAACTCATATGGCGAAAGGAGAGTTGAGCCTCAGAACAC
*
108608812 GCTGAGGTA
65 GCCGAGGTA
* ** * *
108608821 ATTGCAATTTCTATGTTTCAAAAATCAACTCATATGGCGAAAGGAGAGTTGAGCCT-AGGCTCAC
1 TTTTTAATTTCTATTTTTCAAAAATCAACTCATATGGCGAAAGGAGAGTTGAGCCTCA-G--AAC
108608885 ACGCCGAGGTA
63 ACGCCGAGGTA
* * *
108608896 TTTTTAATTTCTGTTTTTCAAAAATCGATTCATAT
1 TTTTTAATTTCTATTTTTCAAAAATCAACTCATAT
108608931 TGTGAGAGGT
Statistics
Matches: 90, Mismatches: 17, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
72 1 0.01
73 47 0.52
74 2 0.02
75 40 0.44
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (73 bp):
TTTTTAATTTCTATTTTTCAAAAATCAACTCATATGGCGAAAGGAGAGTTGAGCCTCAGAACACG
CCGAGGTA
Found at i:108608945 original size:75 final size:73
Alignment explanation
Indices: 108608747--108608947 Score: 233
Period size: 75 Copynumber: 2.7 Consensus size: 73
108608737 TCAATTTCTG
*
108608747 TTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACAC
1 TTTTT-AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACAC
*
108608812 GCTGAGGTA
65 GCCGAGGTA
* ** * * * * *
108608821 ATTGCAATTTCTATGTTTCAAAAATCAACTCATATGGCGAAAGGAGAGTTGAGCCT-AGGCTCAC
1 TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--AAC
108608885 ACGCCGAGGTA
63 ACGCCGAGGTA
* * * *
108608896 TTTTTAATTTCTGTTTTTCAAAAATCGATTCATATTGTGAGAGGTGAGTTGA
1 TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
108608948 ACCTTTTTAA
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
72 1 0.01
73 47 0.46
74 2 0.02
75 53 0.51
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (73 bp):
TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
CCGAGGTA
Found at i:108609036 original size:54 final size:55
Alignment explanation
Indices: 108608896--108609056 Score: 234
Period size: 55 Copynumber: 2.9 Consensus size: 55
108608886 CGCCGAGGTA
* * *
108608896 TTTTTAATTTCTGTTTTTCAAAAATCGATTCATATTGTGAGAGGTGAGTTGAACC
1 TTTTTAATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACC
* *
108608951 TTTTTAATCTCTATTTTTCAAAAATCGACTCATATTGCCAGAGGTGAGTTGAACC
1 TTTTTAATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACC
* * * *
108609006 -TTTTAATTTATATTATTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTTAATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGA
108609057 GCCTCAGGTC
Statistics
Matches: 95, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 45 0.47
55 50 0.53
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (55 bp):
TTTTTAATTTCTATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACC
Found at i:108610529 original size:16 final size:16
Alignment explanation
Indices: 108610510--108610540 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
108610500 CCTCTCTCCT
108610510 TTCTCCCCTCCCTCTC
1 TTCTCCCCTCCCTCTC
*
108610526 TTCTCCCCTCTCTCT
1 TTCTCCCCTCCCTCT
108610541 TTTTCTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (16 bp):
TTCTCCCCTCCCTCTC
Found at i:108611646 original size:20 final size:18
Alignment explanation
Indices: 108611621--108611657 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
108611611 TGTTAGTACA
108611621 TATATTTTATTATATGTATT
1 TATATTTT-TTATA-GTATT
108611641 TATATTTTTTATAGTAT
1 TATATTTTTTATAGTAT
108611658 CATTTTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (18 bp):
TATATTTTTTATAGTATT
Found at i:108612879 original size:14 final size:13
Alignment explanation
Indices: 108612860--108612915 Score: 62
Period size: 12 Copynumber: 4.4 Consensus size: 13
108612850 ATTTTTTAAA
108612860 ATAAATAATATAAC
1 ATAAATAATAT-AC
108612874 ATAAATAATATAC
1 ATAAATAATATAC
*
108612887 A-AAATAATACAC
1 ATAAATAATATAC
* *
108612899 AT-ATTAATTTAC
1 ATAAATAATATAC
108612911 ATAAA
1 ATAAA
108612916 GAGGCTTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
12 20 0.57
13 4 0.11
14 11 0.31
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAAATAATATAC
Found at i:108612893 original size:12 final size:14
Alignment explanation
Indices: 108612860--108612895 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
108612850 ATTTTTTAAA
108612860 ATAAATAATATAAC
1 ATAAATAATATAAC
108612874 ATAAATAATAT-AC
1 ATAAATAATATAAC
108612887 A-AAATAATA
1 ATAAATAATA
108612896 CACATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 8 0.36
13 3 0.14
14 11 0.50
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (14 bp):
ATAAATAATATAAC
Found at i:108613103 original size:13 final size:13
Alignment explanation
Indices: 108613085--108613112 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
108613075 ATAAAGCTAA
108613085 ATGATGTGAAAAT
1 ATGATGTGAAAAT
108613098 ATGATGTGAAAAT
1 ATGATGTGAAAAT
108613111 AT
1 AT
108613113 AAAAAAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.32
Consensus pattern (13 bp):
ATGATGTGAAAAT
Found at i:108616203 original size:27 final size:27
Alignment explanation
Indices: 108616173--108616233 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
108616163 CTTAAAGCCC
*
108616173 AAACCCTAAACCTTAAATATCAAATTG
1 AAACCCTAAACCTTAAATATCAAACTG
* * *
108616200 AAACTCTAAATCTTAAATCTCAAACTG
1 AAACCCTAAACCTTAAATATCAAACTG
*
108616227 AAGCCCT
1 AAACCCT
108616234 GAACATCAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.25, G:0.05, T:0.26
Consensus pattern (27 bp):
AAACCCTAAACCTTAAATATCAAACTG
Found at i:108621242 original size:6 final size:6
Alignment explanation
Indices: 108621231--108621262 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
108621221 CACACTGATT
108621231 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CT
1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CT
108621263 TATCGTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (6 bp):
CTCTCC
Found at i:108621503 original size:9 final size:9
Alignment explanation
Indices: 108621489--108621515 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
108621479 TTTCCTTTTG
108621489 TTTTTGTTT
1 TTTTTGTTT
108621498 TTTTTGTTT
1 TTTTTGTTT
108621507 TTTTTGTTT
1 TTTTTGTTT
108621516 CTAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:108629768 original size:126 final size:127
Alignment explanation
Indices: 108629608--108629846 Score: 444
Period size: 126 Copynumber: 1.9 Consensus size: 127
108629598 GTTTTTACCT
*
108629608 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTCGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
108629673 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTT-AAAAATTTTTTAGAGTGAACTGG
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTTTAGAGTGAACTGG
* *
108629734 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTATGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
108629799 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTT
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTT
108629847 GAGAGAAGAT
Statistics
Matches: 109, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
126 100 0.92
127 9 0.08
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (127 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTTTAGAGTGAACTGG
Found at i:108631118 original size:85 final size:86
Alignment explanation
Indices: 108630989--108631373 Score: 584
Period size: 85 Copynumber: 4.5 Consensus size: 86
108630979 CAACGAAGAT
* *
108630989 AAGATCTGT-AATTTTAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGTGAGTCTTCGACCTGCT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
108631053 CCACCACTGCTCGGAGAG-CC
66 CCACCACTGCTCGGAGAGCCC
* *
108631073 AGGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
*
108631138 CCACCACTGCTCGGTGAGCCC
66 CCACCACTGCTCGGAGAGCCC
* * *
108631159 AAG-TCTGTAAACTTTAGCCTGTTACCTTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
108631223 CCACCACTGCTC-GACGAGCCC
66 CCACCACTGCTCGGA-GAGCCC
* * * *
108631244 AAG-TATGTAAACTTTAGCCTGTTACCCTACTGCTTAGAGGGTTAAGGCGAGTCTTCGACCTACT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
* *
108631308 CCGCCACTGCTCGGCGAGCCC
66 CCACCACTGCTCGGAGAGCCC
*
108631329 -AGATCTGTAAATTTTAGCCTGTTACCCTACTGTTTAGGGGGTTAA
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAA
108631374 TACGTGTATC
Statistics
Matches: 276, Mismatches: 20, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
84 11 0.04
85 260 0.94
86 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (86 bp):
AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
CCACCACTGCTCGGAGAGCCC
Found at i:108631148 original size:41 final size:41
Alignment explanation
Indices: 108631102--108631233 Score: 101
Period size: 41 Copynumber: 3.1 Consensus size: 41
108631092 CTGTTACCCT
108631102 ACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTCCACC
1 ACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTCCACC
* *** * ** *
108631143 ACTGC-TCGGTGAGCCCAAGTCTGTAAACTTT-AGCCTG-T-TACC
1 ACTGCTTAGG-G-GGTTAAGGC-G-AGTCTTTGA-CCTGCTCCACC
108631185 TTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTCCACC
1 --ACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTCCACC
108631228 ACTGCT
1 ACTGCT
108631234 CGACGAGCCC
Statistics
Matches: 64, Mismatches: 16, Indels: 22
0.63 0.16 0.22
Matches are distributed among these distances:
40 3 0.05
41 21 0.33
42 11 0.17
43 11 0.17
44 15 0.23
45 3 0.05
ACGTcount: A:0.18, C:0.27, G:0.26, T:0.29
Consensus pattern (41 bp):
ACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTCCACC
Found at i:108631447 original size:44 final size:43
Alignment explanation
Indices: 108631399--108631543 Score: 143
Period size: 44 Copynumber: 3.3 Consensus size: 43
108631389 TCTGCTTCAC
*
108631399 TATTGCTTAGGGAGATAAGATCTATAATCTTCAGCTTGTTACCT
1 TATTGCTTAGGGAGATAAGATCTGTAATCTTCA-CTTGTTACCT
* * * * * *
108631443 TATTGCTTAGGGAGTTAA-AGCGTGT-ATCTTTAATCTGCT-CCAC
1 TATTGCTTAGGGAGATAAGATC-TGTAATCTTCACT-TGTTACC-T
*
108631486 TATTACTTAGGGAGATAAGATCTGTAATCTTCATCTTGTTACCT
1 TATTGCTTAGGGAGATAAGATCTGTAATCTTCA-CTTGTTACCT
*
108631530 AATTGCTTAGGGAG
1 TATTGCTTAGGGAG
108631544 TTAAAGCCTG
Statistics
Matches: 78, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
42 3 0.04
43 30 0.38
44 42 0.54
45 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (43 bp):
TATTGCTTAGGGAGATAAGATCTGTAATCTTCACTTGTTACCT
Found at i:108631479 original size:87 final size:87
Alignment explanation
Indices: 108630985--108631635 Score: 351
Period size: 85 Copynumber: 7.6 Consensus size: 87
108630975 TGCTCAACGA
* * *
108630985 AGATAAGATCTGTAAT-TTTAGCCTGTTACCCTACTGCTTA-GGAGGTT-AAG-GTG-AGTCTTC
1 AGATAAGATCTGTAATCTTCAGCTTGTTACCCTACTGCTTAGGGA-GTTAAAGCGTGTA-TCTTT
* * * *
108631045 GACCTGCTCCACCACTGC-TCGGAG
64 GATCTGCTCCACTATTGCTTAGG-G
** * * * * * *
108631069 AGCCAGGATCTGTAAAT-TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG--TCTTTG
1 AGATAAGATCTGT-AATCTTCAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTG
* * * *
108631131 ACCTGCTCCACCACTGC-TCGGTG
65 ATCTGCTCCACTATTGCTTAGG-G
** * * * * * * *
108631154 AGCCCAAG-TCTGTAAACTTTAGCCTGTTACCTTACTGCTTAGGGGGTTAAGGCGAG--TCTTTG
1 AG-ATAAGATCTGTAATCTTCAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTG
* * * * *
108631216 ACCTGCTCCACCACTGC-TCGACG
65 ATCTGCTCCACTATTGCTTAG-GG
** * * * * * * *
108631239 AGCCCAAG-TATGTAAACTTTAGCCTGTTACCCTACTGCTTAGAGG-GTTAAGGCGAG--TCTTC
1 AG-ATAAGATCTGTAATCTTCAGCTTGTTACCCTACTGCTTAG-GGAGTTAAAGCGTGTATCTTT
* * * * * *
108631300 GACCTACTCCGCCACTGC-TCGGCG
64 GATCTGCTCCACTATTGCTTAGG-G
*** * * * *
108631324 AGCCCAGATCTGTAAAT-TTTAGCCTGTTACCCTACTGTTTAGGGGGTTAATA-CGTGTATCTTT
1 AGATAAGATCTGT-AATCTTCAGCTTGTTACCCTACTGCTTAGGGAGTTAA-AGCGTGTATCTTT
*
108631387 GATCTGCTTCACTATTGCTTAGGG
64 GATCTGCTCCACTATTGCTTAGGG
* * * *
108631411 AGATAAGATCTATAATCTTCAGCTTGTTACCTTATTGCTTAGGGAGTTAAAGCGTGTATCTTTAA
1 AGATAAGATCTGTAATCTTCAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTGA
*
108631476 TCTGCTCCACTATTACTTAGGG
66 TCTGCTCCACTATTGCTTAGGG
* * *
108631498 AGATAAGATCTGTAATCTTCATCTTGTTA-CCTAATTGCTTAGGGAGTTAAAGCCTGCTAT-TTT
1 AGATAAGATCTGTAATCTTCAGCTTGTTACCCT-ACTGCTTAGGGAGTTAAAGCGTG-TATCTTT
*
108631561 CGATCTG-TCCCACTATTGCTTAAGG
64 -GATCTGCT-CCACTATTGCTTAGGG
* * * * * *
108631586 AGACAAGATCTGTAGTTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAA
1 AGATAAGATCTGTAATCTTCAGCTTGTTACCCTACTGCTTAGGGAGTTAA
108631636 GACTGGTGGT
Statistics
Matches: 484, Mismatches: 60, Indels: 42
0.83 0.10 0.07
Matches are distributed among these distances:
84 18 0.04
85 242 0.50
86 18 0.04
87 140 0.29
88 63 0.13
89 3 0.01
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (87 bp):
AGATAAGATCTGTAATCTTCAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTGA
TCTGCTCCACTATTGCTTAGGG
Found at i:108631579 original size:44 final size:42
Alignment explanation
Indices: 108631443--108631587 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 42
108631433 CTTGTTACCT
* *
108631443 TATTGCTTAGGGAGTTAAAGCGTGTATCTTTAATCTG-CTCCAC
1 TATTGCTTAGGGAGTTAAAGCCTGTAT-TTTCATCTGTC-CCAC
* * * * **
108631486 TATTACTTAGGGAGAT-AAGATCTGTAATCTTCATCTTGTTAC-C
1 TATTGCTTAGGGAGTTAAAG-CCTGT-ATTTTCATC-TGTCCCAC
108631529 TAATTGCTTAGGGAGTTAAAGCCTGCTATTTTCGATCTGTCCCAC
1 T-ATTGCTTAGGGAGTTAAAGCCTG-TATTTTC-ATCTGTCCCAC
*
108631574 TATTGCTTAAGGAG
1 TATTGCTTAGGGAG
108631588 ACAAGATCTG
Statistics
Matches: 78, Mismatches: 15, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
42 3 0.04
43 24 0.31
44 42 0.54
45 9 0.12
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (42 bp):
TATTGCTTAGGGAGTTAAAGCCTGTATTTTCATCTGTCCCAC
Found at i:108631727 original size:44 final size:44
Alignment explanation
Indices: 108631679--108631765 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
108631669 CATGGAGATA
* *
108631679 AGATCCGCTGAAATTT-GATCTGTTCCACTCTTGC-CAGTGGGATG
1 AGATCCGCT-AAATTTAGCT-TGTTCCACTCCTGCTCAGTGGGATG
* *
108631723 AGATCTGCTATATTTAGCTTGTTCCACTCCTGCTCAGTGGGAT
1 AGATCCGCTAAATTTAGCTTGTTCCACTCCTGCTCAGTGGGAT
108631766 AATGCTGGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 18 0.49
44 19 0.51
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (44 bp):
AGATCCGCTAAATTTAGCTTGTTCCACTCCTGCTCAGTGGGATG
Found at i:108632038 original size:179 final size:178
Alignment explanation
Indices: 108631674--108632128 Score: 691
Period size: 179 Copynumber: 2.6 Consensus size: 178
108631664 CGATACATGG
* *
108631674 AGATAAGATCCG-CTGAAATTTGATCTGTTCCACTCTTGCCAGTGGGATGAGATCTGCTATATTT
1 AGATAAGATCTGTC-GAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTT
* * *
108631738 AGCTTGTTCCACTCCTGCTCAGTGGGATAATGCTGGTGGTTTGAATCTGCTCCATTGTCGATACA
65 AGCCTGTTCCACTCCTGCTCAGTGGGATAAGGCTGGTGGTCTGAATCTGCTCCATTGTCGATACA
* * * *
108631803 TGTAGATAAGATTCGTCAAAATTTGATTTGCTCTGCTCCTGCTCAGCGA
130 TGAAGATAAGATTCGCCAAAATTTGATCTGCTCCGCTCCTGCTCAGCGA
* * *
108631852 AGATAAGATTTGTCGAAATTTGATTTGTTCCACTCCAGCCAGTGGGATGAGATCTGCTATATTTA
1 AGATAAGATCTGTCGAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTA
*
108631917 GCCTGCTT-CACTCCTGCTCAGTGAAGATAAGGCTGGTGG-CTGAAATCTGCTCCATTGTCGATA
66 GCCTG-TTCCACTCCTGCTCAGTG-GGATAAGGCTGGTGGTCTG-AATCTGCTCCATTGTCGATA
* *
108631980 CATGAAGGTAAGATTTGCCAAAATTTGATCTGCTCCGCTCCTGCTCAGCGA
128 CATGAAGATAAGATTCGCCAAAATTTGATCTGCTCCGCTCCTGCTCAGCGA
* * *
108632031 AGATAAGATCTGTCGAAATTTGATCTATTTCACTCCTGCTAGTGGGATGAGATCTGCTATATTTA
1 AGATAAGATCTGTCGAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTA
108632096 GCCTGTTCCACTCCTGCTCAGTGGGATAAGGCT
66 GCCTGTTCCACTCCTGCTCAGTGGGATAAGGCT
108632129 TGCCGAAATC
Statistics
Matches: 250, Mismatches: 22, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
178 90 0.36
179 160 0.64
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (178 bp):
AGATAAGATCTGTCGAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTA
GCCTGTTCCACTCCTGCTCAGTGGGATAAGGCTGGTGGTCTGAATCTGCTCCATTGTCGATACAT
GAAGATAAGATTCGCCAAAATTTGATCTGCTCCGCTCCTGCTCAGCGA
Found at i:108633425 original size:17 final size:16
Alignment explanation
Indices: 108633405--108633465 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 16
108633395 TTCTTTCTCT
*
108633405 TTTTTGTTTTTCTCTTC
1 TTTTTCTTTTT-TCTTC
*
108633422 TTTTTCCTTTTTTTTTC
1 TTTTT-CTTTTTTCTTC
*
108633439 TCTTTCCTTTTTTTCTTC
1 T-TTTTC-TTTTTTCTTC
108633457 TTTTT-TTTT
1 TTTTTCTTTT
108633466 AAAAGTGAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
15 4 0.11
17 14 0.39
18 18 0.50
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTTTTCTTC
Found at i:108633450 original size:24 final size:23
Alignment explanation
Indices: 108633383--108633442 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
108633373 TGCCCTCTCC
* * * *
108633383 TTTGCTTTTCTTTTCTTTCTCTTT
1 TTTGTTTTTCTCTTCTTTTTC-CT
108633407 TTTGTTTTTCTCTTCTTTTTCCT
1 TTTGTTTTTCTCTTCTTTTTCCT
108633430 TTT-TTTTTCTCTT
1 TTTGTTTTTCTCTT
108633443 TCCTTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 10 0.31
23 4 0.12
24 18 0.56
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (23 bp):
TTTGTTTTTCTCTTCTTTTTCCT
Found at i:108633452 original size:37 final size:38
Alignment explanation
Indices: 108633393--108633464 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 38
108633383 TTTGCTTTTC
*
108633393 TTTTCTTTCTCTTTTTTGTTTTTC-TCTTCTTTTTCCT
1 TTTTCTTTCTCTTTCTTGTTTTTCTTCTTCTTTTTCCT
* *
108633430 TTTTTTTTCTCTTTCCTT-TTTTTCTTCTTTTTTTT
1 TTTTCTTTCTCTTT-CTTGTTTTTCTTCTTCTTTTT
108633465 TAAAAGTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
37 19 0.63
38 11 0.37
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.79
Consensus pattern (38 bp):
TTTTCTTTCTCTTTCTTGTTTTTCTTCTTCTTTTTCCT
Found at i:108633458 original size:16 final size:16
Alignment explanation
Indices: 108633419--108633459 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
108633409 TGTTTTTCTC
108633419 TTCTT-TTTCCTTTTT
1 TTCTTCTTTCCTTTTT
*
108633434 TTTTCTCTTTCCTTTTT
1 TTCT-TCTTTCCTTTTT
108633451 TTCTTCTTT
1 TTCTTCTTT
108633460 TTTTTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 3 0.14
16 6 0.27
17 13 0.59
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTCTTCTTTCCTTTTT
Found at i:108637818 original size:126 final size:126
Alignment explanation
Indices: 108637657--108637900 Score: 461
Period size: 126 Copynumber: 1.9 Consensus size: 126
108637647 ATTTTTGCCT
*
108637657 TAAGAAGATATTCGAATATTCAAAACAAACAAAGAAAGTGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAAGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
108637722 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAAAGTGAACTGG
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAAAGTGAACTGG
* *
108637783 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAAGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
108637848 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAAAG
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAAAG
108637901 AAAATCAATG
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 115 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (126 bp):
TAAGAAGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAAAGTGAACTGG
Found at i:108638391 original size:19 final size:18
Alignment explanation
Indices: 108638361--108638397 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
108638351 ATATTTACAT
108638361 AATAAATATATAATAATA
1 AATAAATATATAATAATA
108638379 AATAAATAGTATAATAATA
1 AATAAATA-TATAATAATA
108638398 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:108638449 original size:63 final size:63
Alignment explanation
Indices: 108638388--108638505 Score: 163
Period size: 62 Copynumber: 1.9 Consensus size: 63
108638378 AAATAAATAG
*
108638388 TATAATAAT-ATGAAACAT-AA-CTCAAATTAATTAAATTAATAG-AAAATAATAAAAAACAAA
1 TATAAAAATAATGAAA-ATAAAGCTCAAATTAATTAAATTAATAGTAAAATAATAAAAAACAAA
* * *
108638448 TATAAAAATAATGAGAATAAAGCTCAAATTAATTAATTTAATAGTAAAATAACAAAAA
1 TATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAATAGTAAAATAATAAAAA
108638506 TAAAAAAGGG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
60 10 0.20
61 7 0.14
62 21 0.42
63 12 0.24
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (63 bp):
TATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAATAGTAAAATAATAAAAAACAAA
Found at i:108638807 original size:18 final size:18
Alignment explanation
Indices: 108638784--108638819 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
108638774 ATAACAAGTA
* *
108638784 GGGTGATGGAGTTAGTGG
1 GGGTGACGGAGGTAGTGG
108638802 GGGTGACGGAGGTAGTGG
1 GGGTGACGGAGGTAGTGG
108638820 ATGGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.03, G:0.58, T:0.22
Consensus pattern (18 bp):
GGGTGACGGAGGTAGTGG
Found at i:108638852 original size:39 final size:39
Alignment explanation
Indices: 108638798--108638872 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
108638788 GATGGAGTTA
*
108638798 GTGGGGGTGACGGAGGTAGTGGATGGTTTAGTAGGGGGT
1 GTGGGGGTGACGGAGGTAGTAGATGGTTTAGTAGGGGGT
*
108638837 GTGGGGGTGATGGAGGTAGTAGATGGTTTAGTAGGG
1 GTGGGGGTGACGGAGGTAGTAGATGGTTTAGTAGGG
108638873 TGATGGAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.17, C:0.01, G:0.55, T:0.27
Consensus pattern (39 bp):
GTGGGGGTGACGGAGGTAGTAGATGGTTTAGTAGGGGGT
Found at i:108638875 original size:29 final size:29
Alignment explanation
Indices: 108638841--108638903 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
108638831 GGGGGTGTGG
108638841 GGGTGATGGAGGTAGTAGAT-GGTTTAGTA
1 GGGTGATGGAGGTAGT-GATCGGTTTAGTA
* *
108638870 GGGTGATGGAGTTAGTGGTCGGTTTAGTA
1 GGGTGATGGAGGTAGTGATCGGTTTAGTA
108638899 GGGTG
1 GGGTG
108638904 TTTAATTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.19, C:0.02, G:0.48, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGATCGGTTTAGTA
Found at i:108648507 original size:16 final size:16
Alignment explanation
Indices: 108648483--108648519 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
108648473 AGGTTTTGTA
108648483 AAATA-TTTAAAAAAT
1 AAATATTTTAAAAAAT
108648498 AAATATTTTAAAAAAT
1 AAATATTTTAAAAAAT
*
108648514 ATATAT
1 AAATAT
108648520 GTCAATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATTTTAAAAAAT
Found at i:108649899 original size:26 final size:27
Alignment explanation
Indices: 108649864--108649920 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
108649854 TGAATAACAT
* *
108649864 AAAAAAAGTTTAGGTA-CCACTTGTGA
1 AAAAAAAGTTTAGGTATCAACTTGGGA
108649890 AAAAAAAGTTTAGGTATCAACTTGGGA
1 AAAAAAAGTTTAGGTATCAACTTGGGA
108649917 AAAA
1 AAAA
108649921 TGGTATAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 16 0.57
27 12 0.43
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (27 bp):
AAAAAAAGTTTAGGTATCAACTTGGGA
Found at i:108657812 original size:98 final size:98
Alignment explanation
Indices: 108657688--108657883 Score: 356
Period size: 98 Copynumber: 2.0 Consensus size: 98
108657678 AATTTTGTTG
*
108657688 GTTTATGTGAATAACTTAAATAGAAATGGTGGGAGATGAAATTAGGGAAGGACTTGATAAATAAT
1 GTTTATGTGAATAACTTAAATAGAAATGGTGGGAGATGAAATTAGGGAAGGACTTGAGAAATAAT
*
108657753 TAACCCTAAATATTAAAAAGTAAAAGAAAGTTC
66 TAACCCTAAACATTAAAAAGTAAAAGAAAGTTC
* *
108657786 GTTTATGTGAATAACTTAAATGGAAATGGTGGGAGGTGAAATTAGGGAAGGACTTGAGAAATAAT
1 GTTTATGTGAATAACTTAAATAGAAATGGTGGGAGATGAAATTAGGGAAGGACTTGAGAAATAAT
108657851 TAACCCTAAACATTAAAAAGTAAAAGAAAGTTC
66 TAACCCTAAACATTAAAAAGTAAAAGAAAGTTC
108657884 ATAGAGGCCT
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.45, C:0.07, G:0.22, T:0.27
Consensus pattern (98 bp):
GTTTATGTGAATAACTTAAATAGAAATGGTGGGAGATGAAATTAGGGAAGGACTTGAGAAATAAT
TAACCCTAAACATTAAAAAGTAAAAGAAAGTTC
Found at i:108672700 original size:18 final size:18
Alignment explanation
Indices: 108672677--108672711 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
108672667 AATAAAAAAA
*
108672677 TTTGGATAAAAATATTAG
1 TTTGGATAAAAAAATTAG
108672695 TTTGGATAAAAAAATTA
1 TTTGGATAAAAAAATTA
108672712 AACAGATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (18 bp):
TTTGGATAAAAAAATTAG
Found at i:108676132 original size:11 final size:11
Alignment explanation
Indices: 108676118--108676165 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
108676108 CTTTCCTTCC
108676118 TAATAAAATAA
1 TAATAAAATAA
*
108676129 TAATAAAATATCT
1 TAATAAAATA--A
* *
108676142 TATTAAAATAT
1 TAATAAAATAA
108676153 TAATAAAATAA
1 TAATAAAATAA
108676164 TA
1 TA
108676166 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:108678510 original size:12 final size:12
Alignment explanation
Indices: 108678493--108678517 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
108678483 TATATGTGAC
108678493 ATGAAAGATTTA
1 ATGAAAGATTTA
108678505 ATGAAAGATTTA
1 ATGAAAGATTTA
108678517 A
1 A
108678518 CTTTTGGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGAAAGATTTA
Found at i:108678974 original size:21 final size:21
Alignment explanation
Indices: 108678948--108678990 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
108678938 GCGTGTCAAG
108678948 AGATAGTATTGTAAAGTATAT
1 AGATAGTATTGTAAAGTATAT
108678969 AGATAGTATTGTAAAGTATAT
1 AGATAGTATTGTAAAGTATAT
108678990 A
1 A
108678991 CAGAGTACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.37
Consensus pattern (21 bp):
AGATAGTATTGTAAAGTATAT
Found at i:108678997 original size:21 final size:21
Alignment explanation
Indices: 108678952--108678997 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
108678942 GTCAAGAGAT
* *
108678952 AGTATTGTAAAGTATATAGAT
1 AGTATTGTAAAGTATATACAG
108678973 AGTATTGTAAAGTATATACAG
1 AGTATTGTAAAGTATATACAG
108678994 AGTA
1 AGTA
108678998 CCTCAATATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.35
Consensus pattern (21 bp):
AGTATTGTAAAGTATATACAG
Found at i:108685094 original size:21 final size:21
Alignment explanation
Indices: 108685055--108685095 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
108685045 TATTTTTTAT
*
108685055 TTTTTAATATTTATGAAAATA
1 TTTTTAATATTTATCAAAATA
108685076 TTTTTAATAATTT-TCAAAAT
1 TTTTTAAT-ATTTATCAAAAT
108685096 TTAATATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTTTAATATTTATCAAAATA
Found at i:108686058 original size:94 final size:94
Alignment explanation
Indices: 108685878--108686072 Score: 243
Period size: 94 Copynumber: 2.1 Consensus size: 94
108685868 TTGTTAATTT
* * * * *
108685878 ATATATTTAATTAATAATTCTTTTATTTATATAAATAAAATAATAAATATGGAATTGTACAATAA
1 ATATTTTTAATTAATAATTATTTTATTGATATAAACAAAATAATAAATATGGAATTATACAATAA
* *
108685943 AAATATATCTATCTTTCATTATGTTGA-AA
66 AAATATATCTATATGTCATTATGTT-ACAA
* * *
108685972 ATATTTTTAATTAATAATTATTTTATTGATGTAAACAAAATAATAAATATGGAGTTATATAATGA
1 ATATTTTTAATTAATAATTATTTTATTGATATAAACAAAATAATAAATATGGAATTATACAAT-A
*
108686037 GAATATATAT-TATATGT-ATTATGTTACAA
65 -AAAATATATCTATATGTCATTATGTTACAA
108686066 ATATTTT
1 ATATTTT
108686073 ATTTTTTTGA
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
93 1 0.01
94 72 0.83
95 6 0.07
96 8 0.09
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.45
Consensus pattern (94 bp):
ATATTTTTAATTAATAATTATTTTATTGATATAAACAAAATAATAAATATGGAATTATACAATAA
AAATATATCTATATGTCATTATGTTACAA
Found at i:108686268 original size:33 final size:34
Alignment explanation
Indices: 108686201--108686268 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
108686191 ATCAAATAAT
* * *
108686201 TATTTTAAATATTATTATTTTTTTAAATATAAAA
1 TATTTTAAAAATTATTATTTTTATAAATAAAAAA
**
108686235 TATTTTAAAAATTA-TATTTTTATATGTAAAAAA
1 TATTTTAAAAATTATTATTTTTATAAATAAAAAA
108686268 T
1 T
108686269 TAATTGATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 16 0.55
34 13 0.45
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (34 bp):
TATTTTAAAAATTATTATTTTTATAAATAAAAAA
Found at i:108686624 original size:2 final size:2
Alignment explanation
Indices: 108686617--108686644 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
108686607 AGGAAGAGGC
108686617 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
108686645 CGGGGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:108703659 original size:15 final size:15
Alignment explanation
Indices: 108703612--108703653 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
108703602 TAATGAAATT
108703612 TTAAAATATAA-CAAA
1 TTAAAATA-AAGCAAA
108703627 TATAAAAATAAAGCAAA
1 T-T-AAAATAAAGCAAA
108703644 TTAAAATAAA
1 TTAAAATAAA
108703654 TGAAATATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 9 0.38
16 4 0.17
17 11 0.46
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (15 bp):
TTAAAATAAAGCAAA
Found at i:108703825 original size:12 final size:12
Alignment explanation
Indices: 108703809--108703847 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
108703799 TAAATTATAA
108703809 AAAAATGAAAAT
1 AAAAATGAAAAT
* *
108703821 GAAAATAAAAAT
1 AAAAATGAAAAT
108703833 AAAAATGAAAAT
1 AAAAATGAAAAT
108703845 AAA
1 AAA
108703848 TAATATATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AAAAATGAAAAT
Found at i:108703832 original size:18 final size:18
Alignment explanation
Indices: 108703809--108703852 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
108703799 TAAATTATAA
*
108703809 AAAAATGAAAATGAAAAT
1 AAAAATAAAAATGAAAAT
108703827 AAAAATAAAAATGAAAAT
1 AAAAATAAAAATGAAAAT
108703845 AAATAATA
1 AAA-AATA
108703853 TATAAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (18 bp):
AAAAATAAAAATGAAAAT
Found at i:108703852 original size:7 final size:6
Alignment explanation
Indices: 108703809--108703852 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
108703799 TAAATTATAA
* * *
108703809 AAAAAT GAAAAT GAAAAT AAAAAT AAAAAT GAAAAT AAATAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A
108703853 TATAAAATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
6 29 0.88
7 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:108703974 original size:20 final size:20
Alignment explanation
Indices: 108703951--108703989 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
108703941 ATCTAAAATA
108703951 AATAATATACATA-AAATAAG
1 AATAATATA-ATATAAATAAG
*
108703971 AATAATTTAATATAAATAA
1 AATAATATAATATAAATAA
108703990 TGTATATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
AATAATATAATATAAATAAG
Found at i:108704325 original size:26 final size:26
Alignment explanation
Indices: 108704289--108704342 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
108704279 TAAGAAAAGT
108704289 TAGATAAATAAAAATAAATAGAAATA
1 TAGATAAATAAAAATAAATAGAAATA
108704315 TAGATAAATAAAAATAAATAGAAATA
1 TAGATAAATAAAAATAAATAGAAATA
108704341 TA
1 TA
108704343 ATAGTAGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (26 bp):
TAGATAAATAAAAATAAATAGAAATA
Found at i:108718229 original size:24 final size:25
Alignment explanation
Indices: 108718174--108718235 Score: 78
Period size: 24 Copynumber: 2.6 Consensus size: 25
108718164 TTATATTATA
108718174 AAAATATTAT-TTAATTAAAACATT
1 AAAATATTATATTAATTAAAACATT
*
108718198 ATAA-ATTATATTAATT-AAA-ATT
1 AAAATATTATATTAATTAAAACATT
108718220 AAAGATATTATATTAA
1 AAA-ATATTATATTAA
108718236 AGGAAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 5 0.15
23 9 0.27
24 19 0.58
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
AAAATATTATATTAATTAAAACATT
Found at i:108718782 original size:22 final size:22
Alignment explanation
Indices: 108718757--108718817 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 22
108718747 CTTGAATAGA
*
108718757 TATTTATTATATTTATT-ATTAT
1 TATTTATTATATTAATTGA-TAT
108718779 TATTTAATTA-ATTAATTGATAT
1 TATTT-ATTATATTAATTGATAT
108718801 TATATTATTATATTAAT
1 TAT-TTATTATATTAAT
108718818 GAATAAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TATTTATTATATTAATTGATAT
Done.