Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 339 of 349
Found at i:112120727 original size:26 final size:26
Alignment explanation
Indices: 112120691--112120743 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
112120681 GAACGCTTGG
*
112120691 AATCAAATTCATAGAATGAAAATGTA
1 AATCAAATTCATAGAATAAAAATGTA
112120717 AATCAAATTCATAGAATAAAAATGTA
1 AATCAAATTCATAGAATAAAAATGTA
112120743 A
1 A
112120744 CACCCCTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.08, G:0.09, T:0.26
Consensus pattern (26 bp):
AATCAAATTCATAGAATAAAAATGTA
Found at i:112122931 original size:25 final size:25
Alignment explanation
Indices: 112122872--112122922 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
112122862 CCCTGCTTTG
* *
112122872 TTTCGTTT-TTCATTCTTTCTTTTA
1 TTTCTTTTATTCATTCATTCTTTTA
112122896 TTTCTTTTATTCATTCATTC-TTTA
1 TTTCTTTTATTCATTCATTCTTTTA
112122920 TTT
1 TTT
112122923 TATTATATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.12, C:0.16, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTCTTTTATTCATTCATTCTTTTA
Found at i:112136502 original size:20 final size:20
Alignment explanation
Indices: 112136477--112136525 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
112136467 AGGGGCACAC
* *
112136477 GCCCGTGTGGCTTGGGACAA
1 GCCCGTGTGGCCTGGAACAA
*
112136497 GCCCGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAA
112136517 GCCCGTGTG
1 GCCCGTGTG
112136526 CTGCAGCCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.12, C:0.29, G:0.39, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAA
Found at i:112154580 original size:27 final size:27
Alignment explanation
Indices: 112154520--112154629 Score: 98
Period size: 27 Copynumber: 4.1 Consensus size: 27
112154510 CATGGCTGCC
* * * *
112154520 AGAACAGATAA-AGTGACAGAGTCACC
1 AGAACAGATAATCGTGGCAGAGCCACT
*
112154546 AGATACAGATAATCGTGGTAGAGCCACT
1 AGA-ACAGATAATCGTGGCAGAGCCACT
* *
112154574 AGAACAGA-AATATGTGGCAGAGCCACC
1 AGAACAGATAAT-CGTGGCAGAGCCACT
** *
112154601 AGATTAGATAATCGTGGCATAGCCACT
1 AGAACAGATAATCGTGGCAGAGCCACT
112154628 AG
1 AG
112154630 GACACTTCCT
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
26 6 0.09
27 45 0.67
28 16 0.24
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (27 bp):
AGAACAGATAATCGTGGCAGAGCCACT
Found at i:112156029 original size:24 final size:24
Alignment explanation
Indices: 112155998--112156068 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
112155988 CTAGATTTCC
*
112155998 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
112156022 TCCTTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
112156046 TCCCTTATCAACCCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
112156069 CTCATGACAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:112156037 original size:48 final size:47
Alignment explanation
Indices: 112155974--112156068 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 47
112155964 CACCTCTTGT
* * * *
112155974 TCCTTGATCAGCTCCTAGATTTCC-TCCCTTATCTACTCCTAAATCCTA
1 TCCTTGATCAACTCCTA-A-ATCCATCCCTTATCAACCCCTAAATCCTA
*
112156022 TCCTTTATCAACTCCTAAATCCTATCCCTTATCAACCCCTAAATCCT
1 TCCTTGATCAACTCCTAAATCC-ATCCCTTATCAACCCCTAAATCCT
112156069 CTCATGACAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
46 3 0.08
47 1 0.03
48 36 0.90
ACGTcount: A:0.24, C:0.37, G:0.03, T:0.36
Consensus pattern (47 bp):
TCCTTGATCAACTCCTAAATCCATCCCTTATCAACCCCTAAATCCTA
Found at i:112159911 original size:13 final size:13
Alignment explanation
Indices: 112159885--112159923 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
112159875 ATTTTTGGCA
*
112159885 CCCCTGCTAGGCG
1 CCCCTGCCAGGCG
*
112159898 CCCTTGCCAGGCG
1 CCCCTGCCAGGCG
112159911 CCCCTGCCAGGCG
1 CCCCTGCCAGGCG
112159924 TTCCTCGACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.08, C:0.49, G:0.31, T:0.13
Consensus pattern (13 bp):
CCCCTGCCAGGCG
Found at i:112162364 original size:27 final size:26
Alignment explanation
Indices: 112162329--112162440 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
112162319 AGCATGGATG
* *
112162329 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
112162355 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
112162383 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
112162410 CCAGATCAGCTAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
112162437 CCAG
1 CCAG
112162441 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:112162430 original size:54 final size:54
Alignment explanation
Indices: 112162329--112162440 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
112162319 AGCATGGATG
* *
112162329 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
112162383 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGCTAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
112162437 CCAG
1 CCAG
112162441 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:112163894 original size:24 final size:24
Alignment explanation
Indices: 112163867--112163937 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
112163857 CTAGATTTCC
**
112163867 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
112163891 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
112163915 TCCCTTATCAACCCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
112163938 TTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.39, G:0.01, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:112165292 original size:13 final size:14
Alignment explanation
Indices: 112165274--112165303 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
112165264 AGTAAAACAG
112165274 ATTCTT-AATATTT
1 ATTCTTAAATATTT
112165287 ATTCTTAAATATTT
1 ATTCTTAAATATTT
112165301 ATT
1 ATT
112165304 AAAAATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTCTTAAATATTT
Found at i:112165502 original size:16 final size:17
Alignment explanation
Indices: 112165481--112165512 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
112165471 AAAAAATAAA
112165481 AGAAA-TGAAACAAAAT
1 AGAAATTGAAACAAAAT
112165497 AGAAATTGAAACAAAA
1 AGAAATTGAAACAAAA
112165513 ACAGTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.69, C:0.06, G:0.12, T:0.12
Consensus pattern (17 bp):
AGAAATTGAAACAAAAT
Found at i:112169558 original size:25 final size:25
Alignment explanation
Indices: 112169529--112169576 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
112169519 TTATAATATG
* * *
112169529 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
112169554 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
112169577 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:112169648 original size:19 final size:20
Alignment explanation
Indices: 112169620--112169677 Score: 100
Period size: 19 Copynumber: 3.0 Consensus size: 20
112169610 TAAACATGGT
112169620 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
112169640 ATG-ATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
112169659 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
112169678 TGTATTCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:112169657 original size:11 final size:11
Alignment explanation
Indices: 112169624--112169678 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
112169614 CATGGTATGT
112169624 ATGATATGCAC
1 ATGATATGCAC
*
112169635 ATGACATG---
1 ATGATATGCAC
112169643 ATGATATGCAC
1 ATGATATGCAC
*
112169654 ATGATATG--T
1 ATGATATGCAC
112169663 ATGATATGCAC
1 ATGATATGCAC
112169674 ATGAT
1 ATGAT
112169679 GTATTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 7 0.20
9 8 0.23
11 20 0.57
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:112169668 original size:20 final size:20
Alignment explanation
Indices: 112169613--112169678 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
112169603 ATTTTGATAA
*
112169613 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
112169633 ACATGACATG-ATGATATGC
1 ACATGATATGTATGATATGC
112169652 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
112169672 ACATGAT
1 ACATGAT
112169679 GTATTCATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
19 18 0.43
20 24 0.57
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:112169755 original size:24 final size:24
Alignment explanation
Indices: 112169728--112169870 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
112169718 GAGGAAGTGA
*
112169728 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
112169752 AAAAGGGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
112169776 AAAAGGGCATATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
112169800 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
112169823 AAAAAGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
112169847 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
112169871 ATGATAAAGC
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 22 0.21
24 73 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:112169825 original size:47 final size:47
Alignment explanation
Indices: 112169728--112169849 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
112169718 GAGGAAGTGA
* *
112169728 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
*
112169776 AAAAGGGCATATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
112169823 AAAAAGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
112169850 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 46 0.68
48 22 0.32
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:112169849 original size:71 final size:72
Alignment explanation
Indices: 112169729--112169870 Score: 216
Period size: 71 Copynumber: 2.0 Consensus size: 72
112169719 AGGAAGTGAA
* * *
112169729 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTGTTAAAAG-GGCATATGCC-C
1 AAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTC
112169792 CAGTTATT
65 CAGTTATT
* *
112169800 AAAGGGCTTATGCCCCAGTTATTAAAAAGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
1 AAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
112169865 AGTTAT
66 AGTTAT
112169871 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.83
72 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
AGTTATT
Found at i:112170098 original size:31 final size:31
Alignment explanation
Indices: 112170063--112170126 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
112170053 CATTTACAGT
112170063 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
112170094 AAAGGCTTCGGCCCAGTGTTATGATATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
112170125 AA
1 AA
112170127 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:112177664 original size:25 final size:25
Alignment explanation
Indices: 112177635--112177682 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
112177625 TTATAATATG
* *
112177635 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
112177660 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
112177683 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:112177754 original size:19 final size:20
Alignment explanation
Indices: 112177726--112177783 Score: 100
Period size: 19 Copynumber: 3.0 Consensus size: 20
112177716 TAAACATGGT
112177726 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
112177746 ATG-ATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
112177765 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
112177784 TGTATTCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:112177763 original size:11 final size:11
Alignment explanation
Indices: 112177730--112177784 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
112177720 CATGGTATGT
112177730 ATGATATGCAC
1 ATGATATGCAC
*
112177741 ATGACATG---
1 ATGATATGCAC
112177749 ATGATATGCAC
1 ATGATATGCAC
*
112177760 ATGATATG--T
1 ATGATATGCAC
112177769 ATGATATGCAC
1 ATGATATGCAC
112177780 ATGAT
1 ATGAT
112177785 GTATTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 7 0.20
9 8 0.23
11 20 0.57
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:112177774 original size:20 final size:20
Alignment explanation
Indices: 112177719--112177784 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
112177709 ATTTTGATAA
*
112177719 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
112177739 ACATGACATG-ATGATATGC
1 ACATGATATGTATGATATGC
112177758 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
112177778 ACATGAT
1 ACATGAT
112177785 GTATTCATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
19 18 0.43
20 24 0.57
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:112177861 original size:24 final size:24
Alignment explanation
Indices: 112177834--112177976 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
112177824 GAGGAAGTGA
*
112177834 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
112177858 AAAAGGGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
112177882 AAAAGGGCTTATGCCCCATTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
112177906 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
112177929 AAAAAGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
112177953 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
112177977 ATGATAAAGC
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 22 0.21
24 73 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:112177923 original size:47 final size:47
Alignment explanation
Indices: 112177834--112177955 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
112177824 GAGGAAGTGA
* *
112177834 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
*
112177882 AAAAGGGCTTATGCCCCATTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
112177929 AAAAAGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
112177956 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 46 0.68
48 22 0.32
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:112178223 original size:31 final size:31
Alignment explanation
Indices: 112178169--112178232 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
112178159 TATTTACAGT
*
112178169 AAAGGCTTCGGCCCATTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* ** *
112178200 AAAGGCTTCGGCCCGGTGTTATGATATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
112178231 AA
1 AA
112178233 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:112180352 original size:44 final size:45
Alignment explanation
Indices: 112180289--112180758 Score: 308
Period size: 44 Copynumber: 10.6 Consensus size: 45
112180279 GTTATTGTGG
* *
112180289 CAAATCTTATCTCTTTGAAGTTGCAATAGAGCTA-ATTAAAACAA
1 CAAATCTTATCTCCTTGAAGTTGCAGTAGAGCTAGATTAAAACAA
112180333 CAAATCTTATCTCCTTGAAGTTGCAGTAGAG-TAGATTAAAA-ATA
1 CAAATCTTATCTCCTTGAAGTTGCAGTAGAGCTAGATTAAAACA-A
* * * * * *
112180377 GAAAATCTTATCT-ATCTGAAGTTACAGTAGAGC-AAATTAAAGCCA
1 -CAAATCTTATCTCCT-TGAAGTTGCAGTAGAGCTAGATTAAAACAA
* * * * * *
112180422 TAAATCTTATCTCCCTGAAGTTGCAAT-GCAAC-AGATTGAAAATAG
1 CAAATCTTATCTCCTTGAAGTTGCAGTAG-AGCTAGATT-AAAACAA
* * *
112180467 CAAATCTTATCT-CTCTGAAGTTGCAGTAGA-ATAGATTAAAGCCA
1 CAAATCTTATCTCCT-TGAAGTTGCAGTAGAGCTAGATTAAAACAA
* * * * *
112180511 TAAATCTTATCTCCCTGAAGTTGCAAT-GCAG-TAGATTGAAAATAG
1 CAAATCTTATCTCCTTGAAGTTGCAGTAG-AGCTAGATT-AAAACAA
** * * *
112180556 CAAATCTTATCTTTTTGAAGTTGCAGTAGAAC-AGATTAAAGCTA
1 CAAATCTTATCTCCTTGAAGTTGCAGTAGAGCTAGATTAAAACAA
* **
112180600 CAAATCTTATCT-CTCTGAAGTTGCAGTAGAAC-AGATTAAAGTAA
1 CAAATCTTATCTCCT-TGAAGTTGCAGTAGAGCTAGATTAAAACAA
* * * * * * ***
112180644 CAATTCTTATCTCATTGAAGCTGCAATAGAAC-AGATTGAAGTTA
1 CAAATCTTATCTCCTTGAAGTTGCAGTAGAGCTAGATTAAAACAA
* * * * *
112180688 CAAATCTCATCTCCCTGAAGTTTCAGTAGAGC-AGATTAAAGCGA
1 CAAATCTTATCTCCTTGAAGTTGCAGTAGAGCTAGATTAAAACAA
* * *
112180732 GAAATCCTAT-GCCTCTGAAGTTGCAGT
1 CAAATCTTATCTCCT-TGAAGTTGCAGT
112180759 GGGTCGGATT
Statistics
Matches: 335, Mismatches: 70, Indels: 42
0.75 0.16 0.09
Matches are distributed among these distances:
43 8 0.02
44 227 0.68
45 98 0.29
46 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (45 bp):
CAAATCTTATCTCCTTGAAGTTGCAGTAGAGCTAGATTAAAACAA
Found at i:112180408 original size:89 final size:90
Alignment explanation
Indices: 112180288--112180709 Score: 439
Period size: 89 Copynumber: 4.8 Consensus size: 90
112180278 AGTTATTGTG
* * * * *
112180288 GCAAATCTTATCTCTTTGAAGTTGCAATAGAGCTA-ATTAAAACAACAAATCTTATCTCCTTGAA
1 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCTAGATTAAAGCCACAAATCTTATCTCCCTGAA
* **
112180352 GTTGCAGTAG-AGTAGATTAAAAATA
66 GTTGCAAT-GCAACAGATTAAAAATA
* * * * *
112180377 GAAAATCTTATCTATCTGAAGTTACAGTAGAGC-AAATTAAAGCCATAAATCTTATCTCCCTGAA
1 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCTAGATTAAAGCCACAAATCTTATCTCCCTGAA
*
112180441 GTTGCAATGCAACAGATTGAAAATA
66 GTTGCAATGCAACAGATTAAAAATA
* *
112180466 GCAAATCTTATCTCTCTGAAGTTGCAGTAGA-ATAGATTAAAGCCATAAATCTTATCTCCCTGAA
1 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCTAGATTAAAGCCACAAATCTTATCTCCCTGAA
** *
112180530 GTTGCAATGCAGTAGATTGAAAATA
66 GTTGCAATGCAACAGATTAAAAATA
* * * * *
112180555 GCAAATCTTATCTTTTTGAAGTTGCAGTAGAAC-AGATTAAAGCTACAAATCTTATCTCTCTGAA
1 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCTAGATTAAAGCCACAAATCTTATCTCCCTGAA
* *
112180619 GTTGCAGTAG-AACAGATT-AAAGTA
66 GTTGCAAT-GCAACAGATTAAAAATA
* * * * * * ** *
112180643 ACAATTCTTATCTCAT-TGAAGCTGCAATAGAAC-AGATTGAAGTTACAAATCTCATCTCCCTGA
1 GCAAATCTTATCTC-TCTGAAGTTGCAGTAGAGCTAGATTAAAGCCACAAATCTTATCTCCCTGA
112180706 AGTT
65 AGTT
112180710 TCAGTAGAGC
Statistics
Matches: 288, Mismatches: 39, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
88 63 0.22
89 224 0.78
90 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (90 bp):
GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCTAGATTAAAGCCACAAATCTTATCTCCCTGAA
GTTGCAATGCAACAGATTAAAAATA
Found at i:112180563 original size:178 final size:176
Alignment explanation
Indices: 112180288--112180727 Score: 526
Period size: 178 Copynumber: 2.5 Consensus size: 176
112180278 AGTTATTGTG
* * *
112180288 GCAAATCTTATCTCTTTGAAGTTGCAATAGAGCTA-ATTAAAACAACAAATCTTATCTCCTTGAA
1 GCAAATCTTATCTC-TTGAAGTTGCAATAGA-ATAGATTAAAGCAACAAATCTTATCTCCCTGAA
* *
112180352 GTTGCAGTAGAGTAGATTAAAAATAGAAAATCTTATCTATCTGAAGTTACAGTAGAGCAAATTAA
64 GTTGCAATAGAGTAGATTAAAAATAGAAAATCTTATCTATCTGAAGTTACAGTAGAACAAATTAA
*
112180417 AGCCATAAATCTTATCTCCCTGAAGTTGCAAT-GCAACAGATTGAAAATA
129 AGCCACAAATCTTATCTCCCTGAAGTTGCAATAG-AACAGATT-AAAATA
* * *
112180466 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAATAGATTAAAGCCATAAATCTTATCTCCCTGAAG
1 GCAAATCTTATCTCT-TGAAGTTGCAATAGAATAGATTAAAGCAACAAATCTTATCTCCCTGAAG
* * * * * *
112180531 TTGCAAT-GCAGTAGATTGAAAATAGCAAATCTTATCTTTTTGAAGTTGCAGTAGAACAGATTAA
65 TTGCAATAG-AGTAGATTAAAAATAGAAAATCTTATCTATCTGAAGTTACAGTAGAACAAATTAA
* * * *
112180595 AGCTACAAATCTTATCTCTCTGAAGTTGCAGTAGAACAGATTAAAGTA
129 AGCCACAAATCTTATCTCCCTGAAGTTGCAATAGAACAGATTAAAATA
* * * * * ** *
112180643 ACAATTCTTATCTCATTGAAGCTGCAATAGAACAGATTGAAGTTACAAATCTCATCTCCCTGAAG
1 GCAAATCTTATCTC-TTGAAGTTGCAATAGAATAGATTAAAGCAACAAATCTTATCTCCCTGAAG
* * *
112180708 TTTCAGTAGAGCAGATTAAA
65 TTGCAATAGAGTAGATTAAA
112180728 GCGAGAAATC
Statistics
Matches: 223, Mismatches: 33, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
177 76 0.34
178 146 0.65
179 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (176 bp):
GCAAATCTTATCTCTTGAAGTTGCAATAGAATAGATTAAAGCAACAAATCTTATCTCCCTGAAGT
TGCAATAGAGTAGATTAAAAATAGAAAATCTTATCTATCTGAAGTTACAGTAGAACAAATTAAAG
CCACAAATCTTATCTCCCTGAAGTTGCAATAGAACAGATTAAAATA
Found at i:112180751 original size:88 final size:87
Alignment explanation
Indices: 112180289--112180833 Score: 292
Period size: 89 Copynumber: 6.1 Consensus size: 87
112180279 GTTATTGTGG
* * * * * * *
112180289 CAAATCTTATCTCTTTGAAGTTGCAATAGAGCTA-ATTAAAACAACAAATCTTATCTCCTTGAAG
1 CAAATCCTATCTC-ATGAAGTTGCAATAGAAC-AGATTAAAGCTACAAATCTCATCTCCCTGAAG
** *
112180353 TTGCAGTAGAGTAGATTAAA-AATA
64 TTGCAGTAGAACAGATTAAAGCA-A
* * * * * * * * *
112180377 GAAAATCTTATCT-ATCTGAAGTTACAGTAGAGCAAATTAAAGCCATAAATCTTATCTCCCTGAA
1 -CAAATCCTATCTCA--TGAAGTTGCAATAGAACAGATTAAAGCTACAAATCTCATCTCCCTGAA
* ** *
112180441 GTTGCAAT-GCAACAGATTGAAAATAG
63 GTTGCAGTAG-AACAGATT-AAAGCAA
* * * * * * *
112180467 CAAATCTTATCTCTCTGAAGTTGCAGTAGAATAGATTAAAGCCATAAATCTTATCTCCCTGAAGT
1 CAAATCCTATCTC-ATGAAGTTGCAATAGAACAGATTAAAGCTACAAATCTCATCTCCCTGAAGT
* ** ** *
112180532 TGCAAT-GCAGTAGATTGAAAATAG
65 TGCAGTAG-AACAGATT-AAAGCAA
* ** * * *
112180556 CAAATCTTATCTTTTTGAAGTTGCAGTAGAACAGATTAAAGCTACAAATCTTATCTCTCTGAAGT
1 CAAATCCTATC-TCATGAAGTTGCAATAGAACAGATTAAAGCTACAAATCTCATCTCCCTGAAGT
*
112180621 TGCAGTAGAACAGATTAAAGTAA
65 TGCAGTAGAACAGATTAAAGCAA
* * * * *
112180644 CAATTCTTATCTCATTGAAGCTGCAATAGAACAGATTGAAGTTACAAATCTCATCTCCCTGAAGT
1 CAAATCCTATCTCA-TGAAGTTGCAATAGAACAGATTAAAGCTACAAATCTCATCTCCCTGAAGT
* * *
112180709 TTCAGTAGAGCAGATTAAAGCGA
65 TGCAGTAGAACAGATTAAAGCAA
* * * ** * * *
112180732 GAAATCCTATGCCTC-TGAAGTTGCAGTGGGTCGGATTAAATCAAGTCACAAATCTTATCTCCCT
1 CAAATCCTAT--CTCATGAAGTTGCAATAGAACAGATTAAAGC---T-ACAAATCTCATCTCCCT
* * ** **
112180796 GAAGTTGTAGTGGAGTAGATTGGAGCAA
60 GAAGTTGCAGTAGAACAGATTAAAGCAA
112180824 CAAATCCTAT
1 CAAATCCTAT
112180834 GCCTCTAAAG
Statistics
Matches: 373, Mismatches: 66, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
87 1 0.00
88 105 0.28
89 211 0.57
90 8 0.02
91 2 0.01
92 46 0.12
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (87 bp):
CAAATCCTATCTCATGAAGTTGCAATAGAACAGATTAAAGCTACAAATCTCATCTCCCTGAAGTT
GCAGTAGAACAGATTAAAGCAA
Found at i:112180801 original size:92 final size:92
Alignment explanation
Indices: 112180682--112180854 Score: 249
Period size: 92 Copynumber: 1.9 Consensus size: 92
112180672 GAACAGATTG
* * *
112180682 AAGTTACAAATCTCATCTCCCTGAAGTT-TCAGTAGAGCAGATTAAAGCGAGAAATCCTATGCCT
1 AAGTCACAAATCTCATCTCCCTGAAGTTGT-AGTAGAGCAGATTAAAGCAACAAATCCTATGCCT
*
112180746 CTGAAGTTGCAGTGGGTCGGATTAAATC
65 CTAAAGTTGCAGTGGGTCGGATTAAATC
* * * **
112180774 AAGTCACAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGGAGCAACAAATCCTATGCCTC
1 AAGTCACAAATCTCATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCAACAAATCCTATGCCTC
112180839 TAAAGTTGCAGTGGGT
66 TAAAGTTGCAGTGGGT
112180855 TAGAATGAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 70 0.99
93 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (92 bp):
AAGTCACAAATCTCATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCAACAAATCCTATGCCTC
TAAAGTTGCAGTGGGTCGGATTAAATC
Found at i:112183532 original size:45 final size:45
Alignment explanation
Indices: 112183468--112183557 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
112183458 GTTCGCGTTG
112183468 TTAGAATTTTACCCTCCTCTTGTAATTCAAAAAAAATTCTCTACA
1 TTAGAATTTTACCCTCCTCTTGTAATTCAAAAAAAATTCTCTACA
* * *
112183513 TTAGAATTTTACCTTCCTCTTGTAATTTAACAAAAATTCTCTACA
1 TTAGAATTTTACCCTCCTCTTGTAATTCAAAAAAAATTCTCTACA
112183558 CCTCTTCGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.40
Consensus pattern (45 bp):
TTAGAATTTTACCCTCCTCTTGTAATTCAAAAAAAATTCTCTACA
Found at i:112184453 original size:40 final size:39
Alignment explanation
Indices: 112184377--112184471 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
112184367 TCATCTCTAT
* * *
112184377 CCAACCCAACACACC-ATGTGGGGATAGAATCGACCCAC
1 CCAACCCTACACACCAATATGGGGATAGAATCAACCCAC
** *
112184415 CCAACCCTACACACCAAGTATGGGGATTTAATCAACCCAT
1 CCAACCCTACACACCAA-TATGGGGATAGAATCAACCCAC
*
112184455 CCAACCCTATACACCAA
1 CCAACCCTACACACCAA
112184472 CTGGTACCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 14 0.29
39 1 0.02
40 33 0.69
ACGTcount: A:0.36, C:0.37, G:0.13, T:0.15
Consensus pattern (39 bp):
CCAACCCTACACACCAATATGGGGATAGAATCAACCCAC
Found at i:112184953 original size:17 final size:17
Alignment explanation
Indices: 112184931--112184967 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
112184921 ATGTAGGCCT
*
112184931 ACATGCCCGTGTAGCCC
1 ACATGCCCGTATAGCCC
*
112184948 ACATGCCCGTATGGCCC
1 ACATGCCCGTATAGCCC
112184965 ACA
1 ACA
112184968 CGACCCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.41, G:0.22, T:0.16
Consensus pattern (17 bp):
ACATGCCCGTATAGCCC
Found at i:112189928 original size:22 final size:22
Alignment explanation
Indices: 112189903--112189946 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
112189893 GCATTAGTTA
*
112189903 ACCCAAAGGGCATAACTCTGCC
1 ACCCAAAGGGCATAACTATGCC
112189925 ACCCAAAGGGCATAACTATGCC
1 ACCCAAAGGGCATAACTATGCC
112189947 CATAACGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.18, T:0.14
Consensus pattern (22 bp):
ACCCAAAGGGCATAACTATGCC
Found at i:112197018 original size:23 final size:25
Alignment explanation
Indices: 112196974--112197019 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
112196964 TATTTCATTG
112196974 TATTTTTATTTTTAGAAATTTAATA
1 TATTTTTATTTTTAGAAATTTAATA
*
112196999 TATTTTT-TTTTTA-AATTTTAA
1 TATTTTTATTTTTAGAAATTTAA
112197020 AAATTAGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (25 bp):
TATTTTTATTTTTAGAAATTTAATA
Found at i:112202604 original size:131 final size:130
Alignment explanation
Indices: 112202343--112202622 Score: 346
Period size: 131 Copynumber: 2.1 Consensus size: 130
112202333 TTGCCTTAAT
* * * * * * *
112202343 TTTAAAGGATTTTTTAGAAAACATGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAAC
1 TTTAAAGGA-TTTTTA-AAAACATGAGTGAAATTCTAAACGAAAATTCGATTACTTTAAGCAAAC
* * * * * * *
112202408 GAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATAATGCACATCGCCTT
64 GAGAAATTGCAACCCAACACGTTAAGGCACGATTCCACAAATTACCAAATAATGAACATCACCTT
112202473 CG
129 CG
* *
112202475 TTTAAGGGATTTTTAAAAGACATGAGTGAAATTCTAAACGAAAATTCGATTACTTTGAGCAAACG
1 TTTAAAGGATTTTTAAAA-ACATGAGTGAAATTCTAAACGAAAATTCGATTACTTTAAGCAAACG
* *
112202540 AGAAATTGCAACCCAACACGTTAAGGCACGATTCCACAAATTACCAAGT-ATCGAATATCACCTT
65 AGAAATTGCAACCCAACACGTTAAGGCACGATTCCACAAATTACCAAATAAT-GAACATCACCTT
112202604 CG
129 CG
112202606 TTTCAAAGGATTTTTAA
1 TTT-AAAGGATTTTTAA
112202623 TAGTTGTGAA
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
130 5 0.04
131 101 0.80
132 20 0.16
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (130 bp):
TTTAAAGGATTTTTAAAAACATGAGTGAAATTCTAAACGAAAATTCGATTACTTTAAGCAAACGA
GAAATTGCAACCCAACACGTTAAGGCACGATTCCACAAATTACCAAATAATGAACATCACCTTCG
Found at i:112204282 original size:6 final size:6
Alignment explanation
Indices: 112204273--112204306 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
112204263 AATGAATCAT
112204273 AAAATGA AAAATA AAAATA AAAATA AAAATA AAA
1 AAAAT-A AAAATA AAAATA AAAATA AAAATA AAA
112204307 GAGACTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:112205564 original size:20 final size:19
Alignment explanation
Indices: 112205541--112205583 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
112205531 ACTATTGATA
112205541 TTTGGATTTTTATATTATTT-
1 TTTGG-TTTTTAT-TTATTTC
112205561 TTT-GTTTTTATTTATTTC
1 TTTGGTTTTTATTTATTTC
112205579 TTTGG
1 TTTGG
112205584 GCCCGGGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 6 0.29
18 10 0.48
19 2 0.10
20 3 0.14
ACGTcount: A:0.14, C:0.02, G:0.12, T:0.72
Consensus pattern (19 bp):
TTTGGTTTTTATTTATTTC
Found at i:112205570 original size:18 final size:18
Alignment explanation
Indices: 112205547--112205582 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
112205537 GATATTTGGA
112205547 TTTTTATATTATTT-TTTG
1 TTTTTAT-TTATTTCTTTG
112205565 TTTTTATTTATTTCTTTG
1 TTTTTATTTATTTCTTTG
112205583 GGCCCGGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.78
Consensus pattern (18 bp):
TTTTTATTTATTTCTTTG
Found at i:112206273 original size:132 final size:132
Alignment explanation
Indices: 112205911--112206343 Score: 489
Period size: 132 Copynumber: 3.3 Consensus size: 132
112205901 TATTTTCTTC
* * * * * *
112205911 GATCTGCTCGACTGCAACTTCAGGGAAACAAGATCTGCAATTTTAACCTATTCCACTACAACTTT
1 GATCTGCTCCACTACAACTTCAGGGAAACAAGATCTACAATTTCAGCCTACTCCACTACAACTTT
* ** * * * ** *
112205976 AGGGAACTAGTTTGGTGGCGTAAATCTACTTCACTGTAACTTCAGAAAGATTAGATTTGCCATC-
66 AGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGACAAGATTCGCCA-CG
* *
112206040 ATC
130 TTT
* *
112206043 GATCCGCTCCACTACAATTTCAGGGAAACGAA-ATCTACAATCTTCAGCCTACTCCACTACAACT
1 GATCTGCTCCACTACAACTTCAGGGAAAC-AAGATCTACAAT-TTCAGCCTACTCCACTACAACT
* * * * *
112206107 TTAGAGAGCTAGGATGGTGGCTCAAATCTGCTTCACTGCCACTTCAGGAAGCCAAGATTCGCCAC
64 TTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGACAAGATTCGCCAC
112206172 GTTT
129 GTTT
* *
112206176 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATTTCAGCCTACTCCACTACAACTTT
1 GATCTGCTCCACTACAACTTCAGGGAAACAAGATCTACAATTTCAGCCTACTCCACTACAACTTT
* * * *
112206241 AGGGAGCTGGGATGGTGGCTTAAATCTACTTCACTACAACTTTAGGAAGACAAGATTCG-C-TGT
66 AGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGACAAGATTCGCCACGT
112206304 TGT
131 T-T
* *
112206307 CGATCTGCTCCACTGCAATTTCA-GGAAGACAAGATCT
1 -GATCTGCTCCACTACAACTTCAGGGAA-ACAAGATCT
112206344 GTAGAATTTT
Statistics
Matches: 253, Mismatches: 41, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
130 3 0.01
131 5 0.02
132 139 0.55
133 106 0.42
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (132 bp):
GATCTGCTCCACTACAACTTCAGGGAAACAAGATCTACAATTTCAGCCTACTCCACTACAACTTT
AGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGACAAGATTCGCCACGT
TT
Found at i:112206514 original size:64 final size:64
Alignment explanation
Indices: 112206413--112206533 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 64
112206403 CCTGTATCTA
**
112206413 TGTTTATGCCAAATAATTAGGGTGCCATGATCAAAATGAATCAAGTG-TCCCTAACTAGATGTGG
1 TGTTTATGCCAAATAATTAGAATGCCATGATCAAAATGAATCAAGTGCT-CCTAACTAGATGTGG
* * *
112206477 TGTTTATGTCAAATAATTAGAATGCTATGATCGAAATGAATCAAGTGCTCCTAACTA
1 TGTTTATGCCAAATAATTAGAATGCCATGATCAAAATGAATCAAGTGCTCCTAACTA
112206534 AATGAATGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
64 50 0.98
65 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (64 bp):
TGTTTATGCCAAATAATTAGAATGCCATGATCAAAATGAATCAAGTGCTCCTAACTAGATGTGG
Found at i:112211827 original size:19 final size:18
Alignment explanation
Indices: 112211786--112211832 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
112211776 AATGTGCCTT
* *
112211786 TAAAACAAAAATGAATCA
1 TAAAATAAAAATGAATAA
112211804 TAAAATGAAAAATGAA-AA
1 TAAAAT-AAAAATGAATAA
112211822 TAAAAATAAAA
1 T-AAAATAAAA
112211833 GAGACTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.17
Consensus pattern (18 bp):
TAAAATAAAAATGAATAA
Found at i:112220440 original size:14 final size:14
Alignment explanation
Indices: 112220421--112220447 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
112220411 AAAAATAACT
112220421 TAATTAATCTGATG
1 TAATTAATCTGATG
112220435 TAATTAATCTGAT
1 TAATTAATCTGAT
112220448 TCTAAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.44
Consensus pattern (14 bp):
TAATTAATCTGATG
Found at i:112221349 original size:12 final size:13
Alignment explanation
Indices: 112221332--112221360 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
112221322 AAAATCAAGT
112221332 AATTTTTT-ATCA
1 AATTTTTTCATCA
112221344 AATTTTTTCATCA
1 AATTTTTTCATCA
112221357 AATT
1 AATT
112221361 AAGCCTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.55
Consensus pattern (13 bp):
AATTTTTTCATCA
Found at i:112224998 original size:104 final size:104
Alignment explanation
Indices: 112224818--112225041 Score: 351
Period size: 104 Copynumber: 2.2 Consensus size: 104
112224808 TGTATATAAA
** * * *
112224818 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGTGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
*
112224883 TGAAATGTGAAAGGGGGTTGTTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
112224922 AGGGGTTGTTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
112224986 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
112225026 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
112225042 GATATCCATT
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
104 108 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.33
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:112225093 original size:71 final size:72
Alignment explanation
Indices: 112224960--112225111 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
112224950 TCATTGGTGG
* *
112224960 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
112225025 GAGGGGT
66 GAGGGGT
***
112225032 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
112225096 GAGGGGT
66 GAGGGGT
112225103 TGCTAAGTG
1 TGCTAAGTG
112225112 ATGATTCCCG
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:112237221 original size:39 final size:39
Alignment explanation
Indices: 112237087--112237212 Score: 225
Period size: 39 Copynumber: 3.2 Consensus size: 39
112237077 GACTTAATGT
* *
112237087 CTAGCAGGTCTCGTGTCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
112237126 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
*
112237165 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGATTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
112237204 CTAGCAGGC
1 CTAGCAGGC
112237213 TAATTGCCGT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:112237523 original size:18 final size:18
Alignment explanation
Indices: 112237500--112237538 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
112237490 TAAAGTCGAA
112237500 TCAAAGAATTACTTTGAG
1 TCAAAGAATTACTTTGAG
112237518 TCAAAGAATTACTTTGAG
1 TCAAAGAATTACTTTGAG
112237536 TCA
1 TCA
112237539 TTTAGATGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (18 bp):
TCAAAGAATTACTTTGAG
Found at i:112251027 original size:15 final size:16
Alignment explanation
Indices: 112251002--112251031 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
112250992 CCCTTCATGT
112251002 TGCTATATGCGAACCA
1 TGCTATATGCGAACCA
112251018 TGCT-TATGCGAACC
1 TGCTATATGCGAACC
112251032 TTTTGTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (16 bp):
TGCTATATGCGAACCA
Found at i:112251338 original size:22 final size:22
Alignment explanation
Indices: 112251284--112251340 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
112251274 AGTCAGAATA
*
112251284 TTACATGCGAACCCTAATTGTT
1 TTACATGCGAACCCTAATTGAT
112251306 TATGACATGCGAACCCT-ATGTGAT
1 T-T-ACATGCGAACCCTAAT-TGAT
112251330 TTACATGCGAA
1 TTACATGCGAA
112251341 ACTCTAGGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
22 10 0.32
23 4 0.13
24 17 0.55
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (22 bp):
TTACATGCGAACCCTAATTGAT
Found at i:112252879 original size:16 final size:18
Alignment explanation
Indices: 112252858--112252900 Score: 63
Period size: 16 Copynumber: 2.4 Consensus size: 18
112252848 ATATTATGTA
112252858 TACTATTA-TAT-TTTAT
1 TACTATTATTATATTTAT
112252874 TACTATTATTATATTTAT
1 TACTATTATTATATTTAT
112252892 TATCTATTA
1 TA-CTATTA
112252901 GCATTAGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.33
17 3 0.12
18 7 0.29
19 6 0.25
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (18 bp):
TACTATTATTATATTTAT
Found at i:112252883 original size:19 final size:19
Alignment explanation
Indices: 112252861--112252900 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
112252851 TTATGTATAC
112252861 TATTATATTTTATTA-CTAT
1 TATTATA-TTTATTATCTAT
112252880 TATTATATTTATTATCTAT
1 TATTATATTTATTATCTAT
112252899 TA
1 TA
112252901 GCATTAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTATATTTATTATCTAT
Found at i:112253023 original size:27 final size:27
Alignment explanation
Indices: 112252992--112253101 Score: 78
Period size: 27 Copynumber: 4.4 Consensus size: 27
112252982 ATTATTTTTC
112252992 TTAATATTATATTATGTATATATTCTT
1 TTAATATTATATTATGTATATATTCTT
112253019 TT-A-A-TATATTA-G-ATATA-T-TT
1 TTAATATTATATTATGTATATATTCTT
* * *
112253039 TAAAT-TCTATATTACGTATATATATATT
1 TTAATAT-TATATTATGTATATAT-TCTT
* *
112253067 TT-ATACTATATTATGTATACATTC-T
1 TTAATATTATATTATGTATATATTCTT
*
112253092 TAAATATTAT
1 TTAATATTAT
112253102 TACTTATATA
Statistics
Matches: 64, Mismatches: 8, Indels: 23
0.67 0.08 0.24
Matches are distributed among these distances:
20 3 0.05
21 2 0.03
22 5 0.08
23 8 0.12
24 8 0.12
25 8 0.12
26 8 0.12
27 19 0.30
28 3 0.05
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.54
Consensus pattern (27 bp):
TTAATATTATATTATGTATATATTCTT
Found at i:112253058 original size:47 final size:51
Alignment explanation
Indices: 112252989--112253113 Score: 129
Period size: 47 Copynumber: 2.5 Consensus size: 51
112252979 ATTATTATTT
* * *
112252989 TTCTT-AATATTATATTATGTATATATTCTTTTA-A-TATATTA-G-ATATA
1 TTCTTAAATA-TATATTACGTATATATTATTTTATACTATATTATGTATACA
*
112253036 TT-TTAAATTCTATATTACGTATATATATATTTTATACTATATTATGTATACA
1 TTCTTAAA-TATATATTACGTATATAT-TATTTTATACTATATTATGTATACA
*
112253088 TTCTTAAATAT-TATTACTTATATATT
1 TTCTTAAATATATATTACGTATATATT
112253114 TTTGTATTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
46 2 0.03
47 19 0.30
48 7 0.11
49 1 0.02
50 8 0.12
51 14 0.22
52 8 0.12
53 5 0.08
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.54
Consensus pattern (51 bp):
TTCTTAAATATATATTACGTATATATTATTTTATACTATATTATGTATACA
Found at i:112253466 original size:15 final size:13
Alignment explanation
Indices: 112253439--112253491 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
112253429 ATTATGTTTT
112253439 TTTTAATACTATA
1 TTTTAATACTATA
112253452 TTTTAATACTATA
1 TTTTAATACTATA
* *
112253465 TATT-GTA-TATA
1 TTTTAATACTATA
112253476 TTTTAATAACTATA
1 TTTTAAT-ACTATA
112253490 TT
1 TT
112253492 ATGTATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
11 7 0.21
12 3 0.09
13 17 0.52
14 6 0.18
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.55
Consensus pattern (13 bp):
TTTTAATACTATA
Found at i:112253502 original size:11 final size:11
Alignment explanation
Indices: 112253486--112253564 Score: 58
Period size: 11 Copynumber: 7.5 Consensus size: 11
112253476 TTTTAATAAC
112253486 TATATTATGTA
1 TATATTATGTA
* *
112253497 TATATTTTATA
1 TATATTATGTA
*
112253508 TATATCATGTA
1 TATATTATGTA
112253519 TATA-TAT-T-
1 TATATTATGTA
* *
112253527 TTTAATAT-TA
1 TATATTATGTA
* * *
112253537 TATTTTTTATA
1 TATATTATGTA
112253548 TATATTATGTA
1 TATATTATGTA
112253559 TATATT
1 TATATT
112253565 TCTAATATCA
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
8 3 0.06
9 5 0.10
10 6 0.12
11 37 0.73
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (11 bp):
TATATTATGTA
Found at i:112253511 original size:13 final size:13
Alignment explanation
Indices: 112253470--112253563 Score: 72
Period size: 13 Copynumber: 7.4 Consensus size: 13
112253460 CTATATATTG
112253470 TATATATTTTA-A
1 TATATATTTTATA
* *
112253482 TA-ACTATATTATG
1 TATA-TATTTTATA
112253495 TATATATTTTATA
1 TATATATTTTATA
*
112253508 TATATCA-TGTATA
1 TATAT-ATTTTATA
112253521 TATAT-TTTTA-A
1 TATATATTTTATA
*
112253532 TATTATATTTTTTA
1 TA-TATATTTTATA
* *
112253546 TATATATTATGTA
1 TATATATTTTATA
112253559 TATAT
1 TATAT
112253564 TTCTAATATC
Statistics
Matches: 65, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
11 4 0.06
12 14 0.22
13 42 0.65
14 5 0.08
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.57
Consensus pattern (13 bp):
TATATATTTTATA
Found at i:112253523 original size:49 final size:47
Alignment explanation
Indices: 112253448--112253564 Score: 128
Period size: 49 Copynumber: 2.4 Consensus size: 47
112253438 TTTTTAATAC
*
112253448 TATATTTTAATACTATATATTGTATATA-TTTTAATAACTATATTATGTA
1 TATATTTT-ATA-TATATATTATATATATTTTTAAT-ACTATATTATGTA
* * *
112253497 TATATTTTATATATATCATGTATATATATTTTTAATATTATATTTTTTA
1 TATATTTTATATATAT-AT-TATATATATTTTTAATACTATATTATGTA
* *
112253546 TATATATTATGTATATATT
1 TATATTTTATATATATATT
112253565 TCTAATATCA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
47 6 0.10
48 7 0.12
49 39 0.66
50 7 0.12
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (47 bp):
TATATTTTATATATATATTATATATATTTTTAATACTATATTATGTA
Found at i:112253540 original size:14 final size:13
Alignment explanation
Indices: 112253518--112253553 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
112253508 TATATCATGT
112253518 ATATATATTTTTA
1 ATATATATTTTTA
*
112253531 ATATTATATTTTTT
1 ATA-TATATTTTTA
112253545 ATATATATT
1 ATATATATT
112253554 ATGTATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATATATATTTTTA
Found at i:112253560 original size:9 final size:9
Alignment explanation
Indices: 112253461--112253561 Score: 54
Period size: 9 Copynumber: 11.8 Consensus size: 9
112253451 ATTTTAATAC
*
112253461 TATATATTG
1 TATATATTA
*
112253470 TATATATTT
1 TATATATTA
*
112253479 TA-ATAACTA
1 TATAT-ATTA
112253488 TAT-TATGTA
1 TATATAT-TA
*
112253497 TATATTTTA
1 TATATATTA
*
112253506 TATATATCA
1 TATATATTA
*
112253515 TGTATA-TA
1 TATATATTA
112253523 TAT-T-TT-
1 TATATATTA
112253529 TA-ATATTA
1 TATATATTA
* *
112253537 TATTTTTTA
1 TATATATTA
112253546 TATATATTA
1 TATATATTA
*
112253555 TGTATAT
1 TATATAT
112253562 ATTTCTAATA
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
6 3 0.04
7 4 0.06
8 8 0.12
9 51 0.75
10 2 0.03
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (9 bp):
TATATATTA
Found at i:112253564 original size:38 final size:39
Alignment explanation
Indices: 112253495--112253572 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
112253485 CTATATTATG
*
112253495 TATATATTTTATATATATCATGTATATATATTTTTAATAT
1 TATATATTTTATATATATCATG-ATATATATTTCTAATAT
* *
112253535 TATATTTTTTATATATATTATG-TATATATTTCTAATAT
1 TATATATTTTATATATATCATGATATATATTTCTAATAT
112253573 CACGTTATTC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 15 0.43
40 20 0.57
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (39 bp):
TATATATTTTATATATATCATGATATATATTTCTAATAT
Found at i:112253591 original size:87 final size:87
Alignment explanation
Indices: 112253438--112253628 Score: 196
Period size: 87 Copynumber: 2.2 Consensus size: 87
112253428 TATTATGTTT
* *
112253438 TTTTTAATACTATATTTTAATACTATATATTGTATATATTTTAATAACTATATTATGTATATATT
1 TTTTTAATACTATATTTTAATACTATATATTGTATATATTTTAATAACTACATTATGTATACATT
112253503 TTATATATATCATGTATATATA
66 TTATATATATCATGTATATATA
* * * *
112253525 TTTTTAATATTATATTTT-TTA-TATATATTATGTATATATTTCTAATATC-ACGTTAT-TCATA
1 TTTTTAATACTATATTTTAATACTATATA-T-TGTATATATTT-TAATAACTACATTATGT-ATA
*
112253586 CATTTTTTATATTATCCCATGTA-A-ATA
62 CATTTTATATA-TAT--CATGTATATATA
* *
112253613 CTTTCAATACTATATT
1 TTTTTAATACTATATT
112253629 ATGCATATAT
Statistics
Matches: 87, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
85 6 0.07
86 4 0.05
87 45 0.52
88 25 0.29
89 1 0.01
90 6 0.07
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (87 bp):
TTTTTAATACTATATTTTAATACTATATATTGTATATATTTTAATAACTACATTATGTATACATT
TTATATATATCATGTATATATA
Found at i:112266192 original size:164 final size:160
Alignment explanation
Indices: 112265912--112266229 Score: 460
Period size: 164 Copynumber: 2.0 Consensus size: 160
112265902 TTTCTGTTTC
* *
112265912 AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACACATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
*
112265977 AGTTTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGACAC
66 AGTTTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACAC
*
112266042 GTTGAGGTATTTTCAATTTCTGTTATTCAA
131 GCTGAGGTATTTTCAATTTCTGTTATTCAA
* * *
112266072 AAAAATCAAGCACATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAG
1 AAAAATCAA-CACATATTGCGAGAAGTGAGTTGAGCCTCAAG---ACATGCTGAGGTATTTTCAA
* * *
112266136 TTTCTGTTTTTCAATTTCTGTTCGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
62 TTTCAGTTTTTCAATTTATGTT--TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCA
* *
112266200 GGACACGCTGATGTATTTTCAATTTTTGTT
125 GGACACGCTGAGGTATTTTCAATTTCTGTT
112266230 TTTTAATTTA
Statistics
Matches: 140, Mismatches: 12, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
160 10 0.07
161 26 0.19
163 39 0.28
164 63 0.45
165 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (160 bp):
AAAAATCAACACATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
AGTTTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACAC
GCTGAGGTATTTTCAATTTCTGTTATTCAA
Found at i:112266273 original size:85 final size:85
Alignment explanation
Indices: 112266072--112266315 Score: 332
Period size: 85 Copynumber: 2.8 Consensus size: 85
112266062 TGTTATTCAA
* * *
112266072 AAAAATCAAGCACATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAGT
1 AAAAATCAA-CTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTCAAT
* *
112266137 TTCTGTTTTTCAATTTCTGTTCGTC
62 TTTTGTTTTTCAATTTATGTTC-TC
*
112266162 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGATGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTCAATTTT
*
112266226 TGTTTTTTAATTTATGTT-TC
65 TGTTTTTCAATTTATGTTCTC
*
112266246 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCTATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTCAATTTT
112266311 T-TTTT
65 TGTTTT
112266316 AAATCAAGCT
Statistics
Matches: 142, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
84 6 0.04
85 62 0.44
86 36 0.25
88 28 0.20
89 10 0.07
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAATTTTT
GTTTTTCAATTTATGTTCTC
Found at i:112267956 original size:16 final size:16
Alignment explanation
Indices: 112267935--112267971 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
112267925 TTATGTATAG
*
112267935 TATTATATATATTTTT
1 TATTATATATATTATT
*
112267951 TATTATATTTATTATT
1 TATTATATATATTATT
112267967 TATTA
1 TATTA
112267972 GCATTAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTATATATATTATT
Found at i:112268214 original size:73 final size:72
Alignment explanation
Indices: 112268057--112268216 Score: 175
Period size: 73 Copynumber: 2.2 Consensus size: 72
112268047 ATTATTTTTC
* * * * *
112268057 TTAATATTATACTATGTATATATTCTTTTAATATATTAGGTATATTTTAAATTCTATATTATGTA
1 TTAATATTATATTATGTATACATTCTTTAAATATATTAGGTATATATT--ATTCTATATTATATA
112268122 TATATATAT
64 TATATATAT
* *
112268131 TT-ATACTATATTATGTATACATTC-TTAAATATTATTAGTTATATATT-TT-TATATTATCATA
1 TTAATATTATATTATGTATACATTCTTTAAATA-TATTAGGTATATATTATTCTATATTAT-ATA
112268192 TATATATAT
64 TATATATAT
112268201 GTCTAATATTATATTA
1 -T-TAATATTATATTA
112268217 CATATATACT
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
69 8 0.11
70 13 0.18
71 1 0.01
72 7 0.10
73 42 0.58
74 2 0.03
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.54
Consensus pattern (72 bp):
TTAATATTATATTATGTATACATTCTTTAAATATATTAGGTATATATTATTCTATATTATATATA
TATATAT
Found at i:112268332 original size:17 final size:16
Alignment explanation
Indices: 112268310--112268348 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
112268300 TAATACTATG
112268310 TATATATGTTGT-CAATA
1 TATATATGTT-TAC-ATA
112268327 TATATATGTTTACATA
1 TATATATGTTTACATA
112268343 TATATA
1 TATATA
112268349 GCGTTACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (16 bp):
TATATATGTTTACATA
Found at i:112268334 original size:25 final size:24
Alignment explanation
Indices: 112268270--112268335 Score: 64
Period size: 27 Copynumber: 2.7 Consensus size: 24
112268260 ACAGTTTTTC
112268270 TTAAATAT-TATAT-TATATATAT
1 TTAAATATATATATGTATATATAT
*
112268292 TTAAATACTAATACTATGTATATATGT
1 TTAAATA-T-ATA-TATGTATATATAT
*
112268319 TGTCAATATATATATGT
1 T-TAAATATATATATGT
112268336 TTACATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
22 7 0.19
23 1 0.03
25 7 0.19
26 6 0.17
27 10 0.28
28 5 0.14
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.48
Consensus pattern (24 bp):
TTAAATATATATATGTATATATAT
Found at i:112268514 original size:24 final size:24
Alignment explanation
Indices: 112268478--112268582 Score: 92
Period size: 24 Copynumber: 4.3 Consensus size: 24
112268468 TTTTTAATAC
112268478 TATAT-TTTTAATACTATA-TATTG
1 TATATATTTTAATACTATATTA-TG
112268501 TATATATTTTAATAACTATATTATG
1 TATATATTTTAAT-ACTATATTATG
* *
112268526 TATATATTATATATA-TATATCATG
1 TATATATTTTA-ATACTATATTATG
* *
112268550 TATATATATTTTTAATATTATATT-TT
1 --TATATA-TTTTAATACTATATTATG
112268576 TATATAT
1 TATATAT
112268583 ATTATGTATA
Statistics
Matches: 69, Mismatches: 5, Indels: 16
0.77 0.06 0.18
Matches are distributed among these distances:
23 6 0.09
24 21 0.30
25 19 0.28
26 14 0.20
27 9 0.13
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (24 bp):
TATATATTTTAATACTATATTATG
Found at i:112268522 original size:14 final size:13
Alignment explanation
Indices: 112268469--112268522 Score: 58
Period size: 14 Copynumber: 4.2 Consensus size: 13
112268459 TAGTATTATT
112268469 TTTTAATACTATA
1 TTTTAATACTATA
112268482 TTTTTAATACTATA
1 -TTTTAATACTATA
* *
112268496 TATT-GTA-TATA
1 TTTTAATACTATA
112268507 TTTTAATAACTATA
1 TTTTAAT-ACTATA
112268521 TT
1 TT
112268523 ATGTATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 7 0.21
12 3 0.09
13 4 0.12
14 19 0.58
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.56
Consensus pattern (13 bp):
TTTTAATACTATA
Found at i:112268533 original size:11 final size:11
Alignment explanation
Indices: 112268517--112268596 Score: 62
Period size: 11 Copynumber: 7.5 Consensus size: 11
112268507 TTTTAATAAC
112268517 TATATTATGTA
1 TATATTATGTA
*
112268528 TATATTATATA
1 TATATTATGTA
112268539 TATATATCATGTA
1 TATAT-T-ATGTA
112268552 TATA-TAT-T-
1 TATATTATGTA
* *
112268560 TTTAATAT-TA
1 TATATTATGTA
* *
112268570 TAT-TTTTATA
1 TATATTATGTA
112268580 TATATTATGTA
1 TATATTATGTA
112268591 TATATT
1 TATATT
112268597 TCTAATATCA
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
8 3 0.05
9 7 0.13
10 9 0.16
11 27 0.49
12 1 0.02
13 8 0.15
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (11 bp):
TATATTATGTA
Found at i:112268538 original size:2 final size:2
Alignment explanation
Indices: 112268517--112268595 Score: 51
Period size: 2 Copynumber: 41.5 Consensus size: 2
112268507 TTTTAATAAC
* *
112268517 TA TA T- TA TG TA TA TA T- TA TA TA TA TA TA TCA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
* * * * *
112268558 TT TT TA -A TA T- TA TA TT TT TA TA TA TA T- TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
112268596 TTCTAATATC
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
1 5 0.08
2 54 0.89
3 2 0.03
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (2 bp):
TA
Found at i:112268544 original size:13 final size:13
Alignment explanation
Indices: 112268517--112268595 Score: 76
Period size: 13 Copynumber: 6.2 Consensus size: 13
112268507 TTTTAATAAC
112268517 TATATTATG--TA
1 TATATTATGTATA
*
112268528 TATATTATATATA
1 TATATTATGTATA
*
112268541 TATATCATGTATA
1 TATATTATGTATA
*
112268554 TATATT-TTTAATA
1 TATATTATGT-ATA
*
112268567 TTATATT-TTTATA
1 -TATATTATGTATA
112268580 TATATTATGTATA
1 TATATTATGTATA
112268593 TAT
1 TAT
112268596 TTCTAATATC
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
11 8 0.14
12 8 0.14
13 32 0.56
14 9 0.16
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (13 bp):
TATATTATGTATA
Found at i:112268573 original size:14 final size:12
Alignment explanation
Indices: 112268468--112268595 Score: 62
Period size: 13 Copynumber: 9.9 Consensus size: 12
112268458 TTAGTATTAT
112268468 TTTTTAATACTATA
1 TTTTT-ATA-TATA
112268482 TTTTTA-ATACTA
1 TTTTTATATA-TA
* *
112268494 TATATTGTATATA
1 T-TTTTATATATA
*
112268507 TTTTAATAACTATA
1 TTTTTAT-A-TATA
*
112268521 TTATGTATATAT-
1 TT-TTTATATATA
* *
112268533 TATATATATATA
1 TTTTTATATATA
* *
112268545 TCATGTATATATA
1 T-TTTTATATATA
112268558 TTTTTAATATTATA
1 TTTTT-ATA-TATA
112268572 TTTTTATATATA
1 TTTTTATATATA
*
112268584 TTATGTATATAT
1 TT-TTTATATAT
112268596 TTCTAATATC
Statistics
Matches: 90, Mismatches: 13, Indels: 23
0.71 0.10 0.18
Matches are distributed among these distances:
11 10 0.11
12 17 0.19
13 36 0.40
14 24 0.27
15 3 0.03
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (12 bp):
TTTTTATATATA
Found at i:112270738 original size:22 final size:21
Alignment explanation
Indices: 112270684--112270739 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
112270674 TTAAAAATAA
* *
112270684 AATAATAAAATATATTATTTT
1 AATAATTAAATTTATTATTTT
* *
112270705 -ATATTTATATTTATATATTTT
1 AATAATTAAATTTAT-TATTTT
112270726 AATAATTAAATTTA
1 AATAATTAAATTTA
112270740 ATCCAGTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 10 0.37
21 6 0.22
22 11 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AATAATTAAATTTATTATTTT
Found at i:112271421 original size:19 final size:19
Alignment explanation
Indices: 112271396--112271450 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
112271386 GCATTTCATT
112271396 AAATTTTTTATAATTTTAA
1 AAATTTTTTATAATTTTAA
* *
112271415 TAA-TTTTTA-ATTTTTAA
1 AAATTTTTTATAATTTTAA
112271432 AAATATTTTTATAACTTTT
1 AAAT-TTTTTATAA-TTTT
112271451 TTTGAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
17 9 0.32
18 6 0.21
19 8 0.29
20 1 0.04
21 4 0.14
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
AAATTTTTTATAATTTTAA
Found at i:112274283 original size:50 final size:51
Alignment explanation
Indices: 112274206--112274326 Score: 181
Period size: 50 Copynumber: 2.4 Consensus size: 51
112274196 GACCATGGCA
* * *
112274206 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAAGACAAATG
*
112274257 A-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAAGACAAATG
* *
112274307 ACAAGTGAAAAGTGGTAGCT
1 ACAAGTGATAAGTGATAGCT
112274327 CCGGCTACCT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 46 0.73
51 17 0.27
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAAGACAAATG
Found at i:112274348 original size:31 final size:31
Alignment explanation
Indices: 112274310--112274396 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
112274300 ACAAATGACA
*
112274310 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTAATC
* *
112274341 AGTGAAAAATGGTAACTCCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTAATC
* *
112274372 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
112274397 AAGTGACAAG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTAATC
Found at i:112274566 original size:49 final size:48
Alignment explanation
Indices: 112274496--112274594 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 48
112274486 GCATCAGTGA
112274496 GATATGTGATTCGTGTAAGACCATAGCTGCGCTATGGCATCGA-TATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGCGCTATGGCATC-ATTATGT
112274544 GATATGTGATTACGTGTAAGACCATAGCTGCGCTATGGCATCATTATGT
1 GATATGTGATT-CGTGTAAGACCATAGCTGCGCTATGGCATCATTATGT
112274593 GA
1 GA
112274595 AGATGTGTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
48 12 0.24
49 37 0.76
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGCGCTATGGCATCATTATGT
Found at i:112276518 original size:26 final size:25
Alignment explanation
Indices: 112276472--112276542 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 25
112276462 GATAACACGT
*
112276472 AATATTTTTAAATTTATATTAATTA
1 AATATATTTAAATTTATATTAATTA
*
112276497 AATATATTTATAA-TTATGATTAA-TC
1 AATATATTTA-AATTTAT-ATTAATTA
112276522 AA-A-ATTT-AATTTATA-TAATTA
1 AATATATTTAAATTTATATTAATTA
112276543 TCTAAAATAG
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
20 3 0.08
21 4 0.10
22 4 0.10
23 4 0.10
24 1 0.03
25 16 0.41
26 7 0.18
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (25 bp):
AATATATTTAAATTTATATTAATTA
Found at i:112280545 original size:7 final size:8
Alignment explanation
Indices: 112280533--112280566 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
112280523 ATAATAAAAT
112280533 ATAT-AAA
1 ATATCAAA
112280540 ATAT-AAA
1 ATATCAAA
112280547 ATATCAAA
1 ATATCAAA
112280555 ATATCAAA
1 ATATCAAA
112280563 ATAT
1 ATAT
112280567 TAGAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (8 bp):
ATATCAAA
Found at i:112280549 original size:24 final size:24
Alignment explanation
Indices: 112280522--112280577 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
112280512 TAATGATGTG
*
112280522 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
*
112280546 AAT-ATCAAAATATCAAAATATTAG
1 AATAAT-AAAATATCAAAATATTAA
112280570 AATAATAA
1 AATAATAA
112280578 TAATTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 8 0.30
24 17 0.63
25 2 0.07
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:112280573 original size:16 final size:15
Alignment explanation
Indices: 112280526--112280573 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
112280516 GATGTGAATA
112280526 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
112280542 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
*
112280557 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
112280573 A
1 A
112280574 ATAATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:112280719 original size:22 final size:22
Alignment explanation
Indices: 112280691--112280748 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 22
112280681 ATACTACATC
112280691 AATATGTACATATATAAAAAAA
1 AATATGTACATATATAAAAAAA
* **
112280713 AATATGT-GATA-AT-ATTAAA
1 AATATGTACATATATAAAAAAA
112280732 AATATGTACATAATATA
1 AATATGTACAT-ATATA
112280749 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
19 11 0.39
20 4 0.14
21 4 0.14
22 9 0.32
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (22 bp):
AATATGTACATATATAAAAAAA
Found at i:112280790 original size:22 final size:24
Alignment explanation
Indices: 112280727--112280791 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
112280717 TGTGATAATA
*
112280727 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
112280752 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
112280775 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
112280792 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:112280876 original size:22 final size:23
Alignment explanation
Indices: 112280810--112280939 Score: 79
Period size: 22 Copynumber: 5.5 Consensus size: 23
112280800 GTAAAAAAAA
*
112280810 ATATATAAATAATATAATATTAAAG
1 ATATATATATAA-ATAATA-TAAAG
*
112280835 ATATATATATAAATAGTATAAA-
1 ATATATATATAAATAATATAAAG
** *
112280857 ATATATATATACGTAATATAAAT
1 ATATATATATAAATAATATAAAG
* * *
112280880 TTAAAATATACCTAATATATTA-AAAG
1 AT-ATATATA--TAA-ATAATATAAAG
*
112280906 A-ATATATATAATATAATATTAAG
1 ATATATATATAA-ATAATATAAAG
*
112280929 AAATATA-ATAA
1 ATATATATATAA
112280940 TAACAAAAAA
Statistics
Matches: 83, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
22 28 0.34
23 13 0.16
24 22 0.27
25 11 0.13
26 5 0.06
27 4 0.05
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATATATATAAATAATATAAAG
Found at i:112281458 original size:30 final size:30
Alignment explanation
Indices: 112281422--112281595 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
112281412 TAGGTACAAG
* *
112281422 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
112281452 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
112281482 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
112281512 TGGTGGTGGAAAA-GAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
112281541 TGGTGGTGGAAAATGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
112281571 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
112281596 TGAGAAAAGT
Statistics
Matches: 134, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
29 28 0.21
30 106 0.79
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:112281552 original size:59 final size:59
Alignment explanation
Indices: 112281422--112281595 Score: 312
Period size: 59 Copynumber: 2.9 Consensus size: 59
112281412 TAGGTACAAG
*
112281422 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGG-AAAAGAGTGGCTAGTGGAGT
112281482 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
*
112281541 TGGTGGTGGAAAATGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAA-GAGTGGCTAGT
112281596 TGAGAAAAGT
Statistics
Matches: 111, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
59 62 0.56
60 49 0.44
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (59 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
Found at i:112281591 original size:89 final size:90
Alignment explanation
Indices: 112281422--112281595 Score: 296
Period size: 89 Copynumber: 1.9 Consensus size: 90
112281412 TAGGTACAAG
* *
112281422 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAGAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
*
112281487 GTGGAAAAGGTGTGGCTAGTGGAGT
66 GTGGAAAAGGAGTGGCTAGTGGAGT
* *
112281512 TGGTGGTGGA-AAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAATGTGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAGAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
112281576 GTGGAAAAGGAGTGGCTAGT
66 GTGGAAAAGGAGTGGCTAGT
112281596 TGAGAAAAGT
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 69 0.87
90 10 0.13
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (90 bp):
TGGTGGTGGAGAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
GTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:112282454 original size:76 final size:75
Alignment explanation
Indices: 112282298--112282504 Score: 285
Period size: 76 Copynumber: 2.8 Consensus size: 75
112282288 ATGTGAACCC
* * * * * *
112282298 AAGGCTCAAATCACATCTCGCAATATGAGTTGA--TTTTTAAAAAATAGAAATTTAAAAATACCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAA-TTGAAAATACCT
112282361 CAGCGTGTCCT
65 CAGCGTGTCCT
* *
112282372 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTAACAACAGAAATTGAAAATACCT
112282437 CAGCGTGTCCT
65 CAGCGTGTCCT
*
112282448 AAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTT-ACGAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAC-AACAGAAATTGAA
112282505 GAACAGAAAT
Statistics
Matches: 119, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
74 32 0.27
75 21 0.18
76 52 0.44
77 14 0.12
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (75 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATACCTC
AGCGTGTCCT
Found at i:112282510 original size:14 final size:14
Alignment explanation
Indices: 112282491--112282518 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
112282481 TTTTTTTTAC
112282491 GAACAGAAATTGAA
1 GAACAGAAATTGAA
112282505 GAACAGAAATTGAA
1 GAACAGAAATTGAA
112282519 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:112282631 original size:73 final size:74
Alignment explanation
Indices: 112282500--112282668 Score: 250
Period size: 73 Copynumber: 2.3 Consensus size: 74
112282490 CGAACAGAAA
* *
112282500 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
112282565 GAGTTAATTT
65 GAGTCAATTT
* ** *
112282575 TTGACAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
*
112282639 AGTCGATTT
66 AGTCAATTT
112282648 TTGAAAAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
112282669 CCAGAAATTG
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
73 58 0.69
75 26 0.31
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTCAATTT
Found at i:112282667 original size:14 final size:14
Alignment explanation
Indices: 112282648--112282682 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
112282638 GAGTCGATTT
112282648 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
112282662 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
112282676 TTGAAAA
1 TTGAAAA
112282683 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:112282726 original size:162 final size:160
Alignment explanation
Indices: 112282338--112282827 Score: 639
Period size: 160 Copynumber: 3.0 Consensus size: 160
112282328 TGATTTTTAA
* *
112282338 AAAATAGAAATTTAAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAA-TTGAAAATACCTCAGCGTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGA
* * *
112282400 GTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTC
64 GTT-A--ATTTTTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * *
112282465 TAGCAATATGAGTTGATTTTTTTTACGAACAGAAATTG
125 TCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTG
* *
112282503 AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
112282568 TTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
112282633 AATATGAGTCGATTTTTGAAAAACAGAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
* *
112282665 AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT--G
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * **
112282728 CTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
112282793 AATATGAGTTGATTTTTGACAAACAAAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
112282825 AAA
1 AAA
112282828 TTACCTCAGC
Statistics
Matches: 291, Mismatches: 28, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
160 90 0.31
161 2 0.01
162 72 0.25
164 66 0.23
165 20 0.07
166 8 0.03
167 31 0.11
168 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (160 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGACAAACAGAAATTG
Found at i:112282735 original size:87 final size:87
Alignment explanation
Indices: 112282575--112282757 Score: 230
Period size: 87 Copynumber: 2.1 Consensus size: 87
112282565 GAGTTAATTT
* *
112282575 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
* *
112282639 AGTCGATTTTTGAAAAACAGAAA
65 ACTCAATTTTTGAAAAACAGAAA
* *
112282662 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
** *
112282727 G-CT-AATTTTTGATGAACATAAA
64 GACTCAATTTTTGAAAAACAGAAA
112282749 TT-AAAACCA
1 TTGAAAACCA
112282758 CCTCAGCGTG
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
86 10 0.12
87 46 0.55
88 1 0.01
89 27 0.32
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
CTCAATTTTTGAAAAACAGAAA
Found at i:112282811 original size:73 final size:71
Alignment explanation
Indices: 112282702--112282898 Score: 247
Period size: 71 Copynumber: 2.8 Consensus size: 71
112282692 GTGTGAGCCA
* * *
112282702 AGGCTCAACTCACCTCTTGCAATAT--GCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
112282765 GTGTCCTG
66 --GTCCTG
** * * **
112282773 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
*
112282838 GTCTTG
66 GTCCTG
*
112282844 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATG-AACATAAATTAAAA
112282899 AACGAAATTG
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
71 78 0.72
73 30 0.28
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:112283024 original size:70 final size:71
Alignment explanation
Indices: 112282890--112283027 Score: 217
Period size: 70 Copynumber: 2.0 Consensus size: 71
112282880 TTTGAAACAT
* *
112282890 AAATTAAAAAACGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAAACAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
112282955 GAGTTG
66 GAGTTG
* *
112282961 AAATTAAAACACAAAAATT-AAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTTGCAATA
1 AAATTAAAAAAC-AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
112283024 TGAG
65 TGAG
112283028 CTGATTTTGA
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
70 30 0.48
71 27 0.44
72 5 0.08
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAAACAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTG
Found at i:112283054 original size:156 final size:155
Alignment explanation
Indices: 112282757--112283041 Score: 425
Period size: 157 Copynumber: 1.8 Consensus size: 155
112282747 AATTAAAACC
** *
112282757 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
* ** *
112282822 TTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
66 TTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTGAAA
*
112282887 CATAAATTAAAAAACGAAATTGAAAAT
129 AATAAATTAAAAAACGAAATTGAAAAT
112282914 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAA
*
112282977 ATT-AAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAAA
65 ATTGAAAATACCTCAGCGT-CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAA
112283040 AA
129 AA
112283042 GTAGAAATTA
Statistics
Matches: 117, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
153 9 0.08
155 17 0.15
156 43 0.37
157 48 0.41
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (155 bp):
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
TTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
TAAATTAAAAAACGAAATTGAAAAT
Found at i:112283192 original size:125 final size:121
Alignment explanation
Indices: 112282927--112283277 Score: 374
Period size: 125 Copynumber: 2.8 Consensus size: 121
112282917 TCAGCGTGTC
* ** *
112282927 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATT-AAAATACCTCA
1 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAA-ACAGAAATTGAAAATACCTCA
* * *
112282991 GCGTGCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAA
65 GCGTG-CCGAGGCTCAACTCACCTCTCGCAATATGA---GA-TTTGAAAAAATACAAATTAA
* * *
112283053 ---AAGGTTCAAC-CACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTC
1 CTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTT-AAAAACAGAAATTGAAAATACCTC
* *
112283114 ATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA-A-TTGAAAAAATACCACATGTAA
64 AGCGTG-CC-GAGGCTCAACTCACCTCTCGCAATATGAGATTTGAAAAAATA-CAAAT-TAA
112283174 TCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACC
1 -CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTAAAAACAGAAATTGAAAATACC
112283239 TCAGCATGTGACCGAGGCTCAACTCACCTCTCGCAATAT
62 TCAGC--GTG-CCGAGGCTCAACTCACCTCTCGCAATAT
112283278 AAGTTGATTT
Statistics
Matches: 191, Mismatches: 18, Indels: 30
0.80 0.08 0.13
Matches are distributed among these distances:
119 10 0.05
120 3 0.02
121 4 0.02
123 33 0.17
124 31 0.16
125 51 0.27
127 24 0.13
128 30 0.16
129 5 0.03
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.26
Consensus pattern (121 bp):
CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAACAGAAATTGAAAATACCTCAG
CGTGCCGAGGCTCAACTCACCTCTCGCAATATGAGATTTGAAAAAATACAAATTAA
Found at i:112283261 original size:75 final size:74
Alignment explanation
Indices: 112283175--112283800 Score: 855
Period size: 75 Copynumber: 8.5 Consensus size: 74
112283165 CACATGTAAT
* * *
112283175 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
112283240 CAGCATGTGAC
66 CAGC--GTGTC
*
112283251 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTGAAAACAGAAATTGAAAATAC
*
112283315 CTCAACGTGTC
64 CTCAGCGTGTC
* **
112283326 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---TTTTGAAAACAGAAATTG-AAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
112283387 CAGCGTGTC
66 CAGCGTGTC
*
112283396 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTGAAAACAGAAATTGAAAATAC
112283461 CTCA-CGTGT-
64 CTCAGCGTGTC
**
112283470 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---TTTTGAAAACAGAAATTG-AAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
112283531 CAGCATGTC
66 CAGCGTGTC
112283540 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACC
*
112283605 TCAACGTGTC
65 TCAGCGTGTC
* ** * *
112283615 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
112283678 CAGCGTGTC
66 CAGCGTGTC
** * * *
112283687 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAA-AACAGAAATTGAAAATACC
112283752 TCAGCGTGTC
65 TCAGCGTGTC
* *
112283762 CTGAGGCTCAACTCACCTCTGGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
112283801 GAAAAACAAA
Statistics
Matches: 496, Mismatches: 35, Indels: 39
0.87 0.06 0.07
Matches are distributed among these distances:
68 10 0.02
69 22 0.04
70 80 0.16
71 17 0.03
72 67 0.14
74 56 0.11
75 170 0.34
76 42 0.08
77 32 0.06
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:112283711 original size:147 final size:146
Alignment explanation
Indices: 112283180--112283814 Score: 967
Period size: 147 Copynumber: 4.3 Consensus size: 146
112283170 GTAATCTGAA
** * *
112283180 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCTCAGCA
1 GCTCAACTCATTTCTCGCAATATAAGTTGA---TTTTGAAAACAGAAATTG-AAATACCTCAGC-
* *
112283245 TGTGACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTAAAACAGAAATTGA
61 -GTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGA
112283309 AAATACCTCAACGTGTCTTGAG
125 AAATACCTCAACGTGTCTTGAG
112283331 GCTCAACTCATTTCTCGCAATATAAGTTGATTTTGAAAACAGAAATTGAAATACCTCAGCGTGTC
1 GCTCAACTCATTTCTCGCAATATAAGTTGATTTTGAAAACAGAAATTGAAATACCTCAGCGTGTC
*
112283396 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
66 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
112283461 CTC-ACGTGTC-TGAG
131 CTCAACGTGTCTTGAG
*
112283475 GCTCAACTCATTTCTCGCAATATAAGTTGATTTTGAAAACAGAAATTGAAATACCTCAGCATGTC
1 GCTCAACTCATTTCTCGCAATATAAGTTGATTTTGAAAACAGAAATTGAAATACCTCAGCGTGTC
112283540 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTGAAAACAGAAATTGAAAATAC
66 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
112283604 CTCAACGTGTCTTGAG
131 CTCAACGTGTCTTGAG
112283620 GCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCATTTCTCGCAATATAAGTTG-ATTTTGAAAACAGAAATTGAAA-TACCTCAGCGTG
** * *
112283685 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTT-AACAACAGAAATTGAAAT
64 TCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAA-AACAGAAATTGAAAA
* *
112283748 TACCTCAGCGTGTCCTGAG
128 TACCTCAACGTGTCTTGAG
** * * *
112283767 GCTCAACTCACCTCTGGCAATATGAGTTGATTTTGAAAAACAAAAATT
1 GCTCAACTCATTTCTCGCAATATAAGTTGATTTTG-AAAACAGAAATT
112283815 AAAAGCTTAA
Statistics
Matches: 456, Mismatches: 21, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
143 32 0.07
144 109 0.24
145 45 0.10
146 94 0.21
147 132 0.29
148 17 0.04
151 27 0.06
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (146 bp):
GCTCAACTCATTTCTCGCAATATAAGTTGATTTTGAAAACAGAAATTGAAATACCTCAGCGTGTC
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
CTCAACGTGTCTTGAG
Found at i:112283965 original size:71 final size:70
Alignment explanation
Indices: 112283823--112283992 Score: 209
Period size: 71 Copynumber: 2.4 Consensus size: 70
112283813 TTAAAAGCTT
* * * * * **
112283823 AACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGA
1 AACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTGCCCCGA
112283887 GGCTC
66 GGCTC
* * **
112283892 AACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGTGTCTTG
1 AACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGTGCCCCG
112283957 AGGCTC
65 AGGCTC
112283963 AACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AACTCACT-TCTCGCAATATGAGTTGATTTT
112283993 CCTTGGAAAG
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 21 0.24
70 6 0.07
71 60 0.69
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTGCCCCGA
GGCTC
Found at i:112377721 original size:15 final size:15
Alignment explanation
Indices: 112377701--112377752 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
112377691 ACTACAAAAC
112377701 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
112377716 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
112377735 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
112377750 ATT
1 ATT
112377753 AACATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:112377816 original size:16 final size:16
Alignment explanation
Indices: 112377785--112377821 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
112377775 ATGCTAATAA
112377785 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
112377801 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
112377817 TATTA
1 TATTA
112377822 AAATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:112388824 original size:28 final size:28
Alignment explanation
Indices: 112388781--112388877 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 28
112388771 CACTTTGTGC
112388781 TATTCT-GTGTGTTTTGGATGGATCATAT
1 TATTCTGGTGTGTTTTGGA-GGATCATAT
* *
112388809 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATCATAT
* *
112388837 GATACTGGTGTGTTTTGGAGGAT--TA-
1 TATTCTGGTGTGTTTTGGAGGATCATAT
112388862 TA--CTGGTGTGTTTTGG
1 TATTCTGGTGTGTTTTGG
112388878 TTGGACATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
23 14 0.23
25 1 0.02
26 2 0.03
28 34 0.55
29 11 0.18
ACGTcount: A:0.16, C:0.05, G:0.32, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATCATAT
Found at i:112389135 original size:21 final size:21
Alignment explanation
Indices: 112389087--112389138 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
112389077 TATGTGCGTA
*
112389087 TTTCAGGCACCTTGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
***
112389108 CAGCAGGCACCTCGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
112389129 TTTCAGGCAC
1 TTTCAGGCAC
112389139 TTATGTGTCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.29
Consensus pattern (21 bp):
TTTCAGGCACCTCGTGTGTCG
Found at i:112396107 original size:46 final size:46
Alignment explanation
Indices: 112396047--112396320 Score: 397
Period size: 46 Copynumber: 6.0 Consensus size: 46
112396037 TTTGACATGA
* * * * * *
112396047 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** * *
112396093 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATTACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
**
112396139 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
112396185 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
112396231 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
112396277 TGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
112396321 AGAGCACACT
Statistics
Matches: 208, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 204 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:112402628 original size:27 final size:27
Alignment explanation
Indices: 112402598--112402657 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
112402588 ACATGCTTGG
*
112402598 CATCGAAGAAACCACCAACCACATTGA
1 CATCAAAGAAACCACCAACCACATTGA
112402625 CATCAAAGAAACCACCAACCACATTGA
1 CATCAAAGAAACCACCAACCACATTGA
112402652 CATCAA
1 CATCAA
112402658 GGATCTTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.47, C:0.33, G:0.08, T:0.12
Consensus pattern (27 bp):
CATCAAAGAAACCACCAACCACATTGA
Found at i:112403129 original size:51 final size:51
Alignment explanation
Indices: 112403053--112403157 Score: 140
Period size: 51 Copynumber: 2.1 Consensus size: 51
112403043 ATTTTAAGGA
* * *
112403053 CTCCCAACTGAATTGCTTAATGTGATTGGATAAGTATGAAAGGCTTATTAT
1 CTCCCAACTGAATTGCTTAAGGTGATTAGATAAGCATGAAAGGCTTATTAT
* * *
112403104 CTCCCAATTGAATTGC-TAGAGGTGATTAGATAAGCATGAAAGTCTTCTTAT
1 CTCCCAACTGAATTGCTTA-AGGTGATTAGATAAGCATGAAAGGCTTATTAT
112403155 CTC
1 CTC
112403158 TTAGTAATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 2 0.04
51 45 0.96
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (51 bp):
CTCCCAACTGAATTGCTTAAGGTGATTAGATAAGCATGAAAGGCTTATTAT
Found at i:112405306 original size:29 final size:29
Alignment explanation
Indices: 112405287--112405350 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
112405277 ATGTATTATA
112405287 TAATAATGAAAATAGTTATATAATAATAG
1 TAATAATGAAAATAGTTATATAATAATAG
* *
112405316 TTATAATGATAATAGTTATAATAATAGAATAG
1 TAATAATGAAAATAGTTAT-ATAAT--AATAG
112405348 TAA
1 TAA
112405351 GTGGAAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 17 0.59
30 5 0.17
32 7 0.24
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (29 bp):
TAATAATGAAAATAGTTATATAATAATAG
Found at i:112405329 original size:15 final size:15
Alignment explanation
Indices: 112405289--112405337 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
112405279 GTATTATATA
*
112405289 ATAATGAAAATAGTT
1 ATAATGATAATAGTT
*
112405304 AT-ATAATAATAGTT
1 ATAATGATAATAGTT
112405318 ATAATGATAATAGTT
1 ATAATGATAATAGTT
112405333 ATAAT
1 ATAAT
112405338 AATAGAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (15 bp):
ATAATGATAATAGTT
Found at i:112405451 original size:26 final size:26
Alignment explanation
Indices: 112405375--112405452 Score: 102
Period size: 26 Copynumber: 2.9 Consensus size: 26
112405365 AATTAAATAG
112405375 AAAAAGAAGAAAGAAAAAAAAGGGAAAAA
1 AAAAAGAAGAAAG-AAAAAAA-GG-AAAA
*
112405404 AAAAAGAAGAAAGAAAATAAGGAAAA
1 AAAAAGAAGAAAGAAAAAAAGGAAAA
* *
112405430 ATAAAGAAGAAAGAAAAGAAGGA
1 AAAAAGAAGAAAGAAAAAAAGGA
112405453 GAACGCACGG
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 25 0.54
27 2 0.04
28 6 0.13
29 13 0.28
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (26 bp):
AAAAAGAAGAAAGAAAAAAAGGAAAA
Found at i:112410214 original size:30 final size:30
Alignment explanation
Indices: 112410178--112410240 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
112410168 ACTTATTTTA
*
112410178 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTACTTTAAAGGCAT
* * *
112410208 TTGTTAATTTTTTTATTACTTTAGAGTCAT
1 TTGTTAATTTTCTTATTACTTTAAAGGCAT
112410238 TTG
1 TTG
112410241 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.06, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTACTTTAAAGGCAT
Found at i:112419238 original size:18 final size:18
Alignment explanation
Indices: 112419215--112419251 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
112419205 TGTTCATTTG
112419215 ACTGAATTAACCAAATTA
1 ACTGAATTAACCAAATTA
112419233 ACTGAATTAACCAAATTA
1 ACTGAATTAACCAAATTA
112419251 A
1 A
112419252 AACCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.27
Consensus pattern (18 bp):
ACTGAATTAACCAAATTA
Found at i:112429486 original size:30 final size:31
Alignment explanation
Indices: 112429452--112429509 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
112429442 TCTTCAAGGT
112429452 TAAAATTTGCA-A-TTAATCCCTATACTTTGA
1 TAAAATTTG-ATACTTAATCCCTATACTTTGA
*
112429482 TAAAATTTGATACTTAATCTCTATACTT
1 TAAAATTTGATACTTAATCCCTATACTT
112429510 AAAAAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 1 0.04
30 10 0.40
31 14 0.56
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (31 bp):
TAAAATTTGATACTTAATCCCTATACTTTGA
Found at i:112430661 original size:5 final size:5
Alignment explanation
Indices: 112430651--112430678 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
112430641 CAAACCTTGA
112430651 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
112430679 TTCTCGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:112435094 original size:10 final size:10
Alignment explanation
Indices: 112435079--112435105 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
112435069 ATTATCATTT
112435079 AAATTTTTTA
1 AAATTTTTTA
112435089 AAATTTTTTA
1 AAATTTTTTA
112435099 AAATTTT
1 AAATTTT
112435106 AAATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AAATTTTTTA
Found at i:112437152 original size:31 final size:31
Alignment explanation
Indices: 112437089--112437153 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
112437079 TCATTAAACC
* *
112437089 ATTCGAAAGTTTTCATTTAAGCCCTTGAGCT
1 ATTCGAAAGTTTTCATATAAGCCATTGAGCT
* *
112437120 ATTCGAAAG-TTTCTATATAAGTCATTGGGCT
1 ATTCGAAAGTTTTC-ATATAAGCCATTGAGCT
112437151 ATT
1 ATT
112437154 AAATTTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 4 0.14
31 25 0.86
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (31 bp):
ATTCGAAAGTTTTCATATAAGCCATTGAGCT
Done.