Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 33 of 349
Found at i:9182472 original size:26 final size:26
Alignment explanation
Indices: 9182440--9182545 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
9182430 TGATAAAAAT
*
9182440 TGATAATTGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
9182466 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9182492 TGATAATGGGTTAGGT--ATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9182516 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9182542 TGAT
1 TGAT
9182546 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
24 24 0.32
26 51 0.68
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:9182524 original size:50 final size:51
Alignment explanation
Indices: 9182440--9182545 Score: 178
Period size: 50 Copynumber: 2.1 Consensus size: 51
9182430 TGATAAAAAT
*
9182440 TGATAATTGGTTAGGTAAATGTTCCATAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGT-AATGTTCCATAATAATGGGTTAGGTAAATGTTCCA
*
9182492 TGATAATGGGTTAGGT-ATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAATGTTCCATAATAATGGGTTAGGTAAATGTTCCA
9182542 TGAT
1 TGAT
9182546 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
50 37 0.71
52 15 0.29
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAATGTTCCATAATAATGGGTTAGGTAAATGTTCCA
Found at i:9184191 original size:27 final size:25
Alignment explanation
Indices: 9184151--9184282 Score: 149
Period size: 27 Copynumber: 5.0 Consensus size: 25
9184141 GTCCTGGTGG
9184151 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACA-ATATCTGT
*
9184177 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTG-T
9184205 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTG-T
9184232 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG--T
* *
9184259 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
9184283 GCAGCCTCGC
Statistics
Matches: 94, Mismatches: 6, Indels: 10
0.85 0.05 0.09
Matches are distributed among these distances:
26 9 0.10
27 83 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (25 bp):
CTGGTGGCTCTGCCACAATATCTGT
Found at i:9184215 original size:54 final size:54
Alignment explanation
Indices: 9184151--9184264 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
9184141 GTCCTGGTGG
9184151 CTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCCACAA-TATCTGTAT
* *
9184205 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCCACAATATCTGTAT
9184259 CTGGTG
1 CTGGTG
9184265 ACTTCGTCAC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
53 6 0.11
54 51 0.89
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCCACAATATCTGTAT
Found at i:9187694 original size:12 final size:10
Alignment explanation
Indices: 9187667--9187820 Score: 62
Period size: 11 Copynumber: 15.6 Consensus size: 10
9187657 ATATAAAAAT
9187667 AAAAATATTA
1 AAAAATATTA
9187677 AAAAATATGTA
1 AAAAATAT-TA
9187688 GAAAAATA-T-
1 -AAAAATATTA
9187697 -AAAA-ATTA
1 AAAAATATTA
9187705 AAAAATATATA
1 AAAAATAT-TA
* *
9187716 AAAATATCTTT
1 AAAA-ATATTA
* *
9187727 CAAATTCATTA
1 AAAAAT-ATTA
9187738 AAAAATTATT-
1 AAAAA-TATTA
*
9187748 ACAAATA-TA
1 AAAAATATTA
*
9187757 AAGAAT-TATA
1 AAAAATAT-TA
*
9187767 GAAAATCATTTA
1 AAAAAT-A-TTA
9187779 AAAAATA-T-
1 AAAAATATTA
9187787 AAAAATCATTA
1 AAAAAT-ATTA
*
9187798 TAAAATA-T-
1 AAAAATATTA
9187806 AAAAATA-TA
1 AAAAATATTA
9187815 AAAAAT
1 AAAAAT
9187821 CATAAAAACT
Statistics
Matches: 108, Mismatches: 16, Indels: 41
0.65 0.10 0.25
Matches are distributed among these distances:
6 1 0.01
7 5 0.05
8 14 0.13
9 19 0.18
10 24 0.22
11 26 0.24
12 18 0.17
13 1 0.01
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAAATATTA
Found at i:9187787 original size:21 final size:19
Alignment explanation
Indices: 9187732--9187868 Score: 97
Period size: 19 Copynumber: 6.9 Consensus size: 19
9187722 TCTTTCAAAT
*
9187732 TCATTAAAAAATTATTACAAA
1 TCATTAAAAAA-TA-TAAAAA
*
9187753 T-A-TAAAGAATTATAGAAAA
1 TCATTAAA-AAATATA-AAAA
9187772 TCATTTAAAAAATATAAAAA
1 TCA-TTAAAAAATATAAAAA
*
9187792 TCATTATAAAATATAAAAA
1 TCATTAAAAAATATAAAAA
9187811 T-A-TAAAAAATCATAAAAA
1 TCATTAAAAAAT-ATAAAAA
9187829 -C-TTATAAAAATAGTAAAAA
1 TCATTA-AAAAATA-TAAAAA
*
9187848 TTCATAAAATAAATTATAAAA
1 -TCATTAAA-AAA-TATAAAA
9187869 TTCGTAAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 29
0.73 0.05 0.22
Matches are distributed among these distances:
17 7 0.07
18 13 0.14
19 38 0.40
20 11 0.12
21 10 0.11
22 14 0.15
23 2 0.02
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (19 bp):
TCATTAAAAAATATAAAAA
Found at i:9187790 original size:19 final size:19
Alignment explanation
Indices: 9187768--9187827 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 19
9187758 AGAATTATAG
9187768 AAAATCATTTAAAAAATAT
1 AAAATCATTTAAAAAATAT
*
9187787 AAAAATCA-TTATAAAATAT
1 -AAAATCATTTAAAAAATAT
*
9187806 AAAA--ATATAAAAAATCAT
1 AAAATCATTTAAAAAAT-AT
9187824 AAAA
1 AAAA
9187828 ACTTATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 1 0.03
17 7 0.20
18 10 0.29
19 10 0.29
20 7 0.20
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAATCATTTAAAAAATAT
Found at i:9187818 original size:28 final size:28
Alignment explanation
Indices: 9187779--9187856 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
9187769 AAATCATTTA
9187779 AAAAATAT-AAAAATCATTATAAAA-TAT
1 AAAAATATAAAAAATCATTA-AAAACTAT
9187806 AAAAATATAAAAAATCA-TAAAAACTTAT
1 AAAAATATAAAAAATCATTAAAAAC-TAT
*
9187834 AAAAATAGTAAAAATTCA-TAAAA
1 AAAAATA-TAAAAAATCATTAAAA
9187857 TAAATTATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
26 4 0.09
27 10 0.22
28 18 0.39
29 14 0.30
ACGTcount: A:0.68, C:0.05, G:0.01, T:0.26
Consensus pattern (28 bp):
AAAAATATAAAAAATCATTAAAAACTAT
Found at i:9187825 original size:10 final size:9
Alignment explanation
Indices: 9187652--9187847 Score: 75
Period size: 8 Copynumber: 20.6 Consensus size: 9
9187642 ACATGTGGAA
9187652 AAAAAATAT
1 AAAAAATAT
9187661 -AAAAATA-
1 AAAAAATAT
*
9187668 AAAATAT-T
1 AAAAAATAT
9187676 AAAAAATATGT
1 AAAAAATA--T
9187687 AGAAAAATAT
1 A-AAAAATAT
9187697 -AAAAAT-T
1 AAAAAATAT
9187704 AAAAAATAT
1 AAAAAATAT
9187713 ATAAAAATATCTT
1 A-AAAAATA---T
** *
9187726 TCAAATTCATT
1 AAAAAAT-A-T
9187737 AAAAAATTAT
1 AAAAAA-TAT
* *
9187747 TACAAATAT
1 AAAAAATAT
*
9187756 AAAGAATTAT
1 AAA-AAATAT
*
9187766 AGAAAATCATTT
1 A-AAAA--ATAT
9187778 AAAAAATAT
1 AAAAAATAT
9187787 -AAAAATCATT
1 AAAAAAT-A-T
*
9187797 ATAAAATAT
1 AAAAAATAT
9187806 -AAAAATAT
1 AAAAAATAT
9187814 AAAAAATCAT
1 AAAAAAT-AT
*
9187824 AAAAACT-T
1 AAAAAATAT
9187832 ATAAAAATAGT
1 A-AAAAATA-T
9187843 AAAAA
1 AAAAA
9187848 TTCATAAAAT
Statistics
Matches: 141, Mismatches: 20, Indels: 51
0.67 0.09 0.24
Matches are distributed among these distances:
7 1 0.01
8 45 0.32
9 22 0.16
10 35 0.25
11 21 0.15
12 15 0.11
13 2 0.01
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAAAATAT
Found at i:9187856 original size:10 final size:8
Alignment explanation
Indices: 9187779--9187848 Score: 68
Period size: 9 Copynumber: 7.8 Consensus size: 8
9187769 AAATCATTTA
9187779 AAAAATAT
1 AAAAATAT
9187787 AAAAATCATT
1 AAAAAT-A-T
9187797 ATAAAATAT
1 A-AAAATAT
9187806 AAAAATAT
1 AAAAATAT
9187814 AAAAAATCAT
1 -AAAAAT-AT
9187824 AAAAACTTAT
1 AAAAA--TAT
9187834 AAAAATAGT
1 AAAAATA-T
9187843 AAAAAT
1 AAAAAT
9187849 TCATAAAATA
Statistics
Matches: 54, Mismatches: 0, Indels: 15
0.78 0.00 0.22
Matches are distributed among these distances:
8 15 0.28
9 21 0.39
10 12 0.22
11 6 0.11
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (8 bp):
AAAAATAT
Found at i:9187857 original size:18 final size:16
Alignment explanation
Indices: 9187780--9187902 Score: 76
Period size: 19 Copynumber: 7.2 Consensus size: 16
9187770 AATCATTTAA
9187780 AAAATATAAAAATCATTAT
1 AAAATAT-AAAA--ATTAT
*
9187799 AAAATATAAAAATATAA
1 AAAATATAAAAAT-TAT
9187816 AAAATCATAAAAACTTAT
1 AAAAT-ATAAAAA-TTAT
9187834 AAAAATAGTAAAAATTCAT
1 -AAAATA-TAAAAATT-AT
9187853 -AAA-AT--AAATTAT
1 AAAATATAAAAATTAT
*
9187865 AAAATTCGTAAATAATTAT
1 AAAA-T-ATAAA-AATTAT
*
9187884 AAAATTTAAAAATT-T
1 AAAATATAAAAATTAT
9187899 AAAA
1 AAAA
9187903 ATTTTATTAA
Statistics
Matches: 87, Mismatches: 4, Indels: 30
0.72 0.03 0.25
Matches are distributed among these distances:
12 2 0.02
13 8 0.09
15 6 0.07
16 8 0.09
17 14 0.16
18 18 0.21
19 31 0.36
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (16 bp):
AAAATATAAAAATTAT
Found at i:9187868 original size:31 final size:30
Alignment explanation
Indices: 9187728--9187868 Score: 109
Period size: 31 Copynumber: 4.8 Consensus size: 30
9187718 AATATCTTTC
* *
9187728 AAATTCATTAAA-AAATTATTACAAATATAA
1 AAATTCATAAAATAAATTA-TAAAAATATAA
* *
9187758 AGAATT-ATAGAAAATCATTTA-AAAAATATAA
1 A-AATTCAT--AAAATAAATTATAAAAATATAA
* *
9187789 AAA-TCAT--TATAAAATATAAAAATATAA
1 AAATTCATAAAATAAATTATAAAAATATAA
* *
9187816 AAAATCAT-AAA-AACTTATAAAAATAGTAA
1 AAATTCATAAAATAAATTATAAAAATA-TAA
9187845 AAATTCATAAAATAAATTATAAAA
1 AAATTCATAAAATAAATTATAAAA
9187869 TTCGTAAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
26 5 0.06
27 13 0.15
28 16 0.18
29 12 0.14
30 10 0.11
31 24 0.28
32 3 0.03
33 4 0.05
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (30 bp):
AAATTCATAAAATAAATTATAAAAATATAA
Found at i:9187876 original size:31 final size:31
Alignment explanation
Indices: 9187728--9187888 Score: 103
Period size: 31 Copynumber: 5.4 Consensus size: 31
9187718 AATATCTTTC
* *
9187728 AAATTCATTAAA-AAATTATTACAAATA-TAA
1 AAATTCATAAAATAAATTA-TAAAAATAGTAA
* *
9187758 AGAATT-ATAGAAAATCATTTA-AAAAATA-TAA
1 A-AATTCAT--AAAATAAATTATAAAAATAGTAA
* *
9187789 AAA-TCAT--TATAAAATATAAAAATA-TAA
1 AAATTCATAAAATAAATTATAAAAATAGTAA
* *
9187816 AAAATCAT-AAA-AACTTATAAAAATAGTAA
1 AAATTCATAAAATAAATTATAAAAATAGTAA
* *
9187845 AAATTCATAAAATAAATTATAAAATTCGTAA
1 AAATTCATAAAATAAATTATAAAAATAGTAA
9187876 ATAATT-ATAAAAT
1 A-AATTCATAAAAT
9187889 TTAAAAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 23
0.73 0.11 0.16
Matches are distributed among these distances:
26 5 0.05
27 13 0.12
28 16 0.15
29 12 0.12
30 10 0.10
31 37 0.36
32 7 0.07
33 4 0.04
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.30
Consensus pattern (31 bp):
AAATTCATAAAATAAATTATAAAAATAGTAA
Found at i:9189815 original size:10 final size:10
Alignment explanation
Indices: 9189802--9189866 Score: 91
Period size: 10 Copynumber: 6.7 Consensus size: 10
9189792 AATTTTATAT
9189802 TTTTTTAATA
1 TTTTTTAATA
9189812 TTTTTTAATA
1 TTTTTTAATA
9189822 TTTTTT-ATA
1 TTTTTTAATA
9189831 TTTTTTCAATA
1 TTTTTT-AATA
*
9189842 TTTTTT-ACA
1 TTTTTTAATA
9189851 -TTTTTAATA
1 TTTTTTAATA
9189860 TTTTTTA
1 TTTTTTA
9189867 TTGATTTATA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
8 5 0.10
9 13 0.27
10 22 0.45
11 9 0.18
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTTTAATA
Found at i:9189825 original size:20 final size:19
Alignment explanation
Indices: 9189802--9189884 Score: 100
Period size: 20 Copynumber: 4.4 Consensus size: 19
9189792 AATTTTATAT
9189802 TTTTTTAATATTTTTTAATA
1 TTTTTT-ATATTTTTTAATA
9189822 TTTTTTATATTTTTTCAATA
1 TTTTTTATATTTTTT-AATA
*
9189842 TTTTTTACA-TTTTTAATA
1 TTTTTTATATTTTTTAATA
**
9189860 TTTTTTAT-TGATTT-ATA
1 TTTTTTATATTTTTTAATA
9189877 TTTTTTAT
1 TTTTTTAT
9189885 CGTTTTTTGT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
17 11 0.19
18 14 0.25
19 14 0.25
20 18 0.32
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.71
Consensus pattern (19 bp):
TTTTTTATATTTTTTAATA
Found at i:9189829 original size:30 final size:29
Alignment explanation
Indices: 9189794--9189865 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 29
9189784 AAATTACAAA
* *
9189794 TTTTATATTTTTTTAATATTTTTTAATATT
1 TTTTATATTTTTTCAATATTTTTT-ACATT
9189824 TTTTATATTTTTTCAATATTTTTTACATT
1 TTTTATATTTTTTCAATATTTTTTACATT
*
9189853 TTTAATATTTTTT
1 TTTTATATTTTTT
9189866 ATTGATTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 16 0.41
30 23 0.59
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (29 bp):
TTTTATATTTTTTCAATATTTTTTACATT
Found at i:9189865 original size:11 final size:11
Alignment explanation
Indices: 9189794--9189847 Score: 71
Period size: 10 Copynumber: 5.3 Consensus size: 11
9189784 AAATTACAAA
9189794 TTTT-ATATTT
1 TTTTAATATTT
9189804 TTTTAATA-TT
1 TTTTAATATTT
9189814 TTTTAATA-TT
1 TTTTAATATTT
9189824 TTTT-ATATTT
1 TTTTAATATTT
*
9189834 TTTCAATATTT
1 TTTTAATATTT
9189845 TTT
1 TTT
9189848 ACATTTTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
9 3 0.08
10 25 0.62
11 12 0.30
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTAATATTT
Found at i:9189883 original size:9 final size:9
Alignment explanation
Indices: 9189794--9189884 Score: 94
Period size: 9 Copynumber: 9.7 Consensus size: 9
9189784 AAATTACAAA
9189794 TTTTATATTT
1 TTTTATA-TT
9189804 TTTTAATATT
1 TTTT-ATATT
9189814 TTTTAATATT
1 TTTT-ATATT
9189824 TTTTATATT
1 TTTTATATT
9189833 TTTTCAATATT
1 TTTT--ATATT
*
9189844 TTTTACATT
1 TTTTATATT
*
9189853 TTTAATATT
1 TTTTATATT
*
9189862 TTTTAT-TG
1 TTTTATATT
*
9189870 ATTTATATT
1 TTTTATATT
9189879 TTTTAT
1 TTTTAT
9189885 CGTTTTTTGT
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
8 6 0.09
9 31 0.45
10 20 0.29
11 12 0.17
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.71
Consensus pattern (9 bp):
TTTTATATT
Found at i:9201807 original size:40 final size:40
Alignment explanation
Indices: 9201746--9201992 Score: 309
Period size: 40 Copynumber: 6.2 Consensus size: 40
9201736 CGGAATTTAG
* * * *
9201746 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
9201786 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
9201826 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
9201866 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
**
9201906 CATGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
9201946 CCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
9201986 CCGGATA
1 CCGGATA
9201993 TCATTCAAAT
Statistics
Matches: 185, Mismatches: 20, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 179 0.97
41 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:9210203 original size:39 final size:40
Alignment explanation
Indices: 9210160--9210380 Score: 283
Period size: 40 Copynumber: 5.7 Consensus size: 40
9210150 AACCACAAGC
* * * * *
9210160 CACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAATCG
1 CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTCG
* *
9210199 CACAAATGCCTTCGGGTCTT-AGCCGGAT-ATAT-ACTCG
1 CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTCG
*
9210236 CACAAATGCCTTC-GGTCTTAGCCCGGATAAAATCACT-G
1 CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTCG
*
9210274 CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAG
1 CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTCG
*
9210314 CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAG
1 CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTCG
* * *
9210354 CATAAATGCCTTCGGGACTTAGCCCGG
1 CACAAATGCCTTCGGGTCTTAACCCGG
9210381 TATCATTCAA
Statistics
Matches: 165, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
36 6 0.04
37 23 0.14
38 26 0.16
39 45 0.27
40 65 0.39
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTCG
Found at i:9214823 original size:18 final size:17
Alignment explanation
Indices: 9214790--9214828 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
9214780 TTGTATAAAT
9214790 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
9214808 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
9214825 TGTG
1 TGTG
9214829 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:9215064 original size:23 final size:23
Alignment explanation
Indices: 9215037--9215112 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
9215027 AGTGTTATTG
9215037 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
9215060 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
9215083 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
9215106 ATCAGTG
1 ATCAGTG
9215113 TGGCCTTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:9222038 original size:18 final size:17
Alignment explanation
Indices: 9222005--9222043 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
9221995 TTGTATAAAT
9222005 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
9222023 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
9222040 TGTG
1 TGTG
9222044 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:9222282 original size:23 final size:23
Alignment explanation
Indices: 9222255--9222330 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
9222245 AGTGTTATTG
9222255 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
9222278 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
9222301 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
9222324 ATCAGTG
1 ATCAGTG
9222331 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:9223757 original size:12 final size:13
Alignment explanation
Indices: 9223740--9223768 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
9223730 CTCATACATG
9223740 AATAAATAAA-GC
1 AATAAATAAATGC
9223752 AATAAATAAATGC
1 AATAAATAAATGC
9223765 AATA
1 AATA
9223769 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:9226700 original size:20 final size:20
Alignment explanation
Indices: 9226675--9226712 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
9226665 ATTATTAAAA
*
9226675 AAGGTTTATATGTTAAAAGG
1 AAGGTTTATATGTCAAAAGG
9226695 AAGGTTTATATGTCAAAA
1 AAGGTTTATATGTCAAAA
9226713 AGGCCCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (20 bp):
AAGGTTTATATGTCAAAAGG
Found at i:9226958 original size:9 final size:9
Alignment explanation
Indices: 9226917--9227023 Score: 51
Period size: 9 Copynumber: 11.7 Consensus size: 9
9226907 ATATTTTCTC
9226917 ATAAAAATGA
1 ATAAAAAT-A
*
9226927 TTAAAAATA
1 ATAAAAATA
*
9226936 CAAAAAAAT-
1 -ATAAAAATA
*
9226945 CTAAAAATA
1 ATAAAAATA
9226954 ATAAAAAGT-
1 ATAAAAA-TA
* *
9226963 ATAAATATT
1 ATAAAAATA
9226972 ATAAAATATA
1 ATAAAA-ATA
*
9226982 A-AAAATCTA
1 ATAAAA-ATA
*
9226991 ATAAATTATA
1 ATAAA-AATA
*
9227001 A-AAAAATT
1 ATAAAAATA
*
9227009 ATAAAATTA
1 ATAAAAATA
9227018 ATAAAA
1 ATAAAA
9227024 CATATTTAAA
Statistics
Matches: 73, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
8 10 0.14
9 40 0.55
10 23 0.32
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (9 bp):
ATAAAAATA
Found at i:9226967 original size:18 final size:17
Alignment explanation
Indices: 9226917--9226985 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 17
9226907 ATATTTTCTC
9226917 ATAAAAATGATTAAAAATA
1 ATAAAAAT-A-TAAAAATA
* *
9226936 CAAAAAAATCTAAAAATA
1 -ATAAAAATATAAAAATA
* *
9226954 ATAAAAAGTATAAATATT
1 ATAAAAA-TATAAAAATA
9226972 AT-AAAATATAAAAA
1 ATAAAAATATAAAAA
9226986 ATCTAATAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
16 7 0.17
17 10 0.24
18 17 0.41
20 7 0.17
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (17 bp):
ATAAAAATATAAAAATA
Found at i:9226977 original size:26 final size:26
Alignment explanation
Indices: 9226948--9227003 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
9226938 AAAAAATCTA
* *
9226948 AAAATAATAAAAAGTATAA-ATATTAT
1 AAAAT-ATAAAAAATATAATAAATTAT
*
9226974 AAAATATAAAAAATCTAATAAATTAT
1 AAAATATAAAAAATATAATAAATTAT
9227000 AAAA
1 AAAA
9227004 AAATTATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (26 bp):
AAAATATAAAAAATATAATAAATTAT
Found at i:9226978 original size:44 final size:44
Alignment explanation
Indices: 9226921--9227004 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
9226911 TTTCTCATAA
9226921 AAATGATTAAAAATACAAAAAAATCTAA-AAATAATAAAAAGTAT
1 AAATGATTAAAAATA-AAAAAAATCTAATAAATAATAAAAAGTAT
* *
9226965 AAAT-ATTATAAAATATAAAAAATCTAATAAATTATAAAAA
1 AAATGATTA-AAAATAAAAAAAATCTAATAAATAATAAAAA
9227005 AATTATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 15 0.42
44 21 0.58
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (44 bp):
AAATGATTAAAAATAAAAAAAATCTAATAAATAATAAAAAGTAT
Found at i:9227033 original size:20 final size:19
Alignment explanation
Indices: 9226969--9227170 Score: 82
Period size: 19 Copynumber: 10.5 Consensus size: 19
9226959 AAGTATAAAT
9226969 ATTATAAAA-TAT-AAAAA
1 ATTATAAAATTATAAAAAA
9226986 ATCTA-ATAAATTATAAAAAA
1 AT-TATA-AAATTATAAAAAA
*
9227006 ATTATAAAATTAATAAAACAT
1 ATTATAAAATT-ATAAAA-AA
* *
9227027 ATT-TAAAATTTTATAAGAA
1 ATTATAAAATTATA-AAAAA
** *
9227046 ATCGTATAATTTTTTAAAAAA
1 AT--TATAAAATTATAAAAAA
* * **
9227067 CTTATAAAATTTTATCAAA
1 ATTATAAAATTATAAAAAA
*
9227086 ATTATTAGAA-TAT-AAAAA
1 ATTA-TAAAATTATAAAAAA
* *
9227104 TTTATCAAAATTAT--TAAA
1 ATTAT-AAAATTATAAAAAA
9227122 A-TATAAAATT-TAATATAAA
1 ATTATAAAATTATAA-A-AAA
*
9227141 CTTATAAAATTTATAAAAAGA
1 ATTATAAAA-TTATAAAAA-A
*
9227162 ATCATAAAA
1 ATTATAAAA
9227171 ACTTGAATCA
Statistics
Matches: 138, Mismatches: 25, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
15 1 0.01
16 6 0.04
17 7 0.05
18 17 0.12
19 39 0.28
20 36 0.26
21 21 0.15
22 11 0.08
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (19 bp):
ATTATAAAATTATAAAAAA
Found at i:9227099 original size:27 final size:27
Alignment explanation
Indices: 9227069--9227132 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
9227059 TTAAAAAACT
*
9227069 TATAAAATTTTATCAAAATTATTAGAA
1 TATAAAATTTTATCAAAATTATTAAAA
*
9227096 TATAAAAATTTATCAAAATTATTAAAA
1 TATAAAATTTTATCAAAATTATTAAAA
9227123 TATAAAATTT
1 TATAAAATTT
9227133 AATATAAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (27 bp):
TATAAAATTTTATCAAAATTATTAAAA
Found at i:9227148 original size:27 final size:26
Alignment explanation
Indices: 9227069--9227150 Score: 80
Period size: 27 Copynumber: 3.0 Consensus size: 26
9227059 TTAAAAAACT
*
9227069 TATAAAATTT-TATCAAAATTATTAGAA
1 TATAAAATTTATAT--AAATTATTAAAA
9227096 TATAAAAATTTATCA-AAATTATTAAAA
1 TAT-AAAATTTAT-ATAAATTATTAAAA
9227123 TATAAAATTTAATATAAACTTA-TAAAA
1 TATAAAATTT-ATATAAA-TTATTAAAA
9227150 T
1 T
9227151 TTATAAAAAG
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
26 8 0.17
27 28 0.58
28 10 0.21
29 1 0.02
30 1 0.02
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (26 bp):
TATAAAATTTATATAAATTATTAAAA
Found at i:9227156 original size:9 final size:9
Alignment explanation
Indices: 9227058--9227158 Score: 59
Period size: 9 Copynumber: 11.0 Consensus size: 9
9227048 CGTATAATTT
*
9227058 TTTAAAAAA
1 TTTATAAAA
*
9227067 CTTATAAAA
1 TTTATAAAA
9227076 TTTTATCAAAA
1 -TTTAT-AAAA
*
9227087 -TTATTAGAA
1 TTTA-TAAAA
*
9227096 TATA-AAAA
1 TTTATAAAA
9227104 TTTATCAAAA
1 TTTAT-AAAA
9227114 -TTATTAAAA
1 TTTA-TAAAA
9227123 --TATAAAA
1 TTTATAAAA
9227130 TTTAATATAAA
1 TTT-ATA-AAA
*
9227141 CTTATAAAA
1 TTTATAAAA
9227150 TTTATAAAA
1 TTTATAAAA
9227159 AGAATCATAA
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
7 5 0.07
8 8 0.11
9 32 0.44
10 18 0.25
11 9 0.12
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (9 bp):
TTTATAAAA
Found at i:9234148 original size:5 final size:5
Alignment explanation
Indices: 9234140--9234166 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
9234130 ATACTTTAAT
9234140 TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TA
9234167 ATATTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:9237636 original size:41 final size:41
Alignment explanation
Indices: 9237522--9237645 Score: 109
Period size: 41 Copynumber: 3.1 Consensus size: 41
9237512 CTTGTACTTG
*
9237522 CACATATTTTACCATGGCCTTGTCATGATCACACACTTTAT
1 CACATATTTTACCATGGCCTTGTCATGATCACACACTTCAT
* * * **
9237563 CAC--A--TTGCCATAG-CTTAG-CTATGGTCTTACACTTGCA-
1 CACATATTTTACCATGGCCTT-GTC-ATGATCACACACTT-CAT
*
9237600 CACATATTTTACCATGGCCTTGTCATGATCACACACTTTAT
1 CACATATTTTACCATGGCCTTGTCATGATCACACACTTCAT
9237641 CACAT
1 CACAT
9237646 TGCCATAGCT
Statistics
Matches: 61, Mismatches: 12, Indels: 20
0.66 0.13 0.22
Matches are distributed among these distances:
36 4 0.07
37 22 0.36
38 1 0.02
39 2 0.03
40 1 0.02
41 27 0.44
42 4 0.07
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (41 bp):
CACATATTTTACCATGGCCTTGTCATGATCACACACTTCAT
Found at i:9237640 original size:78 final size:78
Alignment explanation
Indices: 9237452--9237684 Score: 335
Period size: 78 Copynumber: 3.0 Consensus size: 78
9237442 TTGCATACAC
* * * * * * * * * * **
9237452 TTTTATCATGGCTTTGCCATGACCACATATTTTATCATACTGCCACAGCTTAACTATGGTCTTGT
1 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
9237517 ACTTG--CACATA
66 ACTTGCACACATA
9237528 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
1 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
9237593 ACTTGCACACATA
66 ACTTGCACACATA
*
9237606 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCCATGGTCTTAC
1 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
9237671 ACTTGCACACATA
66 ACTTGCACACATA
9237684 T
1 T
9237685 GTATCTGCCA
Statistics
Matches: 142, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
76 58 0.41
78 84 0.59
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (78 bp):
TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
ACTTGCACACATA
Found at i:9237682 original size:37 final size:37
Alignment explanation
Indices: 9237563--9237682 Score: 100
Period size: 37 Copynumber: 3.1 Consensus size: 37
9237553 CACACTTTAT
*
9237563 CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
1 CACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
* * * * ** *
9237600 CACATATTTTACCATGGCCTT-GTCATGATCACACACTT-TA
1 CAC--A--TTGCCATAG-CTTAGCCATGGTCTTACACTTGCA
9237640 TCACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
1 -CACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
9237678 CACAT
1 CACAT
9237683 ATGTATCTGC
Statistics
Matches: 60, Mismatches: 15, Indels: 16
0.66 0.16 0.18
Matches are distributed among these distances:
36 3 0.05
37 28 0.47
38 1 0.02
39 2 0.03
40 1 0.02
41 22 0.37
42 3 0.05
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (37 bp):
CACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
Found at i:9242047 original size:15 final size:16
Alignment explanation
Indices: 9242020--9242049 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9242010 GTATTTAATT
9242020 ATAATATAAGTAAATA
1 ATAATATAAGTAAATA
9242036 ATAATA-AAGTAAAT
1 ATAATATAAGTAAAT
9242050 TATATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (16 bp):
ATAATATAAGTAAATA
Found at i:9242159 original size:16 final size:17
Alignment explanation
Indices: 9242131--9242174 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 17
9242121 CACGAATAGT
9242131 AGGGAAAGAAAGAAGGAAAA
1 AGGGAAAGAAA-AA-G-AAA
9242151 AGGGAAAGAAAAAGAAA
1 AGGGAAAGAAAAAGAAA
9242168 AGGGAAA
1 AGGGAAA
9242175 ATTAGGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.42
18 1 0.04
19 2 0.08
20 11 0.46
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
AGGGAAAGAAAAAGAAA
Found at i:9243154 original size:17 final size:17
Alignment explanation
Indices: 9243132--9243167 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
9243122 TGTTACACAG
9243132 GTGCTCCCCAAGGTAAT
1 GTGCTCCCCAAGGTAAT
9243149 GTGCTCCCCAAGGTAAT
1 GTGCTCCCCAAGGTAAT
9243166 GT
1 GT
9243168 TACATAGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (17 bp):
GTGCTCCCCAAGGTAAT
Found at i:9245635 original size:37 final size:37
Alignment explanation
Indices: 9245518--9245635 Score: 87
Period size: 37 Copynumber: 3.1 Consensus size: 37
9245508 CATACTTTAT
** * *
9245518 CACATTGCCATAATTTAACTATGGTCTTGCACTTGCA
1 CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
* * * * ** *
9245555 CATATTTTACCATGGCCTT-GCTATGATCACACACTT-TA
1 CACA--TTGCCATAG-CTTAGCTATGGTCTTACACTTGCA
9245593 TCACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
1 -CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
9245631 CACAT
1 CACAT
9245636 ATGTAACTGC
Statistics
Matches: 57, Mismatches: 18, Indels: 12
0.66 0.21 0.14
Matches are distributed among these distances:
36 3 0.05
37 29 0.51
38 2 0.04
39 21 0.37
40 2 0.04
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (37 bp):
CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
Found at i:9245978 original size:9 final size:9
Alignment explanation
Indices: 9245966--9246008 Score: 68
Period size: 9 Copynumber: 4.7 Consensus size: 9
9245956 AATAAAAAAT
9245966 AAAAAAAGA
1 AAAAAAAGA
9245975 AAAAAAATGA
1 AAAAAAA-GA
*
9245985 AGAAAAAGA
1 AAAAAAAGA
9245994 AAAAAAAGA
1 AAAAAAAGA
9246003 AAAAAA
1 AAAAAA
9246009 CTAACCTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 23 0.74
10 8 0.26
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:9245981 original size:19 final size:21
Alignment explanation
Indices: 9245954--9246000 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 21
9245944 AATACAACCC
9245954 AAAATAAAAAAT-AA-AAAAAG
1 AAAA-AAAAAATGAAGAAAAAG
9245974 --AAAAAAAATGAAGAAAAAG
1 AAAAAAAAAATGAAGAAAAAG
9245993 AAAAAAAA
1 AAAAAAAA
9246001 GAAAAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 7 0.30
18 4 0.17
19 6 0.26
21 6 0.26
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (21 bp):
AAAAAAAAAATGAAGAAAAAG
Found at i:9247194 original size:19 final size:19
Alignment explanation
Indices: 9247170--9247207 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
9247160 TTGAGATTGC
9247170 CAACCTATTT-CCTTGAAAT
1 CAACCTATTTGCC-TGAAAT
9247189 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
9247208 TATTCATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:9257790 original size:20 final size:20
Alignment explanation
Indices: 9257756--9257797 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
9257746 AATCATTTAA
** *
9257756 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
9257776 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
9257796 AT
1 AT
9257798 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:9259401 original size:28 final size:28
Alignment explanation
Indices: 9259343--9259404 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
9259333 TAACAATTAT
***
9259343 AAATGTAAATGACTTTTTATCAAAAAAA
1 AAATGTAAATGACTTAAAATCAAAAAAA
9259371 AAATGTAAATGACTTAAAAT-AAATAATAA
1 AAATGTAAATGACTTAAAATCAAA-AA-AA
9259400 AAATG
1 AAATG
9259405 AGTGATGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 3 0.10
28 19 0.66
29 7 0.24
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.29
Consensus pattern (28 bp):
AAATGTAAATGACTTAAAATCAAAAAAA
Found at i:9259686 original size:22 final size:22
Alignment explanation
Indices: 9259642--9259691 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
9259632 TCTATATATA
*
9259642 TTTTTTAAAATTAAATATTAATT
1 TTTTTTAAAA-TAAATATAAATT
9259665 TATTTTTAAAA-AAATATAAATT
1 T-TTTTTAAAATAAATATAAATT
9259687 TTTTT
1 TTTTT
9259692 ATTTGATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 4 0.16
22 11 0.44
23 1 0.04
24 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTTTAAAATAAATATAAATT
Found at i:9263910 original size:7 final size:7
Alignment explanation
Indices: 9263898--9263922 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9263888 CTTTCATATT
9263898 TTCTTTA
1 TTCTTTA
9263905 TTCTTTA
1 TTCTTTA
9263912 TTCTTTA
1 TTCTTTA
9263919 TTCT
1 TTCT
9263923 CTCTATCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (7 bp):
TTCTTTA
Found at i:9268955 original size:24 final size:24
Alignment explanation
Indices: 9268928--9269057 Score: 181
Period size: 24 Copynumber: 5.4 Consensus size: 24
9268918 AAAGGCTGTC
9268928 AGGAGAAGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
*
9268952 AGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
*
9268976 GGGA-AAGGATTTAGGAGCTGATAA
1 AGGAGAA-GATTTAGGAGCTGATAA
* *
9269000 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
9269024 GGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGATAA
9269048 AGGAGCAAGA
1 AGGAG-AAGA
9269058 GTTGGCCGGC
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 1 0.01
24 90 0.94
25 5 0.05
ACGTcount: A:0.38, C:0.05, G:0.38, T:0.19
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATAA
Found at i:9269006 original size:48 final size:48
Alignment explanation
Indices: 9268929--9269050 Score: 210
Period size: 48 Copynumber: 2.5 Consensus size: 48
9268919 AAGGCTGTCA
*
9268929 GGAGAAGATTTAGGAGCTGATAAAGGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGCTGATAAG
9268977 GGA-AAGGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGCTGATAAG
1 GGAGAA-GATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGCTGATAAG
9269025 GGAGAAGATTTAGGAGCTGATCAAGG
1 GGAGAAGATTTAGGAGCTGAT-AAGG
9269051 AGCAAGAGTT
Statistics
Matches: 70, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
47 2 0.03
48 62 0.89
49 6 0.09
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (48 bp):
GGAGAAGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGCTGATAAG
Found at i:9270474 original size:27 final size:26
Alignment explanation
Indices: 9270434--9270544 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
9270424 AGGAAGCGTC
* *
9270434 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGTT
*
9270461 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCAAAT-TATCTGTT
* *
9270488 CTGGTGGCTCTACTACAATTATCTGTT
1 CTGGTGGCTCTGCCA-AATTATCTGTT
* * *
9270515 CTGGTGACTCTGCCACATTATCTATT
1 CTGGTGGCTCTGCCAAATTATCTGTT
9270541 CTGG
1 CTGG
9270545 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
26 15 0.21
27 54 0.76
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGTT
Found at i:9274290 original size:18 final size:18
Alignment explanation
Indices: 9274267--9274306 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
9274257 CAGACCACAC
*
9274267 GCCTGTGCCTATTTAATA
1 GCCTGTGCCTATTTAACA
9274285 GCCTGTGCCTATTTAACA
1 GCCTGTGCCTATTTAACA
9274303 GCCT
1 GCCT
9274307 TGACCACGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (18 bp):
GCCTGTGCCTATTTAACA
Found at i:9287586 original size:25 final size:25
Alignment explanation
Indices: 9287539--9287704 Score: 87
Period size: 25 Copynumber: 6.8 Consensus size: 25
9287529 CATACAAGCA
* * *
9287539 CATA-AACGGGAAGTTCTTTTGAGC
1 CATATAACGGGAAGCTCATGTGAGC
*
9287563 TATATAACGGGAAGCTCATGTGAGC
1 CATATAACGGGAAGCTCATGTGAGC
* * *
9287588 CATGTAACGAGAAGCTC-TGGAGAGC
1 CATATAACGGGAAGCTCAT-GTGAGC
* * **
9287613 CAT-TAATGGAAAGCTCATACGAG-
1 CATATAACGGGAAGCTCATGTGAGC
* * *
9287636 CAAATATCGGGAAGTTCAATG-GAGC
1 CATATAACGGGAAGCTC-ATGTGAGC
* * *
9287661 CA-ATATCGGGAAGAT-ATGGAGAGC
1 CATATAACGGGAAGCTCAT-GTGAGC
9287685 CAT-TAATCGGGAAGCTCATG
1 CATATAA-CGGGAAGCTCATG
9287705 AAAGAGCCTT
Statistics
Matches: 109, Mismatches: 22, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
22 2 0.02
23 3 0.03
24 49 0.45
25 53 0.49
26 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.22
Consensus pattern (25 bp):
CATATAACGGGAAGCTCATGTGAGC
Found at i:9287839 original size:24 final size:24
Alignment explanation
Indices: 9287812--9287882 Score: 70
Period size: 25 Copynumber: 2.9 Consensus size: 24
9287802 GGATGCTCCG
* *
9287812 AAGAGCTATTAAAGGGAAGCTCGT
1 AAGAACTATTAAAGGGAAGCTCAT
* *
9287836 AAGAACCATATAACGGGAAGCTCAT
1 AAGAACTAT-TAAAGGGAAGCTCAT
* * *
9287861 GAGAACTAGTAAAGGGATGCTC
1 AAGAACTATTAAAGGGAAGCTC
9287883 TTTCGATTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 18 0.49
25 19 0.51
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.18
Consensus pattern (24 bp):
AAGAACTATTAAAGGGAAGCTCAT
Found at i:9289258 original size:28 final size:28
Alignment explanation
Indices: 9289226--9289281 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
9289216 CGGTGTTGCC
9289226 TCCGAAACAAGATCTATTGAAAATTCAA
1 TCCGAAACAAGATCTATTGAAAATTCAA
*
9289254 TCCGAAACAAGATCTTTTGAAAATTCAA
1 TCCGAAACAAGATCTATTGAAAATTCAA
9289282 CTTCCCTGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.27
Consensus pattern (28 bp):
TCCGAAACAAGATCTATTGAAAATTCAA
Found at i:9290325 original size:42 final size:42
Alignment explanation
Indices: 9290265--9290348 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
9290255 TTTCTTTGAT
* *
9290265 TTCTTCGAAGCTGGCTGATATGACTTTCCTATCATTCTCTTA
1 TTCTTCAAAGCTGACTGATATGACTTTCCTATCATTCTCTTA
* *
9290307 TTCTTCAAAGCTGACTGATATGACTTTTCTGTCATTCTCTTA
1 TTCTTCAAAGCTGACTGATATGACTTTCCTATCATTCTCTTA
9290349 CTTGTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (42 bp):
TTCTTCAAAGCTGACTGATATGACTTTCCTATCATTCTCTTA
Found at i:9292719 original size:25 final size:24
Alignment explanation
Indices: 9292677--9292748 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
9292667 GAATCTTTTT
* *
9292677 TGAGCCATAAAACAGGAAGCTCATG
1 TGAGCCAT-TAACGGGAAGCTCATG
*
9292702 TGAGCCATGTAACGGGAAGCTTC-GG
1 TGAGCCAT-TAACGGGAAGC-TCATG
*
9292727 AGAGCCA-TAACGGGAAGCTCAT
1 TGAGCCATTAACGGGAAGCTCAT
9292749 ACGAGCCTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.05
23 11 0.28
25 24 0.62
26 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (24 bp):
TGAGCCATTAACGGGAAGCTCATG
Found at i:9292754 original size:23 final size:23
Alignment explanation
Indices: 9292691--9292755 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 23
9292681 CCATAAAACA
*
9292691 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCAT-AGAGCCA-GTAACG
**
9292716 GGAAGCTTCGGAGAGCCA-TAACG
1 GGAAGC-TCATAGAGCCAGTAACG
9292739 GGAAGCTCATACGAGCC
1 GGAAGCTCATA-GAGCC
9292756 TATATCAGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
22 3 0.09
23 16 0.48
25 12 0.36
26 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.32, T:0.15
Consensus pattern (23 bp):
GGAAGCTCATAGAGCCAGTAACG
Found at i:9305277 original size:25 final size:25
Alignment explanation
Indices: 9305248--9305297 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
9305238 TAATCACTTA
9305248 GTGTATCAACAAATTTTGTTAGAGT
1 GTGTATCAACAAATTTTGTTAGAGT
9305273 GTGTATCAACAAATTTTGTTAGAGT
1 GTGTATCAACAAATTTTGTTAGAGT
9305298 TTTTAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (25 bp):
GTGTATCAACAAATTTTGTTAGAGT
Found at i:9305914 original size:27 final size:25
Alignment explanation
Indices: 9305884--9305937 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
9305874 CCTCCAGAAT
*
9305884 TAGATAAGTGTGATCAAACCACCATAA
1 TAGATAAGTG-GATAAAACCACCA-AA
* *
9305911 TAGATATGTGGTTAAAACCACCAAA
1 TAGATAAGTGGATAAAACCACCAAA
9305936 TA
1 TA
9305938 AGGTAGATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 11 0.46
27 9 0.38
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (25 bp):
TAGATAAGTGGATAAAACCACCAAA
Found at i:9306515 original size:18 final size:18
Alignment explanation
Indices: 9306492--9306526 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9306482 TATTTATTAG
9306492 GTTGGTTAAATTAGATGA
1 GTTGGTTAAATTAGATGA
9306510 GTTGGTTAAATTAGATG
1 GTTGGTTAAATTAGATG
9306527 CAGGCTCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (18 bp):
GTTGGTTAAATTAGATGA
Found at i:9309562 original size:18 final size:18
Alignment explanation
Indices: 9309539--9309573 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9309529 AGAATTATAG
9309539 ATCAAAATCTAAAACAAT
1 ATCAAAATCTAAAACAAT
9309557 ATCAAAATCTAAAACAA
1 ATCAAAATCTAAAACAA
9309574 GAGCAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.63, C:0.17, G:0.00, T:0.20
Consensus pattern (18 bp):
ATCAAAATCTAAAACAAT
Found at i:9312318 original size:41 final size:40
Alignment explanation
Indices: 9312273--9312451 Score: 209
Period size: 41 Copynumber: 4.4 Consensus size: 40
9312263 GCGTTTTACC
* *
9312273 AAAAACGCCACTAAAACCAGAGCAATAGCGGCG-TTTTAGTA
1 AAAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTT-G-A
* ** *
9312314 AAAAACGCCGCGAAAAATAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTTGA
* *
9312354 AAAAACACCG-TGAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCT--AAAACCAGAGCATTAGCGGCGCTTTTGA
* *
9312395 AAAAACGCCGCTAAAAACTAGAGCATTAGCAGCGCTTTTGA
1 AAAAACGCCGCT-AAAACCAGAGCATTAGCGGCGCTTTTGA
9312436 AAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
9312452 GTCATATAAC
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
40 13 0.11
41 102 0.85
42 5 0.04
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.17
Consensus pattern (40 bp):
AAAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTTGA
Found at i:9312384 original size:82 final size:82
Alignment explanation
Indices: 9312285--9312441 Score: 237
Period size: 82 Copynumber: 1.9 Consensus size: 82
9312275 AAACGCCACT
*
9312285 AAAACCAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGCGAAAAA-TAGAGCATTAGCGGCGC
1 AAAACCAGAGCAATAGCGGCGCTTTT-G-AAAAAACGCCGCGAAAAACTAGAGCATTAGCAGCGC
*
9312348 TTTTGGAAAAACACCGTGA
64 TTTTGAAAAAACACCGTGA
* * *
9312367 AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACTAGAGCATTAGCAGCGCTT
1 AAAACCAGAGCAATAGCGGCGCTTTTGAAAAAACGCCGCGAAAAACTAGAGCATTAGCAGCGCTT
9312432 TTGAAAAAAC
66 TTGAAAAAAC
9312442 GCCGCTAAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
81 16 0.24
82 48 0.71
83 4 0.06
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (82 bp):
AAAACCAGAGCAATAGCGGCGCTTTTGAAAAAACGCCGCGAAAAACTAGAGCATTAGCAGCGCTT
TTGAAAAAACACCGTGA
Found at i:9312623 original size:7 final size:7
Alignment explanation
Indices: 9312608--9312705 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
9312598 TTAATTATCA
*
9312608 TTATAGT
1 TTATGGT
9312615 TTATGGT
1 TTATGGT
9312622 TTATGGT
1 TTATGGT
* *
9312629 TTAAGAT
1 TTATGGT
* *
9312636 ATATAGT
1 TTATGGT
*
9312643 TTAGGGT
1 TTATGGT
*
9312650 TTAAGGT
1 TTATGGT
9312657 TTATGAGT
1 TTATG-GT
9312665 TAACTATGGT
1 T---TATGGT
* *
9312675 TTAAGAT
1 TTATGGT
*
9312682 ATATGGT
1 TTATGGT
*
9312689 TTAGGGT
1 TTATGGT
*
9312696 TTAAGGT
1 TTATGGT
9312703 TTA
1 TTA
9312706 GGAGTTAACT
Statistics
Matches: 67, Mismatches: 20, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
7 57 0.85
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:9312644 original size:21 final size:21
Alignment explanation
Indices: 9312620--9312700 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
9312610 ATAGTTTATG
*
9312620 GTTTATGGTTTAAGATATATA
1 GTTTAGGGTTTAAGATATATA
* *
9312641 GTTTAGGGTTTAAGGTTTATGA
1 GTTTAGGGTTTAAGATATAT-A
* *
9312663 GTTAACTATGGTTTAAGATATATG
1 GTT---TAGGGTTTAAGATATATA
9312687 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
9312701 GTTTAGGAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 27 0.56
22 4 0.08
24 3 0.06
25 14 0.29
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATA
Found at i:9312675 original size:46 final size:46
Alignment explanation
Indices: 9312623--9312716 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
9312613 GTTTATGGTT
*
9312623 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
*
9312669 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
9312715 TA
1 TA
9312717 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.43
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:9312828 original size:36 final size:36
Alignment explanation
Indices: 9312776--9312871 Score: 101
Period size: 36 Copynumber: 2.7 Consensus size: 36
9312766 AGGGTTTAAT
9312776 GGTT-AGGGTT-AGAGTTTAAGGTGTAAGTGTTT-GG
1 GGTTAAGGGTTAAGAGTTTAAGGT-TAAGTGTTTAGG
* *
9312810 GGTTAAGGGTTAAGAGTTT-AGAGTTTAGTGTTTATG
1 GGTTAAGGGTTAAGAGTTTAAG-GTTAAGTGTTTAGG
* *
9312846 GGATAGGGGTTAAGAGGTTTAAGGTT
1 GGTTAAGGGTTAAGA-GTTTAAGGTT
9312872 TAGATTAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
34 4 0.08
35 16 0.31
36 23 0.44
37 7 0.13
38 2 0.04
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.38
Consensus pattern (36 bp):
GGTTAAGGGTTAAGAGTTTAAGGTTAAGTGTTTAGG
Found at i:9312986 original size:22 final size:22
Alignment explanation
Indices: 9312955--9313017 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
9312945 AAAACAAGTT
*
9312955 TTAAGAGGATAGGGGTTAGGCG
1 TTAAGGGGATAGGGGTTAGGCG
*
9312977 TTAAGGGGATAAGGGTTAGGCG
1 TTAAGGGGATAGGGGTTAGGCG
*
9312999 TTAA-GGGATAGAGGTTAGG
1 TTAAGGGGATAGGGGTTAGG
9313018 GGTTTATGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 13 0.35
22 24 0.65
ACGTcount: A:0.29, C:0.03, G:0.44, T:0.24
Consensus pattern (22 bp):
TTAAGGGGATAGGGGTTAGGCG
Found at i:9313028 original size:7 final size:7
Alignment explanation
Indices: 9313018--9313121 Score: 59
Period size: 7 Copynumber: 14.7 Consensus size: 7
9313008 AGAGGTTAGG
9313018 GGTTTAT
1 GGTTTAT
9313025 GGTTTAT
1 GGTTTAT
*
9313032 GAGTTAAT
1 G-GTTTAT
** *
9313040 ATTTTAA
1 GGTTTAT
9313047 GGTTTAT
1 GGTTTAT
*
9313054 GGATTAT
1 GGTTTAT
9313061 GGTTTAT
1 GGTTTAT
*
9313068 GGATTAT
1 GGTTTAT
*
9313075 -GTGTTAG
1 GGT-TTAT
*
9313082 GGTTTAA
1 GGTTTAT
*
9313089 GGTTTAG
1 GGTTTAT
*
9313096 GGGTTAT
1 GGTTTAT
* *
9313103 GTGTTAAG
1 G-GTTTAT
9313111 GGTTTA-
1 GGTTTAT
9313117 GGTTT
1 GGTTT
9313122 TAAGGGTTAA
Statistics
Matches: 72, Mismatches: 21, Indels: 9
0.71 0.21 0.09
Matches are distributed among these distances:
6 6 0.08
7 55 0.76
8 11 0.15
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (7 bp):
GGTTTAT
Found at i:9313101 original size:21 final size:21
Alignment explanation
Indices: 9313042--9313161 Score: 57
Period size: 21 Copynumber: 5.6 Consensus size: 21
9313032 GAGTTAATAT
* * *
9313042 TTTAAGGTTTATGGATTATGG
1 TTTAAGGTTTAGGGGTTAGGG
* * * *
9313063 TTTATGGATTATGTGTTAGGG
1 TTTAAGGTTTAGGGGTTAGGG
*
9313084 TTTAAGGTTTAGGGGTTA-TG
1 TTTAAGGTTTAGGGGTTAGGG
**
9313104 TGTTAAGGGTTTAGGTTTTAAGGG
1 T-TTAA-GGTTTAGGGGTT-AGGG
** *
9313128 -TTAAGGGATATGGGTTATGGG
1 TTTAAGGTTTAGGGGTTA-GGG
9313149 TTT-AGGATTTAGG
1 TTTAAGG-TTTAGG
9313162 ATTTAAGATT
Statistics
Matches: 71, Mismatches: 21, Indels: 13
0.68 0.20 0.12
Matches are distributed among these distances:
20 3 0.04
21 47 0.66
22 19 0.27
23 1 0.01
24 1 0.01
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (21 bp):
TTTAAGGTTTAGGGGTTAGGG
Found at i:9313102 original size:28 final size:28
Alignment explanation
Indices: 9313061--9313130 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
9313051 TATGGATTAT
* *
9313061 GGTTTATGGATTATGTGTT-AGGGTTTAA
1 GGTTTAAGGGTTATGTGTTAAGGGTTT-A
*
9313089 GGTTTAGGGGTTATGTGTTAAGGGTTTA
1 GGTTTAAGGGTTATGTGTTAAGGGTTTA
9313117 GGTTTTAAGGGTTA
1 GG-TTTAAGGGTTA
9313131 AGGGATATGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.54
29 17 0.46
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (28 bp):
GGTTTAAGGGTTATGTGTTAAGGGTTTA
Found at i:9313112 original size:15 final size:15
Alignment explanation
Indices: 9313071--9313129 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
9313061 GGTTTATGGA
9313071 TTATGTGTT-AGGGT
1 TTATGTGTTAAGGGT
* * *
9313085 TTAAG-GTTTAGGGG
1 TTATGTGTTAAGGGT
9313099 TTATGTGTTAAGGGT
1 TTATGTGTTAAGGGT
* *
9313114 TTAGGTTTTAAGGGT
1 TTATGTGTTAAGGGT
9313129 T
1 T
9313130 AAGGGATATG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
13 3 0.08
14 12 0.33
15 21 0.58
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.46
Consensus pattern (15 bp):
TTATGTGTTAAGGGT
Found at i:9313124 original size:36 final size:36
Alignment explanation
Indices: 9313078--9313159 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 36
9313068 GGATTATGTG
* * * * *
9313078 TTAGGGTTTAAGGTTTAGGGGTTATGTGTTAAGGGT
1 TTAGGATTTAAGGGTTAAGGGATATGGGTTAAGGGT
* *
9313114 TTAGGTTTTAAGGGTTAAGGGATATGGGTTATGGGT
1 TTAGGATTTAAGGGTTAAGGGATATGGGTTAAGGGT
9313150 TTAGGATTTA
1 TTAGGATTTA
9313160 GGATTTAAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (36 bp):
TTAGGATTTAAGGGTTAAGGGATATGGGTTAAGGGT
Found at i:9313465 original size:73 final size:71
Alignment explanation
Indices: 9313383--9313592 Score: 304
Period size: 67 Copynumber: 3.0 Consensus size: 71
9313373 TGGCTTCCAA
* *
9313383 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCG-TTTTTAAAAAAACACCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
9313447 AAAAACTC
66 AAAAA--C
* *
9313455 TATTATAACAAATAAAAATAAATATAAAAATTAAAAGATTAGTGGCGTTTTTTTAAAAAACGCCA
1 -ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCA
9313520 CAAAAAC
65 CAAAAAC
* *
9313527 ACTAT----AATAAAAATAAATATGAAAATTAAGAGATTAGTGACGTTTTTTTAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
9313588 AAAAA
66 AAAAA
9313593 ACACTATGAA
Statistics
Matches: 128, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
67 58 0.45
71 4 0.03
72 1 0.01
73 44 0.34
74 21 0.16
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.27
Consensus pattern (71 bp):
ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAAACGCCAC
AAAAAC
Found at i:9313753 original size:18 final size:18
Alignment explanation
Indices: 9313730--9313773 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
9313720 CCCAAAATTG
* *
9313730 ATTTCCCC-AATTCTCTAC
1 ATTTCCCCTAA-TCCCTAA
9313748 ATTTCCCCTAATCCCTAA
1 ATTTCCCCTAATCCCTAA
9313766 ATTTCCCC
1 ATTTCCCC
9313774 CAAAATTCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.23, C:0.41, G:0.00, T:0.36
Consensus pattern (18 bp):
ATTTCCCCTAATCCCTAA
Found at i:9315740 original size:23 final size:22
Alignment explanation
Indices: 9315685--9315740 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
9315675 CTATTACGTA
*
9315685 GATATAACTGC-TTGGAGACAC
1 GATATAACTGCAGTGGAGACAC
***
9315706 GATATGTTTGCAAGTGGAGACAC
1 GATATAACTGC-AGTGGAGACAC
9315729 GATATAACTGCA
1 GATATAACTGCA
9315741 TAATTTGGCT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
21 8 0.31
22 1 0.04
23 17 0.65
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (22 bp):
GATATAACTGCAGTGGAGACAC
Found at i:9318001 original size:17 final size:18
Alignment explanation
Indices: 9317979--9318012 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
9317969 TACTTGTGGG
9317979 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
9317996 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
9318013 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:9318389 original size:43 final size:43
Alignment explanation
Indices: 9318324--9318422 Score: 153
Period size: 43 Copynumber: 2.3 Consensus size: 43
9318314 GATTATTATT
* * *
9318324 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGATC
* *
9318367 TTTAGCAGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGATC
9318410 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
9318423 TTTTCAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGATC
Found at i:9320090 original size:15 final size:15
Alignment explanation
Indices: 9320072--9320100 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9320062 GACTCCATTT
9320072 TATTAGGATAATTAA
1 TATTAGGATAATTAA
9320087 TATTAGGATAATTA
1 TATTAGGATAATTA
9320101 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (15 bp):
TATTAGGATAATTAA
Found at i:9320104 original size:12 final size:13
Alignment explanation
Indices: 9320070--9320112 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 13
9320060 AAGACTCCAT
9320070 TTTATTAGGATAA
1 TTTATTAGGATAA
9320083 TTAATATTAGGATAA
1 TT--TATTAGGATAA
*
9320098 -TTATTAGGATTA
1 TTTATTAGGATAA
9320110 TTT
1 TTT
9320113 CAATTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 10 0.38
13 4 0.15
14 1 0.04
15 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TTTATTAGGATAA
Found at i:9320153 original size:20 final size:20
Alignment explanation
Indices: 9320125--9320172 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
9320115 ATTTTAAAAT
*
9320125 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TGTA
9320144 TTTATCTTTAATTAATTGTA
1 TTTATCTTTAATTAATTGTA
9320164 TTTATCTTT
1 TTTATCTTT
9320173 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTGTA
Found at i:9320743 original size:19 final size:19
Alignment explanation
Indices: 9320719--9320755 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
9320709 TAGAAGCTAG
9320719 AATCTCGCCACATAAGAAC
1 AATCTCGCCACATAAGAAC
9320738 AATCTCGCCACATAAGAA
1 AATCTCGCCACATAAGAA
9320756 ACTTTCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.30, G:0.11, T:0.16
Consensus pattern (19 bp):
AATCTCGCCACATAAGAAC
Found at i:9323858 original size:36 final size:36
Alignment explanation
Indices: 9323804--9323886 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 36
9323794 TAAAGTTCCA
* * *
9323804 AGCTCACGTGAAGTTGCGAGCTCAAGC-AAATA-TGTG
1 AGCTCACCTAAAGCTGCGAGCTCAA-CTAAA-AGTGTG
*
9323840 AGCTCACCTAAAGCTGCGAGCTTAACTAAAAGTGTG
1 AGCTCACCTAAAGCTGCGAGCTCAACTAAAAGTGTG
9323876 AGCTCAACCTA
1 AGCTC-ACCTA
9323887 GTTGCAAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 2 0.05
36 33 0.82
37 5 0.12
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.22
Consensus pattern (36 bp):
AGCTCACCTAAAGCTGCGAGCTCAACTAAAAGTGTG
Found at i:9325331 original size:10 final size:10
Alignment explanation
Indices: 9325316--9325365 Score: 75
Period size: 10 Copynumber: 5.0 Consensus size: 10
9325306 ATATATTTTC
9325316 ATTTATCTTT
1 ATTTATCTTT
9325326 ATTTATCTTT
1 ATTTATCTTT
*
9325336 AATTATCTTT
1 ATTTATCTTT
9325346 ATTTAT-TTGT
1 ATTTATCTT-T
9325356 ATTTATCTTT
1 ATTTATCTTT
9325366 TAGAATTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 32 0.89
11 2 0.06
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:9326057 original size:17 final size:18
Alignment explanation
Indices: 9326025--9326058 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9326015 TTTTCCTCAT
9326025 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
9326043 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
9326059 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:9329481 original size:21 final size:20
Alignment explanation
Indices: 9329449--9329487 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
9329439 ATAAATAATA
*
9329449 TAAACAAATCAAATTTGAAT
1 TAAACAAATCAAAATTGAAT
*
9329469 TAAATCAATTCAAAATTGA
1 TAAA-CAAATCAAAATTGA
9329488 TTCAATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
TAAACAAATCAAAATTGAAT
Found at i:9338521 original size:17 final size:17
Alignment explanation
Indices: 9338499--9338535 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
9338489 CTAAATAAGA
9338499 AAACATCTCAGAATAAT
1 AAACATCTCAGAATAAT
9338516 AAACATCTCAGAATAAT
1 AAACATCTCAGAATAAT
9338533 AAA
1 AAA
9338536 GAATACAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.16, G:0.05, T:0.22
Consensus pattern (17 bp):
AAACATCTCAGAATAAT
Found at i:9346319 original size:21 final size:20
Alignment explanation
Indices: 9346295--9346333 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9346285 CCGTTTTGAT
9346295 TTCGTACTTTGGCCTATTTTC
1 TTCGT-CTTTGGCCTATTTTC
*
9346316 TTCGTTTTTGGCCTATTT
1 TTCGTCTTTGGCCTATTT
9346334 CTCGTTCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.08, C:0.21, G:0.15, T:0.56
Consensus pattern (20 bp):
TTCGTCTTTGGCCTATTTTC
Found at i:9350742 original size:24 final size:24
Alignment explanation
Indices: 9350709--9350762 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
9350699 TATAATTTAT
9350709 TTATTA-AAAAAACTA-TACATATA
1 TTATTATAAAAAA-TACTACATATA
*
9350732 TTATTATAAAAAATACTACTTATA
1 TTATTATAAAAAATACTACATATA
*
9350756 TTTTTAT
1 TTATTAT
9350763 CATATATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (24 bp):
TTATTATAAAAAATACTACATATA
Found at i:9350873 original size:13 final size:13
Alignment explanation
Indices: 9350845--9350894 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
9350835 ATTATCTTAC
*
9350845 ATTTTAAATATATT
1 ATTTTATAT-TATT
9350859 ATTTTATATTATT
1 ATTTTATATTATT
* *
9350872 ATTTCACATTATT
1 ATTTTATATTATT
9350885 ATTTATATAT
1 ATTT-TATAT
9350895 GGTTATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTTTATATTATT
Found at i:9350940 original size:24 final size:23
Alignment explanation
Indices: 9350913--9350970 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 23
9350903 TATTTTTGCT
9350913 TATATTATATATTAATATATATAC
1 TATATTATATATT-ATATATATAC
* *
9350937 TATA-CAT-TATT-TTTATATAC
1 TATATTATATATTATATATATAC
9350957 -ATATTATATATTAT
1 TATATTATATATTAT
9350971 TCTAGATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 4 0.14
22 5 0.18
23 2 0.07
24 4 0.14
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.53
Consensus pattern (23 bp):
TATATTATATATTATATATATAC
Found at i:9350971 original size:24 final size:25
Alignment explanation
Indices: 9350913--9350971 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
9350903 TATTTTTGCT
*
9350913 TATATTATATATTAATATATATACTA
1 TATATTAT-TATTAATATACATACTA
* * *
9350939 TACATTATT-TTTATATACATATTA
1 TATATTATTATTAATATACATACTA
9350963 TATATTATT
1 TATATTATT
9350972 CTAGATTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 20 0.71
25 1 0.04
26 7 0.25
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATTATTATTAATATACATACTA
Found at i:9351002 original size:21 final size:20
Alignment explanation
Indices: 9350944--9351013 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
9350934 TACTATACAT
*
9350944 TATTTTTATATACATATTATA
1 TATTTTTTTATAC-TATTATA
* * * * *
9350965 TATTATTCTAGATTATTATGT
1 TATTTTTTTATACTATTAT-A
9350986 TATTTTTTTATACTATTATA
1 TATTTTTTTATACTATTATA
9351006 TATTTTTT
1 TATTTTTT
9351014 ATCCGTATAT
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
20 14 0.37
21 24 0.63
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (20 bp):
TATTTTTTTATACTATTATA
Found at i:9351528 original size:34 final size:34
Alignment explanation
Indices: 9351476--9351540 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
9351466 TGTACATTGA
* *
9351476 TATTGTATTACTTTTTTTTTTGTATGTCATGTAG
1 TATTGTATTACTTCTTTTTTTGTATATCATGTAG
*
9351510 TATTTTATTACTTCTTTTTTTGTATATCATG
1 TATTGTATTACTTCTTTTTTTGTATATCATG
9351541 CATTATTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.18, C:0.08, G:0.11, T:0.63
Consensus pattern (34 bp):
TATTGTATTACTTCTTTTTTTGTATATCATGTAG
Found at i:9351548 original size:34 final size:34
Alignment explanation
Indices: 9351476--9351553 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
9351466 TGTACATTGA
* * * *
9351476 TATTGTATTACTTTTTTTTTTGTATGTCATGTAG
1 TATTTTATTACTTCTTTTTTTGTATATCATGCAG
*
9351510 TATTTTATTACTTCTTTTTTTGTATATCATGCAT
1 TATTTTATTACTTCTTTTTTTGTATATCATGCAG
*
9351544 TATTTAATTA
1 TATTTTATTA
9351554 TTGCAATGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.22, C:0.08, G:0.09, T:0.62
Consensus pattern (34 bp):
TATTTTATTACTTCTTTTTTTGTATATCATGCAG
Found at i:9355108 original size:15 final size:15
Alignment explanation
Indices: 9355072--9355121 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
9355062 GATATTCTTT
9355072 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
9355086 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
9355102 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
9355115 TTTGCAT
1 TTTGCAT
9355122 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:9363500 original size:210 final size:210
Alignment explanation
Indices: 9363138--9363710 Score: 968
Period size: 210 Copynumber: 2.7 Consensus size: 210
9363128 CTTCATCGGG
*
9363138 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATCGAAGATATAGCTG
* * *
9363203 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATGTAAGATGATTTGTCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* *
9363268 AAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
*
9363333 AATTTTTACGCTGAA
196 AATTTTTACACTGAA
*
9363348 GCAGATCCAAGATGACAAATCTTATCTCTCTGTATTCGACGGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATCGAAGATATAGCTG
*
9363413 ATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCGTCTCTGTATTGTCAGA
66 ATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* *
9363478 GAACAAATCAAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTCACCTTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
* *
9363543 GATTTTTACATTGAA
196 AATTTTTACACTGAA
* * *
9363558 GCAGATCCAAGATGATAGATCTTATCTCTCTGTATTCAAAGCGGGGAGCAGATCAAAGATATAGC
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTC-GA-CGGGGAGCAGATCGAAGATATAGC
9363623 TGATTTGGCTTTCACT-TGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
64 TGATTTGGCTTTCA-TGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
9363687 AGAGAACAAATCGAAGTCTGGCAT
128 AGAGAACAAATCGAAGTCTGGCAT
9363711 CTCTACATTC
Statistics
Matches: 341, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
210 232 0.68
211 1 0.00
212 107 0.31
213 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (210 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATCGAAGATATAGCTG
ATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
AATTTTTACACTGAA
Found at i:9365728 original size:24 final size:25
Alignment explanation
Indices: 9365682--9365735 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
9365672 TATAATTTAT
9365682 TTATTAAAAATACTATACATATATTA
1 TTATTAAAAATAC-ATACATATATTA
* *
9365708 TTATTAAAAATAC-TACTTATATTT
1 TTATTAAAAATACATACATATATTA
9365732 TTAT
1 TTAT
9365736 CATATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 13 0.50
26 13 0.50
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATTAAAAATACATACATATATTA
Found at i:9365847 original size:16 final size:15
Alignment explanation
Indices: 9365818--9365863 Score: 67
Period size: 16 Copynumber: 3.0 Consensus size: 15
9365808 ATTATCTTAC
9365818 ATTTTAATTA-TATT
1 ATTTTAATTATTATT
9365832 ATTTTATATTATTATT
1 ATTTTA-ATTATTATT
9365848 ATTTTACATTATTATT
1 ATTTTA-ATTATTATT
9365864 TATATATGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 6 0.21
15 4 0.14
16 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTTAATTATTATT
Found at i:9365944 original size:24 final size:24
Alignment explanation
Indices: 9365906--9365951 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9365896 TATATTAATA
*
9365906 TATATATATACTATACATTATTTT
1 TATATACATACTATACATTATTTT
* *
9365930 TATATACATATTATATATTATT
1 TATATACATACTATACATTATT
9365952 CTAGATTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATACATACTATACATTATTTT
Found at i:9365990 original size:18 final size:19
Alignment explanation
Indices: 9365927--9365989 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
9365917 TATACATTAT
9365927 TTTTATATACATATTATATA
1 TTTTATATAC-TATTATATA
* * * *
9365947 TTATTCTAGATTATTATGTTA
1 TT-TTATATACTATTAT-ATA
9365968 TTTT-TATACTATTATATA
1 TTTTATATACTATTATATA
9365986 TTTT
1 TTTT
9365990 TTATCCATAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 6 0.18
19 9 0.26
20 10 0.29
21 9 0.26
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTATATACTATTATATA
Found at i:9365990 original size:19 final size:19
Alignment explanation
Indices: 9365924--9365993 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
9365914 TACTATACAT
9365924 TATTTTTATATACATATTATA
1 TATTTTT-TATAC-TATTATA
* * * *
9365945 TATTATTCTAGATTATTATG
1 TATT-TTTTATACTATTATA
9365965 T-TATTTTTATACTATTATA
1 TAT-TTTTTATACTATTATA
9365984 TATTTTTTAT
1 TATTTTTTAT
9365994 CCATATATTA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
19 20 0.53
20 9 0.24
21 7 0.18
22 2 0.05
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.61
Consensus pattern (19 bp):
TATTTTTTATACTATTATA
Found at i:9366509 original size:34 final size:34
Alignment explanation
Indices: 9366454--9366531 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
9366444 TGTACATTGA
* * * *
9366454 TATTGTATTACTTTTTTTTTTGTATGTCATGCAC
1 TATTTTATTACTTCTTCTTTTGTATATCATGCAC
*
9366488 TATTTTATTACTTCTTCTTTTGTATATCATGCAT
1 TATTTTATTACTTCTTCTTTTGTATATCATGCAC
*
9366522 TATTTAATTA
1 TATTTTATTA
9366532 TTGCAATGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.59
Consensus pattern (34 bp):
TATTTTATTACTTCTTCTTTTGTATATCATGCAC
Found at i:9368079 original size:19 final size:19
Alignment explanation
Indices: 9368055--9368092 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9368045 ATGAAAATAA
9368055 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
9368074 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
9368093 TCTTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AACAAAATTCAGGGATTTT
Found at i:9372246 original size:54 final size:54
Alignment explanation
Indices: 9372152--9372263 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
9372142 AGCATGGTTG
* * *
9372152 CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCA
* * * *
9372206 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAAATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCA
9372260 CCAG
1 CCAG
9372264 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCA
Found at i:9372263 original size:27 final size:27
Alignment explanation
Indices: 9372152--9372263 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
9372142 AGCATGGTTG
* * *
9372152 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAAATAATTGTGGCAGAGCCA
* * *
9372178 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAAATAATTGTGGCAGAGCCA
*
9372206 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAAATAAT-TGTGGCAGAGCCA
* *
9372233 CCAGATCAAATAATTGTGGCATAGCCA
1 CCAGAACAAATAATTGTGGCAGAGCCA
9372260 CCAG
1 CCAG
9372264 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGAACAAATAATTGTGGCAGAGCCA
Found at i:9372696 original size:8 final size:8
Alignment explanation
Indices: 9372680--9372714 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
9372670 AAAATACCAA
*
9372680 CTTTCCGG
1 CTTTTCGG
*
9372688 CATTTCGG
1 CTTTTCGG
9372696 CTTTTCGG
1 CTTTTCGG
9372704 CTTTTCGG
1 CTTTTCGG
9372712 CTT
1 CTT
9372715 CTGCCGATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.03, C:0.29, G:0.23, T:0.46
Consensus pattern (8 bp):
CTTTTCGG
Found at i:9378194 original size:20 final size:20
Alignment explanation
Indices: 9378166--9378207 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
9378156 AAATAAACAC
* *
9378166 ATAATTATTCATCTAATATT
1 ATAACTATTCAACTAATATT
9378186 ATAACTATTCAACTAATATT
1 ATAACTATTCAACTAATATT
9378206 AT
1 AT
9378208 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAACTATTCAACTAATATT
Found at i:9387199 original size:23 final size:23
Alignment explanation
Indices: 9387173--9387261 Score: 115
Period size: 23 Copynumber: 3.9 Consensus size: 23
9387163 CTGAGTGCCG
**
9387173 TTCTGGTGCATTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
9387196 TTCTGGTGTGTTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
*
9387219 TTCTGGTGTGTTTGGTTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
* * * *
9387242 TTTTGATTTGTTTGGTTGGA
1 TTCTGGTGTGTTTGGGTGGA
9387262 ATCCGTGTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.10, C:0.04, G:0.35, T:0.51
Consensus pattern (23 bp):
TTCTGGTGTGTTTGGGTGGATTA
Found at i:9394254 original size:13 final size:13
Alignment explanation
Indices: 9394236--9394262 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9394226 GGGGTTGTTT
9394236 ATTAAACTAATTA
1 ATTAAACTAATTA
9394249 ATTAAACTAATTA
1 ATTAAACTAATTA
9394262 A
1 A
9394263 CTAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:9394259 original size:9 final size:9
Alignment explanation
Indices: 9394247--9394280 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
9394237 TTAAACTAAT
9394247 TAATTAAAC
1 TAATTAAAC
9394256 TAATT-AAC
1 TAATTAAAC
9394264 TAATTAAAC
1 TAATTAAAC
*
9394273 TAAGTAAA
1 TAATTAAA
9394281 GAGAAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:9397195 original size:6 final size:6
Alignment explanation
Indices: 9397186--9397230 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
9397176 AATAAAATTT
* * *
9397186 AAATGA AAATAA AAATAA AAAGAA GAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
9397231 GATAAGAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:9402606 original size:13 final size:13
Alignment explanation
Indices: 9402588--9402614 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9402578 GGGATTGTTT
9402588 ATTAAACTAATTA
1 ATTAAACTAATTA
9402601 ATTAAACTAATTA
1 ATTAAACTAATTA
9402614 A
1 A
9402615 ATAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:9402611 original size:9 final size:9
Alignment explanation
Indices: 9402599--9402632 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
9402589 TTAAACTAAT
9402599 TAATTAAAC
1 TAATTAAAC
9402608 TAATTAAA-
1 TAATTAAAC
9402616 TAATTAAAC
1 TAATTAAAC
*
9402625 TAAGTAAA
1 TAATTAAA
9402633 GAGAAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:9402621 original size:17 final size:17
Alignment explanation
Indices: 9402599--9402632 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9402589 TTAAACTAAT
*
9402599 TAATTAAACTAATTAAA
1 TAATTAAACTAAGTAAA
9402616 TAATTAAACTAAGTAAA
1 TAATTAAACTAAGTAAA
9402633 GAGAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAACTAAGTAAA
Found at i:9407239 original size:20 final size:21
Alignment explanation
Indices: 9407214--9407259 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
9407204 ATTAGTTCAT
9407214 ATCTAACT-AAGGAACAAAAC
1 ATCTAACTGAAGGAACAAAAC
* *
9407234 ATCTAATTGAAGTAACAAAAC
1 ATCTAACTGAAGGAACAAAAC
*
9407255 GTCTA
1 ATCTA
9407260 CATGATCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (21 bp):
ATCTAACTGAAGGAACAAAAC
Found at i:9414380 original size:46 final size:47
Alignment explanation
Indices: 9414321--9414537 Score: 300
Period size: 46 Copynumber: 4.7 Consensus size: 47
9414311 GCCATAGTGC
* * *
9414321 CTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACTCATTTTCATATCAGGTTGCCATGGTAT
* * * *
9414367 CTTTTAACCATGGTCTTATTC-TTTTCATGTCACGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACTCATTTTCATATCAGGTTGCCATGGTAT
* *
9414413 CTTTCAACCATTGTCTTATTCA-TTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACTCATTTTCATATCAGGTTGCCATGGTAT
*
9414459 CTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACTCATTTTCATATCAGGTTGCCATGGTAT
*
9414505 CTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 CTTTCAACCATGGTCTTACTCATTTTCATATCAG
9414538 AGAGCACACT
Statistics
Matches: 158, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
45 5 0.03
46 153 0.97
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (47 bp):
CTTTCAACCATGGTCTTACTCATTTTCATATCAGGTTGCCATGGTAT
Found at i:9416639 original size:14 final size:11
Alignment explanation
Indices: 9416603--9416634 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
9416593 CTTTATATAC
9416603 TAATAAAATAT
1 TAATAAAATAT
9416614 TAATAAAATAT
1 TAATAAAATAT
9416625 TAATAAAATA
1 TAATAAAATA
9416635 ATATTTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAT
Done.