Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 331 of 349
Found at i:109768019 original size:43 final size:46
Alignment explanation
Indices: 109767714--109768096 Score: 277
Period size: 51 Copynumber: 7.7 Consensus size: 46
109767704 TGTAAGTTAA
* * *
109767714 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TATATGTATT
* *
109767765 GTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCA--TGTAA--TA-TATGTATT
* * * * *
109767816 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGCAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TATATGTATT
* *
109767867 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TA-TATGTATT
* * *
109767919 GTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TA-TATGTATT
* *
109767971 GTGTAAGTTGTAAGTTAAATGTATTATGTCA-GTCA-A-ATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCATGTAATATATGTATT
*
109768014 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCA--TGTAA--TA-TATGTATT
109768065 ATGTAAGTAATGTAAGTTAAATGTATTATGTC
1 ATGTAAGT--TGTAAGTTAAATGTATTATGTC
109768097 GACAAGATTT
Statistics
Matches: 300, Mismatches: 19, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
43 36 0.12
45 1 0.00
46 3 0.01
48 3 0.01
49 1 0.00
50 24 0.08
51 114 0.38
52 97 0.32
53 21 0.07
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.46
Consensus pattern (46 bp):
ATGTAAGTTGTAAGTTAAATGTATTATGTCATGTAATATATGTATT
Found at i:109768047 original size:18 final size:18
Alignment explanation
Indices: 109767979--109768022 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
109767969 TTGTGTAAGT
109767979 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
* *
109767997 TGTCAGTCAAATGTATTA
1 TGTAAGTTAAATGTATTA
109768015 TGTAAGTT
1 TGTAAGTT
109768023 GTAAGTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:109770376 original size:7 final size:7
Alignment explanation
Indices: 109770323--109770398 Score: 64
Period size: 7 Copynumber: 10.9 Consensus size: 7
109770313 ACCTTAATCA
*
109770323 CTAAACT
1 CTAAACC
109770330 CTCAAACC
1 CT-AAACC
109770338 CTAAACC
1 CTAAACC
** *
109770345 AAAAACA
1 CTAAACC
109770352 CTAAA-C
1 CTAAACC
* *
109770358 CTACATC
1 CTAAACC
*
109770365 GTAAACC
1 CTAAACC
109770372 CTAAACC
1 CTAAACC
*
109770379 CTAAACT
1 CTAAACC
109770386 CTAAACC
1 CTAAACC
109770393 CTAAAC
1 CTAAAC
109770399 TAGAATTCAA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
6 4 0.08
7 43 0.81
8 6 0.11
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:109770461 original size:17 final size:17
Alignment explanation
Indices: 109770439--109770488 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
109770429 TATCCTATTT
109770439 CCTACATTATATAATAA
1 CCTACATTATATAATAA
109770456 CCTACATTATATAATAA
1 CCTACATTATATAATAA
*
109770473 ACTACA-TATATAATAA
1 CCTACATTATATAATAA
109770489 TCTAGCGGCG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 10 0.31
17 22 0.69
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (17 bp):
CCTACATTATATAATAA
Found at i:109770691 original size:113 final size:111
Alignment explanation
Indices: 109770510--109770860 Score: 411
Period size: 113 Copynumber: 3.1 Consensus size: 111
109770500 TTCCCACAAC
* * * *
109770510 GCGCCGCTAATAATATGTTTTACCGGCGTTTTACCATAAGCGCCAC-AACTGGTAGTATACATCA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTA-AATAAGCGCCACTAA-T-GTAGTATACATCA
109770574 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
63 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
* * *
109770623 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTT-AAATAAGCGCCACTAAT-GTAGTATACATCAA
* * * * *
109770688 GACCAAA-CTCTGCGTTTTGGTTAA-GAAATATTGCGGCGCTTTTCACTAC
64 GACCAAAGCGCTGCGTTTTGGTTAATG---TTTTGCGGCGCTTTACAATAA
* * * *
109770737 TCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATAAGCGCCACTACTGCTAGTATACATCAA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTAA-ATAAGCGCCACTAATG-TAGTATACATCAA
* * *
109770802 GACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGTTTTCCAATAA
64 GACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
*
109770850 GCGCCACTAAT
1 GCGCCGCTAAT
109770861 CCTAATATAC
Statistics
Matches: 200, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
111 1 0.00
112 16 0.08
113 87 0.44
114 80 0.40
115 16 0.08
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (111 bp):
GCGCCGCTAATACTATGCTTTAGCGGCGTTTTAAATAAGCGCCACTAATGTAGTATACATCAAGA
CCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
Found at i:109770962 original size:188 final size:188
Alignment explanation
Indices: 109770645--109771042 Score: 688
Period size: 188 Copynumber: 2.1 Consensus size: 188
109770635 CTATGCTTTA
* * * *
109770645 GCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
109770710 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
66 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
109770775 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
131 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
109770833 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
* * *
109770898 AAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTAGTAGCGTTTTAATATA
66 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
* *
109770963 AGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
131 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
* * *
109771021 GCGACGCTTTACAATAAGCGCC
1 GCGGCGTTTTCCAATAAGCGCC
109771043 GCTACTACTA
Statistics
Matches: 198, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
188 198 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (188 bp):
GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
Found at i:109771083 original size:113 final size:114
Alignment explanation
Indices: 109770833--109771258 Score: 464
Period size: 114 Copynumber: 3.7 Consensus size: 114
109770823 TTAATATTTT
* ** *
109770833 GCGGCGTTTTCCA-ATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCGTTTT-AATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
* * * *
109770897 TAAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
** * * ** *
109770947 GTAGCGTTTTAATATAAGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGT
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
* * * * ** * * *
109771012 T-A-ATATTTTGCGACGCTTTACAATAAGCGCCGCTACTACTATGCGTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* * *
109771060 GCGGCGTTTTTAA-ATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCG-TTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
*
109771124 TAAGAAATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* ** * *
109771174 GCGGCGTTTGAATATAAGCGCCACTAAGGCTACTATACATCAAGACCAAAGCGCTGCGTTTTGGA
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
** *
109771239 TAAGAGCTTTTGCGGCGCTT
65 TAAGAAATATTGCGGCGCTT
109771259 GGTAGTAAAC
Statistics
Matches: 252, Mismatches: 53, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
112 14 0.06
113 76 0.30
114 119 0.47
115 43 0.17
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (114 bp):
GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGTT
AAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
Found at i:109782052 original size:21 final size:21
Alignment explanation
Indices: 109782023--109782067 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
109782013 TAAATTGCAA
*
109782023 TTATTTAAAGGGCCAAAACGG
1 TTATCTAAAGGGCCAAAACGG
*
109782044 TTATCTAAAGGGCCAAAATGG
1 TTATCTAAAGGGCCAAAACGG
109782065 TTA
1 TTA
109782068 ATAAACCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (21 bp):
TTATCTAAAGGGCCAAAACGG
Found at i:109783423 original size:14 final size:13
Alignment explanation
Indices: 109783404--109783440 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
109783394 TTTTAATTTC
109783404 AATTATATTAGGAT
1 AATTAT-TTAGGAT
*
109783418 AATTATTAAGGAT
1 AATTATTTAGGAT
109783431 AATTATTTAG
1 AATTATTTAG
109783441 ATTTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (13 bp):
AATTATTTAGGAT
Found at i:109786424 original size:24 final size:24
Alignment explanation
Indices: 109786397--109786459 Score: 108
Period size: 24 Copynumber: 2.6 Consensus size: 24
109786387 ATTTCAATTT
109786397 ATCAACCTAAAGTCAATTGTATTA
1 ATCAACCTAAAGTCAATTGTATTA
* *
109786421 ATCAACTTAAAGTCATTTGTATTA
1 ATCAACCTAAAGTCAATTGTATTA
109786445 ATCAACCTAAAGTCA
1 ATCAACCTAAAGTCA
109786460 GCTGTTCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.33
Consensus pattern (24 bp):
ATCAACCTAAAGTCAATTGTATTA
Found at i:109789058 original size:23 final size:23
Alignment explanation
Indices: 109789032--109789129 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
109789022 ATAAGTGCCA
109789032 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
109789055 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
109789078 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
109789100 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
109789123 CACTGAT
1 CACTGAT
109789130 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:109789097 original size:45 final size:45
Alignment explanation
Indices: 109789039--109789127 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
109789029 CCACACTGAT
* *
109789039 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
109789084 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
109789128 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:109796413 original size:23 final size:23
Alignment explanation
Indices: 109796387--109796483 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
109796377 ATAAGTGCCA
109796387 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
109796410 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
109796433 CACTG-GATGTAGCC-AAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
109796454 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
109796477 CACTGAT
1 CACTGAT
109796484 CAATAACACT
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
21 12 0.17
22 16 0.23
23 41 0.59
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:109796454 original size:44 final size:45
Alignment explanation
Indices: 109796394--109796481 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 45
109796384 CCACACTGAT
*
109796394 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCGAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
109796439 ATGTAGCC-AAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCGAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
109796482 ATCAATAACA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 34 0.81
45 8 0.19
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (45 bp):
ATGTAGCCGAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:109800394 original size:27 final size:27
Alignment explanation
Indices: 109800358--109800496 Score: 142
Period size: 27 Copynumber: 5.1 Consensus size: 27
109800348 GCATGGCTGT
* *
109800358 CAGA-ACAGATAATTTGACAGAGTCAC
1 CAGATACAGATAATTTGGCAGAGCCAC
* *
109800384 CAGATACAGATAATCGTGGCAGGGCCAC
1 CAGATACAGATAAT-TTGGCAGAGCCAC
*
109800412 CAGA-ACAGATATATGTGGCAGAGCCAC
1 CAGATACAGATA-ATTTGGCAGAGCCAC
*
109800439 CAGAT-CAGATATTTGTGGCAGAGCCAC
1 CAGATACAGATAATT-TGGCAGAGCCAC
* *
109800466 CAGAT-CAGATATTTGTGGCATAGCCAC
1 CAGATACAGATAATT-TGGCAGAGCCAC
109800493 CAGA
1 CAGA
109800497 ACGCTTCCTC
Statistics
Matches: 100, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
26 5 0.05
27 80 0.80
28 15 0.15
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATACAGATAATTTGGCAGAGCCAC
Found at i:109800417 original size:54 final size:53
Alignment explanation
Indices: 109800358--109800496 Score: 161
Period size: 54 Copynumber: 2.6 Consensus size: 53
109800348 GCATGGCTGT
* *
109800358 CAGAACAGATAATTTGACAGAGTCACCAGATACAGATAATCGTGGCAGGGCCAC
1 CAGAACAGATAATTTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCAC
* * * *
109800412 CAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCAC
1 CAGAACAGATA-ATTTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCAC
* * * *
109800466 CAGATCAGATATTTGTGGCATAGCCACCAGA
1 CAGAACAGATAATT-TGACAGAGCCACCAGA
109800497 ACGCTTCCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 55 0.75
55 17 0.23
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (53 bp):
CAGAACAGATAATTTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCAC
Found at i:109802143 original size:26 final size:26
Alignment explanation
Indices: 109802107--109802216 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
109802097 CATGAAATTC
109802107 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
109802133 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
109802159 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
109802185 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
109802211 TTATCA
1 TTATCA
109802217 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:109810431 original size:17 final size:17
Alignment explanation
Indices: 109810409--109810441 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
109810399 GCAAGGGAGA
*
109810409 AAAAGAAAGGAAGAAAG
1 AAAAGAAAAGAAGAAAG
109810426 AAAAGAAAAGAAGAAA
1 AAAAGAAAAGAAGAAA
109810442 AGAGAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAGAAGAAAG
Found at i:109810723 original size:30 final size:30
Alignment explanation
Indices: 109810689--109810748 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
109810679 GTAATTAAGG
109810689 TAAGCACTTTTGTGTTTTATGATTATTGAA
1 TAAGCACTTTTGTGTTTTATGATTATTGAA
*
109810719 TAAGCATTTTTGTGTTTTATGATTATTGAA
1 TAAGCACTTTTGTGTTTTATGATTATTGAA
109810749 ATAAATCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.17, T:0.52
Consensus pattern (30 bp):
TAAGCACTTTTGTGTTTTATGATTATTGAA
Found at i:109833053 original size:205 final size:204
Alignment explanation
Indices: 109832371--109833131 Score: 1148
Period size: 205 Copynumber: 3.8 Consensus size: 204
109832361 TAGGCCGCAG
* * * *
109832371 CATAACAGATCTGGCCTTCAGATG-TTAT-ACTAAAACAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTCGCCTTCAGATGATT-TCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGT
* * *
109832434 GTTTACAAGGAGCAAATCAAAGACATAGCTGATTTGGCTTTTACGTGATTACGATGAAGCAAATC
65 GTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATC
*
109832499 TAAGATGATTTGCCGTCTCTGTATTGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATG
130 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAA-GAATCGAAGTTTGGCATCTTCACTTTGATG
*
109832564 GAGAGCAGACG
194 GAGAGCAGACA
109832575 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
*
109832640 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
66 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
*
109832705 AAGATGATTTGTCGTCTCTG-ATTGTCAGAG-A-AATTGAAGTTTGGCATCTTCACTTTGATGGA
131 AAGATGATTTGTCGTCTCTGTATTGTCAGAGAAGAATCGAAGTTTGGCATCTTCACTTTGATGGA
109832767 GAGCAGACA
196 GAGCAGACA
109832776 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
*
109832841 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGA-GAAAGCAAATC
66 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-AAGCAAATC
* *
109832905 TAAGATGATTTGTCGTCTCTGTATCGTCAGTGAACGAATCGAAGTTTGGCATCTTCACTTTGATG
130 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAA-GAATCGAAGTTTGGCATCTTCACTTTGATG
109832970 GAGAGCAGACA
194 GAGAGCAGACA
* * * * *
109832981 CATAGCAGATCTCACATTCGGATG-TTT-ATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTA
1 CATAGCAGATCTCGCCTTCAGATGATTTCA--CTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
* * * * * *
109833044 TGCTTACAAGG-AC-AATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAAT
64 TGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAAT
* *
109833106 CTAAGATGATTTGGCATCTCTGTATT
129 CTAAGATGATTTGTCGTCTCTGTATT
109833132 TCCAGGGAAC
Statistics
Matches: 518, Mismatches: 29, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
200 1 0.00
201 184 0.36
202 66 0.13
203 10 0.02
204 38 0.07
205 219 0.42
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (204 bp):
CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
AAGATGATTTGTCGTCTCTGTATTGTCAGAGAAGAATCGAAGTTTGGCATCTTCACTTTGATGGA
GAGCAGACA
Found at i:109833341 original size:87 final size:87
Alignment explanation
Indices: 109833185--109833653 Score: 341
Period size: 87 Copynumber: 5.4 Consensus size: 87
109833175 AGACGGGGGG
* * * * * *
109833185 CAGATCAAAGATAGCAGATATCG-CCTTCCTGAG-TTACAGTGAAGTAGATCAAAGATTTCAGCA
1 CAGATCGAAGATAGCAGATCT-GACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTC-GCA
*
109833248 TGGCATCCATGTGCTTATAGGGAA
64 TGGCATCCCTGTGCTTATAGGGAA
* * *
109833272 CAGATCGAAGATAGCAGATCTGACATTCCTGTACTTAGAGTGAAGCAGATCGAAGATTTCGCATA
1 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCGCATG
*
109833337 GCATCCCCGTGCTTATAGGGAA
66 GCATCCCTGTGCTTATAGGGAA
* * * * * * * * **
109833359 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-A
1 CAGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTC-GCA
* * * **
109833421 CTGACATTCCTGTGCTTACAGTAAA
64 -TGGCATCCCTGTGCTTATAGGGAA
** * * * * * * ** *
109833446 GCAGATCGAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA-CA-AGTTGAAAAACAGTA
1 -CAGATCGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGCAGA-TCG-AAGA-TTTC
109833507 G-ATTTGGCATCCCTGTGCTTATAGGGAA
61 GCA--TGGCATCCCTGTGCTTATAGGGAA
*
109833535 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCCTACAGTGAAGCAGATCGAAGATTTCAGCAT
1 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTC-GCAT
* *
109833600 GGCATCCCTATGTTTATAGGGAA
65 GGCATCCCTGTGCTTATAGGGAA
* * * *
109833623 CA-ATTG-AGATAGCAGATTTGGCATCCCTGTG
1 CAGATCGAAGATAGCAGATCTGACATTCCTGTG
109833654 TTTATAGGAA
Statistics
Matches: 299, Mismatches: 65, Indels: 37
0.75 0.16 0.09
Matches are distributed among these distances:
86 39 0.13
87 132 0.44
88 78 0.26
89 43 0.14
90 6 0.02
91 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (87 bp):
CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCGCATG
GCATCCCTGTGCTTATAGGGAA
Found at i:109833400 original size:44 final size:45
Alignment explanation
Indices: 109833337--109833725 Score: 294
Period size: 44 Copynumber: 8.9 Consensus size: 45
109833327 ATTTCGCATA
* * * *
109833337 GCATCCCCGTGCTTATAGGGAACAAG-TTGAAAACAGCAGATTTG
1 GCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATTTG
*
109833381 GCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGA-CTG
1 GCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATTTG
* * * ** **
109833424 ACATTCCTGTGCTTACAGTAAAGC-AGATCGAAGATTTCAGCA--TG
1 GCATCCCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAG-ATTTG
* * * *
109833468 GCATCCCTGTGCTTATAGGGAACAAG-TTGAAAAACAGTAGATTTG
1 GCATCCCTGTGCTTATAGGGAACAAGATCG-AAGATAGCAGATTTG
*
109833513 GCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGATCTG
1 GCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATTTG
* * * * * **
109833557 ACATTCCTGTGCCTACAGTGAAGC-AGATCGAAGATTTCAGCA--TG
1 GCATCCCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAG-ATTTG
* * *
109833601 GCATCCCTATGTTTATAGGGAAC-A-ATTG-AGATAGCAGATTTG
1 GCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATTTG
* * * * *
109833643 GCATCCCTGTGTTTATA-GGAACAAG-TTGAAAACAACAGATTTG
1 GCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATTTG
*
109833686 GCATCCCTGTGTTTATAGGGAAC-AGATC-AA-ATAAGCAGAT
1 GCATCCCTGTGCTTATAGGGAACAAGATCGAAGAT-AGCAGAT
109833726 CGAAGAACTC
Statistics
Matches: 275, Mismatches: 52, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
40 1 0.00
41 12 0.04
42 26 0.09
43 65 0.24
44 127 0.46
45 43 0.16
46 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (45 bp):
GCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATTTG
Found at i:109834211 original size:22 final size:22
Alignment explanation
Indices: 109834179--109834234 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
109834169 TAAGTGGGGG
*
109834179 ATCGATGGTATTTTGAGGAAGA
1 ATCGATTGTATTTTGAGGAAGA
*
109834201 ATCGATTGTATTTTGGGGAAGA
1 ATCGATTGTATTTTGAGGAAGA
**
109834223 AGAGATTGTATT
1 ATCGATTGTATT
109834235 AGAGGGGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.36
Consensus pattern (22 bp):
ATCGATTGTATTTTGAGGAAGA
Found at i:109834974 original size:38 final size:38
Alignment explanation
Indices: 109834828--109834962 Score: 222
Period size: 38 Copynumber: 3.6 Consensus size: 38
109834818 ATAAAGTATG
*
109834828 GTTTTAATTAATAATAAAAACAAAATAGTA-GGGGAATG
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGAATA
109834866 GTTTTAATTAATAAT-AAACAAAATAGTATGGGGAATA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGAATA
*
109834903 GTTTTAATTAATAATAAAACAAAATAGTATGGGGAGTA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGAATA
109834941 GTTTTAATTAA-AATAAAACAAA
1 GTTTTAATTAATAATAAAACAAA
109834963 GTAGCATTGG
Statistics
Matches: 93, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
36 13 0.14
37 33 0.35
38 47 0.51
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.31
Consensus pattern (38 bp):
GTTTTAATTAATAATAAAACAAAATAGTATGGGGAATA
Found at i:109855662 original size:22 final size:23
Alignment explanation
Indices: 109855630--109855686 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
109855620 TAAGTGGGGG
*
109855630 ATCGATGGTATTTTGAGGA-AGA
1 ATCGATTGTATTTTGAGGAGAGA
*
109855652 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATTGTATTTTGAGGAGAGA
**
109855675 AGAGATTGTATT
1 ATCGATTGTATT
109855687 AGAGGGGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.30, C:0.04, G:0.32, T:0.35
Consensus pattern (23 bp):
ATCGATTGTATTTTGAGGAGAGA
Found at i:109855681 original size:23 final size:22
Alignment explanation
Indices: 109855637--109855686 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
109855627 GGGATCGATG
**
109855637 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
*
109855659 GTATTTTGGGGAGAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
109855682 GTATT
1 GTATT
109855687 AGAGGGGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:109860253 original size:205 final size:203
Alignment explanation
Indices: 109859868--109860632 Score: 1212
Period size: 205 Copynumber: 3.7 Consensus size: 203
109859858 TAGGCCGCAG
* * * *
109859868 CATAACAGATCTGGCCTTCAGATGTATACT-AAACAGATCCAAGATGGTTTGGCATCCTTGTGTT
1 CATAGCAGATCTCGCCTTCAGATGTTTACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTT
*
109859932 TACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTTACGTGATTACGATGAAGCAAATCTAA
66 TACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAA
*
109859997 GATGATTTGCCGTCTCTGTATTGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAG
131 GATGATTTGTCGTCTCTGTATTGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAG
*
109860062 AGCAGACG
196 AGCAGACA
109860070 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
109860135 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
*
109860200 AAGATGATTTGTCGTCTCTGTATTGTCAGAGAATGAATTGAAGTTTGGCATCTTCACTTTGATGG
129 AAGATGATTTGTCGTCTCTGTATTGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGG
109860265 AGAGCAGACA
194 AGAGCAGACA
109860275 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
* *
109860340 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGA-GAAAGCAAATC
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-AAGCAAATC
* * *
109860404 TAAGATGATTTGTCGTCTCTGTATCGTCAGTGAACGAATCGAAGTTTGGCATCTTCACTTTGATG
128 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATG
109860469 GAGAGCAGACA
193 GAGAGCAGACA
* * * * *
109860480 CATAGCAGATCTCACATTCGGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTATG
1 CATAGCAGATCTCGCCTTCAGATGTTTA--CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
* * * * * *
109860545 CTTACAAGGAGCAAATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCT
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
* *
109860609 AAGATGATTTGGCATCTCTGTATT
129 AAGATGATTTGTCGTCTCTGTATT
109860633 TCCAGGGAAC
Statistics
Matches: 526, Mismatches: 30, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
202 22 0.04
203 3 0.01
204 65 0.12
205 436 0.83
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (203 bp):
CATAGCAGATCTCGCCTTCAGATGTTTACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTT
TACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAA
GATGATTTGTCGTCTCTGTATTGTCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAG
AGCAGACA
Found at i:109860824 original size:45 final size:44
Alignment explanation
Indices: 109860752--109861231 Score: 329
Period size: 44 Copynumber: 10.9 Consensus size: 44
109860742 TTCAGCATGG
*
109860752 CATCCATGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGA
1 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGA
* * * * ** *
109860796 CATTCCTGTACTTAGAGTGAAGCAGATCGAAGATTTC-GCAT-AG-
1 CATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGA
* * * * * *
109860839 CATCCCCGTGCTTATAGGGAACA-AGTTGAAAACAGCAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
109860883 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGA
1 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGA
* * ** ** *
109860927 CATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAG--CATGG
1 CATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGA
* * * * * *
109860971 CATCCCTGTGCTTATAGGGAACA-AGTTGAAAAACAGTAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAGA-TCG-AAGATAGCAGATCTGA
109861016 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGA
1 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGA
* * * * ** *
109861060 CATTCCTGTGCCTACAGTGAAGCAGATCGAAGATTTCAG--CATGG
1 CATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGA
* * * * * *
109861104 CATCCCTATGTTTATAGGGAACA-AGTTGAGGATAGCAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
* * * * * * *
109861148 CATCCCTGTGTTTATAGGGAACA-AGTTGAAAACAACAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
*
109861192 CATCCCTGTGTTTATAGGGAACAGATC-AA-ATAAGCAGATC
1 CATCCCTGTGCTTATAGGGAACAGATCGAAGAT-AGCAGATC
109861232 GAAGAACTCA
Statistics
Matches: 339, Mismatches: 76, Indels: 43
0.74 0.17 0.09
Matches are distributed among these distances:
41 1 0.00
42 13 0.04
43 43 0.13
44 206 0.61
45 75 0.22
46 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (44 bp):
CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGA
Found at i:109861065 original size:133 final size:132
Alignment explanation
Indices: 109860749--109861170 Score: 702
Period size: 133 Copynumber: 3.2 Consensus size: 132
109860739 GATTTCAGCA
* * *
109860749 TGGCATCCATGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTACTTAGAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
* *
109860814 GAAGCAGATCGAAGATTTC-GCATAGCATCCCCGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
109860878 TT
131 TT
109860880 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
* *
109860945 AAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAACAGTAG
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG-AAAACAGCAG
109861010 ATT
130 ATT
*
109861013 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCCTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
* * ** *
109861078 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAGGATAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
109861143 TT
131 TT
*
109861145 TGGCATCCCTGTGTTTATAGGGAACA
1 TGGCATCCCTGTGCTTATAGGGAACA
109861171 AGTTGAAAAC
Statistics
Matches: 273, Mismatches: 16, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
131 80 0.29
132 66 0.24
133 127 0.47
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
TT
Found at i:109861722 original size:22 final size:23
Alignment explanation
Indices: 109861690--109861746 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
109861680 AAGTGGGGGG
*
109861690 ATCGATGGTATTTTGAGGA-AGA
1 ATCGATTGTATTTTGAGGATAGA
*
109861712 ATCGATTGTATTTTGGGGATAGA
1 ATCGATTGTATTTTGAGGATAGA
**
109861735 AGAGATTGTATT
1 ATCGATTGTATT
109861747 AGAGGGGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.37
Consensus pattern (23 bp):
ATCGATTGTATTTTGAGGATAGA
Found at i:109861741 original size:23 final size:22
Alignment explanation
Indices: 109861697--109861746 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
109861687 GGGATCGATG
**
109861697 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
*
109861719 GTATTTTGGGGATAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
109861742 GTATT
1 GTATT
109861747 AGAGGGGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.30, C:0.02, G:0.30, T:0.38
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:109862396 original size:78 final size:77
Alignment explanation
Indices: 109862326--109862491 Score: 210
Period size: 77 Copynumber: 2.1 Consensus size: 77
109862316 TTTTTTTATG
* *
109862326 ATAAAAA-AAAAGAGAAAATAAAGTATGGTTTTAATTAATAATAAAAACAAAATAGTATGGGGAA
1 ATAAAAACAAAAGAG--AATAAAGAATAGTTTTAATTAATAAT-AAAACAAAATAGTATGGGGAA
109862390 TGGTTTTAATTAATA
63 TGGTTTTAATTAATA
* * *** * *
109862405 ATAAAAACAAAATAGTATGGGGAATAGTTTTAATTAATAATAAAACAAAATAGTATGGGGAGTAG
1 ATAAAAACAAAAGAGAATAAAGAATAGTTTTAATTAATAATAAAACAAAATAGTATGGGGAATGG
109862470 TTTTAATTAATA
66 TTTTAATTAATA
109862482 AT-AAAACAAA
1 ATAAAAACAAA
109862492 GTAGCATTGG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
76 8 0.10
77 36 0.47
78 20 0.26
79 7 0.09
80 6 0.08
ACGTcount: A:0.54, C:0.02, G:0.15, T:0.29
Consensus pattern (77 bp):
ATAAAAACAAAAGAGAATAAAGAATAGTTTTAATTAATAATAAAACAAAATAGTATGGGGAATGG
TTTTAATTAATA
Found at i:109862459 original size:38 final size:39
Alignment explanation
Indices: 109862353--109862491 Score: 246
Period size: 39 Copynumber: 3.6 Consensus size: 39
109862343 ATAAAGTATG
*
109862353 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
109862392 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
*
109862431 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
109862469 GTTTTAATTAATAAT-AAAACAAA
1 GTTTTAATTAATAATAAAAACAAA
109862492 GTAGCATTGG
Statistics
Matches: 98, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
38 45 0.46
39 53 0.54
ACGTcount: A:0.50, C:0.03, G:0.15, T:0.32
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
Found at i:109862503 original size:77 final size:78
Alignment explanation
Indices: 109862353--109862503 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 78
109862343 ATAAAGTATG
*
109862353 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATGGTTTTAATTAATAATAAAAACAAAAT
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATAGTTTTAATTAATAATAAAAACAAAAT
*
109862418 AGTATGGGGAATA
66 AGCATGGGGAATA
* *
109862431 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGAGTAGTTTTAATTAATAAT-AAAACAAAGT
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATAGTTTTAATTAATAATAAAAACAAAAT
109862494 AGCATTGGGG
66 AGCA-TGGGG
109862504 GAGTGGAATC
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
76 12 0.18
77 41 0.60
78 15 0.22
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.31
Consensus pattern (78 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATAGTTTTAATTAATAATAAAAACAAAAT
AGCATGGGGAATA
Found at i:109870917 original size:28 final size:29
Alignment explanation
Indices: 109870858--109870915 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 29
109870848 TAATATGATC
*
109870858 AATTAAAATACAATAATCTTAAAAAATATA
1 AATTAAAATA-AATAATCTCAAAAAATATA
109870888 AATTAAAAT-AATAATCTCATAAATAATA
1 AATTAAAATAAATAATCTCA-AAA-AATA
109870916 AAAAATACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 9 0.36
29 3 0.12
30 13 0.52
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (29 bp):
AATTAAAATAAATAATCTCAAAAAATATA
Found at i:109878484 original size:25 final size:28
Alignment explanation
Indices: 109878452--109878506 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
109878442 AAGTTCATAT
109878452 ATTAATAT-TTTT-AT-ATTTATTTATA
1 ATTAATATGTTTTAATAATTTATTTATA
109878477 ATTAATATGTTTTAATAAATTTATTTATA
1 ATTAATATGTTTTAAT-AATTTATTTATA
109878506 A
1 A
109878507 GTCCATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 8 0.31
26 4 0.15
27 2 0.08
29 12 0.46
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (28 bp):
ATTAATATGTTTTAATAATTTATTTATA
Found at i:109883493 original size:16 final size:16
Alignment explanation
Indices: 109883471--109883508 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
109883461 TCGGCAAATC
*
109883471 CCGAAATGTCGAAAAG
1 CCGAAATGCCGAAAAG
*
109883487 TCGAAATGCCGAAAAG
1 CCGAAATGCCGAAAAG
109883503 CCGAAA
1 CCGAAA
109883509 GTCTGGCTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.11
Consensus pattern (16 bp):
CCGAAATGCCGAAAAG
Found at i:109883767 original size:29 final size:29
Alignment explanation
Indices: 109883735--109883809 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
109883725 AATTGATTCA
* *
109883735 GGCCGGATGGGCCATATGAATGTGATTTG
1 GGCCGAATGGGCCATATGAATGAGATTTG
*
109883764 GGCCTAATGGGCCATATGAATGAGA-TTG
1 GGCCGAATGGGCCATATGAATGAGATTTG
* * *
109883792 AGCCTAGTGGGCCATATG
1 GGCCGAATGGGCCATATG
109883810 CATGTAAGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 19 0.46
29 22 0.54
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (29 bp):
GGCCGAATGGGCCATATGAATGAGATTTG
Found at i:109883805 original size:28 final size:29
Alignment explanation
Indices: 109883741--109883809 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
109883731 TTCAGGCCGG
* *
109883741 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGAGCCTA
109883770 ATGGGCCATATGAATGAGA-TTGAGCCTA
1 ATGGGCCATATGAATGAGATTTGAGCCTA
*
109883798 GTGGGCCATATG
1 ATGGGCCATATG
109883810 CATGTAAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGAGCCTA
Found at i:109889182 original size:16 final size:16
Alignment explanation
Indices: 109889161--109889194 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
109889151 AACCTTCAAC
109889161 ATAGGATATATTGCCG
1 ATAGGATATATTGCCG
109889177 ATAGGATATATTGCCG
1 ATAGGATATATTGCCG
109889193 AT
1 AT
109889195 GCCATGTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (16 bp):
ATAGGATATATTGCCG
Found at i:109889355 original size:47 final size:44
Alignment explanation
Indices: 109889244--109889457 Score: 171
Period size: 47 Copynumber: 4.7 Consensus size: 44
109889234 CGCGTACTGG
* * * *
109889244 TGCATGTCCCAGACATGTCTTACACTAGCATAACT-TTTAGCCGA
1 TGCATGTCCCAAACATGTCTTACACTGGC-TATCTCTGTAGCCGA
* * *
109889288 TGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCGA
1 TGCATGTCCCAAACATGTCTTACACTGGCTATCTCTGT--A-GCCGA
*
109889335 TGCATGTCCCAAACATGTCTTACTCTGGCACTCATCTCTGT-GCCGA
1 TGCATGTCCCAAACATGTCTTACACTGG--CT-ATCTCTGTAGCCGA
* * * *
109889381 TGCCATGTCCCAAACATGGTCTTACGCTGGCTCTCATAATGTGGCCGA
1 TG-CATGTCCCAAACAT-GTCTTACACTGGCTATC-T-CTGTAGCCGA
* ** *
109889429 AGCATGTCTTAGACATGTCTTACACTGGC
1 TGCATGTCCCAAACATGTCTTACACTGGC
109889458 GTACAAATCA
Statistics
Matches: 141, Mismatches: 17, Indels: 22
0.78 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 28 0.20
45 2 0.01
46 23 0.16
47 57 0.40
48 17 0.12
49 2 0.01
50 8 0.06
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (44 bp):
TGCATGTCCCAAACATGTCTTACACTGGCTATCTCTGTAGCCGA
Found at i:109889837 original size:30 final size:30
Alignment explanation
Indices: 109889797--109889853 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
109889787 AATTTACATC
* *
109889797 TTTGGTAAAATGACCATTTTGCCCCTAGAT
1 TTTGGCAAAATGACCATTTTACCCCTAGAT
109889827 TTTGGCAAAATGACCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
109889854 TGCCTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAT
Found at i:109890496 original size:22 final size:22
Alignment explanation
Indices: 109890471--109890512 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
109890461 CCTCTGCATC
109890471 GACGGGACTCCGCACTGCCACG
1 GACGGGACTCCGCACTGCCACG
*
109890493 GACGGGACTCCTCACTGCCA
1 GACGGGACTCCGCACTGCCA
109890513 TTGCTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.40, G:0.29, T:0.12
Consensus pattern (22 bp):
GACGGGACTCCGCACTGCCACG
Found at i:109890604 original size:6 final size:6
Alignment explanation
Indices: 109890595--109890652 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
109890585 AAGAAAGGGG
* * *
109890595 GAAGGA GAA-GA GAAAGA GAA-GA GAA-GA GAAGAA GAAGAA GAAGGA
1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA
* *
109890640 GGAGGA GGAGGA G
1 GAAGGA GAAGGA G
109890653 GCGGCATTGG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
5 15 0.32
6 32 0.68
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (6 bp):
GAAGGA
Found at i:109890613 original size:11 final size:10
Alignment explanation
Indices: 109890599--109890637 Score: 51
Period size: 11 Copynumber: 3.6 Consensus size: 10
109890589 AAGGGGGAAG
109890599 GAGAAGAGAAA
1 GAGAAGAG-AA
109890610 GAGAAGAGAA
1 GAGAAGAGAA
109890620 GAGAAGAAGAA
1 GAGAAG-AGAA
109890631 GAAGAAG
1 G-AGAAG
109890638 GAGGAGGAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 8 0.31
11 13 0.50
12 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAGAAGAGAA
Found at i:109890616 original size:5 final size:5
Alignment explanation
Indices: 109890599--109890637 Score: 51
Period size: 5 Copynumber: 7.2 Consensus size: 5
109890589 AAGGGGGAAG
109890599 GAGAA GAGAAA GAGAA GAGAA GAGAA GAAGAA GAAGAA G
1 GAGAA GAG-AA GAGAA GAGAA GAGAA G-AGAA G-AGAA G
109890638 GAGGAGGAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 16 0.50
6 16 0.50
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
GAGAA
Found at i:109890620 original size:16 final size:16
Alignment explanation
Indices: 109890599--109890637 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
109890589 AAGGGGGAAG
109890599 GAGAAGAGAA-AGAGAA
1 GAGAAGAGAAGA-AGAA
109890615 GAGAAGAGAAGAAGAA
1 GAGAAGAGAAGAAGAA
109890631 GAAGAAG
1 G-AGAAG
109890638 GAGGAGGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (16 bp):
GAGAAGAGAAGAAGAA
Found at i:109890684 original size:6 final size:6
Alignment explanation
Indices: 109890673--109890743 Score: 63
Period size: 6 Copynumber: 11.7 Consensus size: 6
109890663 TGAGGGAAGA
* * *
109890673 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AGAAGGAG AAGAAG AATAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A-AA-AAG AAAAAG AAAAAG
* * *
109890723 AGAAAG AGAAGG AAAAA- AAAA
1 AAAAAG AAAAAG AAAAAG AAAA
109890744 GGTAATATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
5 4 0.07
6 44 0.81
7 3 0.06
8 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.01
Consensus pattern (6 bp):
AAAAAG
Found at i:109890733 original size:20 final size:20
Alignment explanation
Indices: 109890676--109890733 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
109890666 GGGAAGAAAA
*
109890676 AAGAAAAAGA-AAA-AGAAA
1 AAGAAAAAGAGAAAGAGAAG
*
109890694 AAGAAAAAGAGAAGGAGAAG
1 AAGAAAAAGAGAAAGAGAAG
*
109890714 AAGAATAAGAGAAAGAGAAG
1 AAGAAAAAGAGAAAGAGAAG
109890734 GAAAAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.29
19 2 0.06
20 22 0.65
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.02
Consensus pattern (20 bp):
AAGAAAAAGAGAAAGAGAAG
Found at i:109890733 original size:26 final size:26
Alignment explanation
Indices: 109890669--109890741 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
109890659 TTGGTGAGGG
**
109890669 AAGAAAAA-AGAAAAAGAAAAAGAAA
1 AAGAAAAAGAGAAGGAGAAAAAGAAA
* *
109890694 AAGAAAAAGAGAAGGAGAAGAAGAAT
1 AAGAAAAAGAGAAGGAGAAAAAGAAA
* *
109890720 AAGAGAAAGAGAAGGAAAAAAA
1 AAGAAAAAGAGAAGGAGAAAAA
109890742 AAGGTAATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 8 0.20
26 32 0.80
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (26 bp):
AAGAAAAAGAGAAGGAGAAAAAGAAA
Found at i:109891170 original size:14 final size:16
Alignment explanation
Indices: 109891146--109891177 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
109891136 AAAATAGCTT
109891146 AATAGTATA-TTTAAA
1 AATAGTATATTTTAAA
109891161 AATA-TATATTTTAAA
1 AATAGTATATTTTAAA
109891176 AA
1 AA
109891178 ATCCGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
AATAGTATATTTTAAA
Found at i:109891667 original size:422 final size:421
Alignment explanation
Indices: 109891175--109891989 Score: 1286
Period size: 422 Copynumber: 1.9 Consensus size: 421
109891165 TATATTTTAA
* * *
109891175 AAAATCCGAAAATAAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAATATA
1 AAAATCCAAAAATAAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAAAAAA
* * *
109891240 CTAAAATAATATATATGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAAATAGTA
66 CTAAAAT-A-ATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATA-GAAAAAAATA
* * *
109891304 TATTTTGAAAAATAAAATCCGAAAATCAAATAAAAAACAAACGGCTAAAATCAGAAATTTTTACT
128 AATTTTAAAAAATAAAATCCGAAAAT-AAA-AAAAAA-AAA-GGCCAAAATCAGAAATTTTTACT
109891369 AAATTAATATAAAAAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAA-AA
189 AAATTAATAT-AAAAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAA
*
109891433 TAAAATACGAAAATAGTATATTTT-TAAA-AAAATCCGAAAACAAAATAAA-AAAA-AGCCAAAA
253 TAAAATACGAAAATAGTATATTTTAAAAATAAAATCCGAAAACAAAATAAATAAAACAGCCAAAA
* *
109891494 TCACAGATTTTTACTAAATTAATAT-AAAAACAAAAATAATACATGGAACATTATGTACTAAAAT
318 TCACAAATTTTTACTAAATTAATATAAAAAACAAAAATAATACATGAAACATTATGTACTAAAAT
109891558 AATATAAAAAAAATACGAAAATAATATATCTTAAAAAAT
383 AATATAAAAAAAATACGAAAATAATATATCTTAAAAAAT
* *
109891597 AAAATCCAAAAATAAAAATAAAAAGGGCCAAAATCAG-GGTTTTTTTCTAAATTAATATAAAAAA
1 AAAATCCAAAAAT-AAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAAAAA
*
109891661 ACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATATAAAAAAATAAA
65 ACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATAGAAAAAAATAAA
* ** *
109891726 TTTTAAAAAATAAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTTCTAAATTA
130 TTTTAAAAAATAAAATCCGAAAATAAAAAAAAAAAAGGCCAAAATCAGAAATTTTTACTAAATTA
*
109891791 ATATAAAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATA
195 ATATAAAAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATA
*
109891856 CGAAAATAGTATATTTTAAAAAATAAAATCCGAAAACAAAATAAATAAAACGGCCAAAATCACAA
260 CGAAAATAGTATATTTT-AAAAATAAAATCCGAAAACAAAATAAATAAAACAGCCAAAATCACAA
*
109891921 ATTTTTACTAAATTAATATAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATA
324 ATTTTTACTAAATTAATATAAAAAACAAAAATAATACATGAAACATTATGTACTAAAATAATATA
109891986 AAAA
389 AAAA
109891990 TAAAATCTGA
Statistics
Matches: 362, Mismatches: 22, Indels: 18
0.90 0.05 0.04
Matches are distributed among these distances:
415 50 0.14
416 55 0.15
417 3 0.01
418 8 0.02
419 24 0.07
420 64 0.18
421 45 0.12
422 91 0.25
423 22 0.06
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (421 bp):
AAAATCCAAAAATAAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAAAAAA
CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATAGAAAAAAATAAAT
TTTAAAAAATAAAATCCGAAAATAAAAAAAAAAAAGGCCAAAATCAGAAATTTTTACTAAATTAA
TATAAAAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATAC
GAAAATAGTATATTTTAAAAATAAAATCCGAAAACAAAATAAATAAAACAGCCAAAATCACAAAT
TTTTACTAAATTAATATAAAAAACAAAAATAATACATGAAACATTATGTACTAAAATAATATAAA
AAAAATACGAAAATAATATATCTTAAAAAAT
Found at i:109891708 original size:12 final size:13
Alignment explanation
Indices: 109891691--109891761 Score: 56
Period size: 14 Copynumber: 5.3 Consensus size: 13
109891681 ATTATGTACT
109891691 AAAAT-AATATAA
1 AAAATAAATATAA
109891703 AAAATAAAATATAAA
1 AAAAT-AAATAT-AA
*
109891718 AAAATAAATTTTAA
1 AAAATAAA-TATAA
**
109891732 AAAATAAA-ATCCG
1 AAAATAAATAT-AA
*
109891745 AAAATAAAAATAA
1 AAAATAAATATAA
109891758 AAAA
1 AAAA
109891762 GGCCAAAATC
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
12 6 0.13
13 12 0.26
14 20 0.43
15 9 0.19
ACGTcount: A:0.75, C:0.03, G:0.01, T:0.21
Consensus pattern (13 bp):
AAAATAAATATAA
Found at i:109891715 original size:14 final size:14
Alignment explanation
Indices: 109891696--109891741 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
109891686 GTACTAAAAT
109891696 AATATAAAAAATAA
1 AATATAAAAAATAA
109891710 AATATAAAAAAATAA
1 AATAT-AAAAAATAA
* *
109891725 ATTTTAAAAAATAA
1 AATATAAAAAATAA
109891739 AAT
1 AAT
109891742 CCGAAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATATAAAAAATAA
Found at i:109891721 original size:15 final size:15
Alignment explanation
Indices: 109891690--109891741 Score: 61
Period size: 14 Copynumber: 3.4 Consensus size: 15
109891680 CATTATGTAC
109891690 TAAAATAATATAAAAAA
1 TAAAAT-ATA-AAAAAA
109891707 TAAAATATAAAAAAA
1 TAAAATATAAAAAAA
* *
109891722 T-AAATTTTAAAAAA
1 TAAAATATAAAAAAA
109891736 TAAAAT
1 TAAAAT
109891742 CCGAAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 12 0.38
15 11 0.34
16 3 0.09
17 6 0.19
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAAATATAAAAAAA
Found at i:109891769 original size:276 final size:275
Alignment explanation
Indices: 109891173--109891995 Score: 1136
Period size: 276 Copynumber: 2.9 Consensus size: 275
109891163 TATATATTTT
109891173 AAAAAATCCGAAAATAAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAATA
1 AAAAAATCCGAAAATAAAATAAAAAAGGCCAAAATCAGA-GTTTTTTACTAAATTAATATAAA-A
* *
109891238 TACTAAAATAATATATATGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAGT
64 -ACTAAAAT-A-ATACATGAAACATTATGTACTAAAATAAT-ATAAAATAAAATACGAAAATAGT
* * * *
109891303 ATATTTTGAAAAATAAAATCCGAAAATCAAATAAAAAACAAACGGCTAAAATCAGAAATTTTTAC
125 ATATTTTAAAAAATAAAATCCAAAAAT--AATAAATAA-AAACGGCCAAAATCAGAAATTTTTAC
*
109891368 TAAATTAATATAAAAAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAA
187 TAAATTAATATAAAAAAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAA
* * * *
109891433 TAAAATACGAAAATAGTATATTTTTA
250 TAAAATACGAAAAAAATAAATTTTAA
* * * *
109891459 AAAAAATCCGAAAACAAAATAAAAAAAAGCCAAAATCACAGATTTTTACTAAATTAATATAAAAA
1 AAAAAATCCGAAAATAAAAT-AAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
* * * *
109891524 CAAAAATAATACATGGAACATTATGTACTAAAATAATATAAAA-AAAATACGAAAATAATATATC
65 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAATAAAATACGAAAATAGTATATT
* *** *
109891588 TTAAAAAATAAAATCCAAAAATAA-AAATAAAAAGGGCCAAAATCAGGGTTTTTTTCTAAATTAA
130 TTAAAAAATAAAATCCAAAAATAATAAATAAAAACGGCCAAAATCAGAAATTTTTACTAAATTAA
*
109891652 TATAAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATA-TA
195 TATAAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGA
109891716 AAAAAATAAATTTTAAAA
260 AAAAAATAAATTTT--AA
*
109891734 AATAAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTTCTAAATTAATATAAAA
1 AA-AAAATCCGAAAAT-AAAATAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAA
109891799 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATACGAAAATA
63 AACTAAAATAATACA--TGAAACATTATGTACTAAAATAATAT--AA-AATAAAATACGAAAATA
* *
109891864 GTATATTTTAAAAAATAAAATCCGAAAACAAAATAAAT-AAAACGGCCAAAATCACAAATTTTTA
123 GTATATTTTAAAAAATAAAATCC-AAAA-ATAATAAATAAAAACGGCCAAAATCAGAAATTTTTA
109891928 CTAAATTAATAT-AAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATAT-AAAAAT
186 CTAAATTAATATAAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAT
109891991 AAAAT
251 AAAAT
109891996 CTGAAAATAA
Statistics
Matches: 481, Mismatches: 41, Indels: 33
0.87 0.07 0.06
Matches are distributed among these distances:
273 12 0.02
274 39 0.08
275 3 0.01
276 97 0.20
277 27 0.06
278 2 0.00
279 25 0.05
280 39 0.08
281 7 0.01
282 29 0.06
283 47 0.10
284 56 0.12
285 36 0.07
286 45 0.09
287 17 0.04
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (275 bp):
AAAAAATCCGAAAATAAAATAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAC
TAAAATAATACATGAAACATTATGTACTAAAATAATATAAAATAAAATACGAAAATAGTATATTT
TAAAAAATAAAATCCAAAAATAATAAATAAAAACGGCCAAAATCAGAAATTTTTACTAAATTAAT
ATAAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAA
AAAAATAAATTTTAA
Found at i:109891779 original size:140 final size:140
Alignment explanation
Indices: 109891175--109892004 Score: 1112
Period size: 140 Copynumber: 5.9 Consensus size: 140
109891165 TATATTTTAA
* *
109891175 AAAATCCGAAAAT-AAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAATAT
1 AAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGA-GATTTTTACTAAATTAATATAAA-AA
*
109891239 ACTAAAATAATATATATGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAAATAGT
64 ACTAAAAT-A-ATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGT
*
109891303 ATATTTTGAAAAAT
127 ATATTTTAAAAAAT
* * *
109891317 AAAATCCGAAAATCAAATAAAAAACAAACGGCTAAAATCAGAAATTTTTACTAAATTAATATAAA
1 AAAATCCGAAAAT-AAA-AATAAA-AAA-GGCCAAAATCAGAGATTTTTACTAAATTAATAT-AA
*
109891382 AAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAAT
61 AAAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAAT
*
109891447 AGTATATTTT--TAAA-
124 AGTATATTTTAAAAAAT
* * *
109891461 AAAATCCGAAAA-CAAAATAAAAAAAAGCCAAAATCACAGATTTTTACTAAATTAATAT-AAAAA
1 AAAATCCGAAAATAAAAAT-AAAAAAGGCCAAAATCAGAGATTTTTACTAAATTAATATAAAAAA
* * *
109891524 CAAAAATAATACATGGAACATTATGTACTAAAATAATAT--AAAA-AAAATACGAAAATAATATA
65 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
*
109891586 TCTTAAAAAAT
130 TTTTAAAAAAT
* * * * *
109891597 AAAATCCAAAAATAAAAATAAAAAGGGCCAAAATCAGGGTTTTTTTCTAAATTAATATAAAAAAA
1 AAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGAGATTTTTACTAAATTAATAT-AAAAAA
* * * *
109891662 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATA-TAAAAAAATAAA
65 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
109891726 TTTTAAAAAAT
130 TTTTAAAAAAT
* *
109891737 AAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTTCTAAATTAATATAAAAAAC
1 AAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGAGATTTTTACTAAATTAATATAAAAAAC
109891802 TAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATACGAAAATAGTA
66 TAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAA-AATAAAATACGAAAATAGTA
109891867 TATTTTAAAAAAT
128 TATTTTAAAAAAT
* * *
109891880 AAAATCCGAAAA-CAAAATAAATAAAACGGCCAAAATCACAAATTTTTACTAAATTAATATAAAA
1 AAAATCCGAAAATAAAAAT-AA-AAAA-GGCCAAAATCAGAGATTTTTACTAAATTAATATAAAA
109891944 AACTAAAATAATACATGAAACATTATGTACTAAAATAATAT-AAAAATAAAAT-CTGAAAATA
63 AACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATAC-GAAAATA
109892005 AAAAATAAAA
Statistics
Matches: 616, Mismatches: 45, Indels: 55
0.86 0.06 0.08
Matches are distributed among these distances:
133 21 0.03
134 4 0.01
135 3 0.00
136 69 0.11
137 5 0.01
138 59 0.10
139 19 0.03
140 108 0.18
141 56 0.09
142 35 0.06
143 59 0.10
144 22 0.04
145 57 0.09
146 54 0.09
147 45 0.07
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (140 bp):
AAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGAGATTTTTACTAAATTAATATAAAAAAC
TAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATAT
TTTAAAAAAT
Found at i:109892002 original size:111 final size:107
Alignment explanation
Indices: 109891874--109892111 Score: 302
Period size: 111 Copynumber: 2.2 Consensus size: 107
109891864 GTATATTTTA
109891874 AAAAATAAAATCCGAAAACAAAATAAAT-AAAACGGCCAAAATCACAAATTTT-TACTAAATTAA
1 AAAAATAAAATCCGAAAA-AAAA-AAATAAAAACGGCCAAAATCACAAATTTTGTACTAAATTAA
109891937 TATAAAAAACTAAAATA-ATACATGAAACATTATGTACTAAAATAATAT
64 TATAAAAAA-T--AATACAT--ATGAAACATTATGTACTAAAATAATAT
* * * ** *
109891985 AAAAATAAAATCTGAAAATAAAAAATAAAAACGGCCAAAATCAGAGTTTTTGTTCTAAATTAATA
1 AAAAATAAAATCCGAAAAAAAAAAATAAAAACGGCCAAAATCACAAATTTTGTACTAAATTAATA
*
109892050 TAAAAAATAATACATTTGAAACATTATGTACTAAAATAATAT
66 TAAAAAATAATACATATGAAACATTATGTACTAAAATAATAT
*
109892092 AAAAAAATAAAATACGAAAA
1 --AAAAATAAAATCCGAAAA
109892112 TAGTATATTT
Statistics
Matches: 113, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
107 26 0.23
108 4 0.04
109 22 0.19
110 25 0.22
111 36 0.32
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.25
Consensus pattern (107 bp):
AAAAATAAAATCCGAAAAAAAAAAATAAAAACGGCCAAAATCACAAATTTTGTACTAAATTAATA
TAAAAAATAATACATATGAAACATTATGTACTAAAATAATAT
Found at i:109892082 original size:250 final size:254
Alignment explanation
Indices: 109891729--109892259 Score: 842
Period size: 250 Copynumber: 2.1 Consensus size: 254
109891719 AAATAAATTT
109891729 TAAAAAATAAAATCCGAAAAT-AAAAATAAAAAAGGCCAAAATCAGAGTTTTTTTCTAAATTAAT
1 TAAAAAATAAAAT-CGAAAATAAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTTCTAAATTAAT
*
109891793 ATAAAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATACG
65 AT---AAAC-AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACG
*
109891858 AAAATAGTATATTTTAAAAAATAAAATCCGAAAACAAAAT-AAATA-AAACGGCCAAAATCACAA
126 AAAATAGTATATTTTAAAAAATAAAATCCGAAAACAAAATAAAAAATAAACGGCCAAAATCACAA
109891921 ATTTTTACTAAATTAATATAAAAAACTAAAATAATACA-TGAAACATTATGTACTAAAATAATA
191 ATTTTTACTAAATTAATATAAAAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATA
*
109891984 T-AAAAATAAAATCTGAAAATAAAAAATAAAAACGGCCAAAATCAGAGTTTTTGTTCTAAATTAA
1 TAAAAAATAAAATC-GAAAATAAAAAATAAAAAAGGCCAAAATCAGAGTTTTT-TTCTAAATTAA
109892048 TAT-AA-AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAA
64 TATAAACAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAA
* * * * *
109892111 ATAGTATATTTTAAAAAATAAAATCTGAAAATAAAATAAAAAATAAACGGCCAAAATTAGAATTT
129 ATAGTATATTTTAAAAAATAAAATCCGAAAACAAAATAAAAAATAAACGGCCAAAATCACAAATT
* *
109892176 TTTATTAAATTAATATAAAAAACTAAAATAATACATTTGGAACATTATGTACTAAAATAATA
194 TTTACTAAATTAATATAAAAAACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATA
109892238 TAAAAAATAAAATACGAAAATA
1 TAAAAAATAAAAT-CGAAAATA
109892260 GTATATTTTA
Statistics
Matches: 257, Mismatches: 10, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
250 92 0.36
251 4 0.02
252 54 0.21
253 1 0.00
254 42 0.16
255 49 0.19
256 15 0.06
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.27
Consensus pattern (254 bp):
TAAAAAATAAAATCGAAAATAAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTTCTAAATTAATA
TAAACAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAAT
AGTATATTTTAAAAAATAAAATCCGAAAACAAAATAAAAAATAAACGGCCAAAATCACAAATTTT
TACTAAATTAATATAAAAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATA
Found at i:109892257 original size:25 final size:25
Alignment explanation
Indices: 109892229--109892303 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 25
109892219 ATTATGTACT
109892229 AAAATAATATAAAAAATAAAATACGA
1 AAAATAATATAAAAAATAAAATAC-A
* *
109892255 AAATAGTATATTTTAAAAAATAAAATCCA
1 AAA-A-TA-A-TATAAAAAATAAAATACA
*
109892284 AAAATAAAATAAAAAATAAA
1 AAAATAATATAAAAAATAAA
109892304 CGGCCAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
25 11 0.27
26 4 0.10
27 3 0.07
28 3 0.07
29 5 0.12
30 15 0.37
ACGTcount: A:0.71, C:0.04, G:0.03, T:0.23
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATACA
Found at i:109892288 original size:13 final size:12
Alignment explanation
Indices: 109892268--109892303 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
109892258 TAGTATATTT
109892268 TAAAAAATAAAA
1 TAAAAAATAAAA
*
109892280 TCCAAAAATAAAA
1 T-AAAAAATAAAA
109892293 TAAAAAATAAA
1 TAAAAAATAAA
109892304 CGGCCAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17
Consensus pattern (12 bp):
TAAAAAATAAAA
Found at i:109892289 original size:146 final size:147
Alignment explanation
Indices: 109891999--109892596 Score: 860
Period size: 146 Copynumber: 4.1 Consensus size: 147
109891989 ATAAAATCTG
109891999 AAAATAAAAAATAAAAACGGCCAAAATCAGAGTTTTTGT-TCTAAATTAATAT----AA--AAAA
1 AAAATAAAAAAT--AAACGGCCAAAATCAGAGTTTTT-TAT-TAAATTAATATAAAAAACTAAAA
109892057 TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTT
62 TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTT
**
109892122 TAAAAAATAAAATCTGAAAAT
127 TAAAAAATAAAATCCAAAAAT
* *
109892143 AAAATAAAAAATAAACGGCCAAAATTAGAATTTTTTATTAAATTAATATAAAAAACTAAAATAAT
1 AAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAAAAAACTAAAATAAT
*
109892208 ACATTTGGAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATAGTATATTTTAAA
66 ACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTTTAAA
109892272 AAATAAAATCCAAAAAT
131 AAATAAAATCCAAAAAT
109892289 AAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATA-AAAAAACTAAAATAAT
1 AAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAAAAAACTAAAATAAT
* * *
109892353 ACAATTGGAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTTTCAA
66 ACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTTTAAA
109892418 AAATAAAATCCAAAAAT
131 AAATAAAATCCAAAAAT
*
109892435 AAAAT-AAAAATAAACGGCCAAAATAAGAGTTTTTCTGTTTTTTATTAAATTAATATAAAAAAAC
1 AAAATAAAAAATAAACGGCCAAAATCAGA--------GTTTTTTATTAAATTAATAT-AAAAAAC
* *
109892499 TAAAATAATACATTTGAAACATTATGCACTAAAATAATAT--AAAAATAAAATACGAAAATAATA
57 TAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTA
* **
109892562 TATTTTAAAAATTTAAAATCTGAAAAT
122 TATTTTAAAAA-ATAAAATCCAAAAAT
109892589 AAAATAAA
1 AAAATAAA
109892597 TACCAAAATA
Statistics
Matches: 416, Mismatches: 18, Indels: 29
0.90 0.04 0.06
Matches are distributed among these distances:
141 12 0.03
142 22 0.05
144 12 0.03
145 70 0.17
146 148 0.36
147 38 0.09
153 51 0.12
154 17 0.04
155 46 0.11
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (147 bp):
AAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAAAAAACTAAAATAAT
ACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTTTAAA
AAATAAAATCCAAAAAT
Found at i:109892343 original size:397 final size:395
Alignment explanation
Indices: 109891589--109892405 Score: 1215
Period size: 397 Copynumber: 2.1 Consensus size: 395
109891579 TAATATATCT
* * *
109891589 TAAAAAATAAAATCCAAAA-ATAAAAATAAAAAGGGCCAAAATCAGGGTTTTTTTCTAAATTAAT
1 TAAAAAATAAAATCGAAAATA-AAAAATAAAAACGGCCAAAATCAGAGTTTTTTTCTAAATTAAT
*
109891653 ATAAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAATAAAATATAAA
65 ATAAAAAAACT-AAATAATA-ATGAAACATTATGTACTAAAATAATATAAAAAATAAAATAGAAA
* *
109891718 AAAATAAATTTTAAAAAATAAAATCCGAAAATAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTT
128 AAAATAAATTTTAAAAAATAAAATCCGAAAATAAAAAAAAAAAAGGCCAAAATCAGAATTTTTTT
109891783 CTAAATTAATATAAAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGA
193 CTAAATTAATATAAAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGA
* *
109891848 ATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAACAAAATAAATAAAACGGCCAA
258 ATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAACAAAATAAAAAAAACGGCCAA
109891913 AATCACAAATTTTTACTAAATTAATATAAAAAACTAAAATAATAC-A-TGAAACATTATGTACTA
323 AATCACAAATTTTTACTAAATTAATATAAAAAACTAAAATAATACAATTGAAACATTATGTACTA
109891976 AAATAATA
388 AAATAATA
109891984 T-AAAAATAAAATCTGAAAATAAAAAATAAAAACGGCCAAAATCAGAGTTTTTGTTCTAAATTAA
1 TAAAAAATAAAATC-GAAAATAAAAAATAAAAACGGCCAAAATCAGAGTTTTT-TTCTAAATTAA
*
109892048 TAT-AAAAAA-T-AATACAT-TTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGA
64 TATAAAAAAACTAAATA-ATAATGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATA-GA
* * * * *
109892109 AAATAGTATATTTTAAAAAATAAAATCTGAAAATAAAATAAAAAATAAACGGCCAAAATTAGAAT
126 AAAAAATAAATTTTAAAAAATAAAATCCGAAAAT-AAA-AAAAAA-AAA-GGCCAAAATCAGAAT
*
109892174 TTTTTAT-TAAATTAATATAAAAAACTAAAATAATACATTTGGAACATTATGTACTAAAATAATA
187 TTTTT-TCTAAATTAATATAAAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA
*
109892238 TAAAA-AATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAAATA
251 TAAAAGAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAACAAAAT-AAAAA-A
* ** * *
109892302 AACGGCCAAAATCAGAGTTTTTTATTAAATTAATA-AAAAAACTAAAATAATACAATTGGAACAT
314 AACGGCCAAAATCACAAATTTTTACTAAATTAATATAAAAAACTAAAATAATACAATTGAAACAT
109892366 TATGTACTAAAATAATA
379 TATGTACTAAAATAATA
109892383 TAAAAAAATAAAATACGAAAATA
1 T-AAAAAATAAAAT-CGAAAATA
109892406 GTATATTTTC
Statistics
Matches: 383, Mismatches: 21, Indels: 30
0.88 0.05 0.07
Matches are distributed among these distances:
391 26 0.07
392 17 0.04
393 33 0.09
394 16 0.04
395 45 0.12
396 67 0.17
397 101 0.26
398 34 0.09
399 25 0.07
401 18 0.05
402 1 0.00
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (395 bp):
TAAAAAATAAAATCGAAAATAAAAAATAAAAACGGCCAAAATCAGAGTTTTTTTCTAAATTAATA
TAAAAAAACTAAATAATAATGAAACATTATGTACTAAAATAATATAAAAAATAAAATAGAAAAAA
ATAAATTTTAAAAAATAAAATCCGAAAATAAAAAAAAAAAAGGCCAAAATCAGAATTTTTTTCTA
AATTAATATAAAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATA
AAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAACAAAATAAAAAAAACGGCCAAAAT
CACAAATTTTTACTAAATTAATATAAAAAACTAAAATAATACAATTGAAACATTATGTACTAAAA
TAATA
Found at i:109892433 original size:13 final size:12
Alignment explanation
Indices: 109892414--109892448 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
109892404 TAGTATATTT
109892414 TCAAAAATAAAA
1 TCAAAAATAAAA
109892426 TCCAAAAATAAAA
1 T-CAAAAATAAAA
109892439 T-AAAAATAAA
1 TCAAAAATAAA
109892449 CGGCCAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 9 0.41
12 1 0.05
13 12 0.55
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (12 bp):
TCAAAAATAAAA
Found at i:109892806 original size:28 final size:27
Alignment explanation
Indices: 109892760--109892817 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
109892750 TGTTGTCAGA
109892760 AAAACGGTTTGGTATTTTTTTGTAATT
1 AAAACGGTTTGGTATTTTTTTGTAATT
109892787 AAAACGGTTTGGTATTTTTTTGTAATT
1 AAAACGGTTTGGTATTTTTTTGTAATT
109892814 AAAA
1 AAAA
109892818 GTAATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.48
Consensus pattern (27 bp):
AAAACGGTTTGGTATTTTTTTGTAATT
Found at i:109903873 original size:17 final size:17
Alignment explanation
Indices: 109903853--109903887 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
109903843 CAATATCTTT
109903853 AAGAGATAAATATTAAA
1 AAGAGATAAATATTAAA
109903870 AAGAGATAAATATTAAA
1 AAGAGATAAATATTAAA
109903887 A
1 A
109903888 TTATACATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (17 bp):
AAGAGATAAATATTAAA
Found at i:109907124 original size:27 final size:28
Alignment explanation
Indices: 109907094--109907158 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 28
109907084 AAATAAACTA
109907094 TTTTTATAAATTTTATAA-AA-TATTATT
1 TTTTTATAAA-TTTATAATAATTATTATT
* *
109907121 TTTTTAATTAATTTATAATAATTTTTATT
1 TTTTT-ATAAATTTATAATAATTATTATT
109907150 TTTTTATAA
1 TTTTTATAA
109907159 TTTCAGATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
27 12 0.38
28 9 0.28
29 11 0.34
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (28 bp):
TTTTTATAAATTTATAATAATTATTATT
Found at i:109907125 original size:28 final size:28
Alignment explanation
Indices: 109907094--109907158 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
109907084 AAATAAACTA
109907094 TTTTTATAAATTTTATAA-AATATTAT-TT
1 TTTTTATAAA-TTTATAATAAT-TTATATT
* * *
109907122 TTTTAATTAATTTATAATAATTTTTATT
1 TTTTTATAAATTTATAATAATTTATATT
109907150 TTTTTATAA
1 TTTTTATAA
109907159 TTTCAGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
27 10 0.33
28 20 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (28 bp):
TTTTTATAAATTTATAATAATTTATATT
Found at i:109916108 original size:25 final size:25
Alignment explanation
Indices: 109916074--109916124 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
109916064 CTCGAACCCA
109916074 CGTCCTCTTGTATTAGCAACAATGT
1 CGTCCTCTTGTATTAGCAACAATGT
109916099 CGTCCTCTTGTATTAGCAACAATGT
1 CGTCCTCTTGTATTAGCAACAATGT
109916124 C
1 C
109916125 CATGCTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (25 bp):
CGTCCTCTTGTATTAGCAACAATGT
Found at i:109924708 original size:21 final size:19
Alignment explanation
Indices: 109924668--109924710 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
109924658 TTATAATTAA
*
109924668 TTAAAATATTTTTCTTTTT
1 TTAAAATATTTTACTTTTT
* *
109924687 TTAAAATATATTTAGTTATT
1 TTAAAATAT-TTTACTTTTT
109924707 TTAA
1 TTAA
109924711 TTAAAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TTAAAATATTTTACTTTTT
Found at i:109925479 original size:41 final size:41
Alignment explanation
Indices: 109925434--109925783 Score: 484
Period size: 41 Copynumber: 8.5 Consensus size: 41
109925424 AACTGAAGAA
* *
109925434 TAGCGGCGCTTCTGGAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
* *
109925475 TAGCGGCGCTTCTGGAAAAACGCTGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
* * * *
109925516 TAGCGGCGCCTTTGTAAAAACGCCGCTATAGATTGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
* * * *
109925557 TACCGGCGCTTCTGGAAAAACGCTGCTATATGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
* *
109925598 TAGCGGCACTTTTGTAAAAACGCCGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
* ** *
109925639 TAGCGGCGCTTTTGTAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
*
109925680 TAGCGGCGCTTTTGGAAAAACGCCGTTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
* ** *
109925721 TAGCGGCGCTTTTGTAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
*
109925762 TAGCGGTGCTTTTGGAAAAACG
1 TAGCGGCGCTTTTGGAAAAACG
109925784 TCGCAAAAAA
Statistics
Matches: 271, Mismatches: 38, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 271 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTAGAGGTTT
Found at i:109925479 original size:82 final size:83
Alignment explanation
Indices: 109925393--109925783 Score: 352
Period size: 82 Copynumber: 4.8 Consensus size: 83
109925383 AACAAAGCAA
* * ** *
109925393 TAGCGGCGTTTTTGATCAAAACGCTGCTAAAAACT-GAAG-AATAGCGGCGCTTCTGGAAAAACG
1 TAGCGGCGTTTTTGAT-AAAACGCTGCTAAAAGCTAGAGGTTTTAGCGGCGCTTTTGGAAAAACG
*
109925456 CCGCTATAGGTCGAGGTTT
65 CCGCTATAGGTAGAGGTTT
* * * * * *
109925475 TAGCGGCGCTTCTGGA-AAAACGCTGCT-ATAGGTAGAGGTTTTAGCGGCGCCTTTGTAAAAACG
1 TAGCGGCG-TTTTTGATAAAACGCTGCTAAAAGCTAGAGGTTTTAGCGGCGCTTTTGGAAAAACG
* *
109925538 CCGCTATAGATTGAGGTTT
65 CCGCTATAGGTAGAGGTTT
* * * * * * *
109925557 TACCGGCGCTTCTGGA-AAAACGCTGCTATATG-TAGAGGTTTTAGCGGCACTTTTGTAAAAACG
1 TAGCGGCG-TTTTTGATAAAACGCTGCTAAAAGCTAGAGGTTTTAGCGGCGCTTTTGGAAAAACG
109925620 CCGCTATAGGTAGAGGTTT
65 CCGCTATAGGTAGAGGTTT
* * * * * *
109925639 TAGCGGCGCTTTTG-TAAAAACGCCGCTATAGGC-CGATGTTTTAGCGGCGCTTTTGGAAAAACG
1 TAGCGGCGTTTTTGAT-AAAACGCTGCTAAAAGCTAGAGGTTTTAGCGGCGCTTTTGGAAAAACG
*
109925702 CCGTTATAGGTAGAGGTTT
65 CCGCTATAGGTAGAGGTTT
* * * * * * *
109925721 TAGCGGCGCTTTTG-TAAAAACGCCGCTATAGGC-CGATGTTTTAGCGGTGCTTTTGGAAAAACG
1 TAGCGGCGTTTTTGAT-AAAACGCTGCTAAAAGCTAGAGGTTTTAGCGGCGCTTTTGGAAAAACG
109925784 TCGCAAAAAA
Statistics
Matches: 269, Mismatches: 33, Indels: 14
0.85 0.10 0.04
Matches are distributed among these distances:
80 3 0.01
81 17 0.06
82 243 0.90
83 6 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (83 bp):
TAGCGGCGTTTTTGATAAAACGCTGCTAAAAGCTAGAGGTTTTAGCGGCGCTTTTGGAAAAACGC
CGCTATAGGTAGAGGTTT
Found at i:109926122 original size:18 final size:18
Alignment explanation
Indices: 109926093--109926143 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
109926083 TTGTCCCTTG
109926093 TTATATATATATATTAA-A
1 TTATA-ATATATATTAAGA
*
109926111 CTTCTAATATATATTAAGA
1 -TTATAATATATATTAAGA
109926130 TTATAATATATATT
1 TTATAATATATATT
109926144 TAGGGTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATAATATATATTAAGA
Found at i:109926580 original size:15 final size:15
Alignment explanation
Indices: 109926560--109926594 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
109926550 GATTTTAATG
*
109926560 TATAAGATAAATGTA
1 TATAAGATAAATATA
109926575 TATAAGATAAATATA
1 TATAAGATAAATATA
109926590 TATAA
1 TATAA
109926595 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
TATAAGATAAATATA
Found at i:109926633 original size:24 final size:23
Alignment explanation
Indices: 109926566--109926633 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
109926556 AATGTATAAG
* *
109926566 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAAAATAT
* *
109926591 ATAAATTATTATTTTAAAAAATAT
1 ATAAATTA-TATATGAAAAAATAT
109926615 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
109926634 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATAAATTATATATGAAAAAATAT
Found at i:109930133 original size:24 final size:24
Alignment explanation
Indices: 109930106--109930173 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
109930096 ATTATTATTG
*
109930106 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
109930130 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
109930154 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
109930174 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:109930394 original size:15 final size:15
Alignment explanation
Indices: 109930350--109930405 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
109930340 AACGACATGT
109930350 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
109930366 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
109930379 ATATTATTTAATTAA
1 ATATTATTTAATTAA
109930394 ATATTATTTAAT
1 ATATTATTTAAT
109930406 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:109930522 original size:9 final size:9
Alignment explanation
Indices: 109930510--109930726 Score: 134
Period size: 9 Copynumber: 23.6 Consensus size: 9
109930500 TATTTGATAT
*
109930510 CATAATTTA
1 CATAACTTA
109930519 CATAACTTA
1 CATAACTTA
* *
109930528 TATAACATA
1 CATAACTTA
*
109930537 TATAACTTA
1 CATAACTTA
109930546 CATAACTTA
1 CATAACTTA
* *
109930555 TATAACATA
1 CATAACTTA
109930564 CATAACTTA
1 CATAACTTA
*
109930573 TATAACTTA
1 CATAACTTA
* *
109930582 GATAA-ATA
1 CATAACTTA
*
109930590 TATAACTTA
1 CATAACTTA
109930599 CATAACTTA
1 CATAACTTA
109930608 CATAATACTTA
1 CAT-A-ACTTA
* *
109930619 AATATATTTTATA
1 CATA-A--CT-TA
*
109930632 TCATAATTTA
1 -CATAACTTA
109930642 CATAACTTA
1 CATAACTTA
109930651 CATAACTTA
1 CATAACTTA
*
109930660 TATAACTTA
1 CATAACTTA
* *
109930669 GATAA-ATA
1 CATAACTTA
* *
109930677 TATAATTTA
1 CATAACTTA
*
109930686 CATAA-ATA
1 CATAACTTA
* * *
109930694 TATATCATA
1 CATAACTTA
*
109930703 TCATAAATTA
1 -CATAACTTA
109930713 CATAACTTA
1 CATAACTTA
109930722 CATAA
1 CATAA
109930727 TACTTAAATA
Statistics
Matches: 165, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 121 0.73
10 11 0.07
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:109930532 original size:18 final size:18
Alignment explanation
Indices: 109930510--109930726 Score: 162
Period size: 18 Copynumber: 12.3 Consensus size: 18
109930500 TATTTGATAT
* *
109930510 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
109930528 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
109930546 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
109930564 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
109930582 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
109930599 CATAACTTACATAATACTTA
1 CATAACTTATAT-A-ACTTA
* *
109930619 AATATA-TTTTAT-A--T-
1 CATA-ACTTATATAACTTA
* *
109930633 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
109930651 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
109930669 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
109930686 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
109930703 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
109930722 CATAA
1 CATAA
109930727 TACTTAAATA
Statistics
Matches: 156, Mismatches: 32, Indels: 22
0.74 0.15 0.10
Matches are distributed among these distances:
13 1 0.01
14 7 0.04
15 2 0.01
17 40 0.26
18 84 0.54
19 9 0.06
20 12 0.08
21 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:109930714 original size:114 final size:114
Alignment explanation
Indices: 109930519--109930750 Score: 297
Period size: 114 Copynumber: 2.0 Consensus size: 114
109930509 TCATAATTTA
* * * * *
109930519 CATAACTTATATAACATATATAACTTACATAACTTATATAACATACATAACTTATATAACTTAGA
1 CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
* * *
109930584 TAAATATATAACTTACATAACTTACATAATACTTAAATATATTTTATAT
66 TAAATATATAAATTACATAACTTACATAATACTTAAATATATATCATAT
* * * * * *
109930633 CATAATTTACATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATA
1 CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
*
109930696 TATCATATCATAAATTACATAACTTACATAATACTTAAATATATATCATAT
66 TA-AATAT-ATAAATTACATAACTTACATAATACTTAAATATATATCATAT
109930747 CATA
1 CATA
109930751 CATAACTAGT
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
112 5 0.05
113 18 0.18
114 78 0.77
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
TAAATATATAAATTACATAACTTACATAATACTTAAATATATATCATAT
Found at i:109936795 original size:43 final size:42
Alignment explanation
Indices: 109936771--109937013 Score: 357
Period size: 43 Copynumber: 5.7 Consensus size: 42
109936761 GTAAAAAAAG
*
109936771 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGC-TTTACCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTA--CACAAA
*
109936814 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT-ACACAAA
109936857 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGC-TTTACCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTA--CACAAA
* *
109936900 CGCCGCTAAATGCCTTGACGTTTAGCGGCGCTTTTAC-CACAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACACA-AA
*
109936942 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT-ACACAAA
109936985 CGCCGCTAAAAGCCTTGACCTTTAGCGGC
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGC
109937014 ATTTTTTTCC
Statistics
Matches: 184, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
41 2 0.01
42 39 0.21
43 134 0.73
44 9 0.05
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (42 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACACAAA
Found at i:109936893 original size:86 final size:85
Alignment explanation
Indices: 109936771--109937013 Score: 432
Period size: 86 Copynumber: 2.8 Consensus size: 85
109936761 GTAAAAAAAG
*
109936771 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
*
109936836 TAGCGGCGCTTTTCCCACAAA
66 TAGCGGCGCTTTTACCAC-AA
* *
109936857 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAATGCCTTGACGTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
109936922 TAGCGGCGCTTTTACCACAA
66 TAGCGGCGCTTTTACCACAA
*
109936942 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
109937007 TAGCGGC
66 TAGCGGC
109937014 ATTTTTTTCC
Statistics
Matches: 150, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 71 0.47
86 79 0.53
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (85 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
TAGCGGCGCTTTTACCACAA
Found at i:109936984 original size:128 final size:129
Alignment explanation
Indices: 109936771--109937013 Score: 454
Period size: 128 Copynumber: 1.9 Consensus size: 129
109936761 GTAAAAAAAG
109936771 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
109936836 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAA
66 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAA
*
109936900 CGCCGCTAAATGCCTTGACGTTTAGCGGCGCTTTTA-CCAC-AACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGC-TTTACCCACAAACGCCGCTAAAAGCCTTGACCT
109936963 TTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGC
65 TTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGC
109937014 ATTTTTTTCC
Statistics
Matches: 112, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
128 74 0.66
129 34 0.30
130 4 0.04
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (129 bp):
CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
TAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACCCACAAA
Found at i:109937921 original size:16 final size:16
Alignment explanation
Indices: 109937900--109937933 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
109937890 TATTTGCAAG
109937900 ATACATCAATACTCCT
1 ATACATCAATACTCCT
109937916 ATACATCAATACTCCT
1 ATACATCAATACTCCT
109937932 AT
1 AT
109937934 GGCACTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.32
Consensus pattern (16 bp):
ATACATCAATACTCCT
Found at i:109940417 original size:24 final size:24
Alignment explanation
Indices: 109940385--109940443 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
109940375 TTCTTTCCAC
109940385 ATTCAACATTTGTAACATATAGAT
1 ATTCAACATTTGTAACATATAGAT
*
109940409 ATTCAACATTTGTAATATATAGAT
1 ATTCAACATTTGTAACATATAGAT
109940433 ATTCAACATTT
1 ATTCAACATTT
109940444 TTCTCATTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.41
Consensus pattern (24 bp):
ATTCAACATTTGTAACATATAGAT
Found at i:109952930 original size:19 final size:18
Alignment explanation
Indices: 109952892--109952929 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
109952882 CCCTAATGCA
*
109952892 TTATCTGTCTTGTTACTT
1 TTATCTGTCTTGCTACTT
109952910 TTATCTGTACTTGCTA-TT
1 TTATCTGT-CTTGCTACTT
109952928 TT
1 TT
109952930 TTTTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.13, C:0.16, G:0.11, T:0.61
Consensus pattern (18 bp):
TTATCTGTCTTGCTACTT
Found at i:109960099 original size:26 final size:26
Alignment explanation
Indices: 109960070--109960173 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
109960060 TGGTACAAAT
109960070 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
109960096 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109960122 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
109960148 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109960174 AGATGGGAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:109967188 original size:26 final size:26
Alignment explanation
Indices: 109967159--109967258 Score: 164
Period size: 26 Copynumber: 3.8 Consensus size: 26
109967149 TGGTACAAAT
109967159 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
109967185 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109967211 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
109967237 TTATAATGGTTTAGGTAAATGT
1 TGATAATGGGTTAGGTAAATGT
109967259 GTCAATATGG
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:109979622 original size:41 final size:41
Alignment explanation
Indices: 109979572--109979706 Score: 141
Period size: 41 Copynumber: 3.3 Consensus size: 41
109979562 GTAATTAATA
*
109979572 TTAATTATTTATTAAATTTAATTAGAATATATAAACTATAT
1 TTAAATATTTATTAAATTTAATTAGAATATATAAACTATAT
* * * * *
109979613 TTAAATATTTA--AATATAATAATTA-AATATTTGTAATTAGAT
1 TTAAATATTTATTAA-AT-TTAATTAGAATATAT-AAACTATAT
* *
109979654 ATTGATTATTTATTAAATTTAATTAGAATATATAAACTATAT
1 -TTAAATATTTATTAAATTTAATTAGAATATATAAACTATAT
109979696 TTAAATATTTA
1 TTAAATATTTA
109979707 AATATAATAA
Statistics
Matches: 72, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
39 2 0.03
40 8 0.11
41 31 0.43
42 21 0.29
43 8 0.11
44 2 0.03
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (41 bp):
TTAAATATTTATTAAATTTAATTAGAATATATAAACTATAT
Found at i:109979639 original size:21 final size:21
Alignment explanation
Indices: 109979613--109979727 Score: 82
Period size: 21 Copynumber: 5.5 Consensus size: 21
109979603 TAAACTATAT
109979613 TTAAATATTTAAATATAATAA
1 TTAAATATTTAAATATAATAA
*
109979634 TTAAATATTTGTAAT-TAGAT-A
1 TTAAATATTT-AAATATA-ATAA
* * *
109979655 TTGATTATTTATTAA-AT-TTAA
1 TTAAATATTTA--AATATAATAA
*
109979676 TTAGAATATATAAACTAT-AT--
1 TTA-AATATTTAAA-TATAATAA
109979696 TTAAATATTTAAATATAATAA
1 TTAAATATTTAAATATAATAA
109979717 TTAAATATTTA
1 TTAAATATTTA
109979728 TAATTAAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 24
0.68 0.09 0.23
Matches are distributed among these distances:
18 3 0.04
19 11 0.15
20 6 0.08
21 35 0.49
22 17 0.24
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (21 bp):
TTAAATATTTAAATATAATAA
Found at i:109979667 original size:83 final size:82
Alignment explanation
Indices: 109979562--109979739 Score: 320
Period size: 83 Copynumber: 2.1 Consensus size: 82
109979552 ATATTTTTAA
109979562 GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAAT
1 GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAAT
109979627 ATAATAATTAAATATTT
66 ATAATAATTAAATATTT
*
109979644 GTAATTAGATATTGATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAA
1 GTAATTA-ATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAA
109979709 TATAATAATTAAATATTT
65 TATAATAATTAAATATTT
*
109979727 ATAATTAAATATT
1 GTAATT-AATATT
109979740 TGGAAGAAGA
Statistics
Matches: 92, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
82 7 0.08
83 84 0.91
84 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (82 bp):
GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAAT
ATAATAATTAAATATTT
Found at i:109979709 original size:38 final size:38
Alignment explanation
Indices: 109979583--109979714 Score: 122
Period size: 38 Copynumber: 3.3 Consensus size: 38
109979573 TAATTATTTA
109979583 TTAAATTTAATTAGAATATATAAACTATATTTAAATAT
1 TTAAATTTAATTAGAATATATAAACTATATTTAAATAT
* * * * * *
109979621 TTAAATATAATAATTA-AATATTTGTAATTAGATATTGATTATTT
1 TTAAAT-T--TAATTAGAATATAT-AAACT--ATATTTA-AATAT
109979665 ATTAAATTTAATTAGAATATATAAACTATATTTAAATAT
1 -TTAAATTTAATTAGAATATATAAACTATATTTAAATAT
*
109979704 TTAAATATAAT
1 TTAAATTTAAT
109979715 AATTAAATAT
Statistics
Matches: 72, Mismatches: 13, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
38 16 0.22
39 4 0.06
40 12 0.17
41 9 0.12
42 9 0.12
43 12 0.17
44 4 0.06
45 6 0.08
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (38 bp):
TTAAATTTAATTAGAATATATAAACTATATTTAAATAT
Found at i:109979732 original size:14 final size:14
Alignment explanation
Indices: 109979704--109979740 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
109979694 ATTTAAATAT
*
109979704 TTAAATA-TAATAA
1 TTAAATATTTATAA
109979717 TTAAATATTTATAA
1 TTAAATATTTATAA
109979731 TTAAATATTT
1 TTAAATATTT
109979741 GGAAGAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTAAATATTTATAA
Found at i:109979734 original size:27 final size:27
Alignment explanation
Indices: 109979621--109979738 Score: 73
Period size: 27 Copynumber: 4.3 Consensus size: 27
109979611 ATTTAAATAT
*
109979621 TTAAATATAATAATTAAATATTTGTAA
1 TTAAATATAATAATTAAATATTTATAA
* * * * * *
109979648 TTAGATATTGATTATTTATTAAATT-TAA
1 TTAAATA-TAATAATTAAAT-ATTTATAA
* *
109979676 TTAGAATAT-ATAA--ACTATATTTAAATAT
1 TTA-AATATAATAATTA-AATATTT--ATAA
109979704 TTAAATATAATAATTAAATATTTATAA
1 TTAAATATAATAATTAAATATTTATAA
109979731 TTAAATAT
1 TTAAATAT
109979739 TTGGAAGAAG
Statistics
Matches: 66, Mismatches: 15, Indels: 20
0.65 0.15 0.20
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 25 0.38
28 24 0.36
29 12 0.18
30 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (27 bp):
TTAAATATAATAATTAAATATTTATAA
Found at i:109980602 original size:19 final size:19
Alignment explanation
Indices: 109980578--109980615 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
109980568 CAACAGGACC
109980578 GAAAGCACCCAAAATCAAA
1 GAAAGCACCCAAAATCAAA
109980597 GAAAGCACCCAAAATCAAA
1 GAAAGCACCCAAAATCAAA
109980616 CCTAATACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.26, G:0.11, T:0.05
Consensus pattern (19 bp):
GAAAGCACCCAAAATCAAA
Found at i:109981857 original size:50 final size:50
Alignment explanation
Indices: 109981779--109981955 Score: 291
Period size: 50 Copynumber: 3.5 Consensus size: 50
109981769 CCATGGCAAC
109981779 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
*
109981829 AACTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
* * *
109981879 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
* *
109981929 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
109981956 CTGATCAGTG
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
50 95 0.80
51 24 0.20
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
Found at i:109981969 original size:31 final size:31
Alignment explanation
Indices: 109981931--109982048 Score: 200
Period size: 31 Copynumber: 3.8 Consensus size: 31
109981921 ACAAATGACA
109981931 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
109981962 AGTGAAAAGTGGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
109981993 AATGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
109982024 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
109982049 AAGTGACAAG
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 80 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:109982186 original size:48 final size:48
Alignment explanation
Indices: 109982067--109982189 Score: 151
Period size: 47 Copynumber: 2.6 Consensus size: 48
109982057 AGTGATTTCC
* * **
109982067 ATGTAAAATCATATCTGGGATATGGCATCGGAGTGATAAGTGCATTTG
1 ATGTAAGACCATATCTGGGATATGGCATCGGAGTGATAAGTGCATAAG
* *
109982115 -TGTAAGACCATATCTGGGATATGGCATC-GATGTGATATGTGTATAAG
1 ATGTAAGACCATATCTGGGATATGGCATCGGA-GTGATAAGTGCATAAG
* *
109982162 ATGTAAGACCATAGCTGGGCTATGGCAT
1 ATGTAAGACCATATCTGGGATATGGCAT
109982190 TTTAGTAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
46 2 0.03
47 38 0.58
48 25 0.38
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (48 bp):
ATGTAAGACCATATCTGGGATATGGCATCGGAGTGATAAGTGCATAAG
Found at i:109983927 original size:20 final size:22
Alignment explanation
Indices: 109983887--109983928 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
109983877 ATTGTTAATA
*
109983887 TAATAAATATATTTTATTATTT
1 TAATAAATATATTTTAATATTT
109983909 TAATAAAT-TA-TTTAATATTT
1 TAATAAATATATTTTAATATTT
109983929 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TAATAAATATATTTTAATATTT
Found at i:109987599 original size:28 final size:28
Alignment explanation
Indices: 109987550--109987606 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
109987540 CGTACATGTA
* *
109987550 TATACAGTATTATCTTTTATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
* *
109987578 TATATAGTATGATTTTTAATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
109987606 T
1 T
109987607 TTTTTTTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (28 bp):
TATACAGTATGATCTTTAATTACTTTAT
Found at i:110000493 original size:74 final size:74
Alignment explanation
Indices: 110000160--110000569 Score: 506
Period size: 74 Copynumber: 5.4 Consensus size: 74
110000150 CTTTCCAAGG
*
110000160 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAG--ACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
*
110000223 G-TTGTCAAA
66 GTTTTTC-AA
** *
110000232 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
*
110000297 GCTTTTCAA
66 GTTTTTCAA
*
110000306 GAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCC
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG-----T-AA----
*
110000371 TGTTCAATTTATGTTTTTC-A
55 T-TTCAATTTCTGTTTTTCAA
*
110000391 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
110000456 GTTTTTCAA
66 GTTTTTCAA
** * * * *
110000465 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
**
110000530 -ACTTTCAA
66 GTTTTTCAA
*
110000538 AAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA
110000570 ACCTTTTAAT
Statistics
Matches: 302, Mismatches: 20, Indels: 31
0.86 0.06 0.09
Matches are distributed among these distances:
72 39 0.13
73 53 0.18
74 85 0.28
75 54 0.18
78 2 0.01
79 1 0.00
80 1 0.00
81 1 0.00
84 49 0.16
85 2 0.01
86 15 0.05
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
GTTTTTCAA
Found at i:110000528 original size:159 final size:159
Alignment explanation
Indices: 110000231--110000524 Score: 491
Period size: 159 Copynumber: 1.9 Consensus size: 159
110000221 CTGTTGTCAA
* *
110000231 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
**
110000296 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
110000361 TTTCAATTCCTGTTCAATTTATGTTTTTC
131 TTTCAATTCCTGTTCAATTTATGTTTTTC
* *
110000390 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* ** *
110000455 TGTTTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
110000519 TTTCAA
131 TTTCAA
110000525 ATTCTACTTT
Statistics
Matches: 125, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
158 55 0.44
159 70 0.56
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
TTTCAATTCCTGTTCAATTTATGTTTTTC
Found at i:110002140 original size:8 final size:8
Alignment explanation
Indices: 110002120--110002164 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
110002110 TATATATATC
110002120 AAAAAATAT
1 AAAAAA-AT
*
110002129 AATAAAAT
1 AAAAAAAT
*
110002137 AATAGAAAT
1 AA-AAAAAT
110002146 AAAAAAAT
1 AAAAAAAT
110002154 AAAAAAAT
1 AAAAAAAT
110002162 AAA
1 AAA
110002165 TTTTTTACCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
8 20 0.65
9 11 0.35
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (8 bp):
AAAAAAAT
Found at i:110002932 original size:28 final size:28
Alignment explanation
Indices: 110002883--110002939 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
110002873 CGTACATGTA
* *
110002883 TATACAGTATTATCTTTTATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
* *
110002911 TATATAGTATGATTTTTAATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
110002939 T
1 T
110002940 TTTTTTTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (28 bp):
TATACAGTATGATCTTTAATTACTTTAT
Found at i:110006312 original size:591 final size:591
Alignment explanation
Indices: 110005191--110006962 Score: 3526
Period size: 591 Copynumber: 3.0 Consensus size: 591
110005181 TCTTACTTGA
*
110005191 GATCCTTTACCATTTGCCGTTCTGGACTCTGTAGAAATTACTGTTTGCATGAGATTCTGTATGTC
1 GATCCTTTACCATTTGCCGTTCTGGACCCTGTAGAAATTACTGTTTGCATGAGATTCTGTATGTC
110005256 ATTTCTAGAGTATACTTTAGGCTCAGGTGTACTAGGTAGCTCAAGTCTAGGAATTTGTGTTCGAC
66 ATTTCTAGAGTATACTTTAGGCTCAGGTGTACTAGGTAGCTCAAGTCTAGGAATTTGTGTTCGAC
110005321 AATCAGTCTTTAGTGCTTGCTTTTGGAAGGATGAACTAGTAGGGCTTTGATGAGGCTTAGAATGA
131 AATCAGTCTTTAGTGCTTGCTTTTGGAAGGATGAACTAGTAGGGCTTTGATGAGGCTTAGAATGA
*
110005386 TAAGCCTCCATCACTGAGCTGCCGTTGCTGAGATTCCCAAACTGTTTTGTAACTGCTTCTTCATC
196 TAAGCCTCCATCACTGAGCTGCCGTTGCTGAGATTCCCAAATTGTTTTGTAACTGCTTCTTCATC
110005451 TTGAAACTGACTGTATTTCTGTACGGATACTGTGCTAGCATGTAAAGACCTACTAACATCTGCTG
261 TTGAAACTGACTGTATTTCTGTACGGATACTGTGCTAGCATGTAAAGACCTACTAACATCTGCTG
110005516 ATACTTTTATCTGACTATTGTCCTCATTTCTTGAGCCTTCCGAGCTCAACCTCCTTGCCCGAGTT
326 ATACTTTTATCTGACTATTGTCCTCATTTCTTGAGCCTTCCGAGCTCAACCTCCTTGCCCGAGTT
110005581 ATAGAAGATGGAATTTTTGGTCCTCTCCTGTCTTCTGCATTCATTGCCTTCTCAGATTTCATGGT
391 ATAGAAGATGGAATTTTTGGTCCTCTCCTGTCTTCTGCATTCATTGCCTTCTCAGATTTCATGGT
110005646 GCTACCATTCTCAATGCTCAACCTTCGAGTACGTGGGGGAGTTTTCGCAATCGCTGCCATTTGTT
456 GCTACCATTCTCAATGCTCAACCTTCGAGTACGTGGGGGAGTTTTCGCAATCGCTGCCATTTGTT
110005711 TCTCAAATGGAGATTTAGGTTCTTTCATTTTGTATGAAGGTGTGCTCGGTGCTTCCTTATTTGCC
521 TCTCAAATGGAGATTTAGGTTCTTTCATTTTGTATGAAGGTGTGCTCGGTGCTTCCTTATTTGCC
110005776 AATGCT
586 AATGCT
110005782 GATCCTTTACCATTTGCCGTTCTGGACCCTGTAGAAATTACTGTTTGCATGAGATTCTGTATGTC
1 GATCCTTTACCATTTGCCGTTCTGGACCCTGTAGAAATTACTGTTTGCATGAGATTCTGTATGTC
110005847 ATTTCTAGAGTATACTTTAGGCTCAGGTGTACTAGGTAGCTCAAGTCTAGGAATTTGTGTTCGAC
66 ATTTCTAGAGTATACTTTAGGCTCAGGTGTACTAGGTAGCTCAAGTCTAGGAATTTGTGTTCGAC
110005912 AATCAGTCTTTAGTGCTTGCTTTTGGAAGGATGAACTAGTAGGGCTTTGATGAGGCTTAGAATGA
131 AATCAGTCTTTAGTGCTTGCTTTTGGAAGGATGAACTAGTAGGGCTTTGATGAGGCTTAGAATGA
110005977 TAAGCCTCCATCACTGAGCTGCCGTTGCTGAGATTCCCAAATTGTTTTGTAACTGCTTCTTCATC
196 TAAGCCTCCATCACTGAGCTGCCGTTGCTGAGATTCCCAAATTGTTTTGTAACTGCTTCTTCATC
110006042 TTGAAACTGACTGTATTTCTGTACGGATACTGTGCTAGCATGTAAAGACCTACTAACATCTGCTG
261 TTGAAACTGACTGTATTTCTGTACGGATACTGTGCTAGCATGTAAAGACCTACTAACATCTGCTG
110006107 ATACTTTTATCTGACTATTGTCCTCATTTCTTGAGCCTTCCGAGCTCAACCTCCTTGCCCGAGTT
326 ATACTTTTATCTGACTATTGTCCTCATTTCTTGAGCCTTCCGAGCTCAACCTCCTTGCCCGAGTT
110006172 ATAGAAGATGGAATTTTTGGTCCTCTCCTGTCTTCTGCATTCATTGCCTTCTCAGATTTCATGGT
391 ATAGAAGATGGAATTTTTGGTCCTCTCCTGTCTTCTGCATTCATTGCCTTCTCAGATTTCATGGT
110006237 GCTACCATTCTCAATGCTCAACCTTCGAGTACGTGGGGGAGTTTTCGCAATCGCTGCCATTTGTT
456 GCTACCATTCTCAATGCTCAACCTTCGAGTACGTGGGGGAGTTTTCGCAATCGCTGCCATTTGTT
110006302 TCTCAAATGGAGATTTAGGTTCTTTCATTTTGTATGAAGGTGTGCTCGGTGCTTCCTTATTTGCC
521 TCTCAAATGGAGATTTAGGTTCTTTCATTTTGTATGAAGGTGTGCTCGGTGCTTCCTTATTTGCC
110006367 AATGCT
586 AATGCT
110006373 GATCCTTTACCATTTGCCGTTCTGGACCCTGTAGAAATTACTGTTTGCATGAGATTCTGTATGTC
1 GATCCTTTACCATTTGCCGTTCTGGACCCTGTAGAAATTACTGTTTGCATGAGATTCTGTATGTC
110006438 ATTTCTAGAGTATACTTTAGGCTCAGGTGTACTAGGTAGCTCAAGTCTAGGAATTTGTGTTCGAC
66 ATTTCTAGAGTATACTTTAGGCTCAGGTGTACTAGGTAGCTCAAGTCTAGGAATTTGTGTTCGAC
110006503 AATCAGTCTTTAGTGCTTGCTTTTGGAAGGATGAACTAGTAGGGCTTTGATGAGGCTTAGAATGA
131 AATCAGTCTTTAGTGCTTGCTTTTGGAAGGATGAACTAGTAGGGCTTTGATGAGGCTTAGAATGA
110006568 TAAGCCTCCATCACTGAGCTGCCGTTGCTGAGATTCCCAAATTGTTTTGTAACTGCTTCTTCATC
196 TAAGCCTCCATCACTGAGCTGCCGTTGCTGAGATTCCCAAATTGTTTTGTAACTGCTTCTTCATC
110006633 TTGAAACTGACTGTATTTCTGTACGGATACTGTGCTAGCATGTAAAGACCTACTAACATCTGCTG
261 TTGAAACTGACTGTATTTCTGTACGGATACTGTGCTAGCATGTAAAGACCTACTAACATCTGCTG
110006698 ATACTTTTATCTGACTATTGTCCTCATTTCTTGAGCCTTCCGAGCTCAACCTCCTTGCCCGAGTT
326 ATACTTTTATCTGACTATTGTCCTCATTTCTTGAGCCTTCCGAGCTCAACCTCCTTGCCCGAGTT
110006763 ATAGAAGATGGAATTTTTGGTCCTCTCCTGTCTTCTGCATTCATTGCCTTCTCAGATTTCATGGT
391 ATAGAAGATGGAATTTTTGGTCCTCTCCTGTCTTCTGCATTCATTGCCTTCTCAGATTTCATGGT
110006828 GCTACCATTCTCAATGCTCAACCTTCGAGTACGTGGGGGAGTTTTCGCAATCGCTGCCATTTGTT
456 GCTACCATTCTCAATGCTCAACCTTCGAGTACGTGGGGGAGTTTTCGCAATCGCTGCCATTTGTT
110006893 TCTCAAATGGAGATTTAGGTTCTTTCATTTTGTATGAAGGTGTGCTCGGTGCTTCCTTATTTGCC
521 TCTCAAATGGAGATTTAGGTTCTTTCATTTTGTATGAAGGTGTGCTCGGTGCTTCCTTATTTGCC
110006958 AATGC
586 AATGC
110006963 CTTCTTGAGG
Statistics
Matches: 1179, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
591 1179 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (591 bp):
GATCCTTTACCATTTGCCGTTCTGGACCCTGTAGAAATTACTGTTTGCATGAGATTCTGTATGTC
ATTTCTAGAGTATACTTTAGGCTCAGGTGTACTAGGTAGCTCAAGTCTAGGAATTTGTGTTCGAC
AATCAGTCTTTAGTGCTTGCTTTTGGAAGGATGAACTAGTAGGGCTTTGATGAGGCTTAGAATGA
TAAGCCTCCATCACTGAGCTGCCGTTGCTGAGATTCCCAAATTGTTTTGTAACTGCTTCTTCATC
TTGAAACTGACTGTATTTCTGTACGGATACTGTGCTAGCATGTAAAGACCTACTAACATCTGCTG
ATACTTTTATCTGACTATTGTCCTCATTTCTTGAGCCTTCCGAGCTCAACCTCCTTGCCCGAGTT
ATAGAAGATGGAATTTTTGGTCCTCTCCTGTCTTCTGCATTCATTGCCTTCTCAGATTTCATGGT
GCTACCATTCTCAATGCTCAACCTTCGAGTACGTGGGGGAGTTTTCGCAATCGCTGCCATTTGTT
TCTCAAATGGAGATTTAGGTTCTTTCATTTTGTATGAAGGTGTGCTCGGTGCTTCCTTATTTGCC
AATGCT
Found at i:110014166 original size:102 final size:102
Alignment explanation
Indices: 110014052--110014240 Score: 249
Period size: 107 Copynumber: 1.8 Consensus size: 102
110014042 CACAAGTTCA
*
110014052 TTTTTTTCATTTCAATTACAATGGTAAAATTTCAGTTTTGA-T-AGTTAAACTCAAATATAATG-
1 TTTTTTTCATTTCAATTACAATGGCAAAATTTCAGTTTTGACTCAGTTAAACTCAAATATAA-GA
110014114 TCTAATCTTTATATTTTTACGCTCTATTTTTTTCTTTT
65 TCTAATCTTTATATTTTTACGCTCTATTTTTTTCTTTT
* * * *
110014152 TTTTTTTGCTATTTCAATTATAATGGCAAAATTTTAGTTTTGATCCCTCTGTTAAACTCAAATTT
1 TTTTTTT-C-ATTTCAATTACAATGGCAAAATTTCAGTTTTGA---CTCAGTTAAACTCAAATAT
*
110014217 AAGATTTAATCTTTATATTTTTAC
61 AAGATCTAATCTTTATATTTTTAC
110014241 ACCCTTTTGT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
100 7 0.09
101 1 0.01
102 30 0.40
106 2 0.03
107 35 0.47
ACGTcount: A:0.29, C:0.12, G:0.07, T:0.52
Consensus pattern (102 bp):
TTTTTTTCATTTCAATTACAATGGCAAAATTTCAGTTTTGACTCAGTTAAACTCAAATATAAGAT
CTAATCTTTATATTTTTACGCTCTATTTTTTTCTTTT
Found at i:110033623 original size:10 final size:10
Alignment explanation
Indices: 110033608--110033636 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
110033598 AAGGAAAAAA
110033608 AAAGGGAAGG
1 AAAGGGAAGG
110033618 AAAGGGAAGG
1 AAAGGGAAGG
110033628 AAAGGGAAG
1 AAAGGGAAG
110033637 ACGAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (10 bp):
AAAGGGAAGG
Found at i:110036038 original size:56 final size:55
Alignment explanation
Indices: 110035978--110036127 Score: 176
Period size: 56 Copynumber: 2.7 Consensus size: 55
110035968 ATGTAGAAAT
* * *
110035978 ATGAAACATTTAAAAATGATTAAAGTTTTCTCCAAAATGAAAATGAAAATAGAGAA
1 ATGAAACATTTAGAAATGAATAAGGTTTTCTCCAAAATGAAAATGAAAAT-GAGAA
* * ** *
110036034 ATGAAATCATTTAGAAGTTAATGTGGTTTTCTCCAAAATGGAAATGAAAATGAGAA
1 ATGAAA-CATTTAGAAATGAATAAGGTTTTCTCCAAAATGAAAATGAAAATGAGAA
* *
110036090 ATGAATTCATTTAGAAATGAATAAGGATTTCT-CAAAAT
1 ATGAA-ACATTTAGAAATGAATAAGGTTTTCTCCAAAAT
110036128 TGATCGTAAG
Statistics
Matches: 78, Mismatches: 14, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
55 6 0.08
56 36 0.46
57 36 0.46
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (55 bp):
ATGAAACATTTAGAAATGAATAAGGTTTTCTCCAAAATGAAAATGAAAATGAGAA
Found at i:110044003 original size:24 final size:24
Alignment explanation
Indices: 110043975--110044026 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
110043965 TTAGTAGGTC
* *
110043975 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
110043999 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
110044023 AAAT
1 AAAT
110044027 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:110045875 original size:30 final size:29
Alignment explanation
Indices: 110045840--110045902 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 29
110045830 TTATATATGT
110045840 AATAGATTT-GAA-AACATAAATATGTATATA
1 AATAGATTTAGAAGAA-AT-AATATGTATA-A
*
110045870 AATAGATTTAGAAGAAATTATATGTATAA
1 AATAGATTTAGAAGAAATAATATGTATAA
110045899 AATA
1 AATA
110045903 ACATAGATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 5 0.17
30 18 0.60
31 5 0.17
32 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.11, T:0.33
Consensus pattern (29 bp):
AATAGATTTAGAAGAAATAATATGTATAA
Found at i:110054058 original size:21 final size:21
Alignment explanation
Indices: 110054024--110054074 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
110054014 AAGATAAAGA
*
110054024 TAAAATTAAACCCT-AAAACG
1 TAAAATAAAACCCTCAAAACG
*
110054044 TAAAATAAGAACCCTCAAAATG
1 TAAAATAA-AACCCTCAAAACG
110054066 TAAACATAA
1 TAAA-ATAA
110054075 TATTCTCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 6 0.23
22 9 0.35
23 4 0.15
ACGTcount: A:0.57, C:0.18, G:0.06, T:0.20
Consensus pattern (21 bp):
TAAAATAAAACCCTCAAAACG
Found at i:110056910 original size:4 final size:4
Alignment explanation
Indices: 110056890--110056972 Score: 85
Period size: 4 Copynumber: 20.8 Consensus size: 4
110056880 GAATATGTAT
* * * * *
110056890 GTGC GTGG GTGC ATGC GTGC GTGC GTGG GTGC ATGC ATGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * * *
110056938 GTGG GTGC ATGC ATGC GTGC GTGC GTAC GTGC GTG
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTG
110056973 TATGTGTATA
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
4 65 1.00
ACGTcount: A:0.07, C:0.20, G:0.47, T:0.25
Consensus pattern (4 bp):
GTGC
Found at i:110056915 original size:20 final size:20
Alignment explanation
Indices: 110056890--110056960 Score: 97
Period size: 20 Copynumber: 3.4 Consensus size: 20
110056880 GAATATGTAT
110056890 GTGCGTGGGTGCATGCGTGC
1 GTGCGTGGGTGCATGCGTGC
110056910 GTGCGTGGGTGCATGCATGCGTGC
1 GTGCGT-GG-G--TGCATGCGTGC
*
110056934 GTGCGTGGGTGCATGCATGC
1 GTGCGTGGGTGCATGCGTGC
110056954 GTGCGTG
1 GTGCGTG
110056961 CGTACGTGCG
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
20 23 0.50
21 2 0.04
22 2 0.04
23 2 0.04
24 17 0.37
ACGTcount: A:0.07, C:0.20, G:0.48, T:0.25
Consensus pattern (20 bp):
GTGCGTGGGTGCATGCGTGC
Found at i:110056969 original size:24 final size:24
Alignment explanation
Indices: 110056899--110056963 Score: 130
Period size: 24 Copynumber: 2.7 Consensus size: 24
110056889 TGTGCGTGGG
110056899 TGCATGCGTGCGTGCGTGGGTGCA
1 TGCATGCGTGCGTGCGTGGGTGCA
110056923 TGCATGCGTGCGTGCGTGGGTGCA
1 TGCATGCGTGCGTGCGTGGGTGCA
110056947 TGCATGCGTGCGTGCGT
1 TGCATGCGTGCGTGCGT
110056964 ACGTGCGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.08, C:0.22, G:0.45, T:0.26
Consensus pattern (24 bp):
TGCATGCGTGCGTGCGTGGGTGCA
Found at i:110058005 original size:29 final size:28
Alignment explanation
Indices: 110057948--110058006 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
110057938 TGAAAATGTC
*
110057948 AATTAGGGATTAAATTGAGAAAAGTATA
1 AATTAGGGATTAAATTGAGAAAAGAATA
* *
110057976 AATTGAGGGGTTAAATTGTGAAATA-AATA
1 AATT-AGGGATTAAATTGAGAAA-AGAATA
110058005 AA
1 AA
110058007 AAATATGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 4 0.15
29 21 0.81
30 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (28 bp):
AATTAGGGATTAAATTGAGAAAAGAATA
Found at i:110066234 original size:30 final size:30
Alignment explanation
Indices: 110066198--110066258 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
110066188 GAGTTTTCAG
* *
110066198 GATCCACACGGGCAGGCCACATGCCTATGT
1 GATCCACACGGGCAGACCACATGCCCATGT
110066228 GATCCACACGGGCAGACCACATGCCCATGT
1 GATCCACACGGGCAGACCACATGCCCATGT
110066258 G
1 G
110066259 CCAGCCCGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.34, G:0.26, T:0.15
Consensus pattern (30 bp):
GATCCACACGGGCAGACCACATGCCCATGT
Found at i:110067680 original size:5 final size:5
Alignment explanation
Indices: 110067670--110067706 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
110067660 GACTATTGTG
110067670 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
110067707 GAACAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:110077951 original size:29 final size:29
Alignment explanation
Indices: 110077909--110077965 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
110077899 GAAGTCGAAT
110077909 TTATAATGAAATTGGATTATTAGATACCC
1 TTATAATGAAATTGGATTATTAGATACCC
*
110077938 TTATAATGAAATTGGATTATTGGATACC
1 TTATAATGAAATTGGATTATTAGATACC
110077966 TTAGTGATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (29 bp):
TTATAATGAAATTGGATTATTAGATACCC
Found at i:110078714 original size:21 final size:21
Alignment explanation
Indices: 110078688--110078727 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
110078678 TTTGGGTGGA
110078688 TCAACTCTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
*
110078709 TCAACTCTTATGAGCTTCT
1 TCAACTCTTACGAGCTTCT
110078728 ATTGGCGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.28, G:0.12, T:0.40
Consensus pattern (21 bp):
TCAACTCTTACGAGCTTCTGT
Found at i:110084118 original size:40 final size:40
Alignment explanation
Indices: 110084063--110084290 Score: 402
Period size: 40 Copynumber: 5.7 Consensus size: 40
110084053 GAGCATTGGA
110084063 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
110084103 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
110084143 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
110084183 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
110084223 ATATATCCGGGCCAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
110084263 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
110084291 ATGTGTTTGC
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Done.