Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 333 of 349
Found at i:110466307 original size:21 final size:22
Alignment explanation
Indices: 110466269--110466309 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
110466259 AAGTTGTAAT
*
110466269 AAATTTTATTATGCAAGTTTCA
1 AAATTTTATTATGAAAGTTTCA
110466291 AAATTTT-TTATGAAAGTTT
1 AAATTTTATTATGAAAGTTT
110466310 TATTGTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.49
Consensus pattern (22 bp):
AAATTTTATTATGAAAGTTTCA
Found at i:110482638 original size:16 final size:17
Alignment explanation
Indices: 110482607--110482639 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
110482597 TTCATAAGTA
110482607 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
110482624 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
110482640 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:110483106 original size:46 final size:46
Alignment explanation
Indices: 110482925--110483106 Score: 260
Period size: 46 Copynumber: 4.0 Consensus size: 46
110482915 TTTGACATGA
* * * * *
110482925 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
*
110482971 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATC-GCGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG-GT
*
110483017 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
110483063 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
110483107 AGAGCACACT
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
45 4 0.03
46 120 0.96
47 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:110486196 original size:27 final size:26
Alignment explanation
Indices: 110486136--110486197 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
110486126 ATTTTATTTT
110486136 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
110486162 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
110486190 ATTTTATT
1 ATTTTATT
110486198 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:110498994 original size:20 final size:21
Alignment explanation
Indices: 110498971--110499012 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
110498961 TAAAAAGTTA
110498971 ATAGAAATTATTAAAA-TATT
1 ATAGAAATTATTAAAATTATT
110498991 ATAGAAATTATTAAAATTATT
1 ATAGAAATTATTAAAATTATT
110499012 A
1 A
110499013 ATTTTTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
ATAGAAATTATTAAAATTATT
Found at i:110499046 original size:20 final size:20
Alignment explanation
Indices: 110498952--110499047 Score: 70
Period size: 20 Copynumber: 4.8 Consensus size: 20
110498942 AATTCTTTTA
* *
110498952 AAAAATAATTAAAAAGTTAAT
1 AAAAATTATTAAAAAATT-AT
* *
110498973 AGAAATTATTAAAATATTAT
1 AAAAATTATTAAAAAATTAT
*
110498993 AGAAATTATT--AAAATTAT
1 AAAAATTATTAAAAAATTAT
* ** * *
110499011 TAATTTTTTTATAAAATTAT
1 AAAAATTATTAAAAAATTAT
*
110499031 AAAAAATATTAAAAAAT
1 AAAAATTATTAAAAAAT
110499048 GTAAAACCAT
Statistics
Matches: 57, Mismatches: 16, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
18 12 0.21
20 31 0.54
21 14 0.25
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (20 bp):
AAAAATTATTAAAAAATTAT
Found at i:110500499 original size:16 final size:18
Alignment explanation
Indices: 110500469--110500511 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
110500459 AGAATTTATC
* *
110500469 AATTCTAAAATACT-AAT
1 AATTTTAAAAAACTAAAT
110500486 -ATTTTAAAAAACTAAAT
1 AATTTTAAAAAACTAAAT
110500503 AATTTTAAA
1 AATTTTAAA
110500512 TATTTTCACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 11 0.50
17 3 0.14
18 8 0.36
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTTTAAAAAACTAAAT
Found at i:110511147 original size:20 final size:18
Alignment explanation
Indices: 110511124--110511176 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
110511114 TTTTTTTATC
110511124 ATTTTTATACTTTTTAAATA
1 ATTTTTATA-TTTTTAAA-A
110511144 ATTTTTA-ATTTTTAAAA
1 ATTTTTATATTTTTAAAA
110511161 ATAATTTTATATTTTT
1 AT--TTTTATATTTTT
110511177 GAGTTTTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.10
18 8 0.27
19 6 0.20
20 13 0.43
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTTATATTTTTAAAA
Found at i:110513487 original size:3 final size:3
Alignment explanation
Indices: 110513479--110513514 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
110513469 TTTCCCTACT
110513479 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
110513515 TGTCACTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:110515839 original size:14 final size:14
Alignment explanation
Indices: 110515820--110515850 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
110515810 ATTGTTTTAG
*
110515820 TTTCTTTTTATTAT
1 TTTCTTTTTATCAT
110515834 TTTCTTTTTATCAT
1 TTTCTTTTTATCAT
110515848 TTT
1 TTT
110515851 ATTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTCTTTTTATCAT
Found at i:110524180 original size:12 final size:13
Alignment explanation
Indices: 110524156--110524184 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
110524146 AGAATTTAAA
110524156 AATAAATAGAAAT
1 AATAAATAGAAAT
110524169 AATAAA-AGAAAT
1 AATAAATAGAAAT
110524181 AATA
1 AATA
110524185 TATTAAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAGAAAT
Found at i:110524360 original size:16 final size:16
Alignment explanation
Indices: 110524339--110524371 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
110524329 TAAAAGATTA
110524339 AAAGTAA-ATGATATAC
1 AAAGTAATAT-ATATAC
110524355 AAAGTAATATATATAC
1 AAAGTAATATATATAC
110524371 A
1 A
110524372 TGAAAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.27
Consensus pattern (16 bp):
AAAGTAATATATATAC
Found at i:110525980 original size:85 final size:85
Alignment explanation
Indices: 110525840--110526139 Score: 380
Period size: 84 Copynumber: 3.6 Consensus size: 85
110525830 GGAAGATAAT
* * * **
110525840 ATCTGTAATTTT-TAGCCTGTTACCCTATTGCTTAAGGGGTTAAGGCTCA-CTGTCTTTGATCTG
1 ATCTGT-ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCTGTCTTCAATCTG
110525903 CTCCACTACTATTTAGGGATAAG
65 CTCCACTACTATTTAGGG--AAG
* * * *
110525926 ATCTATATTTTTCAACCTGTTACCCTACTGCTTA-GGGGTTAAGGCTCATC-GTCTTTAATCTGC
1 ATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCTGTCTTCAATCTGC
* *
110525989 TCCACTACTGTTTAGGGGAG
66 TCCACTACTATTTAGGGAAG
*
110526009 ATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCT--TGCTATCTTCAATCTG
1 ATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCAT-CTGTCTTCAATCTG
110526072 CTCCACTACTATTTATGGG-AG
65 CTCCACTACTATTTA-GGGAAG
**
110526093 ATCTGTATTTTCCAGCCTACTACCCTACTGCTTAGGGGGTTAAGGCT
1 ATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCT
110526140 TGCATCTTCA
Statistics
Matches: 193, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
82 1 0.01
83 34 0.18
84 83 0.43
85 50 0.26
86 25 0.13
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (85 bp):
ATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCTGTCTTCAATCTGC
TCCACTACTATTTAGGGAAG
Found at i:110525998 original size:43 final size:43
Alignment explanation
Indices: 110525868--110526006 Score: 108
Period size: 43 Copynumber: 3.2 Consensus size: 43
110525858 GTTACCCTAT
*
110525868 TGCTTAAGGGGTTAAGGCTCA-CTGTCTTTGATCTGCTCCACTAC
1 TGCTT-AGGGGTTAAGGCTCATC-GTCTTTAATCTGCTCCACTAC
** * * * * * *
110525912 TATTTA-GGGATAA-GATCTAT-ATTTTTCAACCTGTTACC-CTAC
1 TGCTTAGGGGTTAAGGCTC-ATCGTCTTT-AATCTGCT-CCACTAC
110525954 TGCTTAGGGGTTAAGGCTCATCGTCTTTAATCTGCTCCACTAC
1 TGCTTAGGGGTTAAGGCTCATCGTCTTTAATCTGCTCCACTAC
*
110525997 TGTTTAGGGG
1 TGCTTAGGGG
110526007 AGATCTGTAT
Statistics
Matches: 69, Mismatches: 18, Indels: 17
0.66 0.17 0.16
Matches are distributed among these distances:
41 7 0.10
42 22 0.32
43 30 0.43
44 10 0.14
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (43 bp):
TGCTTAGGGGTTAAGGCTCATCGTCTTTAATCTGCTCCACTAC
Found at i:110526400 original size:44 final size:44
Alignment explanation
Indices: 110526350--110526490 Score: 151
Period size: 44 Copynumber: 3.2 Consensus size: 44
110526340 CTACCTCAGA
*
110526350 GAGATAAGGTCGGTGGCTAAAATCTACTCCATAGCCGATACATG
1 GAGATAAGGTCGGTTGCTAAAATCTACTCCATAGCCGATACATG
* * * * * * *
110526394 GAGATAAGACTCGCCATTTCT--GATCTGCTTCATAGTCGATACATG
1 GAGATAAG-GTCG--GTTGCTAAAATCTACTCCATAGCCGATACATG
* *
110526439 GAGATAAAGTCGGTTGCTAAAATTTACTCCATAGCCGATACATG
1 GAGATAAGGTCGGTTGCTAAAATCTACTCCATAGCCGATACATG
110526483 GAGATAAG
1 GAGATAAG
110526491 ACTGGCCATT
Statistics
Matches: 74, Mismatches: 18, Indels: 10
0.73 0.18 0.10
Matches are distributed among these distances:
42 4 0.05
44 37 0.50
45 30 0.41
47 3 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
GAGATAAGGTCGGTTGCTAAAATCTACTCCATAGCCGATACATG
Found at i:110526401 original size:177 final size:177
Alignment explanation
Indices: 110526091--110526445 Score: 516
Period size: 177 Copynumber: 2.0 Consensus size: 177
110526081 TATTTATGGG
* * * * *
110526091 AGATCTGTATTTTCCAGCCTACTACCCTACTGCTTAGGGGGTTAAGGCTTGCATCTTCAATCTAC
1 AGATATGTATTTTCCAGCCTACTAACCTACTGCTCAGGGGGTTAAGGCTCGCATCTTCAACCTAC
* ** *
110526156 TCTCTTGCTACCTTAGAGAGATAAGACCGGTGGCTAAAATCTGTTCCATAGCTGATACATAGAGA
66 TCTCTTGCTACCTCAGAGAGATAAGACCGGTGGCTAAAATCTACTCCATAGCCGATACATAGAGA
110526221 TAAGACTCGCCATTT-TCGATCTGCTCCATAGCCGATACATGGAGATA
131 TAAGACTCGCCATTTCT-GATCTGCTCCATAGCCGATACATGGAGATA
* * * *
110526268 AGATATGTAATTTT-CAGCCTATTAACCTACTGCTCAGGGGGTTAAGGCTCGTATCTTTAACCTG
1 AGATATGT-ATTTTCCAGCCTACTAACCTACTGCTCAGGGGGTTAAGGCTCGCATCTTCAACCTA
** *
110526332 CTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAAATCTACTCCATAGCCGATACATGGAG
65 CTCTCTTGCTACCTCAGAGAGATAAGACCGGTGGCTAAAATCTACTCCATAGCCGATACATAGAG
* *
110526397 ATAAGACTCGCCATTTCTGATCTGCTTCATAGTCGATACATGGAGATA
130 ATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATA
110526445 A
1 A
110526446 AGTCGGTTGC
Statistics
Matches: 158, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
177 152 0.96
178 6 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (177 bp):
AGATATGTATTTTCCAGCCTACTAACCTACTGCTCAGGGGGTTAAGGCTCGCATCTTCAACCTAC
TCTCTTGCTACCTCAGAGAGATAAGACCGGTGGCTAAAATCTACTCCATAGCCGATACATAGAGA
TAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATA
Found at i:110526434 original size:45 final size:45
Alignment explanation
Indices: 110526371--110526536 Score: 194
Period size: 45 Copynumber: 3.7 Consensus size: 45
110526361 GGTGGCTAAA
*
110526371 ATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
* * * * * *
110526416 ATCTGCTTCATAGTCGATACATGGAGATAA-AGTCG--GTTGCTAAA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCT--G
* * * *
110526460 ATTTACTCCATAGCCGATACATGGAGATAAGACTGGCCATTTGTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
110526505 ATCTGCTCCATAGCCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
110526537 TCTGTAATTT
Statistics
Matches: 97, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 4 0.04
44 30 0.31
45 60 0.62
47 3 0.03
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
Found at i:110526480 original size:89 final size:89
Alignment explanation
Indices: 110526350--110526534 Score: 307
Period size: 89 Copynumber: 2.1 Consensus size: 89
110526340 CTACCTCAGA
*
110526350 GAGATAAGGTCGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCT
1 GAGATAAAGTCGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCT
* *
110526415 GATCTGCTTCATAGTCGATACATG
66 GATCTGCTCCATAGCCGATACATG
* * * *
110526439 GAGATAAAGTCGGTTGCTAAAATTTACTCCATAGCCGATACATGGAGATAAGACTGGCCATTTGT
1 GAGATAAAGTCGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCT
110526504 GATCTGCTCCATAGCCGATACATG
66 GATCTGCTCCATAGCCGATACATG
110526528 GAGATAA
1 GAGATAA
110526535 GATCTGTAAT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (89 bp):
GAGATAAAGTCGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCT
GATCTGCTCCATAGCCGATACATG
Found at i:110526790 original size:64 final size:64
Alignment explanation
Indices: 110526664--110526791 Score: 168
Period size: 64 Copynumber: 2.0 Consensus size: 64
110526654 GCTTATGCCG
* ** * * **
110526664 AATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAGCTAGATGTGATGTTTATGTCA
1 AATAATTAGGATGCTATGATCAAAATGAATCAAATAATCCTAACTAGATGTGATATGAATGTCA
*
110526728 AATAATTAGGATGCTATGATCAAAATGAATCAAATAATCTTAACTAGATGT-ACTATGAATGTCA
1 AATAATTAGGATGCTATGATCAAAATGAATCAAATAATCCTAACTAGATGTGA-TATGAATGTCA
110526792 TTGGTATGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
63 1 0.02
64 54 0.98
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (64 bp):
AATAATTAGGATGCTATGATCAAAATGAATCAAATAATCCTAACTAGATGTGATATGAATGTCA
Found at i:110527482 original size:48 final size:47
Alignment explanation
Indices: 110527427--110527517 Score: 137
Period size: 48 Copynumber: 1.9 Consensus size: 47
110527417 CCCTTTGGTC
*
110527427 TCAAAGCGCCCTTTGCTGGTTTTCACCTTGGCCTCTCCATTTTTTTTT
1 TCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCC-TTTTTTTTT
* * *
110527475 TCAAAGCGCCCTTTTCGGGTTTTCGCCTTGGCCTTTCCTTTTT
1 TCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCTTTTT
110527518 CAGGTGAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 5 0.13
48 34 0.87
ACGTcount: A:0.09, C:0.30, G:0.16, T:0.45
Consensus pattern (47 bp):
TCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCTTTTTTTTT
Found at i:110539903 original size:16 final size:16
Alignment explanation
Indices: 110539882--110539914 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
110539872 TAAAAGATTA
110539882 AAAGTAA-ATGATATAC
1 AAAGTAATAT-ATATAC
110539898 AAAGTAATATATATAC
1 AAAGTAATATATATAC
110539914 A
1 A
110539915 TGAAAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.27
Consensus pattern (16 bp):
AAAGTAATATATATAC
Found at i:110542690 original size:18 final size:19
Alignment explanation
Indices: 110542667--110542704 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
110542657 TCTCCAATTA
*
110542667 AAATAA-ACATGATATAAT
1 AAATAACACATGATAAAAT
*
110542685 AAATAACTCATGATAAAAT
1 AAATAACACATGATAAAAT
110542704 A
1 A
110542705 TACCTGAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (19 bp):
AAATAACACATGATAAAAT
Found at i:110542985 original size:22 final size:23
Alignment explanation
Indices: 110542950--110543003 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
110542940 TTATAAATGC
110542950 AATTTAAAAGATA-TAAT-ACAAT
1 AATTT-AAAGATATTAATAACAAT
*
110542972 AATTTAAAGCATATTTAATAATAAT
1 AATTTAAAG-ATA-TTAATAACAAT
110542997 AATTTAA
1 AATTTAA
110543004 TTATAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 4 0.15
22 8 0.30
24 4 0.15
25 11 0.41
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (23 bp):
AATTTAAAGATATTAATAACAAT
Found at i:110544972 original size:12 final size:13
Alignment explanation
Indices: 110544943--110544972 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
110544933 ATAATGTCAA
110544943 AAATTAAATATAC
1 AAATTAAATATAC
110544956 AAATTAAATAT-C
1 AAATTAAATATAC
110544968 AAATT
1 AAATT
110544973 TTAGCATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTAAATATAC
Found at i:110553896 original size:16 final size:18
Alignment explanation
Indices: 110553857--110553898 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
110553847 TAAGTTTATA
110553857 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
110553874 ATTTTTATATATTATG-T
1 ATATTTATATATTATGTT
110553891 A-ATTTATA
1 ATATTTATA
110553899 ACATATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:110554034 original size:16 final size:16
Alignment explanation
Indices: 110553989--110554036 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
110553979 TAAAACATTG
*
110553989 AATAAATAAAAAT-AT
1 AATAATTAAAAATAAT
* *
110554004 ATTAATTTAAAATAAT
1 AATAATTAAAAATAAT
110554020 AATAATTAAAAATAAT
1 AATAATTAAAAATAAT
110554036 A
1 A
110554037 TGAATGGATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAATTAAAAATAAT
Found at i:110554710 original size:19 final size:18
Alignment explanation
Indices: 110554675--110554723 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
110554665 TCTCTTTCAA
110554675 TAAAAA-TTATGAAAAATT
1 TAAAAATTTAT-AAAAATT
110554693 TAAAATATTTATAAAAATT
1 TAAAA-ATTTATAAAAATT
*
110554712 TCAAAATTTATA
1 TAAAAATTTATA
110554724 TTTTTTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 12 0.43
19 12 0.43
20 4 0.14
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
TAAAAATTTATAAAAATT
Found at i:110560862 original size:20 final size:19
Alignment explanation
Indices: 110560839--110560889 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 19
110560829 AAACCTGTTC
*
110560839 ATATATTTTTTTAAATATTT
1 ATATATTTTTTT-AATAATT
110560859 ATATTATTTTAATTTAATAATT
1 ATA-TATTTT--TTTAATAATT
110560881 A-ATATTTTT
1 ATATATTTTT
110560890 ATATATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
18 1 0.04
20 9 0.33
21 7 0.26
22 7 0.26
23 3 0.11
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATATATTTTTTTAATAATT
Found at i:110571633 original size:21 final size:20
Alignment explanation
Indices: 110571607--110571657 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
110571597 CTATTTTCTC
* *
110571607 ATTAAAATTTATTTTTAAATT
1 ATTAAAATTTATATCT-AATT
*
110571628 ATTAAAATTAATATCTAATT
1 ATTAAAATTTATATCTAATT
110571648 A-TAAAATTTA
1 ATTAAAATTTA
110571658 ATTTAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 8 0.31
20 5 0.19
21 13 0.50
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTAAAATTTATATCTAATT
Found at i:110571665 original size:31 final size:29
Alignment explanation
Indices: 110571629--110571701 Score: 76
Period size: 32 Copynumber: 2.4 Consensus size: 29
110571619 TTTTAAATTA
*
110571629 TTAAAATTAATATCTAAT-TATAAAATTTAAT
1 TTAAAATTAA-ATCTAATGGA-AAAA-TTAAT
*
110571660 TTAAAAAATTAAATTTAATGGAAAAATTAAT
1 TT--AAAATTAAATCTAATGGAAAAATTAAT
110571691 TTAAAATTAAA
1 TTAAAATTAAA
110571702 GTTTAGCAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
29 9 0.24
31 9 0.24
32 10 0.27
33 9 0.24
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (29 bp):
TTAAAATTAAATCTAATGGAAAAATTAAT
Found at i:110572369 original size:6 final size:6
Alignment explanation
Indices: 110572360--110572386 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
110572350 TAGCTATAGC
110572360 TTGGCG TTGGCG TTGGCG TTGGCG TTG
1 TTGGCG TTGGCG TTGGCG TTGGCG TTG
110572387 TTATTTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.48, T:0.37
Consensus pattern (6 bp):
TTGGCG
Found at i:110582648 original size:48 final size:46
Alignment explanation
Indices: 110582567--110582700 Score: 142
Period size: 46 Copynumber: 2.9 Consensus size: 46
110582557 CAAGTGAAAG
* * * *
110582567 TAATAGTGTCTAGTTACCCATTTGGGCTAAACCTACACAAATAATGAA
1 TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTACACAAAT--CGAA
* * ** *
110582615 TCATAGTGTCTAGTTACCCATCAGGGTTGAACCTACATGAATCGGA
1 TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTACACAAATCGAA
* * *
110582661 TAATAGTGTCTGGTCACCCATTAGGGTTGAACGTACACAA
1 TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTACACAA
110582701 CAAATAGCCT
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
46 35 0.50
48 35 0.50
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (46 bp):
TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTACACAAATCGAA
Found at i:110583738 original size:31 final size:31
Alignment explanation
Indices: 110583695--110583755 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
110583685 CTTGTCACTT
110583695 GTAGCCGAAGCTACCACTAT-TCACTGATCAA
1 GTAGCCGAAGCTACCACT-TCTCACTGATCAA
*
110583726 GTAGCCGGAGCTACCACTTCTCACTGATCA
1 GTAGCCGAAGCTACCACTTCTCACTGATCA
110583756 GATTACTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 1 0.04
31 27 0.96
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTCTCACTGATCAA
Found at i:110583902 original size:35 final size:35
Alignment explanation
Indices: 110583851--110584047 Score: 209
Period size: 35 Copynumber: 5.6 Consensus size: 35
110583841 TCCTCATTGA
* *
110583851 AATACCATACCTACATTTCACAACTCGGTATGGAA
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
**
110583886 AATGA-CATACCTACATTTCTTAACTCAGTATGGAT
1 AAT-ACCATACCTACATTTCACAACTCAGTATGGAT
* * *
110583921 AATACCATACCTACGTTTCACAACTCAGTACGGTT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* * *
110583956 AATACCATACTTACGTTTCACAACTCAATATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* * ** * *
110583991 GATACTATACCTATGTTTCACAACTTAGTATGGTT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
110584026 AATATCATACCTA-AGTTTCACA
1 AATACCATACCTACA-TTTCACA
110584048 TCTTGCCATG
Statistics
Matches: 135, Mismatches: 24, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
34 1 0.01
35 133 0.99
36 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:110584035 original size:105 final size:105
Alignment explanation
Indices: 110583851--110584047 Score: 252
Period size: 105 Copynumber: 1.9 Consensus size: 105
110583841 TCCTCATTGA
** **
110583851 AATACCATACCTACATTTCACAACTCGGTATGGAAAATGACATACCTACATTTCTTAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAATATGGAAAATGACATACCTACATTTCACAACTCAGTA
*
110583916 TGGATAATACCATACCTACGTTTCACAACTCAGTACGGTT
66 TGGATAATACCATACCTAAGTTTCACAACTCAGTACGGTT
* * ** ** *
110583956 AATACCATACTTACGTTTCACAACTCAATATGGATGAT-ACTATACCTATGTTTCACAACTTAGT
1 AATACCATACCTACATTTCACAACTCAATATGGAAAATGAC-ATACCTACATTTCACAACTCAGT
* *
110584020 ATGGTTAATATCATACCTAAGTTTCACA
65 ATGGATAATACCATACCTAAGTTTCACA
110584048 TCTTGCCATG
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
104 2 0.03
105 75 0.97
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.32
Consensus pattern (105 bp):
AATACCATACCTACATTTCACAACTCAATATGGAAAATGACATACCTACATTTCACAACTCAGTA
TGGATAATACCATACCTAAGTTTCACAACTCAGTACGGTT
Found at i:110588219 original size:25 final size:27
Alignment explanation
Indices: 110588190--110588247 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
110588180 AAAAACAACC
*
110588190 AAAATCATA-AAATATATAT-TTTCAT
1 AAAATCATACAAATATATATAATTCAT
110588215 AAAAT-A-ACAAATATATATAATTCAT
1 AAAATCATACAAATATATATAATTCAT
110588240 AAAA-CATA
1 AAAATCATA
110588248 TTTGGAGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 1 0.04
24 11 0.39
25 15 0.54
26 1 0.04
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (27 bp):
AAAATCATACAAATATATATAATTCAT
Found at i:110589640 original size:13 final size:13
Alignment explanation
Indices: 110589622--110589646 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110589612 ATGAGAACAA
110589622 AACAACAACAAAC
1 AACAACAACAAAC
110589635 AACAACAACAAA
1 AACAACAACAAA
110589647 AAAAGAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00
Consensus pattern (13 bp):
AACAACAACAAAC
Found at i:110596155 original size:20 final size:19
Alignment explanation
Indices: 110596107--110596144 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
110596097 TCATATTTGA
110596107 ATCAACATTTAAATTTTTT
1 ATCAACATTTAAATTTTTT
110596126 ATCAACATTTAAATTTTTT
1 ATCAACATTTAAATTTTTT
110596145 TAGTCATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (19 bp):
ATCAACATTTAAATTTTTT
Found at i:110596218 original size:19 final size:19
Alignment explanation
Indices: 110596186--110596224 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
110596176 TCAAATAATT
*
110596186 AAATAAAAATTGATTTGTC
1 AAATAAAAACTGATTTGTC
*
110596205 AAATAGAAACTGATTTGTC
1 AAATAAAAACTGATTTGTC
110596224 A
1 A
110596225 CTAAACCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (19 bp):
AAATAAAAACTGATTTGTC
Found at i:110605048 original size:178 final size:178
Alignment explanation
Indices: 110604748--110605071 Score: 558
Period size: 178 Copynumber: 1.8 Consensus size: 178
110604738 CAATTAACAC
* * *
110604748 GTAGACTTTTGATTTTATAAGTGGTAGGATGTTAGACTTCCATTAATTGGTTTAAAGTTTGTATT
1 GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
* * * **
110604813 TGTCATGTAATTGAATTTTGGGTGTTGGTTTGCCATGACTAGGTCAGTGGCCGTCTCCCTTGGAT
66 CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGACTAGGTCAATGGCCGTCTCCCAAGGAT
*
110604878 GACAAGTTCAAAAGTAATTTGTTTTTTTTTATATGTAAGGACATTTTT
131 AACAAGTTCAAAAGTAATTTGTTTTTTTTTATATGTAAGGACATTTTT
110604926 GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
1 GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
*
110604991 CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGACTAGGTCAATGGTCGTCTCCCAAGGAT
66 CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGACTAGGTCAATGGCCGTCTCCCAAGGAT
110605056 AACAAGTTCAAAAGTA
131 AACAAGTTCAAAAGTA
110605072 TCTGATACGA
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
178 136 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (178 bp):
GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGACTAGGTCAATGGCCGTCTCCCAAGGAT
AACAAGTTCAAAAGTAATTTGTTTTTTTTTATATGTAAGGACATTTTT
Found at i:110609334 original size:17 final size:18
Alignment explanation
Indices: 110609312--110609352 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
110609302 CATTTCTTTT
110609312 TCTTTTGAATCACTC-TC
1 TCTTTTGAATCACTCATC
**
110609329 TCTTTTTTATCACTCATC
1 TCTTTTGAATCACTCATC
110609347 T-TTTTG
1 TCTTTTG
110609353 TTTTTCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTTTTGAATCACTCATC
Found at i:110611617 original size:11 final size:11
Alignment explanation
Indices: 110611602--110611640 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
110611592 TTTTCAAAAT
110611602 ATTTTTTTT-G
1 ATTTTTTTTCG
110611612 ATTTTTTTTCG
1 ATTTTTTTTCG
110611623 ATTTTTTTTCG
1 ATTTTTTTTCG
110611634 ATTTTTT
1 ATTTTTT
110611641 GAATCTACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.10, C:0.05, G:0.08, T:0.77
Consensus pattern (11 bp):
ATTTTTTTTCG
Found at i:110614006 original size:26 final size:26
Alignment explanation
Indices: 110613977--110614042 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
110613967 AGTTTAGCAT
**
110613977 TGCTTTTGAAAAGTGTTTTTAAGAAG
1 TGCTTTTGAAAAGTAATTTTAAGAAG
* * *
110614003 TGCTTTAGAAAAATAATTTTGAGAAG
1 TGCTTTTGAAAAGTAATTTTAAGAAG
*
110614029 TACTTTTGAAAAGT
1 TGCTTTTGAAAAGT
110614043 TTGGTTTAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (26 bp):
TGCTTTTGAAAAGTAATTTTAAGAAG
Found at i:110621343 original size:25 final size:26
Alignment explanation
Indices: 110621301--110621349 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
110621291 ATTATTATTA
*
110621301 AAAGTAAAGTAAATAG-AAAGAAATT
1 AAAGTAAAGTAAAAAGAAAAGAAATT
110621326 AAAGTAAAG-AACAAAGAAAAGAAA
1 AAAGTAAAGTAA-AAAGAAAAGAAA
110621350 CAGAATAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 12 0.57
26 7 0.33
ACGTcount: A:0.69, C:0.02, G:0.16, T:0.12
Consensus pattern (26 bp):
AAAGTAAAGTAAAAAGAAAAGAAATT
Found at i:110621887 original size:21 final size:23
Alignment explanation
Indices: 110621826--110621891 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
110621816 GCTTTACTGA
110621826 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* ** *
110621849 TCAGGCACCTCGTATGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
110621871 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
110621892 ACTGATCAGG
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
21 14 0.41
22 4 0.12
23 16 0.47
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.41
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:110627376 original size:25 final size:26
Alignment explanation
Indices: 110627334--110627382 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
110627324 ATTATTATTA
*
110627334 AAAGTAAAGTAAATAG-AAAGAAATT
1 AAAGTAAAGTAAAAAGAAAAGAAATT
110627359 AAAGTAAAG-AACAAAGAAAAGAAA
1 AAAGTAAAGTAA-AAAGAAAAGAAA
110627383 CAGAATAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 12 0.57
26 7 0.33
ACGTcount: A:0.69, C:0.02, G:0.16, T:0.12
Consensus pattern (26 bp):
AAAGTAAAGTAAAAAGAAAAGAAATT
Found at i:110627417 original size:4 final size:4
Alignment explanation
Indices: 110627408--110627448 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
110627398 AAAAGCAGGG
* *
110627408 GAAA GAAA GAAA GAAA G-AA GAAA GAAA -AAA AAAA GAGA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
110627449 TTAGGGTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
3 6 0.19
4 26 0.81
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:110627428 original size:15 final size:15
Alignment explanation
Indices: 110627409--110627448 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
110627399 AAAGCAGGGG
*
110627409 AAAGAAAGAAAGAAA
1 AAAGAAAGAAAAAAA
*
110627424 GAAGAAAGAAAAAAA
1 AAAGAAAGAAAAAAA
*
110627439 AAAGAGAGAA
1 AAAGAAAGAA
110627449 TTAGGGTTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAAAA
Found at i:110627897 original size:23 final size:23
Alignment explanation
Indices: 110627871--110627925 Score: 87
Period size: 21 Copynumber: 2.5 Consensus size: 23
110627861 AGGCACTTTA
*
110627871 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATATCAGGCACCTCG
110627894 TGTGTC--ATATCAGGCACCTCG
1 TGTGTCGTATATCAGGCACCTCG
110627915 TGTGTCGTATA
1 TGTGTCGTATA
110627926 CTGATCAGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 20 0.69
23 9 0.31
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (23 bp):
TGTGTCGTATATCAGGCACCTCG
Found at i:110629535 original size:100 final size:98
Alignment explanation
Indices: 110629228--110629588 Score: 406
Period size: 100 Copynumber: 3.6 Consensus size: 98
110629218 AATTATTCAA
* * * *
110629228 ACGTAAGACCATAGTTGGACCATGGCAATGTTTATATGTAAGACCATAGATGGGCTATGACATTT
1 ACGTAAGACCATGGTTGGACCATGGCAATG-TTATATGTAAGACCATAGCTGGACTATGGCATTT
*
110629293 TGATGATAAGACCATTACTGGGTTATGGCACTATAG
65 TGATGATAAGACCATAACTGGGTTATGGCA-T-TAG
* * * *
110629329 ACGTAAGACCATGGTTGGACCATGGTAATGTTATATGAAAGGCCATAGCTGAGA-TATGGCATTC
1 ACGTAAGACCATGGTTGGACCATGGCAATGTTATATGTAAGACCATAGCTG-GACTATGGCATTT
* * *
110629393 TGATGATAAGACCATAACTAGGTCATGGCACTATGG
65 TGATGATAAGACCATAACTGGGTTATGGCA-T-TAG
* *
110629429 ACGTAAGACCATGGTTGGACCATGGCAGTGTTATACGTAAGACCATAGCTGGACTATGGCATTTT
1 ACGTAAGACCATGGTTGGACCATGGCAATGTTATATGTAAGACCATAGCTGGACTATGGCATTTT
* *
110629494 GATGATAAGATCATAACTGGGTTATGACATTACG
66 GATGATAAGACCATAACTGGGTTATGGCATTA-G
* ** * * *
110629528 AATGTAAGACCATGGCAAGG-CCATGACAATG-CAGATGTAAGACCATAG-TGGGACTATGGCA
1 -ACGTAAGACCATGG-TTGGACCATGGCAATGTTATATGTAAGACCATAGCT-GGACTATGGCA
110629589 CAAGGAAATG
Statistics
Matches: 223, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
98 2 0.01
99 29 0.13
100 161 0.72
101 31 0.14
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (98 bp):
ACGTAAGACCATGGTTGGACCATGGCAATGTTATATGTAAGACCATAGCTGGACTATGGCATTTT
GATGATAAGACCATAACTGGGTTATGGCATTAG
Found at i:110630125 original size:17 final size:17
Alignment explanation
Indices: 110630105--110630203 Score: 144
Period size: 17 Copynumber: 5.6 Consensus size: 17
110630095 CAATGATATG
110630105 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
110630122 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
110630140 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
110630157 CAATCTTAGATATGATTT
1 CAATCTTAGATATGA-TA
110630175 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
110630194 CAATCTTAGA
1 CAATCTTAGA
110630204 AGATATGATT
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 31 0.42
18 31 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:110630143 original size:35 final size:35
Alignment explanation
Indices: 110630097--110630203 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
110630087 ATAATCTTCA
110630097 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
110630133 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
110630168 ATGATTTCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
110630204 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:110630145 original size:18 final size:18
Alignment explanation
Indices: 110630105--110630203 Score: 157
Period size: 18 Copynumber: 5.6 Consensus size: 18
110630095 CAATGATATG
110630105 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
110630122 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
110630140 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
110630157 CAATCTTAGATATGATTT
1 CAATCTTAGATATGATTA
110630175 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
110630194 CAATCTTAGA
1 CAATCTTAGA
110630204 AGATATGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
17 31 0.41
18 33 0.44
19 11 0.15
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:110630746 original size:17 final size:17
Alignment explanation
Indices: 110630682--110630747 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
110630672 TCTAAACCAA
*
110630682 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
110630698 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
110630717 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
110630732 TATATATTATATTTTA
1 TATATATTATATTTTA
110630748 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:110632831 original size:17 final size:17
Alignment explanation
Indices: 110632805--110632843 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
110632795 AGATTATTGA
110632805 AAGCTCAATCAGGTTGG
1 AAGCTCAATCAGGTTGG
*
110632822 AAGCTTAATCAGGTTGG
1 AAGCTCAATCAGGTTGG
110632839 AAGCT
1 AAGCT
110632844 AGTCAGAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (17 bp):
AAGCTCAATCAGGTTGG
Found at i:110634061 original size:24 final size:24
Alignment explanation
Indices: 110634034--110634086 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
110634024 TTATGAAAAG
**
110634034 AAATAACAAAGATTTTATACTAAT
1 AAATAACAAAGATACTATACTAAT
* * *
110634058 AAATATCAAATATACTATGCTAAT
1 AAATAACAAAGATACTATACTAAT
110634082 AAATA
1 AAATA
110634087 CTAAATCTCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATAACAAAGATACTATACTAAT
Found at i:110634222 original size:24 final size:23
Alignment explanation
Indices: 110634186--110634260 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
110634176 AACTCGTATC
*
110634186 TTTT-TTGTGACCCTAGTTTGCAT
1 TTTTCTTGCGACCC-AGTTTGCAT
110634209 TTTTCTTGCGACCCCAGTTCT-CAT
1 TTTTCTTGCGA-CCCAGTT-TGCAT
* *
110634233 TTTTCTTGCAAACCCAGTTCGCAT
1 TTTTCTTGC-GACCCAGTTTGCAT
110634257 TTTT
1 TTTT
110634261 ATTCTAGTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 4 0.09
24 35 0.80
25 5 0.11
ACGTcount: A:0.15, C:0.25, G:0.13, T:0.47
Consensus pattern (23 bp):
TTTTCTTGCGACCCAGTTTGCAT
Found at i:110634247 original size:25 final size:23
Alignment explanation
Indices: 110634195--110634260 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 23
110634185 CTTTTTTGTG
*
110634195 ACCCTAGTTTGCATTTTTCTTGCGA
1 ACCC-AGTTCGCATTTTTCTTGC-A
* *
110634220 CCCCAGTTCTCATTTTTCTTGCAA
1 ACCCAGTTCGCATTTTTCTTGC-A
110634244 ACCCAGTTCGCATTTTT
1 ACCCAGTTCGCATTTTT
110634261 ATTCTAGTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
24 32 0.91
25 3 0.09
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.42
Consensus pattern (23 bp):
ACCCAGTTCGCATTTTTCTTGCA
Found at i:110636808 original size:12 final size:12
Alignment explanation
Indices: 110636793--110636827 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
110636783 TTTGGCCCCC
110636793 ATATTAATTTTT
1 ATATTAATTTTT
110636805 ATATT-ATTTTT
1 ATATTAATTTTT
110636816 ATA-TAATTTTT
1 ATATTAATTTTT
110636827 A
1 A
110636828 AATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 16 0.73
12 5 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:110636839 original size:21 final size:22
Alignment explanation
Indices: 110636793--110636843 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
110636783 TTTGGCCCCC
* *
110636793 ATAT-TAATTTTTATATTATTT
1 ATATATAATTTTTATAATATAT
*
110636814 TTATATAATTTTTA-AATATAT
1 ATATATAATTTTTATAATATAT
110636835 ATATATAAT
1 ATATATAAT
110636844 ACATCAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATATATAATTTTTATAATATAT
Found at i:110636992 original size:30 final size:30
Alignment explanation
Indices: 110636956--110637018 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
110636946 ACTTAACAAG
110636956 CAAATGCC-TCTAAAATAATAACAAAATTAA
1 CAAATGCCTTC-AAAATAATAACAAAATTAA
110636986 CAAATGCCTTCAAAATAATAACAAAATTAA
1 CAAATGCCTTCAAAATAATAACAAAATTAA
110637016 CAA
1 CAA
110637019 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 30 0.94
31 2 0.06
ACGTcount: A:0.57, C:0.17, G:0.03, T:0.22
Consensus pattern (30 bp):
CAAATGCCTTCAAAATAATAACAAAATTAA
Found at i:110637073 original size:22 final size:22
Alignment explanation
Indices: 110637048--110637090 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
110637038 TATCCAAACA
110637048 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
110637070 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
110637091 AAAAAGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:110655371 original size:34 final size:33
Alignment explanation
Indices: 110655293--110655384 Score: 87
Period size: 34 Copynumber: 2.7 Consensus size: 33
110655283 CATAATGATG
* *
110655293 TATACAATATAAAATATATAAAAGAATTAATATA
1 TATAC-ATATAAAATAAATAAAAGAATTAATAAA
* *
110655327 TATAAAATATAAAATAAAGTGAAAA-AATTATTAAA
1 TAT-ACATATAAAATAAA-T-AAAAGAATTAATAAA
*
110655362 TATACATATAACATAAATTAAAA
1 TATACATATAAAATAAA-TAAAA
110655385 TACAATATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
33 4 0.08
34 27 0.56
35 13 0.27
36 4 0.08
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (33 bp):
TATACATATAAAATAAATAAAAGAATTAATAAA
Found at i:110655566 original size:3 final size:3
Alignment explanation
Indices: 110655558--110655660 Score: 63
Period size: 3 Copynumber: 33.3 Consensus size: 3
110655548 TTTAAATATA
*
110655558 AAT AAT AAT AAT -AT AAAT AAT AAT -AT ATAT AAA AAT AAT ACAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-AT AAT AAT AAT A-AT AAT
* * *
110655604 AAAT AAT ATGT AAT AAT AAT -AT AAAT ATAT AAT -AG AAT ACAA AAT
1 -AAT AAT A-AT AAT AAT AAT AAT -AAT A-AT AAT AAT AAT A-AT AAT
110655649 AAT -AT AAT AAT A
1 AAT AAT AAT AAT A
110655661 TAGTAAAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
2 9 0.11
3 50 0.63
4 20 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:110655572 original size:15 final size:15
Alignment explanation
Indices: 110655552--110655660 Score: 89
Period size: 15 Copynumber: 6.9 Consensus size: 15
110655542 TTAATATTTA
110655552 AATATAAATAATAAT
1 AATATAAATAATAAT
110655567 AATATAAATAATAAT
1 AATATAAATAATAAT
110655582 ATATATAAA-AATAAT
1 A-ATATAAATAATAAT
*
110655597 ACATAATAAATAATATGT
1 A-AT-ATAAATAATA-AT
110655615 AATAATAATATAAATATAT
1 AAT-ATAA-AT-AATA-AT
* *
110655634 AATA-GAATACAAAAT
1 AATATAAATA-ATAAT
110655649 AATAT-AATAATA
1 AATATAAATAATA
110655661 TAGTAAAAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 17
0.78 0.06 0.17
Matches are distributed among these distances:
14 2 0.03
15 36 0.45
16 16 0.20
17 12 0.15
18 5 0.06
19 9 0.11
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
AATATAAATAATAAT
Found at i:110655581 original size:18 final size:18
Alignment explanation
Indices: 110655558--110655662 Score: 94
Period size: 18 Copynumber: 5.8 Consensus size: 18
110655548 TTTAAATATA
110655558 AATAATAATAATATAAAT
1 AATAATAATAATATAAAT
110655576 AATAAT-AT-ATATAAA-
1 AATAATAATAATATAAAT
*
110655591 AATAATACATAATAAATAAT
1 AATAATA-ATAATATA-AAT
*
110655611 ATGTAATAATAATATAAAT
1 A-ATAATAATAATATAAAT
* *
110655630 ATATAAT-AGAATACAAAAT
1 A-ATAATAATAATA-TAAAT
110655649 AAT-ATAATAATATA
1 AATAATAATAATATA
110655663 GTAAAAAACA
Statistics
Matches: 71, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
15 6 0.08
16 7 0.10
17 7 0.10
18 22 0.31
19 16 0.23
20 8 0.11
21 5 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AATAATAATAATATAAAT
Found at i:110655637 original size:29 final size:29
Alignment explanation
Indices: 110655559--110655655 Score: 98
Period size: 27 Copynumber: 3.5 Consensus size: 29
110655549 TTAAATATAA
110655559 ATAATAATAATATAAATA-ATAAT-ATAT
1 ATAATAATAATATAAATATATAATAATAT
* * *
110655586 ATAAAAATAATACATA-ATA-AATAATAT
1 ATAATAATAATATAAATATATAATAATAT
*
110655613 GTAATAATAATATAAATATATAATAGA-AT
1 ATAATAATAATATAAATATATAATA-ATAT
*
110655642 ACAA-AATAATATAA
1 ATAATAATAATATAA
110655656 TAATATAGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
26 4 0.07
27 30 0.54
28 13 0.23
29 8 0.14
30 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (29 bp):
ATAATAATAATATAAATATATAATAATAT
Found at i:110657622 original size:88 final size:88
Alignment explanation
Indices: 110657521--110658005 Score: 264
Period size: 88 Copynumber: 5.5 Consensus size: 88
110657511 ATGCCAAATA
**
110657521 ATCTTGGATCTGCTTCAGTGTAAAATCATCTGATGGTTAGATCTGCTATGTATCTACTCTCCGTC
1 ATCTTGGATCTGCTTCAGTGTAAAA-CATCTGAAAGTTAGATCTGCTATGTATCTACTCTCCGTC
110657586 GAAA-TGGAGATGCCAGATCTATT
65 GAAACTGGAGATGCCAGATCTATT
** * * * * * * * *
110657609 ATCTTGGATCTGCTTTGGTGCAAGAACATCCGAAAGTCAAATCTGCTATGTCTTTGATTTGTTCC
1 ATCTTGGATCTGCTTCAGTGTAA-AACATCTGAAAGTTAGATCTGCTATGTATCT-A-CT-CTCC
* *** *
110657674 -TTGTAAACACAAGAATGCCA-A---ATC
62 GTCG-AAACTGGAG-ATGCCAGATCTATT
* * *
110657698 ATCTTGGATCTGCTTCAATAT-AAACATCTGAAAGTTAGATCTGCTATGTATCTGCTCTCCGTC-
1 ATCTTGGATCTGCTTCAGTGTAAAACATCTGAAAGTTAGATCTGCTATGTATCTACTCTCCGTCG
* *
110657761 AAAGTGGAGATGCCAGATCTGTT
66 AAACTGGAGATGCCAGATCTATT
** ** * * * * *
110657784 ATCTTGGATCTGCTTTGGTGTAAGAACATCCAAAAGTCAGATCTGCTATGTCTTCGATTTGTTCC
1 ATCTTGGATCTGCTTCAGTGTAA-AACATCTGAAAGTTAGATCTGCTATGT-ATCTA-CT-CTCC
* *** *
110657849 -TTGTAAACACAAGAATGCCA-A---ATC
62 GTCG-AAACTGGAG-ATGCCAGATCTATT
* * * * *
110657873 ATCTTAGATCTGTTTCAGTG-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTC-
1 ATCTTGGATCTGCTTCAGTGTAAAACATCTGAAAGTTAGATCTGCTATGTATCTACTCTCCGTCG
* ** * *
110657936 AAAATATAGATGTCAGATCTGTT
66 AAACTGGAGATGCCAGATCTATT
* ** * *
110657959 ATCTTGGATCTACTTTGGTGTGAGAACAT-TAGAAAGTCAGATCTGCT
1 ATCTTGGATCTGCTTCAGTGT-AAAACATCT-GAAAGTTAGATCTGCT
110658006 GTCTTCTATT
Statistics
Matches: 282, Mismatches: 87, Indels: 56
0.66 0.20 0.13
Matches are distributed among these distances:
82 11 0.04
83 12 0.04
84 6 0.02
85 4 0.01
86 36 0.13
87 50 0.18
88 88 0.31
89 40 0.14
90 5 0.02
91 9 0.03
92 9 0.03
93 12 0.04
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (88 bp):
ATCTTGGATCTGCTTCAGTGTAAAACATCTGAAAGTTAGATCTGCTATGTATCTACTCTCCGTCG
AAACTGGAGATGCCAGATCTATT
Found at i:110657740 original size:87 final size:87
Alignment explanation
Indices: 110657423--110657921 Score: 247
Period size: 87 Copynumber: 5.7 Consensus size: 87
110657413 CAAATACAGA
* * ** * * * *
110657423 AATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACA-CGTGAAAGTCAAATCTGCTGTGTCTTC
1 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-CGAAAGTCAGATCTGCTATGTCTTT
* *
110657487 GATTTGCTCCTTGTGAACACAATG
65 GATTTGTTCCTTGTAAACACAA-G
* * * ** * * *
110657511 -ATGCCAAATAATCTTGGATCTGCTTCAGTGTAAAATCATCTGATGGTTAGATCTGCTATGTATC
1 AATGCCAAATCATCTTGGATCTGCTTCAGTAT-AAA-CATCCGAAAGTCAGATCTGCTATGTCTT
* * * ***
110657575 T-A-CT-CTCCGTCG-AAA-TGGAG
64 TGATTTGTTCC-TTGTAAACACAAG
* ** *
110657595 -ATGCCAGATCTATTATCTTGGATCTGCTTTGGTGCA-AGAACATCCGAAAGTCAAATCTGCTAT
1 AATGCCA-A---ATCATCTTGGATCTGCTTCAGT--ATA-AACATCCGAAAGTCAGATCTGCTAT
110657658 GTCTTTGATTTGTTCCTTGTAAACACAAG
59 GTCTTTGATTTGTTCCTTGTAAACACAAG
* * * * *
110657687 AATGCCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAAGTTAGATCTGCTATGTATCTG
1 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCCGAAAGTCAGATCTGCTATGTCTTTG
* * * ***
110657752 --CT-CTCC--GTCAA-AGTGG
66 ATTTGTTCCTTGTAAACACAAG
* ** * *
110657768 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCAAAAGTCAGATCTGCTAT
1 A-ATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCCGAAAGTCAGATCTGCTAT
*
110657833 GTCTTCGATTTGTTCCTTGTAAACACAAG
59 GTCTTTGATTTGTTCCTTGTAAACACAAG
* * * * * *
110657862 AATGCCAAATCATCTTAGATCTGTTTCAGTGA-AATCATCTGAAGGTTAGATCTGCTATGT
1 AATGCCAAATCATCTTGGATCTGCTTCAGT-ATAAACATCCGAAAGTCAGATCTGCTATGT
110657922 ATCTGCTCTC
Statistics
Matches: 301, Mismatches: 78, Indels: 65
0.68 0.18 0.15
Matches are distributed among these distances:
81 3 0.01
82 13 0.04
84 10 0.03
85 3 0.01
86 23 0.08
87 81 0.27
88 74 0.25
89 55 0.18
90 5 0.02
91 9 0.03
92 3 0.01
93 19 0.06
94 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (87 bp):
AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCCGAAAGTCAGATCTGCTATGTCTTTG
ATTTGTTCCTTGTAAACACAAG
Found at i:110657771 original size:175 final size:174
Alignment explanation
Indices: 110657463--110658022 Score: 786
Period size: 175 Copynumber: 3.2 Consensus size: 174
110657453 GTAAACACGT
* * * *
110657463 GAAAGTCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACACAATG-ATGCCAAATAATCTTG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAA-GAATGCCAAATCATCTTG
* * *
110657527 GATCTGCTTCAGTGTAAAATCATCTGATGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATG
65 GATCTGCTTCAGTAT-AAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTC-AAATG
* *
110657592 GAGATGCCAGATCTATTATCTTGGATCTGCTTTGGTGCAAGAACATCC
127 GAGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCC
*
110657640 GAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* *
110657705 ATCTGCTTCAATATAAACATCTGAAAGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAGTGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAA-TGGAG
110657770 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCC
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCC
* * *
110657815 AAAAGTCAGATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * **
110657880 ATCTGTTTCAGTGA-AATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATATA
66 ATCTGCTTCAGT-ATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTC-AAATGGA
* * * **
110657944 GATGTCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATTA
129 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCC
* * *
110657990 GAAAGTCAGATCTGC--TGTCTTCTATTTGCTCCT
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCT
110658023 CATCGAAGAT
Statistics
Matches: 349, Mismatches: 30, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
173 16 0.05
174 3 0.01
175 252 0.72
176 8 0.02
177 70 0.20
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (174 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAATGGAGA
TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCC
Found at i:110662255 original size:14 final size:14
Alignment explanation
Indices: 110662208--110662257 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
110662198 ATAACTTTGA
*
110662208 ATGCAAATGATGCG
1 ATGCAAATGATGAG
110662222 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
110662237 ATGCAAATGCATG-G
1 ATGCAAATG-ATGAG
110662251 ATGCAAA
1 ATGCAAA
110662258 AAGGACATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 11 0.35
15 10 0.32
16 5 0.16
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.24
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:110665945 original size:18 final size:18
Alignment explanation
Indices: 110665895--110665945 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
110665885 CATAATGATG
*
110665895 TATACAATATAAAA-ATA
1 TATAAAATATAAAATATA
* *
110665912 TATAAAAGA-ATTAATATA
1 TATAAAATATA-AAATATA
110665930 TATAAAATATAAAATA
1 TATAAAATATAAAATA
110665946 AAGTGAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
16 1 0.04
17 9 0.35
18 15 0.58
19 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
TATAAAATATAAAATATA
Found at i:110666171 original size:3 final size:3
Alignment explanation
Indices: 110666163--110666265 Score: 63
Period size: 3 Copynumber: 33.3 Consensus size: 3
110666153 TTTAAATATA
*
110666163 AAT AAT AAT AAT -AT AAAT AAT AAT -AT ATAT AAA AAT AAT ACAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-AT AAT AAT AAT A-AT AAT
* * *
110666209 AAAT AAT ATGT AAT AAT AAT -AT AAAT ATAT AAT -AG AAT ACAA AAT
1 -AAT AAT A-AT AAT AAT AAT AAT -AAT A-AT AAT AAT AAT A-AT AAT
110666254 AAT -AT AAT AAT A
1 AAT AAT AAT AAT A
110666266 TAGTAAAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
2 9 0.11
3 50 0.63
4 20 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:110666177 original size:15 final size:15
Alignment explanation
Indices: 110666157--110666265 Score: 89
Period size: 15 Copynumber: 6.9 Consensus size: 15
110666147 TTAATATTTA
110666157 AATATAAATAATAAT
1 AATATAAATAATAAT
110666172 AATATAAATAATAAT
1 AATATAAATAATAAT
110666187 ATATATAAA-AATAAT
1 A-ATATAAATAATAAT
*
110666202 ACATAATAAATAATATGT
1 A-AT-ATAAATAATA-AT
110666220 AATAATAATATAAATATAT
1 AAT-ATAA-AT-AATA-AT
* *
110666239 AATA-GAATACAAAAT
1 AATATAAATA-ATAAT
110666254 AATAT-AATAATA
1 AATATAAATAATA
110666266 TAGTAAAAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 17
0.78 0.06 0.17
Matches are distributed among these distances:
14 2 0.03
15 36 0.45
16 16 0.20
17 12 0.15
18 5 0.06
19 9 0.11
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
AATATAAATAATAAT
Found at i:110666186 original size:18 final size:18
Alignment explanation
Indices: 110666163--110666267 Score: 94
Period size: 18 Copynumber: 5.8 Consensus size: 18
110666153 TTTAAATATA
110666163 AATAATAATAATATAAAT
1 AATAATAATAATATAAAT
110666181 AATAAT-AT-ATATAAA-
1 AATAATAATAATATAAAT
*
110666196 AATAATACATAATAAATAAT
1 AATAATA-ATAATATA-AAT
*
110666216 ATGTAATAATAATATAAAT
1 A-ATAATAATAATATAAAT
* *
110666235 ATATAAT-AGAATACAAAAT
1 A-ATAATAATAATA-TAAAT
110666254 AAT-ATAATAATATA
1 AATAATAATAATATA
110666268 GTAAAAAACA
Statistics
Matches: 71, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
15 6 0.08
16 7 0.10
17 7 0.10
18 22 0.31
19 16 0.23
20 8 0.11
21 5 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AATAATAATAATATAAAT
Found at i:110666242 original size:29 final size:29
Alignment explanation
Indices: 110666164--110666260 Score: 98
Period size: 27 Copynumber: 3.5 Consensus size: 29
110666154 TTAAATATAA
110666164 ATAATAATAATATAAATA-ATAAT-ATAT
1 ATAATAATAATATAAATATATAATAATAT
* * *
110666191 ATAAAAATAATACATA-ATA-AATAATAT
1 ATAATAATAATATAAATATATAATAATAT
*
110666218 GTAATAATAATATAAATATATAATAGA-AT
1 ATAATAATAATATAAATATATAATA-ATAT
*
110666247 ACAA-AATAATATAA
1 ATAATAATAATATAA
110666261 TAATATAGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
26 4 0.07
27 30 0.54
28 13 0.23
29 8 0.14
30 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (29 bp):
ATAATAATAATATAAATATATAATAATAT
Found at i:110669266 original size:17 final size:17
Alignment explanation
Indices: 110669244--110669324 Score: 146
Period size: 17 Copynumber: 4.8 Consensus size: 17
110669234 AATAGGCCGT
110669244 GTGTGGGCCACACAGGC
1 GTGTGGGCCACACAGGC
110669261 GTGTGGGCCACACAGGC
1 GTGTGGGCCACACAGGC
110669278 GTGTGGGCCACACAGGC
1 GTGTGGGCCACACAGGC
*
110669295 GTGTGGGCCACATAGGC
1 GTGTGGGCCACACAGGC
110669312 GTGTGGGCC-CACA
1 GTGTGGGCCACACA
110669325 CGGGTGAACC
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
16 3 0.05
17 59 0.95
ACGTcount: A:0.17, C:0.28, G:0.41, T:0.14
Consensus pattern (17 bp):
GTGTGGGCCACACAGGC
Found at i:110669421 original size:18 final size:18
Alignment explanation
Indices: 110669393--110669436 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
110669383 AGGCCAATTT
*
110669393 TGTGA-CCCACATGGGCG
1 TGTGAGCCCACACGGGCG
*
110669410 TGTGGGCCCACACGGGCG
1 TGTGAGCCCACACGGGCG
110669428 TGTGAGCCC
1 TGTGAGCCC
110669437 CTTTAATCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.14, C:0.32, G:0.39, T:0.16
Consensus pattern (18 bp):
TGTGAGCCCACACGGGCG
Found at i:110672223 original size:59 final size:59
Alignment explanation
Indices: 110672131--110672244 Score: 210
Period size: 59 Copynumber: 1.9 Consensus size: 59
110672121 GTATGTCTTT
*
110672131 GTTATATTTTTTTAGTTCATTTTCTGATAGATATTAAAAAACATTATAGCCAATAGCAA
1 GTTATATTTTTTTAGTTCATTTTCTGATAGATATTAAAAAAAATTATAGCCAATAGCAA
*
110672190 GTTATATTTTTTTAGTTCATTTTCTGATAGATATTAAAAAAAATTATATCCAATA
1 GTTATATTTTTTTAGTTCATTTTCTGATAGATATTAAAAAAAATTATAGCCAATA
110672245 ACAAAGCGTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (59 bp):
GTTATATTTTTTTAGTTCATTTTCTGATAGATATTAAAAAAAATTATAGCCAATAGCAA
Found at i:110672459 original size:22 final size:21
Alignment explanation
Indices: 110672434--110672490 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
110672424 ATATTAGTTG
*
110672434 AAATTAAAAATATTATTTTAAA
1 AAATTAAAAATATT-TTGTAAA
110672456 AAATGTAAAAGA-ATTTTGTAAA
1 AAAT-TAAAA-ATATTTTGTAAA
110672478 AAATTTAAAAATA
1 AAA-TTAAAAATA
110672491 ATTAAAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 1 0.03
22 19 0.63
23 9 0.30
24 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
AAATTAAAAATATTTTGTAAA
Found at i:110673605 original size:28 final size:28
Alignment explanation
Indices: 110673574--110673627 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
110673564 ATTTAGTATA
*
110673574 CAATATGATATATG-AATTTTGGTTTGCG
1 CAAT-TGATAAATGTAATTTTGGTTTGCG
* *
110673602 CAATTTATAAATGTAATTTTTGTTTG
1 CAATTGATAAATGTAATTTTGGTTTG
110673628 ATTCAATTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.30, C:0.06, G:0.17, T:0.48
Consensus pattern (28 bp):
CAATTGATAAATGTAATTTTGGTTTGCG
Found at i:110678307 original size:16 final size:16
Alignment explanation
Indices: 110678286--110678322 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
110678276 TTAAAAAAAT
110678286 TAAAATATATA-ATTTC
1 TAAAATATATAGA-TTC
110678302 TAAAATATATAGATTC
1 TAAAATATATAGATTC
110678318 TAAAA
1 TAAAA
110678323 ATGTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (16 bp):
TAAAATATATAGATTC
Found at i:110678866 original size:17 final size:17
Alignment explanation
Indices: 110678846--110678913 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 17
110678836 ATTTTTGGAT
110678846 ATTTAAATTTTTATAAA
1 ATTTAAATTTTTATAAA
*
110678863 ATTT-AATTTTCT-TGAA
1 ATTTAAATTTT-TATAAA
*
110678879 TTTTATAATTTTTAATAAA
1 ATTTA-AATTTTT-ATAAA
**
110678898 AAATAAATTTTTATAA
1 ATTTAAATTTTTATAA
110678914 TTTGTTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
16 12 0.30
17 10 0.25
18 13 0.32
19 5 0.12
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (17 bp):
ATTTAAATTTTTATAAA
Found at i:110684527 original size:14 final size:14
Alignment explanation
Indices: 110684508--110684534 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
110684498 TAATGAGTTA
110684508 GAATAAGTGTGTTG
1 GAATAAGTGTGTTG
110684522 GAATAAGTGTGTT
1 GAATAAGTGTGTT
110684535 AAAAAAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (14 bp):
GAATAAGTGTGTTG
Found at i:110688551 original size:19 final size:19
Alignment explanation
Indices: 110688526--110688596 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
110688516 ATTACAAAAA
*
110688526 AAAAAATCAAAATTATTTTC
1 AAAAATTCAAAA-TATTTTC
*
110688546 AAAAATTCAAAATATTTTTT
1 AAAAATTCAAAATA-TTTTC
* *
110688566 TAAAATACAAAATATTTAT-
1 AAAAATTCAAAATATTT-TC
110688585 AAAAATTCAAAA
1 AAAAATTCAAAA
110688597 GAATATATAC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 15 0.35
20 28 0.65
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATATTTTC
Found at i:110689449 original size:31 final size:31
Alignment explanation
Indices: 110689413--110689514 Score: 113
Period size: 31 Copynumber: 3.4 Consensus size: 31
110689403 TAATCACATT
*
110689413 AATATTAAATTAATAAAATATTATCTAGATA
1 AATATTAAATTAATAAAATAATATCTAGATA
* ** *
110689444 AATATTTAATT--TAATTTAATATCT--ATT
1 AATATTAAATTAATAAAATAATATCTAGATA
*
110689471 AATATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAATAAAATAATATCTAGATA
*
110689502 AATAGTAAATTAA
1 AATATTAAATTAA
110689515 ATTTAATATT
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
27 12 0.21
29 20 0.36
31 24 0.43
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (31 bp):
AATATTAAATTAATAAAATAATATCTAGATA
Found at i:110689500 original size:58 final size:58
Alignment explanation
Indices: 110689410--110689523 Score: 192
Period size: 58 Copynumber: 2.0 Consensus size: 58
110689400 AATTAATCAC
* * * *
110689410 ATTAATATTAAATTAATAAAATATTATCTAGATAAATATTTAATTTAATTTAATATCT
1 ATTAATATTAAATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATATCT
110689468 ATTAATATTAAATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATAT
1 ATTAATATTAAATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATAT
110689524 TAAATTTATT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (58 bp):
ATTAATATTAAATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATATCT
Found at i:110690206 original size:23 final size:22
Alignment explanation
Indices: 110690169--110690233 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
110690159 AGAGATATGC
110690169 AATCTTA-A-ATATGATATGTA
1 AATCTTAGAGATATGATATGTA
*
110690189 AATCTTAGAAGATATGATTCTGT-
1 AATCTTAG-AGATATGA-TATGTA
* *
110690212 AATCTTAGAGATTTGATTTGTA
1 AATCTTAGAGATATGATATGTA
110690234 GATAGCTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 7 0.19
21 4 0.11
22 8 0.22
23 14 0.38
24 4 0.11
ACGTcount: A:0.37, C:0.06, G:0.15, T:0.42
Consensus pattern (22 bp):
AATCTTAGAGATATGATATGTA
Found at i:110690228 original size:22 final size:22
Alignment explanation
Indices: 110690177--110690233 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
110690167 GCAATCTTAA
*
110690177 ATATGATATGTAAATCTTAGAAG
1 ATATGATTTGT-AATCTTAGAAG
110690200 ATATGATTCTGTAATCTTAG-AG
1 ATATGATT-TGTAATCTTAGAAG
*
110690222 ATTTGATTTGTA
1 ATATGATTTGTA
110690234 GATAGCTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 4 0.13
22 9 0.29
23 15 0.48
24 3 0.10
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (22 bp):
ATATGATTTGTAATCTTAGAAG
Found at i:110691348 original size:40 final size:40
Alignment explanation
Indices: 110691314--110691399 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
110691304 CCCGGATGTC
*
110691314 ATTCCAGCACGAAGCCTGCGTGTCTTTAAGCCCGGATACG
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
* *
110691354 ATTTCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
110691394 ATTCCA
1 ATTCCA
110691400 CATCAAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
Found at i:110699569 original size:40 final size:40
Alignment explanation
Indices: 110699491--110699603 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 40
110699481 TATCTAGCAC
* * *
110699491 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
*
110699530 AGCCTGCGGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
110699570 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
110699604 CATCAAATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.24
40 51 0.76
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:110703630 original size:9 final size:9
Alignment explanation
Indices: 110703616--110703645 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
110703606 TTGTGTGTTC
110703616 TTTATTTTA
1 TTTATTTTA
110703625 TTTATTTTA
1 TTTATTTTA
110703634 TTTATTTTA
1 TTTATTTTA
110703643 TTT
1 TTT
110703646 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTTA
Found at i:110705268 original size:5 final size:5
Alignment explanation
Indices: 110705258--110705289 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
110705248 TTGTGTGTTC
110705258 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
110705290 TCACATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:110705272 original size:9 final size:9
Alignment explanation
Indices: 110705258--110705288 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
110705248 TTGTGTGTTC
110705258 TTTATTTTA
1 TTTATTTTA
110705267 TTTATTTTA
1 TTTATTTTA
110705276 TTTTATTTTA
1 -TTTATTTTA
110705286 TTT
1 TTT
110705289 TTCACATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:110718112 original size:126 final size:126
Alignment explanation
Indices: 110717952--110718184 Score: 448
Period size: 126 Copynumber: 1.8 Consensus size: 126
110717942 GTTTTAGCCT
*
110717952 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATT
110718017 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAATTTTTTTAGAGTGAACTGG
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAATTTTTTTAGAGTGAACTGG
*
110718078 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATT
110718143 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAA
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAA
110718185 AATTTTGAGA
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 105 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATT
CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAATTTTTTTAGAGTGAACTGG
Found at i:110718327 original size:13 final size:12
Alignment explanation
Indices: 110718295--110718344 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
110718285 AACCATATAT
110718295 AAATAA-TAA-A
1 AAATAATTAATA
110718305 AAATAA-TAATA
1 AAATAATTAATA
*
110718316 ATAGTAATTAATA
1 A-AATAATTAATA
110718329 GAAATAATTAATA
1 -AAATAATTAATA
110718342 AAA
1 AAA
110718345 CAACAGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 9 0.26
11 2 0.06
12 7 0.21
13 15 0.44
14 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (12 bp):
AAATAATTAATA
Found at i:110718672 original size:14 final size:14
Alignment explanation
Indices: 110718653--110718683 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
110718643 ATATATTTAC
*
110718653 ATAATAAATATATA
1 ATAATAAATAAATA
110718667 ATAATAAATAAATA
1 ATAATAAATAAATA
110718681 ATA
1 ATA
110718684 TAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:110718684 original size:19 final size:18
Alignment explanation
Indices: 110718655--110718691 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
110718645 ATATTTACAT
110718655 AATAAATATATAATAATA
1 AATAAATATATAATAATA
110718673 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
110718692 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:110718769 original size:63 final size:64
Alignment explanation
Indices: 110718664--110718804 Score: 166
Period size: 63 Copynumber: 2.2 Consensus size: 64
110718654 TAATAAATAT
* *
110718664 ATAATAATAAATAAATAATATAATAATATGAAACATAACTCAAATTAATTAAATTAATAG-AAA
1 ATAATAATAAATAAATAATATAAAAATATGAAACATAACTCAAATTAATTAAATTAACAGTAAA
* * *
110718727 ATAATAATAAA-ACA-AATATAAAAATGATGAGA-ATAAAGCTCAAATTAATTAATTTAACAGTA
1 ATAATAATAAATAAATAATATAAAAAT-ATGAAACAT-AA-CTCAAATTAATTAAATTAACAGTA
110718789 AA
63 AA
*
110718791 ATAACAA-AAATAAA
1 ATAATAATAAATAAA
110718805 AAAGGGTTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
61 12 0.18
62 9 0.14
63 34 0.52
64 11 0.17
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (64 bp):
ATAATAATAAATAAATAATATAAAAATATGAAACATAACTCAAATTAATTAAATTAACAGTAAA
Found at i:110719102 original size:18 final size:18
Alignment explanation
Indices: 110719079--110719151 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
110719069 ATAACAAGTA
*
110719079 GGGTGATGGAGTTAGTGG
1 GGGTGATGGAGGTAGTGG
110719097 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
110719115 ATGGTTCA-GTAGAGT-GTGG
1 --GGGTGATGGAG-GTAGTGG
110719134 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
110719152 ATGGTTTAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
17 6 0.14
18 24 0.56
19 7 0.16
20 6 0.14
ACGTcount: A:0.18, C:0.01, G:0.55, T:0.26
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:110719143 original size:37 final size:37
Alignment explanation
Indices: 110719093--110719163 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
110719083 GATGGAGTTA
110719093 GTGGGGGTGATGGAGGTAGTGGATGGTTCAGTAGAGT
1 GTGGGGGTGATGGAGGTAGTGGATGGTTCAGTAGAGT
*
110719130 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAG
1 GTGGGGGTGATGGAGGTAGTGGATGGTTCAGTAG
110719164 GGTGATGGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.18, C:0.01, G:0.52, T:0.28
Consensus pattern (37 bp):
GTGGGGGTGATGGAGGTAGTGGATGGTTCAGTAGAGT
Found at i:110719187 original size:29 final size:29
Alignment explanation
Indices: 110719134--110719190 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
110719124 TAGAGTGTGG
* *
110719134 GGGTGATGGAGGTAGTGGATGGTTTAGTA
1 GGGTGATGGAGCTAGTGGATAGTTTAGTA
110719163 GGGTGATGGAGCTAGTGG-TCAGTTTAGT
1 GGGTGATGGAGCTAGTGGAT-AGTTTAGT
110719191 GGAGTGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.19, C:0.04, G:0.46, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGCTAGTGGATAGTTTAGTA
Found at i:110719559 original size:7 final size:7
Alignment explanation
Indices: 110719547--110719572 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
110719537 GTTTGAAATT
110719547 TTTATTA
1 TTTATTA
110719554 TTTATTA
1 TTTATTA
110719561 TTTATTA
1 TTTATTA
110719568 TTTAT
1 TTTAT
110719573 GAGTTAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTA
Found at i:110720943 original size:33 final size:33
Alignment explanation
Indices: 110720901--110721044 Score: 101
Period size: 33 Copynumber: 4.3 Consensus size: 33
110720891 GAATTGACAG
*
110720901 ATAAGACCATAACTGGGTTATGGCACTATGAAT
1 ATAAGACCATAACTGGGCTATGGCACTATGAAT
*** * * * * *
110720934 ATAAGACCATGGTTGGACTATGGTAGTGTTTATAT
1 ATAAGACCATAACTGGGCTATGGCACT-ATGA-AT
* * * *
110720969 GTAAGACCATAGCTGGGCTATGACACTCTG-AT
1 ATAAGACCATAACTGGGCTATGGCACTATGAAT
* * *
110721001 GATAAGACCATAACTAGGTTATGGCACTACGAAT
1 -ATAAGACCATAACTGGGCTATGGCACTATGAAT
*
110721035 GTAAGACCAT
1 ATAAGACCAT
110721045 GGTTGGACCA
Statistics
Matches: 81, Mismatches: 26, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
32 2 0.02
33 52 0.64
34 5 0.06
35 22 0.27
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (33 bp):
ATAAGACCATAACTGGGCTATGGCACTATGAAT
Found at i:110721058 original size:33 final size:33
Alignment explanation
Indices: 110721021--110721093 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
110721011 TAACTAGGTT
*
110721021 ATGGCACTACGA-ATGTAAGACCATGGTTGGACC
1 ATGGCACTAC-ATATGTAAGACCATAGTTGGACC
* * * *
110721054 ATGGCAATGCATGTGTAAGACCATAGTTGGACT
1 ATGGCACTACATATGTAAGACCATAGTTGGACC
110721087 ATGGCAC
1 ATGGCAC
110721094 AAAGAAAACG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
32 1 0.03
33 32 0.97
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (33 bp):
ATGGCACTACATATGTAAGACCATAGTTGGACC
Found at i:110723008 original size:23 final size:22
Alignment explanation
Indices: 110722956--110723030 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
110722946 CCTGATCAGT
** *
110722956 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
110722977 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
110722998 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
110723021 ATACGACACA
1 ATACGACACA
110723031 TAAAGTGCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:110723438 original size:15 final size:15
Alignment explanation
Indices: 110723413--110723470 Score: 82
Period size: 15 Copynumber: 3.8 Consensus size: 15
110723403 TCATATATAT
110723413 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
110723429 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
110723444 AAT-AATTCCAATCAA
1 TATAAATT-CAATCAA
110723459 TATAAATTCAAT
1 TATAAATTCAAT
110723471 AAAATCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
14 4 0.11
15 26 0.68
16 8 0.21
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:110723458 original size:30 final size:28
Alignment explanation
Indices: 110723416--110723475 Score: 102
Period size: 30 Copynumber: 2.1 Consensus size: 28
110723406 TATATATTAT
110723416 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
110723445 ATAATTCCAATCAATATAAATTCAATAAA
1 ATAATT-CAATCAATATAAATTCAATAAA
110723474 AT
1 AT
110723476 CATCGCATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.37
30 19 0.63
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:110726562 original size:17 final size:17
Alignment explanation
Indices: 110726540--110726575 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
110726530 TAAATAAGAG
* *
110726540 AAAATAAAATTGAAATA
1 AAAATAAAAATAAAATA
110726557 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
110726574 AA
1 AA
110726576 GGGACTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:110728200 original size:17 final size:17
Alignment explanation
Indices: 110728180--110728220 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
110728170 ATAAATGAGT
*
110728180 AAATGAAATAGAAATAA
1 AAATAAAATAGAAATAA
*
110728197 AAATAAAATAGTAAT-A
1 AAATAAAATAGAAATAA
110728213 AAATAAAA
1 AAATAAAA
110728221 AAAGGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (17 bp):
AAATAAAATAGAAATAA
Found at i:110728221 original size:17 final size:18
Alignment explanation
Indices: 110728185--110728248 Score: 55
Period size: 17 Copynumber: 3.8 Consensus size: 18
110728175 TGAGTAAATG
* *
110728185 AAATAGAAATAAAA-ATA
1 AAATAGTAATAAAATAGA
110728202 AAATAGTAATAAAATA-A
1 AAATAGTAATAAAATAGA
* *
110728219 AAAAAGGAA-AAAATAGA
1 AAATAGTAATAAAATAGA
*
110728236 AAA-AATAATAAAA
1 AAATAGTAATAAAA
110728249 AATAGGAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 9 0.23
17 29 0.74
18 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.16
Consensus pattern (18 bp):
AAATAGTAATAAAATAGA
Found at i:110728461 original size:19 final size:19
Alignment explanation
Indices: 110728421--110728478 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
110728411 AAATAGGGAG
110728421 AAAGGATAAG-AGAA-GAAGA
1 AAAGGA-AAGAAGAAGGAA-A
110728440 AAAGGGAAAGAAGAAGGAAA
1 AAA-GGAAAGAAGAAGGAAA
* *
110728460 AAATGACAGAAGAAGGAAA
1 AAAGGAAAGAAGAAGGAAA
110728479 GAAAAAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 20 0.59
20 11 0.32
21 3 0.09
ACGTcount: A:0.64, C:0.02, G:0.31, T:0.03
Consensus pattern (19 bp):
AAAGGAAAGAAGAAGGAAA
Found at i:110728489 original size:19 final size:19
Alignment explanation
Indices: 110728446--110728489 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
110728436 AAGAAAAGGG
*
110728446 AAAGAAGAAGGAAAAAATG
1 AAAGAAGAAGGAAAAAATA
*
110728465 ACAGAAGAAGGAAAGAAA-A
1 AAAGAAGAAGGAAA-AAATA
110728484 AAAGAA
1 AAAGAA
110728490 AAAAAAAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.70, C:0.02, G:0.25, T:0.02
Consensus pattern (19 bp):
AAAGAAGAAGGAAAAAATA
Found at i:110734747 original size:76 final size:76
Alignment explanation
Indices: 110734634--110734834 Score: 276
Period size: 76 Copynumber: 2.6 Consensus size: 76
110734624 TTATTTGACT
* * *
110734634 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCAACTAGTGTTAGGTACACAATTAATATCATCAG
1 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTAGGCACACAATTAATATCATCAG
110734699 CTAATCTAACA
66 CTAATCTAACA
* * * * *
110734710 AGCTCTAGGCGCAAATCTTTGTCGATTTATTTGACTAGTGCTGGGCACACAATTAATATCGTCAG
1 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTAGGCACACAATTAATATCATCAG
* * *
110734775 TTAATCTGACT
66 CTAATCTAACA
* * *
110734786 AGCGCTGGGTGCAAATCTTTGTTGATTTATTCGACTAGTGCAAGGCACA
1 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTAGGCACA
110734835 TCTAATGTCG
Statistics
Matches: 107, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 107 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (76 bp):
AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTAGGCACACAATTAATATCATCAG
CTAATCTAACA
Found at i:110736034 original size:18 final size:17
Alignment explanation
Indices: 110735991--110736034 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
110735981 GCCGTGTGTC
110735991 CTATGTTTTCTAAATTTT
1 CTAT-TTTTCTAAATTTT
*
110736009 CAACTTTTTCTAAATTTTT
1 CTA-TTTTTCTAAA-TTTT
110736028 CTATTTT
1 CTATTTT
110736035 GTTTCGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.23, C:0.14, G:0.02, T:0.61
Consensus pattern (17 bp):
CTATTTTTCTAAATTTT
Found at i:110739071 original size:17 final size:17
Alignment explanation
Indices: 110739049--110739082 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
110739039 ATCTGAAATT
*
110739049 TTCAGTAGTTGCTTTGG
1 TTCAGTAATTGCTTTGG
110739066 TTCAGTAATTGCTTTGG
1 TTCAGTAATTGCTTTGG
110739083 CAACGAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.26, T:0.47
Consensus pattern (17 bp):
TTCAGTAATTGCTTTGG
Found at i:110743776 original size:10 final size:10
Alignment explanation
Indices: 110743761--110743792 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
110743751 TAAATACATT
110743761 TAATTAAAGA
1 TAATTAAAGA
110743771 TAATTAAAGA
1 TAATTAAAGA
110743781 TAATTAAA-A
1 TAATTAAAGA
110743790 TAA
1 TAA
110743793 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:110756056 original size:18 final size:19
Alignment explanation
Indices: 110756027--110756063 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
110756017 TATACAAATG
*
110756027 TAAAATAAATATTTGTTAT
1 TAAAATAAATATTTATTAT
110756046 TAAAA-AAATATTTATTAT
1 TAAAATAAATATTTATTAT
110756064 AGTTATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TAAAATAAATATTTATTAT
Found at i:110757419 original size:18 final size:18
Alignment explanation
Indices: 110757387--110757502 Score: 106
Period size: 18 Copynumber: 6.4 Consensus size: 18
110757377 TAAATAAAAG
* *
110757387 TACTGAATGACTGATTGT
1 TACTGAATAACTGATCGT
* *
110757405 TATTGAATAATTGATCGT
1 TACTGAATAACTGATCGT
110757423 TACTGAATAACTGATCGT
1 TACTGAATAACTGATCGT
* *
110757441 TACTGAATAACTGATTGC
1 TACTGAATAACTGATCGT
** * *
110757459 TACTGAGCAAATGATTGT
1 TACTGAATAACTGATCGT
* * * *
110757477 TACTAAATAACTAATTGC
1 TACTGAATAACTGATCGT
110757495 TACTGAAT
1 TACTGAAT
110757503 GATTGAATGT
Statistics
Matches: 79, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 79 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (18 bp):
TACTGAATAACTGATCGT
Found at i:110757456 original size:54 final size:54
Alignment explanation
Indices: 110757387--110757502 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
110757377 TAAATAAAAG
* * * * * * * *
110757387 TACTGAATGACTGATTGTTATTGAATAATTGATCGTTACTGAATAACTGATCGT
1 TACTGAATAACTGATTGCTACTGAACAAATGATCGTTACTAAATAACTAATCGC
* * *
110757441 TACTGAATAACTGATTGCTACTGAGCAAATGATTGTTACTAAATAACTAATTGC
1 TACTGAATAACTGATTGCTACTGAACAAATGATCGTTACTAAATAACTAATCGC
110757495 TACTGAAT
1 TACTGAAT
110757503 GATTGAATGT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (54 bp):
TACTGAATAACTGATTGCTACTGAACAAATGATCGTTACTAAATAACTAATCGC
Done.