Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 328 of 349
Found at i:108906934 original size:20 final size:19
Alignment explanation
Indices: 108906877--108906937 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 19
108906867 AATTTTTAAA
108906877 TTTT-TAAA-ATTTTAATT
1 TTTTATAAATATTTTAATT
*
108906894 TTTTATGTATATATTTTAATT
1 TTTTA--TAAATATTTTAATT
108906915 TTTTATAAATATTTTGAATT
1 TTTTATAAATATTTT-AATT
108906935 TTT
1 TTT
108906938 GAAACTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
17 4 0.11
19 9 0.24
20 10 0.27
21 14 0.38
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTTATAAATATTTTAATT
Found at i:108907984 original size:19 final size:18
Alignment explanation
Indices: 108907960--108907995 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
108907950 ATATTTACAA
*
108907960 ATTTTATATTAATATTAAT
1 ATTTTAAATTAA-ATTAAT
108907979 ATTTTAAATTAAATTAA
1 ATTTTAAATTAAATTAA
108907996 ATTAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAAATTAAATTAAT
Found at i:108910339 original size:20 final size:20
Alignment explanation
Indices: 108910314--108910354 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
108910304 CACATTCATG
108910314 CAAAGATGATGATTTTTCTT
1 CAAAGATGATGATTTTTCTT
108910334 CAAAGATGATGATTTTTCTT
1 CAAAGATGATGATTTTTCTT
108910354 C
1 C
108910355 GTTTAGCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (20 bp):
CAAAGATGATGATTTTTCTT
Found at i:108914530 original size:19 final size:18
Alignment explanation
Indices: 108914494--108914537 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
108914484 AAGTTGTTTG
*
108914494 TTTA-TTTTTCTTATTTA
1 TTTATTTTTTCTCATTTA
108914511 TTTATTTTTATCTCATTTA
1 TTTATTTTT-TCTCATTTA
*
108914530 TATATTTT
1 TTTATTTT
108914538 ACGATTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 4 0.17
19 15 0.65
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTATTTTTTCTCATTTA
Found at i:108916435 original size:326 final size:326
Alignment explanation
Indices: 108915842--108916498 Score: 1260
Period size: 326 Copynumber: 2.0 Consensus size: 326
108915832 CCAATTCTTG
*
108915842 CAGAATCAAAGAATGGCTTACGAGTATGAGTACATCGTTTTATTTATGCCATAGTCCAATTATGG
1 CAGAATCAAAGAATGGCTTACGAGTATGAGTACATCGTTTTATTTATCCCATAGTCCAATTATGG
*
108915907 TCTTACATGTATGTTGTTATGGCCCTGCCATGGTCTTACATTCGCAGTGCCATAACCCAGTTATG
66 TCTTACATGTATGTTGTTATGGCCCTGCCATGGTCTTACATTAGCAGTGCCATAACCCAGTTATG
*
108915972 GTTTTATTATCAGATTGCAATAGCCTATTATCACTGCCTTGGTCCAACCATGGTCTTATGTTCGT
131 GTATTATTATCAGATTGCAATAGCCTATTATCACTGCCTTGGTCCAACCATGGTCTTATGTTCGT
* *
108916037 AGTGTCATAACCCAATTATGGTCTTATCCGTTAATTCATTCTTTACATTAATGTCATAGCCTAGC
196 AGTGCCATAACCCAATTATGGTCTTATCCATTAATTCATTCTTTACATTAATGTCATAGCCTAGC
108916102 TATGGTCTTACATATAAACATGCCATGGTCCAACCATGGTCTTATCCGGCAAATCATCCTTTACC
261 TATGGTCTTACATATAAACATGCCATGGTCCAACCATGGTCTTATCCGGCAAATCATCCTTTACC
108916167 A
326 A
108916168 CAGAATCAAAGAATGGCTTACGAGTATGAGTACATCGTTTTATTTATCCCATAGTCCAATTATGG
1 CAGAATCAAAGAATGGCTTACGAGTATGAGTACATCGTTTTATTTATCCCATAGTCCAATTATGG
*
108916233 TCTTACATGTATGTTGTTATGGCCCTGCCATGGTCTTACATTATCAGTGCCATAACCCAGTTATG
66 TCTTACATGTATGTTGTTATGGCCCTGCCATGGTCTTACATTAGCAGTGCCATAACCCAGTTATG
108916298 GTATTATTATCAGATTGCAATAGCCTATTATCACTGCCTTGGTCCAACCATGGTCTTATGTTCGT
131 GTATTATTATCAGATTGCAATAGCCTATTATCACTGCCTTGGTCCAACCATGGTCTTATGTTCGT
108916363 AGTGCCATAACCCAATTATGGTCTTATCCATTAATTCATTCTTTACATTAATGTCATAGCCTAGC
196 AGTGCCATAACCCAATTATGGTCTTATCCATTAATTCATTCTTTACATTAATGTCATAGCCTAGC
108916428 TATGGTCTTACATATAAACATGCCATGGTCCAACCATGGTCTTATCCGGCAAATCATCCTTTACC
261 TATGGTCTTACATATAAACATGCCATGGTCCAACCATGGTCTTATCCGGCAAATCATCCTTTACC
108916493 A
326 A
108916494 CAGAA
1 CAGAA
108916499 CGAATGTACT
Statistics
Matches: 325, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
326 325 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (326 bp):
CAGAATCAAAGAATGGCTTACGAGTATGAGTACATCGTTTTATTTATCCCATAGTCCAATTATGG
TCTTACATGTATGTTGTTATGGCCCTGCCATGGTCTTACATTAGCAGTGCCATAACCCAGTTATG
GTATTATTATCAGATTGCAATAGCCTATTATCACTGCCTTGGTCCAACCATGGTCTTATGTTCGT
AGTGCCATAACCCAATTATGGTCTTATCCATTAATTCATTCTTTACATTAATGTCATAGCCTAGC
TATGGTCTTACATATAAACATGCCATGGTCCAACCATGGTCTTATCCGGCAAATCATCCTTTACC
A
Found at i:108932593 original size:17 final size:17
Alignment explanation
Indices: 108932571--108932608 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
108932561 AGTAGGGAAA
108932571 GAAAGAAAGAA-AAAAGG
1 GAAAGAAA-AAGAAAAGG
*
108932588 GAAAGAAAAAGGAAAGG
1 GAAAGAAAAAGAAAAGG
108932605 GAAA
1 GAAA
108932609 ATTAGGGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAGAAAAGG
Found at i:108933432 original size:6 final size:6
Alignment explanation
Indices: 108933421--108933455 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
108933411 TCTGTGTACC
* *
108933421 GTTACT GTTACT GTTACT GTTACT ATTATT GTTAC
1 GTTACT GTTACT GTTACT GTTACT GTTACT GTTAC
108933456 CCTTATGGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.51
Consensus pattern (6 bp):
GTTACT
Found at i:108936094 original size:17 final size:17
Alignment explanation
Indices: 108936072--108936108 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
108936062 GATAATTTTA
*
108936072 AATCTTTTGTTAATGTT
1 AATCTTTTGTTAATATT
108936089 AATCTTTTGTTAATATT
1 AATCTTTTGTTAATATT
108936106 AAT
1 AAT
108936109 GAACATGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (17 bp):
AATCTTTTGTTAATATT
Found at i:108936917 original size:168 final size:167
Alignment explanation
Indices: 108936622--108936930 Score: 530
Period size: 168 Copynumber: 1.8 Consensus size: 167
108936612 GGAGGCAACC
108936622 CGAGTGTTAAATTTTGCTAATTCTTTTAATTCCATTGCATACTTATTTAAAATCTTAAAATTAAC
1 CGAGTGTTAAATTTTGCTAATTCTTTTAATTCCATTGCATACTTATTTAAAATCTTAAAATTAAC
* * *
108936687 AAAAAATGTGTGTTTTTGACCTACACAGCCTGGGCACACAGGTGTGTCCCAGGCCATGTGCACAA
66 AAAAAATGTGTGTTTTTGACCCACACAGCCTGGGAACACAGGCGTGTCCCAGGCCATGTGCACAA
108936752 TGGGCATTTGACAGAGTTGCATGGCTTGGCAAAATGG
131 TGGGCATTTGACAGAGTTGCATGGCTTGGCAAAATGG
* * *
108936789 CGAGTGTTAACTTTTTTCTAATTCTTTTAATTCCATTGCATACTTATTTAAAATCTTAAAATTTT
1 CGAGTGTTAA-ATTTTGCTAATTCTTTTAATTCCATTGCATACTTATTTAAAATCTTAAAA-TTA
*
108936854 A-AAAAAATGTGTGTTTTTGACCCACACAGCCTGGGAACACAGGCGTGTCCCAGGCCGTGTGCAC
64 ACAAAAAATGTGTGTTTTTGACCCACACAGCCTGGGAACACAGGCGTGTCCCAGGCCATGTGCAC
108936918 AATGGGCATTTGA
129 AATGGGCATTTGA
108936931 TAGTGAGCTA
Statistics
Matches: 133, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
167 10 0.08
168 120 0.90
169 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (167 bp):
CGAGTGTTAAATTTTGCTAATTCTTTTAATTCCATTGCATACTTATTTAAAATCTTAAAATTAAC
AAAAAATGTGTGTTTTTGACCCACACAGCCTGGGAACACAGGCGTGTCCCAGGCCATGTGCACAA
TGGGCATTTGACAGAGTTGCATGGCTTGGCAAAATGG
Found at i:108936974 original size:30 final size:30
Alignment explanation
Indices: 108936940--108937006 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
108936930 ATAGTGAGCT
108936940 ACACGGCGTGGCAACATGGCCATGTGACCC
1 ACACGGCGTGGCAACATGGCCATGTGACCC
* * *
108936970 ACACGACTTGGCAATATGGCCATGTGACCC
1 ACACGGCGTGGCAACATGGCCATGTGACCC
108937000 ACACGGC
1 ACACGGC
108937007 CTAGACACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.33, G:0.27, T:0.15
Consensus pattern (30 bp):
ACACGGCGTGGCAACATGGCCATGTGACCC
Found at i:108937599 original size:29 final size:28
Alignment explanation
Indices: 108937565--108937641 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 28
108937555 TTTTCTTTAT
108937565 TTTATTTTTGATTTATTTCTGTA-TTATTA
1 TTTATTTTTGATTTATTT-T-TATTTATTA
*
108937594 TTTATTATATT-ATTTATTTTTATTTTTTA
1 TTTATT-T-TTGATTTATTTTTATTTATTA
*
108937623 TCTATTTTATGATTTATTT
1 TTTATTTT-TGATTTATTT
108937642 ATTTTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
27 1 0.02
28 4 0.10
29 25 0.61
30 9 0.22
31 2 0.05
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.71
Consensus pattern (28 bp):
TTTATTTTTGATTTATTTTTATTTATTA
Found at i:108937600 original size:7 final size:7
Alignment explanation
Indices: 108937588--108937657 Score: 51
Period size: 7 Copynumber: 10.1 Consensus size: 7
108937578 TATTTCTGTA
108937588 TTATTAT
1 TTATTAT
108937595 TTATTA-
1 TTATTAT
108937601 -TATTAT
1 TTATTAT
108937607 TTATT-T
1 TTATTAT
*
108937613 TTATTTT
1 TTATTAT
108937620 TTATCTATT
1 TTAT-TA-T
*
108937629 TTATGAT
1 TTATTAT
108937636 TTATTTAT
1 TTA-TTAT
108937644 TT-TGT-T
1 TTAT-TAT
108937650 TTATTAT
1 TTATTAT
108937657 T
1 T
108937658 CTTATTCTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
5 5 0.10
6 11 0.22
7 23 0.45
8 7 0.14
9 5 0.10
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.73
Consensus pattern (7 bp):
TTATTAT
Found at i:108937611 original size:22 final size:23
Alignment explanation
Indices: 108937586--108937645 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
108937576 TTTATTTCTG
108937586 TATTATTATTTATTATAT-TA-TT
1 TATTATTATTTATT-TATCTATTT
*
108937608 TATTTTTATTT-TTTATCTATTT
1 TATTATTATTTATTTATCTATTT
*
108937630 TATGATTTATTTATTT
1 TATTA-TTATTTATTT
108937646 TGTTTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 3 0.10
21 4 0.13
22 15 0.48
23 6 0.19
24 3 0.10
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TATTATTATTTATTTATCTATTT
Found at i:108937638 original size:41 final size:40
Alignment explanation
Indices: 108937565--108937644 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 40
108937555 TTTTCTTTAT
* *
108937565 TTTATTTTTGATTTATTTCTGTATTATTATTTATTATATTA
1 TTTATTTTTGATTTATTTCTATATTATGATTTATT-TATTA
* *
108937606 TTTATTTTT-ATTTTTTATCTATTTTATGATTTATTTATT
1 TTTATTTTTGATTTATT-TCTATATTATGATTTATTTATT
108937645 TTGTTTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 10 0.29
41 24 0.71
ACGTcount: A:0.23, C:0.03, G:0.04, T:0.71
Consensus pattern (40 bp):
TTTATTTTTGATTTATTTCTATATTATGATTTATTTATTA
Found at i:108937657 original size:29 final size:29
Alignment explanation
Indices: 108937561--108937662 Score: 82
Period size: 30 Copynumber: 3.3 Consensus size: 29
108937551 ACCCTTTTCT
* * *
108937561 TTATTTTATTTTTGATTTATTTCTGTATTA
1 TTATTTTATATTT-ATTTATTTATGTTTTA
*
108937591 TTA-TTTATTATATTATTTATTTTTATTTTTTA
1 TTATTTTA-TAT-TTATTTA--TTTATGTTTTA
108937623 TCTATTTTATGATTTATTTATTT-TGTTTTA
1 T-TATTTTAT-ATTTATTTATTTATGTTTTA
108937653 TTATTCTTAT
1 TTATT-TTAT
108937663 TCTTAGATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
29 8 0.14
30 21 0.36
31 5 0.08
32 9 0.15
33 10 0.17
34 6 0.10
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.72
Consensus pattern (29 bp):
TTATTTTATATTTATTTATTTATGTTTTA
Found at i:108937745 original size:12 final size:12
Alignment explanation
Indices: 108937713--108937753 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
108937703 AGTTATATTT
108937713 CTATT-TTTTTA
1 CTATTATTTTTA
*
108937724 GCT-TTTTTTTTA
1 -CTATTATTTTTA
108937736 CTATTATTTTTA
1 CTATTATTTTTA
108937748 CTATTA
1 CTATTA
108937754 CCATTAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 4 0.15
12 22 0.85
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (12 bp):
CTATTATTTTTA
Found at i:108937805 original size:12 final size:12
Alignment explanation
Indices: 108937788--108937854 Score: 62
Period size: 12 Copynumber: 5.3 Consensus size: 12
108937778 AGTTTATTTC
*
108937788 TTTTCTTTTTCT
1 TTTTCTTTTTAT
108937800 TTTTCTTTTTAT
1 TTTTCTTTTTAT
* *
108937812 CTTTATTTTTAT
1 TTTTCTTTTTAT
*
108937824 TTTTGTTTTTAAT
1 TTTTCTTTTT-AT
*
108937837 TGCTTTTTTTTTAT
1 T--TTTCTTTTTAT
108937851 TTTT
1 TTTT
108937855 TTAGACATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
12 32 0.70
13 3 0.07
14 3 0.07
15 8 0.17
ACGTcount: A:0.09, C:0.07, G:0.03, T:0.81
Consensus pattern (12 bp):
TTTTCTTTTTAT
Found at i:108942526 original size:27 final size:27
Alignment explanation
Indices: 108942475--108942526 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
108942465 AATTTAGCCA
*
108942475 TTTTTATTTTATTACATTTTGTTTTTG
1 TTTTTATTTTATTACAATTTGTTTTTG
*
108942502 TTTTTGTTTTATTACTAATTT-TTTT
1 TTTTTATTTTATTAC-AATTTGTTTT
108942527 CTTTTATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (27 bp):
TTTTTATTTTATTACAATTTGTTTTTG
Found at i:108959104 original size:16 final size:17
Alignment explanation
Indices: 108959080--108959113 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
108959070 TAATAACAAG
*
108959080 ATTCGTCTTAGGT-TTC
1 ATTCCTCTTAGGTATTC
108959096 ATTCCTCTTAGGTATTC
1 ATTCCTCTTAGGTATTC
108959113 A
1 A
108959114 GGGGATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (17 bp):
ATTCCTCTTAGGTATTC
Found at i:108967978 original size:16 final size:17
Alignment explanation
Indices: 108967954--108967987 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
108967944 TAATAACAAG
*
108967954 ATTCGTCTTAGGT-TTC
1 ATTCCTCTTAGGTATTC
108967970 ATTCCTCTTAGGTATTC
1 ATTCCTCTTAGGTATTC
108967987 A
1 A
108967988 GGGGATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (17 bp):
ATTCCTCTTAGGTATTC
Found at i:108971427 original size:20 final size:20
Alignment explanation
Indices: 108971402--108971448 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
108971392 ATTCTAATAT
108971402 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
108971422 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
108971442 ACATGAT
1 ACATGAT
108971449 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:108971557 original size:26 final size:24
Alignment explanation
Indices: 108971495--108971560 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 24
108971485 AAGGAAGTGC
*
108971495 AAAAGGGCTATGCCCCAGTTACAGA
1 AAAAGGGCTTTGCCCCAGTTACA-A
108971520 AAAAGGGCTTTGCCCCAGTTTATC-A
1 AAAAGGGCTTTGCCCCAG-TTA-CAA
108971545 AAAAGGGCTTTTGCCC
1 AAAAGGGC-TTTGCCC
108971561 TGGTTATTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
25 26 0.70
26 10 0.27
27 1 0.03
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTACAA
Found at i:108971823 original size:31 final size:31
Alignment explanation
Indices: 108971785--108971868 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
108971775 TTGTTACAGT
108971785 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
108971816 AAAGGCTTTGTCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
108971847 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
108971869 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:108973030 original size:6 final size:6
Alignment explanation
Indices: 108973015--108973070 Score: 94
Period size: 6 Copynumber: 9.3 Consensus size: 6
108973005 ATTGAGTCCA
* *
108973015 TTTATC TTTATT TTTATC TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
108973063 TTTATT TT
1 TTTATT TT
108973071 GTCTTTATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:108973083 original size:18 final size:16
Alignment explanation
Indices: 108973014--108973084 Score: 61
Period size: 18 Copynumber: 4.1 Consensus size: 16
108973004 CATTGAGTCC
*
108973014 ATTTATCTTTATTTTT
1 ATTTTTCTTTATTTTT
*
108973030 ATCTTTATTTTTATTTTT
1 AT-TTT-TCTTTATTTTT
*
108973048 ATTTTTATTTTTATTTTT
1 A-TTTT-TCTTTATTTTT
108973066 ATTTTGTCTTTATATTTT
1 ATTTT-TCTTTAT-TTTT
108973084 A
1 A
108973085 AACTCTATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
16 2 0.04
17 12 0.26
18 32 0.68
19 1 0.02
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (16 bp):
ATTTTTCTTTATTTTT
Found at i:108976273 original size:61 final size:58
Alignment explanation
Indices: 108976161--108976286 Score: 189
Period size: 61 Copynumber: 2.1 Consensus size: 58
108976151 ATCACTTTAA
* * *
108976161 TATTAAATTAATATAATACTTATTAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTAAATATTAAATC
*
108976219 TATTAAATTAATAGAATATTTATCTGCAAGATAAATATTAAATTAAATTAAATATTAAATC
1 TATTAAATTAATAGAATACTTAT-T--AAGATAAATATTAAATTAAATTAAATATTAAATC
108976280 TATTAAA
1 TATTAAA
108976287 ACAATATTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
58 21 0.34
59 1 0.02
61 39 0.64
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTAAATATTAAATC
Found at i:108978043 original size:39 final size:38
Alignment explanation
Indices: 108977987--108978086 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 38
108977977 CGAATATAAT
* * * *
108977987 AATTATAATTACCATAATTATAATAATGTTTGACCAAA
1 AATTACAATTACAATAATTATAATAATATTCGACCAAA
* **
108978025 AACTTACAATTACAATAATTATAATAATATTCGATCGTA
1 AA-TTACAATTACAATAATTATAATAATATTCGACCAAA
*
108978064 AATTATAATTACAATAATTATAA
1 AATTACAATTACAATAATTATAA
108978087 CAAGGATTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 22 0.42
39 31 0.58
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (38 bp):
AATTACAATTACAATAATTATAATAATATTCGACCAAA
Found at i:108979274 original size:5 final size:5
Alignment explanation
Indices: 108979264--108979291 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
108979254 GTAACTGTGA
108979264 AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAA
108979292 AAGCACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:108983721 original size:5 final size:5
Alignment explanation
Indices: 108983711--108983745 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
108983701 CCAATTTGTG
108983711 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
108983746 AGCACACAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:108985297 original size:11 final size:12
Alignment explanation
Indices: 108985268--108985296 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
108985258 AGCAAAATAG
108985268 GTTTTTAGCGGC
1 GTTTTTAGCGGC
108985280 GTTTTTAGCGGC
1 GTTTTTAGCGGC
108985292 GTTTT
1 GTTTT
108985297 AATAGAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.14, G:0.31, T:0.48
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:108985551 original size:113 final size:114
Alignment explanation
Indices: 108985341--108985561 Score: 257
Period size: 113 Copynumber: 1.9 Consensus size: 114
108985331 GCGCTTCACC
* *
108985341 AAAACGCCGCAAAAGATCAAGCATTAGCGGCATTTTAAATAAAGCACCGCTAAAAGATTCAGCAA
1 AAAACGCCACAAAAGATCAAGCATTAGCGGCATTTTAAATAAAGCACCGCTAAAAGATTAAGCAA
*** * * * *
108985406 AACGACGTCGTTTACGTTGAGTTTCCACGGAATTAGTGGCGCTTAGGGA
66 AACGACGTCGTTTAAACTAAGGTTACACGGAATTAGCGGCGCTTAGGGA
* * * * * **
108985455 AAAACGCCACAAAATATC-AGCATTAGCGGCGTTTTAAGA-AAAGCGCCGCTACAATATTAAGGT
1 AAAACGCCACAAAAGATCAAGCATTAGCGGCATTTTAA-ATAAAGCACCGCTAAAAGATTAAGCA
* *
108985518 TAACGACGTCGTTTAAACTAAGGTTACATGGAATTAGCGGCGCT
65 AAACGACGTCGTTTAAACTAAGGTTACACGGAATTAGCGGCGCT
108985562 AAAAGGAAAA
Statistics
Matches: 88, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
113 71 0.81
114 17 0.19
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (114 bp):
AAAACGCCACAAAAGATCAAGCATTAGCGGCATTTTAAATAAAGCACCGCTAAAAGATTAAGCAA
AACGACGTCGTTTAAACTAAGGTTACACGGAATTAGCGGCGCTTAGGGA
Found at i:108986272 original size:15 final size:15
Alignment explanation
Indices: 108986244--108986273 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
108986234 ATTATTTAAA
*
108986244 GGTTTAGGGTTTATG
1 GGTTTAGGGATTATG
108986259 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
108986274 TTTATGGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:108986338 original size:36 final size:36
Alignment explanation
Indices: 108986275--108986370 Score: 124
Period size: 36 Copynumber: 2.7 Consensus size: 36
108986265 GGGATTATGT
* *
108986275 TTATGGCTTATGGTTTAAGGGTT-GGGGTTTAAAGG
1 TTATGGGTTATGGTTTAGGGGTTAGGGGTTTAAAGG
**
108986310 TTATGGGTTAGTGG-TTAGGGGTTAGGGGTTTATGGG
1 TTATGGGTTA-TGGTTTAGGGGTTAGGGGTTTAAAGG
108986346 TTATGGGTTAATGGTTTAGGGGTTA
1 TTATGGGTT-ATGGTTTAGGGGTTA
108986371 ATGCTTAGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
35 17 0.32
36 25 0.47
37 11 0.21
ACGTcount: A:0.18, C:0.01, G:0.41, T:0.41
Consensus pattern (36 bp):
TTATGGGTTATGGTTTAGGGGTTAGGGGTTTAAAGG
Found at i:108986348 original size:15 final size:15
Alignment explanation
Indices: 108986310--108986383 Score: 71
Period size: 15 Copynumber: 5.1 Consensus size: 15
108986300 GGTTTAAAGG
*
108986310 TTATGGGTTAGTGG-
1 TTATGGGTTAGGGGT
*
108986324 TTAGGGGTTAGGGGT
1 TTATGGGTTAGGGGT
*
108986339 TTATGGGTTATGGGT
1 TTATGGGTTAGGGGT
* *
108986354 TAATGGTTTAGGGGT
1 TTATGGGTTAGGGGT
* *
108986369 TAAT-GCTTAGGGGT
1 TTATGGGTTAGGGGT
108986383 T
1 T
108986384 ATTATTTTGT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
14 22 0.43
15 29 0.57
ACGTcount: A:0.16, C:0.01, G:0.42, T:0.41
Consensus pattern (15 bp):
TTATGGGTTAGGGGT
Found at i:108986353 original size:22 final size:22
Alignment explanation
Indices: 108986331--108986383 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
108986321 TGGTTAGGGG
*
108986331 TTAGGGGTTTATGGGTTATGGG
1 TTAGGGGTTTAGGGGTTATGGG
** *
108986353 TTAATGGTTTAGGGGTTAAT-GC
1 TTAGGGGTTTAGGGGTT-ATGGG
108986375 TTAGGGGTT
1 TTAGGGGTT
108986384 ATTATTTTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 22 0.92
23 2 0.08
ACGTcount: A:0.17, C:0.02, G:0.40, T:0.42
Consensus pattern (22 bp):
TTAGGGGTTTAGGGGTTATGGG
Found at i:108986488 original size:100 final size:100
Alignment explanation
Indices: 108986381--108986726 Score: 320
Period size: 100 Copynumber: 3.4 Consensus size: 100
108986371 ATGCTTAGGG
* * *
108986381 GTTATTATTTTGTGGTTTAA-GATTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGT
1 GTTATTATTTTGTGGTTTAAGGA-TCAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGT
108986445 TTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
65 TTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
* * ** * *
108986481 GTTATTATTTTGTGGTTTAAGGATC-AGGAGATATAGTTTAGGGT--TATGATTAATTCATACA-
1 GTTATTATTTTGTGGTTTAAGGATCAAGG-GATATAGTTTAGGGTACT-TTAGTAGGTGATATAG
** *
108986542 TTTTGTGG-TTAAGGTTTAGGGGTTATTG-TT--TT-GT
64 TTTAATGGTTTAAGGTTTA-GAG-TATTGATTAATTAGT
* * * * *
108986576 GGT-TTATGGTTAG-GAGATATAGTTCAGGGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGGT
1 GTTATTAT--TTTGTG-G---T--TT-AAGGATCAAGGGATATAGTTTAGGGTACTTTAGTAGGT
108986639 GATATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
57 GATATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
*
108986683 GTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTTAGGGT
1 GTTATTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGT
108986727 TATGATTAAT
Statistics
Matches: 189, Mismatches: 32, Indels: 50
0.70 0.12 0.18
Matches are distributed among these distances:
94 4 0.02
95 5 0.03
96 6 0.03
97 10 0.05
98 11 0.06
99 16 0.08
100 59 0.31
101 6 0.03
102 19 0.10
103 18 0.10
104 11 0.06
105 10 0.05
106 5 0.03
107 5 0.03
108 4 0.02
ACGTcount: A:0.26, C:0.02, G:0.27, T:0.44
Consensus pattern (100 bp):
GTTATTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGTT
TAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
Found at i:108986754 original size:202 final size:201
Alignment explanation
Indices: 108986403--108986889 Score: 807
Period size: 202 Copynumber: 2.4 Consensus size: 201
108986393 TGGTTTAAGA
108986403 TTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAGTA
1 TTTAGGGGATATAGTTTAGGGTACTTTAGTA-GGGATATAGTTTAATGGTTTAAGGTTTAGAGTA
*
108986468 TTGATTAATTAGTGTTATTATTTTGTGGTTTAAGGATCAGGAGATATAGTTTAGGGTTATGATTA
65 TTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAGGAGATATAGTTTAGGGTTATGATTA
*
108986533 ATTCATACATTTTGTGGTTAAGGTTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGAGATATAG
130 ATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGAGATATAG
108986598 TTCAGGG
195 TTCAGGG
*
108986605 TTTAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGTTTAATGGTTTAAGGTTTAGAGTA
1 TTTAGGGGATATAGTTTAGGGTACTTTAGTAGG-GATATAGTTTAATGGTTTAAGGTTTAGAGTA
108986670 TTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGG-GATATAGTTTAGGGTTATGATT
65 TTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATC-AGGAGATATAGTTTAGGGTTATGATT
*
108986734 AATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATATA
129 AATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGAGATATA
*
108986799 GTTTAGGG
194 GTTCAGGG
* ** * *
108986807 TTTAGGGGATATACTTTAGGGTTTAAGGTTA-TAAGGATATAGTTTAATGGTTTAAGGTTAAGAG
1 TTTAGGGGATATAGTTTAGGG--T-ACTTTAGTAGGGATATAGTTTAATGGTTTAAGGTTTAGAG
*
108986871 TTTTGATTAATTAGTGTTA
63 TATTGATTAATTAGTGTTA
108986890 ATAATATTAA
Statistics
Matches: 268, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
201 2 0.01
202 209 0.78
203 49 0.18
204 4 0.01
205 4 0.01
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (201 bp):
TTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGATATAGTTTAATGGTTTAAGGTTTAGAGTAT
TGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAGGAGATATAGTTTAGGGTTATGATTAA
TTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGAGATATAGT
TCAGGG
Found at i:108986790 original size:28 final size:29
Alignment explanation
Indices: 108986744--108986810 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 29
108986734 AATTCATACA
* *
108986744 TTTTGTGG-TTAAGGCTTAGGGGTTATTG
1 TTTTGTGGTTTAAGGCTTAGGGGATATAG
*
108986772 TTTTGTGGTTTATGG-TTAGGGGATATAG
1 TTTTGTGGTTTAAGGCTTAGGGGATATAG
*
108986800 TTTAG-GGTTTA
1 TTTTGTGGTTTA
108986811 GGGGATATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.18
28 23 0.68
29 5 0.15
ACGTcount: A:0.16, C:0.01, G:0.34, T:0.48
Consensus pattern (29 bp):
TTTTGTGGTTTAAGGCTTAGGGGATATAG
Found at i:108986813 original size:21 final size:21
Alignment explanation
Indices: 108986779--108986831 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
108986769 TTGTTTTGTG
*
108986779 GTTTATGG-TTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
108986799 GTTTAGGGTTTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
*
108986820 CTTTAGGGTTTA
1 GTTTAGGGTTTA
108986832 AGGTTATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.42
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGGATATA
Found at i:108989788 original size:14 final size:13
Alignment explanation
Indices: 108989765--108989794 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
108989755 ATTACTATAA
108989765 TAATTATATGAAG
1 TAATTATATGAAG
108989778 TAATATATATGAAG
1 TAAT-TATATGAAG
108989792 TAA
1 TAA
108989795 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:108990480 original size:14 final size:15
Alignment explanation
Indices: 108990461--108990570 Score: 78
Period size: 17 Copynumber: 6.5 Consensus size: 15
108990451 AATCTTCAAT
108990461 GATATG-CAATCTTA
1 GATATGACAATCTTA
108990475 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
108990492 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
*
108990510 GATATTATATGCAATCTTA
1 GATA-T-GA--CAATCTTA
108990529 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
108990546 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
108990564 GATATGA
1 GATATGA
108990571 TATGCAATCT
Statistics
Matches: 81, Mismatches: 2, Indels: 22
0.77 0.02 0.21
Matches are distributed among these distances:
14 6 0.07
15 2 0.02
17 28 0.35
18 28 0.35
19 16 0.20
20 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:108990505 original size:35 final size:36
Alignment explanation
Indices: 108990459--108990584 Score: 186
Period size: 35 Copynumber: 3.5 Consensus size: 36
108990449 ATAATCTTCA
108990459 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
108990495 ATGAT-TGCAATCTTAGATATTATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
*
108990532 ATGATA--CAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
108990567 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
108990585 AGATATGATT
Statistics
Matches: 81, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
35 35 0.43
36 19 0.23
37 27 0.33
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:108990520 original size:54 final size:54
Alignment explanation
Indices: 108990459--108990584 Score: 243
Period size: 54 Copynumber: 2.3 Consensus size: 54
108990449 ATAATCTTCA
108990459 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
*
108990513 ATTATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
108990567 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
108990585 AGATATGATT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:108990591 original size:17 final size:19
Alignment explanation
Indices: 108990459--108990584 Score: 201
Period size: 19 Copynumber: 6.9 Consensus size: 19
108990449 ATAATCTTCA
108990459 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
108990478 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
108990495 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
108990513 ATTATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
108990532 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
108990549 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
108990567 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
108990585 AGATATGATT
Statistics
Matches: 99, Mismatches: 2, Indels: 12
0.88 0.02 0.11
Matches are distributed among these distances:
17 32 0.32
18 31 0.31
19 36 0.36
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:108990610 original size:22 final size:22
Alignment explanation
Indices: 108990459--108990607 Score: 94
Period size: 19 Copynumber: 7.8 Consensus size: 22
108990449 ATAATCTTCA
108990459 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
108990478 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
108990495 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
108990513 ATTATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
108990532 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
108990549 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
108990567 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
108990589 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
108990608 GATTTAATTT
Statistics
Matches: 116, Mismatches: 4, Indels: 16
0.85 0.03 0.12
Matches are distributed among these distances:
17 32 0.28
18 31 0.27
19 33 0.28
22 8 0.07
23 12 0.10
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:108993495 original size:15 final size:15
Alignment explanation
Indices: 108993475--108993504 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
108993465 TCACATAATT
*
108993475 TACATAATTTACATA
1 TACATAACTTACATA
108993490 TACATAACTTACATA
1 TACATAACTTACATA
108993505 ATTTAAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (15 bp):
TACATAACTTACATA
Found at i:108993528 original size:30 final size:33
Alignment explanation
Indices: 108993462--108993793 Score: 177
Period size: 30 Copynumber: 10.4 Consensus size: 33
108993452 GTTCACCAGC
* * *
108993462 AACTCACATAATTTACATAATTTACAT-A-TACAT
1 AACTTACATAATTT--ATAAGTTACATAATTTCAT
108993495 AACTTACATAATTTA-AAGTT-CA-AATTTCAT
1 AACTTACATAATTTATAAGTTACATAATTTCAT
* **
108993525 AACTTACATAATTTACTTAACTTACATAA-GACAT
1 AACTTACATAATTTA--TAAGTTACATAATTTCAT
* *
108993559 GACTTACATAATTTA-AAGAT-CA-AATTTCAT
1 AACTTACATAATTTATAAGTTACATAATTTCAT
* * ** *
108993589 AACTTATATGATACATAACTTACATAATTT-A-
1 AACTTACATAATTTATAAGTTACATAATTTCAT
*
108993620 AA--GACCA-AATTTCATAAGTTACATAATTTACAT
1 AACTTA-CATAATTT-ATAAGTTACATAATTT-CAT
108993653 AACTTACATAATAATT-TAAAGTT-CA-AATTTCAT
1 AACTTACATAAT--TTAT-AAGTTACATAATTTCAT
** * * *
108993686 AACTTACATAATACATAACTTGCATAA-TACAT
1 AACTTACATAATTTATAAGTTACATAATTTCAT
* *
108993718 AACTTACATAATTTA-AAGAT-CA-AAATTCAT
1 AACTTACATAATTTATAAGTTACATAATTTCAT
* * * *
108993748 GATTTACATAATTTACATAACTTACATAA-TACAT
1 AACTTACATAATTT--ATAAGTTACATAATTTCAT
108993782 AACTTACATAAT
1 AACTTACATAAT
108993794 ACATGACTTA
Statistics
Matches: 227, Mismatches: 41, Indels: 61
0.69 0.12 0.19
Matches are distributed among these distances:
29 10 0.04
30 72 0.32
31 16 0.07
32 25 0.11
33 44 0.19
34 42 0.19
35 11 0.05
36 5 0.02
37 2 0.01
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.36
Consensus pattern (33 bp):
AACTTACATAATTTATAAGTTACATAATTTCAT
Found at i:108993582 original size:64 final size:64
Alignment explanation
Indices: 108993462--108993615 Score: 215
Period size: 64 Copynumber: 2.5 Consensus size: 64
108993452 GTTCACCAGC
* * * *
108993462 AACTCACATAATTTACATAATTTACAT-ATACATAACTTACATAATTTAAAGTTCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAAGACATAACTTACATAATTTAAAGATCAAATTTCAT
* *
108993525 AACTTACATAATTTACTTAACTTACATAAGACATGACTTACATAATTTAAAGATCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAAGACATAACTTACATAATTTAAAGATCAAATTTCAT
* *
108993589 AACTTATATGA--TACATAACTTACATAA
1 AACTTACATAATTTACATAACTTACATAA
108993616 TTTAAAGACC
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
62 15 0.19
63 24 0.30
64 42 0.52
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.36
Consensus pattern (64 bp):
AACTTACATAATTTACATAACTTACATAAGACATAACTTACATAATTTAAAGATCAAATTTCAT
Found at i:108993589 original size:21 final size:21
Alignment explanation
Indices: 108993565--108993636 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 21
108993555 ACATGACTTA
108993565 CATAATTTAAAGATCAAATTT
1 CATAATTTAAAGATCAAATTT
* * *
108993586 CATAACTTATATGATACATAACTTA
1 CATAATTTA-AAGAT-CA-AA-TTT
*
108993611 CATAATTTAAAGACCAAATTT
1 CATAATTTAAAGATCAAATTT
108993632 CATAA
1 CATAA
108993637 GTTACATAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
21 15 0.38
22 6 0.15
23 4 0.10
24 5 0.12
25 10 0.25
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.35
Consensus pattern (21 bp):
CATAATTTAAAGATCAAATTT
Found at i:108993610 original size:46 final size:46
Alignment explanation
Indices: 108993542--108993713 Score: 227
Period size: 46 Copynumber: 3.6 Consensus size: 46
108993532 ATAATTTACT
* *
108993542 TAACTTACATAAGACATGACTTACATAATTTAAAGATCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* * *
108993588 TAACTTATATGATACATAACTTACATAATTTAAAGACCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* *
108993634 TAAGTTACATAATTTACATAACTTACATAATAATTTAAAGTTCAAATTTCA
1 TAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTTCA
*
108993685 TAACTTACATAATACATAACTTGCATAAT
1 TAACTTACATAATACATAACTTACATAAT
108993714 ACATAACTTA
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
46 55 0.50
48 12 0.11
49 11 0.10
51 31 0.28
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (46 bp):
TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
Found at i:108993682 original size:110 final size:113
Alignment explanation
Indices: 108993467--108993793 Score: 400
Period size: 113 Copynumber: 2.9 Consensus size: 113
108993457 CCAGCAACTC
* *
108993467 ACATAATTTACATAATTTACATATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTAC
1 ACATAATTT-CATAACTTACATATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTAC
* * * *
108993532 ATAATTTACTTAACTTACATAAGACATGACTTACATAATTT-A-AAGAT
65 ATAATTTACATAACTTACATAATACATAACTTACATAATTTCATAACAT
* * *
108993579 -CA-AATTTCATAACTTATATGATACATAACTTACATAATTTAAAGACCAAATTTCATAAGTTAC
1 ACATAATTTCATAACTTACAT-ATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTAC
* *
108993642 ATAATTTACATAACTTACATAATA-ATTTAAAGTT-CA-AATTTCATAACTT
65 ATAATTTACATAACTTACATAATACA--T-AACTTACATAATTTCATAACAT
* * * * *
108993691 ACATAA-TACATAACTTGCATAATACATAACTTACATAATTTAAAGATCAAAATTCATGATTTAC
1 ACATAATTTCATAACTTACAT-ATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTAC
108993755 ATAATTTACATAACTTACATAATACATAACTTACATAAT
65 ATAATTTACATAACTTACATAATACATAACTTACATAAT
108993794 ACATGACTTA
Statistics
Matches: 184, Mismatches: 20, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
109 11 0.06
110 72 0.39
111 10 0.05
112 9 0.05
113 79 0.43
114 3 0.02
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (113 bp):
ACATAATTTCATAACTTACATATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACA
TAATTTACATAACTTACATAATACATAACTTACATAATTTCATAACAT
Found at i:108993704 original size:16 final size:16
Alignment explanation
Indices: 108993683--108993808 Score: 130
Period size: 16 Copynumber: 7.9 Consensus size: 16
108993673 GTTCAAATTT
108993683 CATAACTTACATAATA
1 CATAACTTACATAATA
*
108993699 CATAACTTGCATAATA
1 CATAACTTACATAATA
*
108993715 CATAACTTACATAATT
1 CATAACTTACATAATA
* ** * *
108993731 TA-AAGAT-CAAAATT
1 CATAACTTACATAATA
* *
108993745 CATGATTTACATAATTTA
1 CATAACTTACATAA--TA
108993763 CATAACTTACATAATA
1 CATAACTTACATAATA
108993779 CATAACTTACATAATA
1 CATAACTTACATAATA
*
108993795 CATGACTTACATAA
1 CATAACTTACATAA
108993809 CTTAATTATA
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
14 7 0.08
15 5 0.06
16 65 0.72
18 13 0.14
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:108993805 original size:9 final size:9
Alignment explanation
Indices: 108993462--108993812 Score: 103
Period size: 9 Copynumber: 39.7 Consensus size: 9
108993452 GTTCACCAGC
*
108993462 AACTCACAT
1 AACTTACAT
*
108993471 AATTTACAT
1 AACTTACAT
*
108993480 AATTTACAT
1 AACTTACAT
108993489 -A--TACAT
1 AACTTACAT
108993495 AACTTACAT
1 AACTTACAT
* *
108993504 AATTTAAAGTT
1 AACTTACA--T
* *
108993515 CAAATTTCAT
1 -AACTTACAT
108993525 AACTTACAT
1 AACTTACAT
* *
108993534 AATTTACTT
1 AACTTACAT
108993543 AACTTACAT
1 AACTTACAT
*
108993552 AA--GACAT
1 AACTTACAT
*
108993559 GACTTACAT
1 AACTTACAT
* *
108993568 AATTTAAAGAT
1 AACTT--ACAT
* *
108993579 CAAATTTCAT
1 -AACTTACAT
*
108993589 AACTTATAT
1 AACTTACAT
*
108993598 GA--TACAT
1 AACTTACAT
108993605 AACTTACAT
1 AACTTACAT
* * *
108993614 AATTTAAAGACC
1 AACTT--ACA-T
* *
108993626 AAATTTCAT
1 AACTTACAT
*
108993635 AAGTTACAT
1 AACTTACAT
*
108993644 AATTTACAT
1 AACTTACAT
108993653 AACTTACAT
1 AACTTACAT
* **
108993662 AA-TAATTT
1 AACTTACAT
*
108993670 AAAGTT-CA-
1 -AACTTACAT
*
108993678 AA-TTTCAT
1 AACTTACAT
108993686 AACTTACAT
1 AACTTACAT
108993695 AA--TACAT
1 AACTTACAT
*
108993702 AACTTGCAT
1 AACTTACAT
108993711 AA--TACAT
1 AACTTACAT
108993718 AACTTACAT
1 AACTTACAT
* *
108993727 AATTTAAAGAT
1 AACTT--ACAT
*
108993738 CAAAATT-CAT
1 --AACTTACAT
* *
108993748 GATTTACAT
1 AACTTACAT
*
108993757 AATTTACAT
1 AACTTACAT
108993766 AACTTACAT
1 AACTTACAT
108993775 AA--TACAT
1 AACTTACAT
108993782 AACTTACAT
1 AACTTACAT
108993791 AA--TACAT
1 AACTTACAT
*
108993798 GACTTACAT
1 AACTTACAT
108993807 AACTTA
1 AACTTA
108993813 ATTATACTTA
Statistics
Matches: 250, Mismatches: 58, Indels: 68
0.66 0.15 0.18
Matches are distributed among these distances:
6 7 0.03
7 41 0.16
8 9 0.04
9 160 0.64
10 7 0.03
11 9 0.04
12 13 0.05
13 4 0.02
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.36
Consensus pattern (9 bp):
AACTTACAT
Found at i:108995837 original size:48 final size:48
Alignment explanation
Indices: 108995761--108995857 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
108995751 CATGAGAATT
* * *
108995761 CGGCGTGAACTTTATACTGAAGTGCTTCCGAATGGGAAATGTCTGTTA
1 CGGCGTGAACTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTA
*
108995809 CGGCGTGATCTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTA
1 CGGCGTGAACTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTA
108995857 C
1 C
108995858 CGCCTTCTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (48 bp):
CGGCGTGAACTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTA
Found at i:109000073 original size:8 final size:8
Alignment explanation
Indices: 109000060--109000089 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
109000050 AGATCGGCAC
109000060 AAGCCGAA
1 AAGCCGAA
109000068 AAGCCGAA
1 AAGCCGAA
*
109000076 ATGCCGAA
1 AAGCCGAA
109000084 AAGCCG
1 AAGCCG
109000090 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:109000562 original size:27 final size:27
Alignment explanation
Indices: 109000479--109000583 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
109000469 AGGAAGCGTC
*
109000479 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
109000506 CTAGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
109000533 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
109000560 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
109000584 GCAGTCTCGC
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 9 0.13
27 59 0.86
28 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:109002739 original size:3 final size:3
Alignment explanation
Indices: 109002731--109002771 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
109002721 CAGACCTCCT
* * *
109002731 TTA TTA TTA TTA TCA TTA TTA TTA TTC TTC TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
109002772 TTCCTGTGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:109003574 original size:44 final size:44
Alignment explanation
Indices: 109003471--109003607 Score: 166
Period size: 44 Copynumber: 3.0 Consensus size: 44
109003461 TCACCTCGTG
* *
109003471 AAAATTAAGTTTTGAGTCTCGTACCTAATTTCAAATTCAATTAC
1 AAAAGTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
* * **
109003515 AAAAGTTTTGTAAGTTCTGAGTCTTGTATTTAATTTCAAACTCAATTAC
1 AAAA-----GTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
*
109003564 AAAAGTAAGTTTTGAGTCTCCTACCTAATTTCAAACTCAATTAC
1 AAAAGTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
109003608 TTATTCTCGA
Statistics
Matches: 77, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
44 39 0.51
49 38 0.49
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (44 bp):
AAAAGTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
Found at i:109020839 original size:53 final size:52
Alignment explanation
Indices: 109020767--109020917 Score: 162
Period size: 52 Copynumber: 2.9 Consensus size: 52
109020757 CTTCATACTG
**
109020767 ATGCCATAGCCCATATATGGTCTTATACGGAATCACATTATCACATCACACCA
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCACATCACACCA
* * *** *
109020820 ATGCCATAGCCCAGCTATGGTATTATACGGGAAT-ACGA-ATCATATTGTACCG
1 ATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCAC-ATATCACATCACACCA
* * *
109020872 ATGCCATAGCCCGGCTATGGTCTTATACGGAAGCATATATCACATC
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATC
109020918 TTTTCCGTCT
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
51 5 0.06
52 42 0.52
53 27 0.34
54 6 0.08
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (52 bp):
ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCACACCA
Found at i:109020977 original size:20 final size:20
Alignment explanation
Indices: 109020954--109021016 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
109020944 GTGTCACACA
*
109020954 GGCATGTTTCAGGCCACATG
1 GGCATGTTCCAGGCCACATG
*
109020974 GGCATGTCCCAGGCCACATG
1 GGCATGTTCCAGGCCACATG
*
109020994 GGCATGTTCCAGGCCACACG
1 GGCATGTTCCAGGCCACATG
109021014 GGC
1 GGC
109021017 GTGTGCCCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (20 bp):
GGCATGTTCCAGGCCACATG
Found at i:109021552 original size:10 final size:10
Alignment explanation
Indices: 109021539--109021568 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
109021529 AGTGTAGAGA
109021539 AAAACTAAAG
1 AAAACTAAAG
109021549 AAAACCTAAAG
1 AAAA-CTAAAG
109021560 AAAACTAAA
1 AAAACTAAA
109021569 CCTAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.13, G:0.07, T:0.10
Consensus pattern (10 bp):
AAAACTAAAG
Found at i:109024413 original size:24 final size:24
Alignment explanation
Indices: 109024350--109024401 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
109024340 TTTCTAGAAG
* * *
109024350 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
109024374 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
109024398 ATTT
1 ATTT
109024402 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:109028364 original size:18 final size:18
Alignment explanation
Indices: 109028341--109028376 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
109028331 GATATGATAC
109028341 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
109028359 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
109028377 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:109028665 original size:22 final size:21
Alignment explanation
Indices: 109028630--109028705 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
109028620 AAAAGGTATC
* *
109028630 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
109028651 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
109028674 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
109028693 TGC-AATCATATCT
1 TACAAATCATATCT
109028706 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:109028690 original size:19 final size:19
Alignment explanation
Indices: 109028666--109028737 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
109028656 AATCATATCT
109028666 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
109028685 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
109028703 TCTAAGATTG--TATCGTA
1 TCTAAGATTGCATATCATA
109028720 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
109028738 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 15 0.31
18 16 0.33
19 17 0.35
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:109028727 original size:35 final size:37
Alignment explanation
Indices: 109028659--109028737 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
109028649 ATTACAAAAT
109028659 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
*
109028695 CA-ATCATATCTAAGATTG-TATCGTATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
109028730 CATATCAT
1 CATATCAT
109028738 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:109029163 original size:45 final size:45
Alignment explanation
Indices: 109029102--109029198 Score: 131
Period size: 45 Copynumber: 2.2 Consensus size: 45
109029092 ACTATCTTTG
*
109029102 ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTTATCTTCA
1 ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTCATCTTCA
* * ** **
109029147 ATCTTCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGG
1 ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTCATCTTCA
109029192 ATCTGCT
1 ATCTGCT
109029199 TCGATGTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTCATCTTCA
Found at i:109029413 original size:78 final size:78
Alignment explanation
Indices: 109029212--109029505 Score: 421
Period size: 78 Copynumber: 3.8 Consensus size: 78
109029202 ATGTAAACAC
* * *
109029212 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAAAAATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
109029277 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
109029290 AT-AAAGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
109029353 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
109029367 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
109029432 TAGATCTGTTTCA
66 TGGATCTGCTTCA
* * * * **
109029445 CTGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
109029506 TGTTTCTTTG
Statistics
Matches: 192, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
77 70 0.36
78 122 0.64
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:109030760 original size:16 final size:17
Alignment explanation
Indices: 109030739--109030770 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
109030729 CCTCTCCATT
109030739 TTTTTATTTT-TATTTC
1 TTTTTATTTTCTATTTC
109030755 TTTTTATTTTCTATTT
1 TTTTTATTTTCTATTT
109030771 TTTCGAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTATTTTCTATTTC
Found at i:109034599 original size:27 final size:27
Alignment explanation
Indices: 109034569--109034746 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
109034559 ATATTGAGTC
* *
109034569 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
109034596 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
109034623 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* ** ** *
109034651 CACACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
109034678 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
109034705 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
109034732 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
109034747 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:109044488 original size:22 final size:21
Alignment explanation
Indices: 109044453--109044528 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
109044443 AAAAGGTATC
* *
109044453 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
109044474 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
109044497 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
109044516 TGC-AATCATATCT
1 TACAAATCATATCT
109044529 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:109044545 original size:35 final size:37
Alignment explanation
Indices: 109044482--109044579 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
109044472 ATTACAAAAT
109044482 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
109044518 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
109044553 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
109044580 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:109044587 original size:17 final size:19
Alignment explanation
Indices: 109044489--109044579 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
109044479 AATCATATCT
109044489 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
109044508 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
109044526 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
109044543 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
109044562 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
109044580 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:109053282 original size:25 final size:25
Alignment explanation
Indices: 109053254--109053333 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
109053244 TTGATTCCAT
*
109053254 ATTTTTTATTTGATACTTGAACCTG
1 ATTTTTTATTTGATACTTGAACTTG
* *
109053279 A-TTTTAATGTT--TAATTCGATACTTG
1 ATTTTTTAT-TTGATACTT-GA-ACTTG
109053304 ATTTTTTATTTGATACTTGAACTTG
1 ATTTTTTATTTGATACTTGAACTTG
109053329 ATTTT
1 ATTTT
109053334 AATGTTTAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
23 4 0.09
24 8 0.18
25 20 0.45
26 8 0.18
27 4 0.09
ACGTcount: A:0.25, C:0.09, G:0.11, T:0.55
Consensus pattern (25 bp):
ATTTTTTATTTGATACTTGAACTTG
Found at i:109053331 original size:50 final size:50
Alignment explanation
Indices: 109053254--109053354 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
109053244 TTGATTCCAT
109053254 ATTTTTTATTTGATACTTGAACCTGATTTTAATGTTTAATTCGATACTTG
1 ATTTTTTATTTGATACTTGAACCTGATTTTAATGTTTAATTCGATACTTG
*
109053304 ATTTTTTATTTGATACTTGAACTTGATTTTAATGTTTAATTCGATACTTG
1 ATTTTTTATTTGATACTTGAACCTGATTTTAATGTTTAATTCGATACTTG
109053354 A
1 A
109053355 GTTTGACTTG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (50 bp):
ATTTTTTATTTGATACTTGAACCTGATTTTAATGTTTAATTCGATACTTG
Found at i:109053352 original size:25 final size:25
Alignment explanation
Indices: 109053277--109053354 Score: 90
Period size: 25 Copynumber: 3.1 Consensus size: 25
109053267 TACTTGAACC
109053277 TGATTTTAATGTTTAATTCGATACT
1 TGATTTTAATGTTTAATTCGATACT
* *
109053302 TGATTTTTTAT-TTGATACTT-GA-ACT
1 TGA-TTTTAATGTT--TAATTCGATACT
109053327 TGATTTTAATGTTTAATTCGATACT
1 TGATTTTAATGTTTAATTCGATACT
109053352 TGA
1 TGA
109053355 GTTTGACTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
23 4 0.09
24 8 0.19
25 19 0.44
26 8 0.19
27 4 0.09
ACGTcount: A:0.27, C:0.08, G:0.13, T:0.53
Consensus pattern (25 bp):
TGATTTTAATGTTTAATTCGATACT
Found at i:109062441 original size:27 final size:27
Alignment explanation
Indices: 109062386--109062442 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
109062376 TGGTATTCAT
* * * *
109062386 TTGGTGAACTCCTAGTTCGCTGAAGCA
1 TTGGTGAACACCTAGTTCACCGAAACA
*
109062413 TTGGTGAACACCTTGTTCACCGAAACA
1 TTGGTGAACACCTAGTTCACCGAAACA
109062440 TTG
1 TTG
109062443 ACGAATCTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
TTGGTGAACACCTAGTTCACCGAAACA
Found at i:109076903 original size:15 final size:16
Alignment explanation
Indices: 109076883--109076915 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
109076873 ATTAAAACTT
*
109076883 TGAAGA-ATTTTTAAA
1 TGAAGACATTTTAAAA
109076898 TGAAGACATTTTAAAA
1 TGAAGACATTTTAAAA
109076914 TG
1 TG
109076916 CATCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.36
Consensus pattern (16 bp):
TGAAGACATTTTAAAA
Found at i:109082296 original size:194 final size:194
Alignment explanation
Indices: 109081967--109082354 Score: 749
Period size: 194 Copynumber: 2.0 Consensus size: 194
109081957 TTTCTTGTGG
109081967 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
1 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
109082032 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
66 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
109082097 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
131 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
* *
109082161 GAATGTACTCTAGTGATATATTTCTGTTTCAGTTTTTTCTTTGATAAAATGCTTATCTATCTTGA
1 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
*
109082226 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTTTCACAG
66 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
109082291 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
131 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
109082355 TTCACAGATC
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
194 191 1.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (194 bp):
GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
Found at i:109084601 original size:31 final size:32
Alignment explanation
Indices: 109084560--109084619 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
109084550 AATATTACTA
109084560 TAGTGACAGCAATGAAGGCTGAAACAGGACTG
1 TAGTGACAGCAATGAAGGCTGAAACAGGACTG
* *
109084592 TAGTG-CAGCAATGAAGGTTGAAATAGGA
1 TAGTGACAGCAATGAAGGCTGAAACAGGA
109084620 GGGAAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.38, C:0.12, G:0.32, T:0.18
Consensus pattern (32 bp):
TAGTGACAGCAATGAAGGCTGAAACAGGACTG
Found at i:109087097 original size:20 final size:20
Alignment explanation
Indices: 109087072--109087110 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
109087062 TGTGAAGTTT
*
109087072 ATTGATGAGTATTTTATATA
1 ATTGATGAATATTTTATATA
109087092 ATTGATGAATATTTTATAT
1 ATTGATGAATATTTTATAT
109087111 TAGAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (20 bp):
ATTGATGAATATTTTATATA
Found at i:109092727 original size:13 final size:13
Alignment explanation
Indices: 109092705--109092743 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
109092695 TTGAACCCAT
*
109092705 ACCAATACAATCA
1 ACCAAAACAATCA
109092718 ACCAAAACAATCA
1 ACCAAAACAATCA
109092731 ACCAAAACAATCA
1 ACCAAAACAATCA
109092744 TAAAATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.59, C:0.31, G:0.00, T:0.10
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:109093560 original size:21 final size:22
Alignment explanation
Indices: 109093527--109093567 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
109093517 TTCATTTATG
*
109093527 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
109093548 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
109093568 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:109096135 original size:3 final size:3
Alignment explanation
Indices: 109096113--109096169 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
109096103 GATGAACACG
* ** *
109096113 ATA AT- ATA CATA ACA ATA ATA ATA ATA GCA ATA ATA ACA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
109096158 ATA ATGA ATA AT
1 ATA AT-A ATA AT
109096170 CTGAATTTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
2 2 0.05
3 35 0.81
4 6 0.14
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:109096350 original size:12 final size:12
Alignment explanation
Indices: 109096335--109096367 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
109096325 AATAAATAAA
109096335 TAAATAAAATAT
1 TAAATAAAATAT
*
109096347 TAAATGAAATAT
1 TAAATAAAATAT
109096359 TAAATAAAA
1 TAAATAAAA
109096368 AAGTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:109100336 original size:17 final size:17
Alignment explanation
Indices: 109100314--109100387 Score: 76
Period size: 17 Copynumber: 4.1 Consensus size: 17
109100304 ACTAAACCGA
109100314 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
109100331 CCACTAACTCCATCACCC
1 CCACTAACTCCATCA-CC
*
109100349 TTTGCCACTAATTCCATCACC
1 ----CCACTAACTCCATCACC
* *
109100370 CCACTAACCCCATTACC
1 CCACTAACTCCATCACC
109100387 C
1 C
109100388 TACTTGCCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
17 30 0.62
18 2 0.04
21 2 0.04
22 14 0.29
ACGTcount: A:0.27, C:0.50, G:0.01, T:0.22
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:109100357 original size:39 final size:39
Alignment explanation
Indices: 109100314--109100388 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
109100304 ACTAAACCGA
*
109100314 CCACTAACTCCATCACCCCACTAACTCCATCACCCTTTG
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCTTTG
* *
109100353 CCACTAATTCCATCACCCCACTAACCCCATTACCCT
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCT
109100389 ACTTGCCTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.27, C:0.49, G:0.01, T:0.23
Consensus pattern (39 bp):
CCACTAACTCCATCACCCCACTAACCCCATCACCCTTTG
Found at i:109100941 original size:13 final size:12
Alignment explanation
Indices: 109100917--109100949 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
109100907 TTTTTAAATA
109100917 TTATATTATTAT
1 TTATATTATTAT
109100929 TTATATATATTAT
1 TTATAT-TATTAT
109100942 TTATATTA
1 TTATATTA
109100950 AGCTATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATATTATTAT
Found at i:109103417 original size:19 final size:19
Alignment explanation
Indices: 109103393--109103438 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
109103383 CTTACTTTCT
109103393 TTTGCATT-CATTCCATGCA
1 TTTGCATTGCATTCCAT-CA
*
109103412 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
*
109103431 TGTGCATT
1 TTTGCATT
109103439 AAACTTCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:109106237 original size:31 final size:33
Alignment explanation
Indices: 109106202--109106270 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 33
109106192 CCTAATACAG
* *
109106202 AAAAGGAAACCAAAAA-GAAAA-AAAAACAAAA
1 AAAAGGAAACAAAAAACAAAAACAAAAACAAAA
* *
109106233 AAAAGGAAAGAAAAAACAAAAACAAAAACAACA
1 AAAAGGAAACAAAAAACAAAAACAAAAACAAAA
109106266 AAAAG
1 AAAAG
109106271 AGATTGTAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 14 0.44
32 4 0.12
33 14 0.44
ACGTcount: A:0.80, C:0.10, G:0.10, T:0.00
Consensus pattern (33 bp):
AAAAGGAAACAAAAAACAAAAACAAAAACAAAA
Found at i:109106246 original size:21 final size:19
Alignment explanation
Indices: 109106213--109106254 Score: 66
Period size: 21 Copynumber: 2.1 Consensus size: 19
109106203 AAAGGAAACC
109106213 AAAAAGAAAAAAAAACAAA
1 AAAAAGAAAAAAAAACAAA
109106232 AAAAAGGAAAGAAAAAACAAA
1 AAAAA-GAAA-AAAAAACAAA
109106253 AA
1 AA
109106255 CAAAAACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
20 4 0.19
21 12 0.57
ACGTcount: A:0.86, C:0.05, G:0.10, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAAAAAACAAA
Found at i:109106444 original size:11 final size:11
Alignment explanation
Indices: 109106428--109106453 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
109106418 ATTCATTTTT
109106428 ATGGAATAAAA
1 ATGGAATAAAA
109106439 ATGGAATAAAA
1 ATGGAATAAAA
109106450 ATGG
1 ATGG
109106454 CCCAACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.23, T:0.19
Consensus pattern (11 bp):
ATGGAATAAAA
Found at i:109107146 original size:21 final size:22
Alignment explanation
Indices: 109107101--109107143 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
109107091 TTTTATGAAC
109107101 ATTTTTTAAATATTATATTATT
1 ATTTTTTAAATATTATATTATT
*
109107123 ATTTTTATATATATTAT-TTAT
1 ATTTTT-TAAATATTATATTAT
109107144 ATTAAGCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
ATTTTTTAAATATTATATTATT
Found at i:109107201 original size:18 final size:17
Alignment explanation
Indices: 109107114--109107203 Score: 55
Period size: 17 Copynumber: 5.2 Consensus size: 17
109107104 TTTTAAATAT
109107114 TATATTATTATTTT-TA
1 TATATTATTATTTTGTA
*
109107130 TATA-TATTA-TTTATA
1 TATATTATTATTTTGTA
*
109107145 TTAAGCTATT-TGTATTTTGTT
1 -T-A--TATTAT-TATTTTGTA
*
109107166 TATATTATT-TATTCGTA
1 TATATTATTAT-TTTGTA
109107183 TATATATATTATTTTGTA
1 TATAT-TATTATTTTGTA
109107201 TAT
1 TAT
109107204 CATTTATACT
Statistics
Matches: 57, Mismatches: 5, Indels: 22
0.68 0.06 0.26
Matches are distributed among these distances:
14 3 0.05
15 7 0.12
16 6 0.11
17 15 0.26
18 13 0.23
19 5 0.09
20 4 0.07
21 4 0.07
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTATTATTTTGTA
Found at i:109109628 original size:19 final size:19
Alignment explanation
Indices: 109109604--109109649 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
109109594 CTTACTTTCT
109109604 TTTGCATT-CATTCCATGCA
1 TTTGCATTGCATTCCAT-CA
*
109109623 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
*
109109642 TGTGCATT
1 TTTGCATT
109109650 AAACTTCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:109112469 original size:19 final size:20
Alignment explanation
Indices: 109112447--109112502 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
109112437 AAAGGAAACC
109112447 AAAAAGAA-AAAAAAACAAA
1 AAAAAGAACAAAAAAACAAA
* *
109112466 AAAAGGAACGAAAAAACAAA
1 AAAAAGAACAAAAAAACAAA
109112486 AACAAA-AACAACAAAAA
1 AA-AAAGAACAA-AAAAA
109112503 GAGATTGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 7 0.23
20 16 0.53
21 7 0.23
ACGTcount: A:0.82, C:0.11, G:0.07, T:0.00
Consensus pattern (20 bp):
AAAAAGAACAAAAAAACAAA
Found at i:109114191 original size:64 final size:64
Alignment explanation
Indices: 109114109--109114235 Score: 209
Period size: 64 Copynumber: 2.0 Consensus size: 64
109114099 CATTCATAGT
* * *
109114109 ACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCATC
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
* *
109114173 ACATCTAGCTCGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTGTTTGGCATAAGCAT
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCAT
109114236 ATATACATGA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (64 bp):
ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
Found at i:109114639 original size:134 final size:134
Alignment explanation
Indices: 109114482--109114747 Score: 444
Period size: 134 Copynumber: 2.0 Consensus size: 134
109114472 AAAGATACAT
* *
109114482 GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAA-AAGTTACAGATCTTATCTCCATGTATTG
1 GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAA-CTACAGATCTTATCTCCATGTATCG
* * *
109114546 GCTATGGAGCATATCAGAAATGACGAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGC
65 GCTATGGAGCAGATAAAAAATGACGAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGC
109114611 CACTA
130 CACTA
*
109114616 GTCTTATCTTTCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCGG
1 GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCGG
* *
109114681 CTATGGAGCAGATAAAAAATGGCGAGTTTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATGGAGCAGATAAAAAATGACGAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
109114746 AC
131 AC
109114748 CACCCTTATC
Statistics
Matches: 123, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
134 121 0.98
135 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (134 bp):
GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCGG
CTATGGAGCAGATAAAAAATGACGAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
ACTA
Found at i:109114880 original size:177 final size:176
Alignment explanation
Indices: 109114615--109115047 Score: 668
Period size: 177 Copynumber: 2.4 Consensus size: 176
109114605 TTTAGCCACT
* * *
109114615 AGTCTTATCTTTCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAA-AATTACAGATCTTATCTCCATGTATCG
* * *
109114680 GCTATGGAGCAGATAAAAAATGGCGAGTTTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGC
65 GCTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGC
* *
109114745 CACCACCCTTATCTCTCTGCGGTAGCAAGAGAGCAGGTTGAAGATAAA
130 CACCACCCTTATCTCTCTGAGGTAGCAA-AGAGCAAGTTGAAGATAAA
* *
109114793 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATATTATCTCTATGTATCGG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
* * *
109114858 CTATAGAGCAGATCAGAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCC
* * *
109114923 ACCAGCCTTATCTCTGTGAGGTAGCAAAGAGCAAGTTGAAGATACA
131 ACCACCCTTATCTCTCTGAGGTAGCAAAGAGCAAGTTGAAGATAAA
* * *
109114969 AGTCTTATATTCATGAAGTTGCAAGAAGCAGACTGAAAATTTACAGATCTTATCTCCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATCG
109115034 GCTATGGAGCAGAT
65 GCTATGGAGCAGAT
109115048 TTTAGCCACC
Statistics
Matches: 232, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
176 53 0.23
177 144 0.62
178 35 0.15
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (176 bp):
AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
CTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCC
ACCACCCTTATCTCTCTGAGGTAGCAAAGAGCAAGTTGAAGATAAA
Found at i:109115157 original size:133 final size:132
Alignment explanation
Indices: 109114884--109115180 Score: 495
Period size: 133 Copynumber: 2.2 Consensus size: 132
109114874 AAATGGCGAG
* *
109114884 TCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAACA
* *
109114949 AAGAGCAAGTTGAAGATACAAGTCTTATATTCATGAAGTTGCAAGAAGCAGACTGAAAATTTACA
66 AAGAACAAGTTGAAGATACAAGTCTTATATTCATGAAGTTACAAGAAGCAGACTGAAAATTTACA
109115014 GA
131 GA
* *
109115016 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTTTGAGGTAACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAACA
* * * *
109115081 AGAGAACAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTTAC
66 A-AGAACAAGTTGAAGATACAAGTCTTATATTCATGAAGTTACAAGAAGCAGACTGAAAATTTAC
109115146 AGA
130 AGA
109115149 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
109115181 CGAAAATGGC
Statistics
Matches: 154, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
132 62 0.40
133 92 0.60
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAACA
AAGAACAAGTTGAAGATACAAGTCTTATATTCATGAAGTTACAAGAAGCAGACTGAAAATTTACA
GA
Found at i:109115186 original size:46 final size:46
Alignment explanation
Indices: 109115128--109115225 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 46
109115118 AGTTACAGGA
*
109115128 AGCAGA-CTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGG
1 AGCAGATCTGAAAA-TGACAGATCTTATCTCCATGTATCGGCTATGG
* * *
109115174 AGCAGATC-GAAAATGGCGGGTCTTATCTCCATGTATCGGCTATGG
1 AGCAGATCTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGG
109115219 AGCAGAT
1 AGCAGAT
109115226 TTTAGCCACC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
45 35 0.74
46 11 0.23
47 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (46 bp):
AGCAGATCTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGG
Found at i:109115214 original size:178 final size:178
Alignment explanation
Indices: 109115016--109115358 Score: 573
Period size: 178 Copynumber: 1.9 Consensus size: 178
109115006 AATTTACAGA
* * *
109115016 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTTTGAGGTAACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAACA
* *
109115081 AGAGAACAGGTTGAAGATACA-AGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAA-AATTT
66 AGAGAACAGGATAAAGATACAGA-TCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAGAA-TT
109115144 ACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGGG
129 ACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGGG
*
109115194 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAACA
* **
109115259 AGAGAGCAGGATAAAGATACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTAC
66 AGAGAACAGGATAAAGATACAGATCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAGAATTAC
109115324 AGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
109115359 TTTAGCCACT
Statistics
Matches: 154, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
178 151 0.98
179 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (178 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAACA
AGAGAACAGGATAAAGATACAGATCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAGAATTAC
AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGGG
Found at i:109115327 original size:45 final size:45
Alignment explanation
Indices: 109115276--109115423 Score: 128
Period size: 45 Copynumber: 3.3 Consensus size: 45
109115266 AGGATAAAGA
109115276 TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
1 TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
* * * ** *
109115321 TACAGATCTTATC-TCCATGTA-TCGGCTATGG-AGCAGATTTTAG--C
1 TACAGATCTTATCTTCC-TGAAGT-TG-TA-GGAAGCAGACTGAAGAAT
* * *
109115365 CACTAG-TCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAAT
1 TAC-AGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
109115410 TACAGATCTTATCT
1 TACAGATCTTATCT
109115424 CCATGTATCG
Statistics
Matches: 76, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
42 2 0.03
43 10 0.13
44 19 0.25
45 32 0.42
46 11 0.14
47 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (45 bp):
TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
Found at i:109115395 original size:89 final size:89
Alignment explanation
Indices: 109115282--109115456 Score: 323
Period size: 89 Copynumber: 2.0 Consensus size: 89
109115272 AAGATACAGA
*
109115282 TCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
109115347 TATGGAGCAGATTTTAGCCACTAG
66 TATGGAGCAGATTTTAGCCACTAG
*
109115371 TCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
*
109115436 TATGGAGTAGATTTTAGCCAC
66 TATGGAGCAGATTTTAGCCAC
109115457 CGGCCTTATC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (89 bp):
TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
TATGGAGCAGATTTTAGCCACTAG
Found at i:109115465 original size:133 final size:131
Alignment explanation
Indices: 109114884--109115579 Score: 474
Period size: 133 Copynumber: 5.2 Consensus size: 131
109114874 AAATGGCGAG
* * *
109114884 TCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCT-C-TGTGAGGTAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCCATGT-A--TGG
* * * *
109114947 C-AAAGAGCA-AGTTGAAGATACAAGTCTTATATTCATGAAGTTGCAAGAAGCAGACTGAAAATT
63 CTAAGGAGCAGA-TTGAAGACACAAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAA-T
109115010 TACAGA
126 TACAGA
**
109115016 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTTTG-A-GG-TA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCCATGTATGGCT-
* * * * * *
109115078 ACAAGAGAACAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATT
65 --AAG-GAGCAGATTGAAGACACAAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAA-T
109115143 TACAGA
126 TACAGA
*** **** * *
109115149 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGGGTCTTATCTCCATGTATCGGC
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT-TTTAGCCACCGGCCTTATCTCCATGTAT-GGC
* ** * * * * * *
109115214 TATGGAGCAGATTTTAGCCACCAGCCTCATC-TCTCTGAGGTAGCAAGAGAGCAGGA-T-AAAGA
64 TAAGGAGCAGATTGAAGACACAAGTCTTATCTTCT-TGAAGTTGCAAGA-AGCA-GACTGAAA-A
109115276 -TACAGA
125 TTACAGA
* * * ** ** * **
109115282 TCTTATCTTCC-TGAAGT-TG-TA-GGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTAT
1 TCTTATC-TCCATGTA-TCGGCTATGG-AGCAGATTTTAG--CCACCGGCCTTATCTCCATGTAT
* ** * * *
109115343 CGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGA
61 -GGCTAAGGAGCAGATTGAAGACACAAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAA-A
109115408 ATTACAGA
124 ATTACAGA
* *
109115416 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCGGCCTTATCTCTCTAAGGTA--G
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTC-C--ATGTATGG
* * ** * *
109115479 C-AAGAGAGCAGGTTGAAGATAGTAGTCTTATCTTCTAGAAGTTGCAAGAAGCAAACTGAAAATT
63 CTAAG-GAGCAGATTGAAGACACAAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAATT
**
109115543 ATGGA
127 ACAGA
* *
109115548 TCTTATCTCCATATATCGGTTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
109115580 CAGAAATGGC
Statistics
Matches: 449, Mismatches: 80, Indels: 70
0.75 0.13 0.12
Matches are distributed among these distances:
129 1 0.00
131 6 0.01
132 104 0.23
133 236 0.53
134 72 0.16
135 19 0.04
136 8 0.02
137 2 0.00
138 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (131 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCCATGTATGGCTA
AGGAGCAGATTGAAGACACAAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAATTACAG
A
Found at i:109115597 original size:222 final size:221
Alignment explanation
Indices: 109115194--109115600 Score: 570
Period size: 222 Copynumber: 1.8 Consensus size: 221
109115184 AAATGGCGGG
*
109115194 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTAAGGTAGCA
* * *
109115259 AGAGAGCAGGATAAAGATACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTAC
66 AGAGAGCAGGATAAAGATACAGATCTTATCTTCCTGAAGTTGCAAGAAGCAAACTGAAGAATTAC
* * ** *
109115324 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCTTGAAGTT
131 AGATCTTATCTCCATATATCGGCTATGGAGCAGA-TTCAGAAACAAGTCTTATCTTCTTGAAGTT
109115389 GCAGGAAGCAGACTGAAGAATTACAGA
195 GCAGGAAGCAGACTGAAGAATTACAGA
* * *
109115416 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCGGCCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTAAGGTAGCA
* * *
109115481 AGAGAGCAGGTTGAAGATAGTAG-TCTTATCTT-CTAGAAGTTGCAAGAAGCAAACTGAA-AATT
66 AGAGAGCAGGATAAAGATA-CAGATCTTATCTTCCT-GAAGTTGCAAGAAGCAAACTGAAGAATT
** *
109115543 ATGGATCTTATCTCCATATATCGGTTATGGAGCAGA-TCAGAAATGGCAAGTCTTATCT
129 ACAGATCTTATCTCCATATATCGGCTATGGAGCAGATTCAGAAA---CAAGTCTTATCT
109115601 CCATGTATCG
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
219 4 0.02
221 38 0.23
222 118 0.73
223 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (221 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTAAGGTAGCA
AGAGAGCAGGATAAAGATACAGATCTTATCTTCCTGAAGTTGCAAGAAGCAAACTGAAGAATTAC
AGATCTTATCTCCATATATCGGCTATGGAGCAGATTCAGAAACAAGTCTTATCTTCTTGAAGTTG
CAGGAAGCAGACTGAAGAATTACAGA
Found at i:109115653 original size:133 final size:134
Alignment explanation
Indices: 109115108--109115657 Score: 383
Period size: 133 Copynumber: 4.1 Consensus size: 134
109115098 TACAAGTCTT
* * * *
109115108 ATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATG
1 ATCTCCCTGAAGTTGCAAGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATATATCGGCTATG
* **
109115173 GAGCAGATC-GAAAATGGCGGGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA-CC
65 GAGCAGATCAGAAAATGGC-AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTG
109115236 AGCCTC
129 AGCCTC
* * * *
109115242 ATCTCTCTGAGGTAGCAAGAGAGCAGGA-T-AAAGA-TACAGATCTTATCTTCC-TGA-AGT-TG
1 ATCTCCCTGAAGTTGCAAGA-AGCA-GACTGAAA-ATTACAGATCTTATC-TCCAT-ATA-TCGG
* **
109115301 -TA-GGAAGCAGA-CTGAAGAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTA
60 CTATGG-AGCAGATCAGAA-AATGGCAG-TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTA
* * *
109115363 GCCACT-AGTCTT
122 GCCATTGAGCCTC
* * * *
109115375 ATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGCTATG
1 ATCTCCCTGAAGTTGCAAGAAGCAGACTGAA-AATTACAGATCTTATCTCCATATATCGGCTATG
* * ** ** * * * **
109115440 GAGTAGATTTTAGCCACCGGC---CTTATCTCTCTAAGGTA---GC-AAGAGAGCAGGTTGAAG-
65 GAGCAGA--TCAGAAAATGGCAGTCTTATCTC-C--ATGTATCGGCTATG-GAGCAGATTTTAGC
* * *
109115497 -ATAGTAGTCTT
124 CATTG-AGCCTC
* * ** *
109115508 ATCT-TCTAGAAGTTGCAAGAAGCAAACTGAAAATTATGGATCTTATCTCCATATATCGGTTATG
1 ATCTCCCT-GAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCGGCTATG
109115572 GAGCAGATCAG-AAATGGCAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTG
65 GAGCAGATCAGAAAATGGC-AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTG
109115636 A-CCTC
129 AGCCTC
109115641 ATCTCCCTGAAGTTGCA
1 ATCTCCCTGAAGTTGCA
109115658 GTGGAACAGG
Statistics
Matches: 315, Mismatches: 60, Indels: 83
0.69 0.13 0.18
Matches are distributed among these distances:
129 4 0.01
130 7 0.02
131 6 0.02
132 56 0.18
133 171 0.54
134 44 0.14
135 16 0.05
136 8 0.03
137 2 0.01
138 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (134 bp):
ATCTCCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCGGCTATGG
AGCAGATCAGAAAATGGCAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTGAG
CCTC
Found at i:109119588 original size:45 final size:45
Alignment explanation
Indices: 109119533--109119619 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
109119523 CAAATTTTAA
* *
109119533 GAATTATTGACATTATTATCCATATAATA-TCATTTTATGTTTCAG
1 GAATTATTGACACTATTATCCACATAATACT-ATTTTATGTTTCAG
* *
109119578 GAATTTTTGACACTATTATCCACGTAATACTATTTTATGTTT
1 GAATTATTGACACTATTATCCACATAATACTATTTTATGTTT
109119620 GCATATCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 36 0.97
46 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (45 bp):
GAATTATTGACACTATTATCCACATAATACTATTTTATGTTTCAG
Found at i:109119750 original size:30 final size:27
Alignment explanation
Indices: 109119684--109119751 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
109119674 TTAAAAAAAA
*
109119684 TTGTGTACAATTAAATAAAAATTTTAT
1 TTGTGTATAATTAAATAAAAATTTTAT
109119711 TTGTG--TAATTAAATTAAAATTAATTTT-T
1 TTGTGTATAATTAAA-T-AAA--AATTTTAT
109119739 TTGTGTATAATTA
1 TTGTGTATAATTA
109119752 TACTAAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
25 7 0.21
26 1 0.03
27 8 0.24
28 6 0.18
29 6 0.18
30 6 0.18
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (27 bp):
TTGTGTATAATTAAATAAAAATTTTAT
Found at i:109123941 original size:13 final size:13
Alignment explanation
Indices: 109123923--109123949 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
109123913 GACCACTCTA
109123923 TTTTTTTGATACC
1 TTTTTTTGATACC
109123936 TTTTTTTGATACC
1 TTTTTTTGATACC
109123949 T
1 T
109123950 GTTAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (13 bp):
TTTTTTTGATACC
Found at i:109124053 original size:27 final size:27
Alignment explanation
Indices: 109124022--109124073 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
109124012 ACTAGAGGGG
*
109124022 GCACTGGTGAAGCCTCTGGCAGAGGCA
1 GCACTGGTAAAGCCTCTGGCAGAGGCA
* *
109124049 GCACTGGTAAAGCTTCTGTCAGAGG
1 GCACTGGTAAAGCCTCTGGCAGAGG
109124074 TGGCACCAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (27 bp):
GCACTGGTAAAGCCTCTGGCAGAGGCA
Found at i:109124079 original size:27 final size:27
Alignment explanation
Indices: 109124015--109124079 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
109124005 AGGATGTACT
* *
109124015 AGAGGGGGCACTGGTGAAGCCTCTGGC
1 AGAGGCGGCACTGGTAAAGCCTCTGGC
* * *
109124042 AGAGGCAGCACTGGTAAAGCTTCTGTC
1 AGAGGCGGCACTGGTAAAGCCTCTGGC
*
109124069 AGAGGTGGCAC
1 AGAGGCGGCAC
109124080 CAGTTGCTGA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.38, T:0.17
Consensus pattern (27 bp):
AGAGGCGGCACTGGTAAAGCCTCTGGC
Found at i:109126322 original size:43 final size:43
Alignment explanation
Indices: 109126093--109126299 Score: 378
Period size: 43 Copynumber: 4.8 Consensus size: 43
109126083 GTTTATTGGA
*
109126093 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
109126136 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTTTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
109126179 AAAAGCGCCGCTAAAGGTCAAGGCTTTTTGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
109126222 AAAAGCGACGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
109126265 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
109126300 CTTTTTTTGC
Statistics
Matches: 157, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 157 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:109132184 original size:9 final size:9
Alignment explanation
Indices: 109132170--109132320 Score: 169
Period size: 9 Copynumber: 16.9 Consensus size: 9
109132160 TGACAACATA
109132170 TAAGTTATG
1 TAAGTTATG
*
109132179 TAAGTTATA
1 TAAGTTATG
109132188 TAAGTTATG
1 TAAGTTATG
109132197 TAAGTTATG
1 TAAGTTATG
109132206 TAAGTTATG
1 TAAGTTATG
**
109132215 TAAGTTACA
1 TAAGTTATG
*
109132224 TAACTTATG
1 TAAGTTATG
109132233 TAAGTTATG
1 TAAGTTATG
* *
109132242 TATGTTATA
1 TAAGTTATG
*
109132251 TGAGTTATG
1 TAAGTTATG
*
109132260 TAAGTTATA
1 TAAGTTATG
*
109132269 TAAGTTATA
1 TAAGTTATG
* *
109132278 T-ATTTATC
1 TAAGTTATG
*
109132286 TAAGTTATA
1 TAAGTTATG
109132295 TAAGTTATG
1 TAAGTTATG
* *
109132304 TACGTTTTG
1 TAAGTTATG
109132313 TAAGTTAT
1 TAAGTTAT
109132321 ATAAATTATA
Statistics
Matches: 117, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
8 6 0.05
9 111 0.95
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:109132201 original size:27 final size:27
Alignment explanation
Indices: 109132171--109132330 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
109132161 GACAACATAT
*
109132171 AAGTTATGTAAGTTATATAAGTTATGT
1 AAGTTATGTAAGTTATATAAGTTATAT
* *
109132198 AAGTTATGTAAGTTATGTAAGTTACAT
1 AAGTTATGTAAGTTATATAAGTTATAT
* * *
109132225 AACTTATGTAAGTTATGTATGTTATAT
1 AAGTTATGTAAGTTATATAAGTTATAT
*
109132252 GAGTTATGTAAGTTATATAAGTTATAT
1 AAGTTATGTAAGTTATATAAGTTATAT
* * *
109132279 -ATTTATCTAAGTTATATAAGTTATGT
1 AAGTTATGTAAGTTATATAAGTTATAT
* * *
109132305 ACGTTTTGTAAGTTATATAAATTATA
1 AAGTTATGTAAGTTATATAAGTTATA
109132331 ATATCAAATA
Statistics
Matches: 113, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 23 0.20
27 90 0.80
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.46
Consensus pattern (27 bp):
AAGTTATGTAAGTTATATAAGTTATAT
Found at i:109132455 original size:15 final size:15
Alignment explanation
Indices: 109132435--109132490 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
109132425 AAGTAGCGGG
109132435 ATTAAATAATATTTA
1 ATTAAATAATATTTA
109132450 ATTAAATAATATTT-
1 ATTAAATAATATTTA
109132464 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
109132479 ATTAAGTAATAT
1 ATTAAATAATAT
109132491 ACATGTCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:109135219 original size:62 final size:61
Alignment explanation
Indices: 109135061--109135241 Score: 344
Period size: 61 Copynumber: 3.0 Consensus size: 61
109135051 ACAAACTAGT
*
109135061 TTTTCCATTTCAGAACAAAAAATCCAAACAATAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
109135122 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
109135183 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
1 TTTTCCATTTCAGAACAAAAA-ATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
109135242 CAAATTTTGG
Statistics
Matches: 118, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
61 81 0.69
62 37 0.31
ACGTcount: A:0.55, C:0.18, G:0.08, T:0.19
Consensus pattern (61 bp):
TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
Found at i:109136724 original size:13 final size:13
Alignment explanation
Indices: 109136706--109136750 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
109136696 ATATTTATAT
109136706 ATATTTTAAAATA
1 ATATTTTAAAATA
*
109136719 ATATTTT-ATAT-
1 ATATTTTAAAATA
109136730 ATATTTTAAAATA
1 ATATTTTAAAATA
109136743 ATATTTTA
1 ATATTTTA
109136751 TATATATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 7 0.25
12 6 0.21
13 15 0.54
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATATTTTAAAATA
Found at i:109136754 original size:26 final size:24
Alignment explanation
Indices: 109136699--109136759 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
109136689 CATATGTATA
109136699 TTTATATATATTTTAAAATAATAT
1 TTTATATATATTTTAAAATAATAT
109136723 TTTATATATATTTTAAAATAATAT
1 TTTATATATATTTTAAAATAATAT
109136747 TTTATATATATTT
1 TTTATATATATTT
109136760 ATCTCATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTATATATATTTTAAAATAATAT
Found at i:109137633 original size:26 final size:25
Alignment explanation
Indices: 109137604--109137653 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
109137594 AAATTAATCA
109137604 TAAACCTTCAAATAC-TAGTTAACTCC
1 TAAACCTT-AAA-ACATAGTTAACTCC
*
109137630 TAAACCTTAAACCATAGTTAACTC
1 TAAACCTTAAAACATAGTTAACTC
109137654 ATAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAACCTTAAAACATAGTTAACTCC
Done.