Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 342 of 349
Found at i:112935356 original size:46 final size:44
Alignment explanation
Indices: 112935289--112935495 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 44
112935279 ATCGATGCAG
* * *
112935289 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
112935335 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * * * *
112935379 TGTCCCAGACATGTCTGACATTGGCTAACATCTCG-AGGTCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGACGCA
* * * * *
112935425 TGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-T-C-GTAGCCGACGCA
*
112935471 TGTTCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
112935496 CCTCGTCTCA
Statistics
Matches: 136, Mismatches: 16, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
43 5 0.04
44 32 0.24
45 2 0.01
46 96 0.71
47 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:112935515 original size:46 final size:44
Alignment explanation
Indices: 112935332--112935540 Score: 163
Period size: 46 Copynumber: 4.6 Consensus size: 44
112935322 CCGTGCTGAC
*
112935332 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * * * * *
112935376 GCATGTCCCAGACATGTCTGACATTGGCTAACATCTCGAGGTCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
112935422 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* * *
112935468 GCATGTTCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
*
112935514 GCCATGTCCCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
112935541 GGCACACAAA
Statistics
Matches: 131, Mismatches: 22, Indels: 20
0.76 0.13 0.12
Matches are distributed among these distances:
43 3 0.02
44 27 0.21
45 4 0.03
46 72 0.55
47 15 0.11
48 10 0.08
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:112938135 original size:46 final size:46
Alignment explanation
Indices: 112938068--112938242 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
112938058 TGTAACCCGC
112938068 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
112938114 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * ** *
112938164 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
112938207 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
112938243 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.58
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:112938184 original size:93 final size:93
Alignment explanation
Indices: 112938076--112938246 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
112938066 GCCCATAAGT
* ** *
112938076 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
112938141 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
112938169 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
112938234 TGAGTTCGGATGC
66 CGAGCTCGGATGC
112938247 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:112938832 original size:20 final size:18
Alignment explanation
Indices: 112938798--112938834 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
112938788 GCAACTCATA
112938798 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
112938816 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
112938835 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:112939552 original size:3 final size:3
Alignment explanation
Indices: 112939538--112939635 Score: 92
Period size: 3 Copynumber: 32.3 Consensus size: 3
112939528 ACTTATTTTC
* * *
112939538 TAT TAT TGT TAT TAT TAA TA- TAC TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
112939585 TAAT GTAT TGT TAT TAT TAT TTT CTAC T-T TAT TAT TAT TAT TAT TAC
1 T-AT -TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
112939632 TAT T
1 TAT T
112939636 GCTATCATCA
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
2 3 0.04
3 69 0.88
4 5 0.06
5 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:112939567 original size:23 final size:24
Alignment explanation
Indices: 112939537--112939635 Score: 89
Period size: 23 Copynumber: 4.2 Consensus size: 24
112939527 TACTTATTTT
112939537 CTATTATTGTTATTATTAATA-TA
1 CTATTATTGTTATTATTAATATTA
* *
112939560 CTATTATTATTATTATTATTATTA
1 CTATTATTGTTATTATTAATATTA
* *
112939584 TTAATGTATTGTTATTATT-AT-TTT
1 CT-AT-TATTGTTATTATTAATATTA
* * *
112939608 CTACT-TTATTATTATTATTATTA
1 CTATTATTGTTATTATTAATATTA
112939631 CTATT
1 CTATT
112939636 GCTATCATCA
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
21 10 0.17
22 2 0.03
23 26 0.44
24 6 0.10
25 3 0.05
26 12 0.20
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (24 bp):
CTATTATTGTTATTATTAATATTA
Found at i:112939983 original size:22 final size:21
Alignment explanation
Indices: 112939941--112939983 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
112939931 GTATTAAATT
* *
112939941 CTTTTTATTATTTATTATAAA
1 CTTTTTACTATTAATTATAAA
*
112939962 CTTTTCTACTATTAATTTTAAA
1 CTTTT-TACTATTAATTATAAA
112939984 AATTCACACG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (21 bp):
CTTTTTACTATTAATTATAAA
Found at i:112941543 original size:46 final size:46
Alignment explanation
Indices: 112941486--112941583 Score: 178
Period size: 46 Copynumber: 2.1 Consensus size: 46
112941476 ATGTTGTGGT
*
112941486 AGAGACAGGGTCGATCAAATCGTCTGTAGGTACATAAAATGCTTGA
1 AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATGCTTGA
112941532 AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATGCTTGA
1 AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATGCTTGA
*
112941578 ATAGAT
1 AGAGAT
112941584 GATATGTATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.26
Consensus pattern (46 bp):
AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATGCTTGA
Found at i:112942854 original size:138 final size:136
Alignment explanation
Indices: 112942611--112942873 Score: 307
Period size: 138 Copynumber: 1.9 Consensus size: 136
112942601 TCAATTGAGC
* * *
112942611 AGCAAGATCATCATAGTCAACAATAGATTGATCATCATCCATCCTTTAATGTTGAATAAAGTCAC
1 AGCAAGATCATCACAGTCAACAACAGA-TGATCATCATCCATCCCTTAATGTTGAATAAAGTCAC
* * ** * * *
112942676 TAATAAATCCTGGATTGAATCTGAAATAGTGATCTCGCACGAGTGCTTGCATATAGTGTTAGCCA
65 TAATAAATCCCGGACTGAATCTGAAATAGAAACCTCGCACGAATGCCTGCATATAGTGTTAGCCA
112942741 ACAGGGT
130 ACAGGGT
* *
112942748 AGCAAGATCATCACAGTCAACAACGGA-G-TGATCATCCATCCCTTAAT-TATGAATTAATAATG
1 AGCAAGATCATCACAGTCAACAACAGATGATCATCATCCATCCCTTAATGT-TGAA-T-A-AA-G
** * *
112942810 TCACTAATAGCTCCCGGACTGAATCTGAAATGGAAACCTTGCACGAATGCCTGCATATAGTGTT
61 TCACTAATAAATCCCGGACTGAATCTGAAATAGAAACCTCGCACGAATGCCTGCATATAGTGTT
112942874 GATGGCTTGA
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
133 1 0.01
134 21 0.20
135 2 0.02
136 1 0.01
137 26 0.25
138 54 0.51
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (136 bp):
AGCAAGATCATCACAGTCAACAACAGATGATCATCATCCATCCCTTAATGTTGAATAAAGTCACT
AATAAATCCCGGACTGAATCTGAAATAGAAACCTCGCACGAATGCCTGCATATAGTGTTAGCCAA
CAGGGT
Found at i:112944960 original size:62 final size:62
Alignment explanation
Indices: 112944889--112945015 Score: 245
Period size: 62 Copynumber: 2.0 Consensus size: 62
112944879 ATCTAATTTA
112944889 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
1 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
*
112944951 TAATATAATAATTTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
1 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
112945013 TAA
1 TAA
112945016 GAGCTTTTAA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (62 bp):
TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
Found at i:112947830 original size:42 final size:42
Alignment explanation
Indices: 112947766--112947849 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
112947756 ATAAATAGGA
*
112947766 ATGAGATTTCATTTAGAAATCACACCAACAAATTCTAATATT
1 ATGAGATTTCAGTTAGAAATCACACCAACAAATTCTAATATT
* * *
112947808 ATGATATTTCAGTTGGAAATCACACCAACAAATTTTAATATT
1 ATGAGATTTCAGTTAGAAATCACACCAACAAATTCTAATATT
112947850 CTTTCTTTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (42 bp):
ATGAGATTTCAGTTAGAAATCACACCAACAAATTCTAATATT
Found at i:112948864 original size:20 final size:20
Alignment explanation
Indices: 112948839--112948896 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
112948829 AGATAAGGGC
*
112948839 ACATGCCCGTGTGGCCTGGG
1 ACATGCCCGTGTGGCCTGGA
112948859 ACATGCTCC-TGTGGCCTGGA
1 ACATGC-CCGTGTGGCCTGGA
112948879 ACATGCCCGTGTGGCCTG
1 ACATGCCCGTGTGGCCTG
112948897 CCCATGGGCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.12, C:0.31, G:0.34, T:0.22
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGA
Found at i:112949399 original size:13 final size:13
Alignment explanation
Indices: 112949381--112949416 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
112949371 AGATAATTAG
112949381 CAAATCATACATA
1 CAAATCATACATA
112949394 CAAATCATACATA
1 CAAATCATACATA
*
112949407 TAAATTCATA
1 CAAA-TCATA
112949417 TCAAACTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:112950648 original size:64 final size:64
Alignment explanation
Indices: 112950547--112950674 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
112950537 ACAAAAAAAA
* *
112950547 AGGTGATTTTTTGGCTTGCGATTTCTATACTCCTTTTCTTTTTCTTCTTTCTTTTAATGATTTT
1 AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
112950611 AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
1 AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
112950675 TACTCAAATC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.14, C:0.15, G:0.12, T:0.59
Consensus pattern (64 bp):
AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
Found at i:112953059 original size:131 final size:131
Alignment explanation
Indices: 112952826--112953216 Score: 529
Period size: 131 Copynumber: 3.0 Consensus size: 131
112952816 TAACTATTCA
* ** * ** *
112952826 TTTAAAAATTCTTTAAAACGGAGGCAATACTCGGTGTTTGGCAATTC-GGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACAAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * *
112952890 GTGCTGGGTTACGATTT-CTCGTTTATTCAAAACAATCGAGTATTCCTTTAGGATTTCACTCATG
66 GTGCTGGGTTGCGATTTCCT-GTTTGTTCAAAATAATCGAATATTCCTTTAGGATTTCACTCATG
112952954 -C
130 TC
* * **
112952955 TTTTAAAAATTTTTGAAAATGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
1 -TTTAAAAATTCTTCAAAACAAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
* * *
112953020 CATGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAACATTCCTTT-GGAATTTCATTCAT
65 CGTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGG-ATTTCACTCAT
112953084 GTC
129 GTC
112953087 TTTAAAAATTCTTCAAAACAAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACAAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * *
112953152 GTGCTGGGTTGCAATCTCCTGTTTGTTCCAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGGATTTCACTCATGT
112953217 TCTCCAAATT
Statistics
Matches: 230, Mismatches: 26, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
130 41 0.18
131 185 0.80
132 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (131 bp):
TTTAAAAATTCTTCAAAACAAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGGATTTCACTCATGT
C
Found at i:112953305 original size:31 final size:31
Alignment explanation
Indices: 112953270--112953330 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
112953260 CGAGGAGTCG
112953270 TGCCCTACTGGGCTGGGTTTCGATTTTCTCA
1 TGCCCTACTGGGCTGGGTTTCGATTTTCTCA
*
112953301 TGCCCTACTGTGCTGGGTTTCGATTTTCTC
1 TGCCCTACTGGGCTGGGTTTCGATTTTCTC
112953331 GTTGGACTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.08, C:0.26, G:0.25, T:0.41
Consensus pattern (31 bp):
TGCCCTACTGGGCTGGGTTTCGATTTTCTCA
Found at i:112954832 original size:3 final size:3
Alignment explanation
Indices: 112954807--112954847 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
112954797 TTATCTCATT
*
112954807 TAA TAGA TAA -AA T-A TAG TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
112954848 GTAAATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 4 0.12
3 26 0.79
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:112956450 original size:32 final size:32
Alignment explanation
Indices: 112956409--112956473 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
112956399 GAGGAGAATA
112956409 GCCTAAGAATGTACATAGAGCTGATCAAAATT
1 GCCTAAGAATGTACATAGAGCTGATCAAAATT
112956441 GCCTAAGAATGTACATAGAGCTGATCAAAATT
1 GCCTAAGAATGTACATAGAGCTGATCAAAATT
112956473 G
1 G
112956474 AAGGTTGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (32 bp):
GCCTAAGAATGTACATAGAGCTGATCAAAATT
Found at i:112957041 original size:138 final size:138
Alignment explanation
Indices: 112956788--112957060 Score: 435
Period size: 138 Copynumber: 2.0 Consensus size: 138
112956778 ATAGATACCA
*
112956788 TTTCAATGGTTGAAACTCACCCCCTCCATTCATCTAAAGCACTTTTAATTTGACCCCAAGTATAT
1 TTTCAATGCTTGAAACTCACCCCCTCCATTCATCTAAAGCACTTTTAATTTGACCCCAAGTATAT
112956853 TTTCAACTTCTTGGTGAAATTGAGGAAAAACTGTAACAACATCTATCTTTTTCTTCAAAAAATAA
66 TTTCAACTTCTTGGTGAAATTGAGGAAAAACTGTAACAACATCTATCTTTTTCTTCAAAAAATAA
*
112956918 TGCCACAT
131 AGCCACAT
* *
112956926 TTTCAATGCTTGAAACTCACCCCCTCCA-TCTGTCTAAAGCACTTTTAATTTGACCCTAAGTAT-
1 TTTCAATGCTTGAAACTCACCCCCTCCATTC-ATCTAAAGCACTTTTAATTTGACCCCAAGTATA
* * *
112956989 TCTTTCAACTTGTTGGTGAAATTGAGGAAAGACTGTAGCAACATCTGA-CTTTTTCTTCAAAAAA
65 T-TTTCAACTTCTTGGTGAAATTGAGGAAAAACTGTAACAACATCT-ATCTTTTTCTTCAAAAAA
112957053 TAAAGCCA
128 TAAAGCCA
112957061 TGTGTATCTA
Statistics
Matches: 125, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
137 3 0.02
138 121 0.97
139 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (138 bp):
TTTCAATGCTTGAAACTCACCCCCTCCATTCATCTAAAGCACTTTTAATTTGACCCCAAGTATAT
TTTCAACTTCTTGGTGAAATTGAGGAAAAACTGTAACAACATCTATCTTTTTCTTCAAAAAATAA
AGCCACAT
Found at i:112963030 original size:13 final size:14
Alignment explanation
Indices: 112963014--112963055 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
112963004 TTTCAATTTT
112963014 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
112963027 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
112963042 ATTTTAAATAATAT
1 ATTTT-AATAATAT
112963056 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:112963040 original size:16 final size:16
Alignment explanation
Indices: 112963018--112963054 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
112963008 AATTTTATTT
112963018 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
112963035 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
112963050 TAATA
1 TAATA
112963055 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:112963638 original size:13 final size:14
Alignment explanation
Indices: 112963601--112963639 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
112963591 CTAGAAAAAT
112963601 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
112963615 AAATCATTTTTC-G
1 AAATCATTTTCCAG
112963628 AAAATCATTTTC
1 -AAATCATTTTC
112963640 AGTAAAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:112968579 original size:28 final size:27
Alignment explanation
Indices: 112968548--112968625 Score: 90
Period size: 28 Copynumber: 3.0 Consensus size: 27
112968538 TTTTATAAAT
*
112968548 TATTTATTTTACGTTTTTATATATATA
1 TATTTATTTTAAGTTTTTATATATATA
* *
112968575 CTATTTATTTTAAGCTTTTACATAT-TA
1 -TATTTATTTTAAGTTTTTATATATATA
*
112968602 TA--TATTTTAAATTTTTATATATAT
1 TATTTATTTTAAGTTTTTATATATAT
112968626 TATGTAGTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 17 0.40
25 1 0.02
26 2 0.05
27 2 0.05
28 21 0.49
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (27 bp):
TATTTATTTTAAGTTTTTATATATATA
Found at i:112968623 original size:24 final size:24
Alignment explanation
Indices: 112968538--112968623 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 24
112968528 TCTTAAATTA
* * *
112968538 TTTTATAAATTATTTATTTTACGT
1 TTTTATATATTATATATTTTAAGT
*
112968562 TTTTATATATATACTATTTATTTTAAGC
1 TTTTATATAT-TA-TA--TATTTTAAGT
* *
112968590 TTTTACATATTATATATTTTAAAT
1 TTTTATATATTATATATTTTAAGT
112968614 TTTTATATAT
1 TTTTATATAT
112968624 ATTATGTAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
24 26 0.52
25 2 0.04
26 3 0.06
27 2 0.04
28 17 0.34
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (24 bp):
TTTTATATATTATATATTTTAAGT
Found at i:112968639 original size:26 final size:26
Alignment explanation
Indices: 112968590--112968649 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
112968580 TATTTTAAGC
* * *
112968590 TTTTACATATTATATATTTTAAATT-
1 TTTTATATATTATATAGTTCAAATTA
*
112968615 TTTATATATATTATGTAGTTCAAATTA
1 TTT-TATATATTATATAGTTCAAATTA
112968642 TTTTATAT
1 TTTTATAT
112968650 GTCATTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 23 0.79
27 3 0.10
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (26 bp):
TTTTATATATTATATAGTTCAAATTA
Found at i:112968703 original size:25 final size:26
Alignment explanation
Indices: 112968654--112968703 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
112968644 TTATATGTCA
112968654 TTTATTTTAAAAAATTTTATATATTG
1 TTTATTTTAAAAAATTTTATATATTG
*
112968680 TTTA-TTTAAAACCATTTTAT-TATT
1 TTTATTTTAAAA-AATTTTATATATT
112968704 ATTCACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (26 bp):
TTTATTTTAAAAAATTTTATATATTG
Found at i:112968713 original size:26 final size:25
Alignment explanation
Indices: 112968641--112968714 Score: 60
Period size: 26 Copynumber: 2.9 Consensus size: 25
112968631 AGTTCAAATT
* * *
112968641 ATTTTATATGTCATTTATTTTAAAAA
1 ATTTTATATATTATTCA-TTTAAAAA
* * *
112968667 ATTTTATATATTGTTTATTTAAAACC
1 ATTTTATATATTATTCATTTAAAA-A
112968693 ATTTTAT-TATTATTCACTTTAA
1 ATTTTATATATTATTCA-TTTAA
112968715 GTTTTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 14 0.35
26 26 0.65
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (25 bp):
ATTTTATATATTATTCATTTAAAAA
Found at i:112972527 original size:19 final size:19
Alignment explanation
Indices: 112972503--112972554 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
112972493 AACGTCTCTT
112972503 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCA-TCA
112972522 TTTGCATTACATTTCATCA
1 TTTGCATTACATTTCATCA
* *
112972541 TATGCATTAAATTT
1 TTTGCATTACATTT
112972555 TACGGAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 23 0.77
20 7 0.23
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (19 bp):
TTTGCATTACATTTCATCA
Found at i:112980402 original size:44 final size:44
Alignment explanation
Indices: 112980308--112980426 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 44
112980298 GTGAATTCAC
* * * * *
112980308 AAATCTTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTGC
1 AAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGGCTGAAGATGGA
* * *
112980352 AGATCTTGTCTCCCTAAGCAGTAGTGGAGCA-GATCGAATATGGA
1 AAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGGCT-GAAGATGGA
* *
112980396 AAATCTTGTCTCTCTAAGCAATAGTGGAGCA
1 AAATCTTGTCTCCCTAAGCAGTAGTGGAGCA
112980427 TATTTAAGCC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 2 0.03
44 61 0.97
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
AAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGGCTGAAGATGGA
Found at i:112980723 original size:88 final size:88
Alignment explanation
Indices: 112980457--112980769 Score: 411
Period size: 88 Copynumber: 3.6 Consensus size: 88
112980447 TAAGCAGCAG
*
112980457 TGGAGCAGG-TCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCAAAGCTACA
1 TGGAGC-GGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
112980521 AATCTCTTCTCCCTGAAATGGCAT
65 AATCTCTTCTCCCTGAAATGGCAT
** * * * * *
112980545 TAAAGCGACTCAAAGCCATAATTCTTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAA
*
112980610 ATCTCTTCTCCCTGAAATGGAAT
66 ATCTCTTCTCCCTGAAATGGCAT
* *
112980633 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTAAAGTTTCAGCGGAGTAGATCGGAA-CTAAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATC-GAAGCTACA
112980697 AATCTCTTCTCCCTGAAATGGCAT
65 AATCTCTTCTCCCTGAAATGGCAT
* * * *
112980721 TGGAGC-GATTGAAGCCACTAA-ACATTATCTACC-TGAAGTTGCAGCGGAG
1 TGGAGCGGCTCGAAGCCAC-AATTC-TTATCT-CCTTGAAGTTTCAGCGGAG
112980770 CCTACTGAAG
Statistics
Matches: 196, Mismatches: 24, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
87 12 0.06
88 179 0.91
89 5 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (88 bp):
TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAA
ATCTCTTCTCCCTGAAATGGCAT
Found at i:112980770 original size:44 final size:44
Alignment explanation
Indices: 112980704--112981131 Score: 268
Period size: 44 Copynumber: 9.5 Consensus size: 44
112980694 AAAAATCTCT
* * * * *
112980704 TCTCCCTGAAATGGCATTGGAGC-GATTGAAGCCACTAAACATTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC-AAACCTTA
* * ** * *
112980748 TCTACCTGAAGTTGCAGCGGAGCCTACTGAAGTTACAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
* * * * **
112980792 TCTCCCTGAAGTTACAGTGGAGCAAATTGAAGATACTAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
*
112980836 TCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
* * * * * **
112980880 TCTCCCTGAAATTACAGTGGAGCAGGTTGAAGATAGTAAGGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAA-ACCTTA
* * * * * * *
112980926 TTTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTATAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
* * * ** * *
112980970 TAC-CTCTGAAGTTGCAGTAGG-TCGGATCAAATCTACCATGGTGAATCTTA
1 T-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCTA-CA-----AACCTTA
* * *
112981020 TCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACTTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
* * * * * **
112981064 TCTCCCTAAAATTGCAGTGGGGCAGGTTGAAGTTACAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
* * *
112981108 TCTCCCTAAAGTTGTAGCGGAGCA
1 TCTCCCTGAAGTTGCAGTGGAGCA
112981132 AACTGAAACC
Statistics
Matches: 295, Mismatches: 76, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
44 213 0.72
45 15 0.05
46 33 0.11
49 5 0.02
50 29 0.10
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTA
Found at i:112980796 original size:88 final size:88
Alignment explanation
Indices: 112980656--112980912 Score: 234
Period size: 88 Copynumber: 2.9 Consensus size: 88
112980646 AGCCACAATT
* * * * * *
112980656 CTTATCT-CCTTAAAGTTTCAGCGGAGTAGATCGGAA-CTAAAAATCTCT-TCTCCCTGAAATGG
1 CTTATCTACC-TAAAGTTGCAGCGGAGCAGA-CTGAAGCTACAAACCT-TATCTCCCTGAAATGA
* * *
112980718 CATTGGAGC-GATTGAAGCCACTAAA
63 CAGTGGAGCAAATTGAAGACACTAAA
* ** * * *
112980743 CATTATCTACCTGAAGTTGCAGCGGAGCCTACTGAAGTTACAAACCTTATCTCCCTGAAGTTACA
1 C-TTATCTACCTAAAGTTGCAGCGGAGCAGACTGAAGCTACAAACCTTATCTCCCTGAAATGACA
* **
112980808 GTGGAGCAAATTGAAGATACTAGT
65 GTGGAGCAAATTGAAGACACTAAA
* * * *
112980832 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAG
1 CTTATCTACCTAAAGTTGCAGCGGAGCAGACTGAAGCTACAAACCTTATCTCCCTGAAATGACAG
**
112980897 TGGAGCAGGTTGAAGA
66 TGGAGCAAATTGAAGA
112980913 TAGTAAGGTC
Statistics
Matches: 137, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
87 6 0.04
88 117 0.85
89 14 0.10
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (88 bp):
CTTATCTACCTAAAGTTGCAGCGGAGCAGACTGAAGCTACAAACCTTATCTCCCTGAAATGACAG
TGGAGCAAATTGAAGACACTAAA
Found at i:112980837 original size:176 final size:176
Alignment explanation
Indices: 112980455--112980891 Score: 406
Period size: 176 Copynumber: 2.5 Consensus size: 176
112980445 ATTAAGCAGC
** * * * *
112980455 AGTGGAGCAGGTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCAAAGCTAC
1 AGTGGAGCAAATCGAAGACACAAGTCTTATCTCCTTAAAGTTTCAGCGGAGTAGATCAAAGCTAA
*
112980520 AAATCTCTTCTCCCTGAAATGGCATTAAAGCGACTCAAAGCCATAATTCTTATCTCCTTGAAGTT
66 AAATCTCTTCTCCCTGAAATGGCATTAAAGCGACTCAAAGCCATAATACTTATCTCCTTGAAGTT
*
112980585 CCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGA
131 CCAGCAGAGTAGATCGAAGCTACAAACCTCTTCTCCCTGAAATGGA
* *** * * *
112980631 ATTGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTAAAGTTTCAGCGGAGTAGATCGGAA-CTA
1 AGTGGAGCAAATCGAAGACACAAGTCTTATCTCCTTAAAGTTTCAGCGGAGTAGATC-AAAGCTA
** **
112980695 AAAATCTCTTCTCCCTGAAATGGCATTGGAGCGA-TTGAAGCCACTAA-ACATTATCTACC-TGA
65 AAAATCTCTTCTCCCTGAAATGGCATTAAAGCGACTCAAAGCCA-TAATAC-TTATCT-CCTTGA
* * * * * *
112980757 AGTTGCAGCGGAGCCTA-CT-GAAGTTACAAACCT-TATCTCCCTGAAGT-TA
127 AGTTCCAGCAGAG--TAGATCGAAGCTACAAACCTCT-TCTCCCTGAAATGGA
* * * * * * * **
112980806 CAGTGGAGCAAATTGAAGATACTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA
1 -AGTGGAGCAAATCGAAGACACAAGTCTTATCTCCTTAAAGTTTCAGCGGAGTAGATCAAAGCTA
* *
112980871 CAAACCT-TATCTCCCTGAAAT
65 AAAATCTCT-TCTCCCTGAAAT
112980892 TACAGTGGAG
Statistics
Matches: 217, Mismatches: 34, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
175 14 0.06
176 196 0.90
177 5 0.02
178 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (176 bp):
AGTGGAGCAAATCGAAGACACAAGTCTTATCTCCTTAAAGTTTCAGCGGAGTAGATCAAAGCTAA
AAATCTCTTCTCCCTGAAATGGCATTAAAGCGACTCAAAGCCATAATACTTATCTCCTTGAAGTT
CCAGCAGAGTAGATCGAAGCTACAAACCTCTTCTCCCTGAAATGGA
Found at i:112980913 original size:88 final size:89
Alignment explanation
Indices: 112980745--112981131 Score: 320
Period size: 88 Copynumber: 4.3 Consensus size: 89
112980735 CCACTAAACA
* * ** * * *
112980745 TTATCTACCTGAAGTTGCAGCGGAGCCTACTGAAGTTACAAACCTTATCTCCCTGAAGTTACAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAGT
**
112980810 GGAGCAAATTGAAGATACT-AGTC
66 GGAGCAGGTTGAAGATACTAAGTC
*
112980833 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAGT
*
112980898 GGAGCAGGTTGAAGATAGTAAGGTC
66 GGAGCAGGTTGAAGATACTAA-GTC
* * * * * * * * * *
112980923 TTATTTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTATAAATCTTATAC-CTCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTAT-CTCCCTGAAATTACAG
* * *
112980987 TAGG-TC-GGATCAA-AT-CTACCATGGTGAATC
65 T-GGAGCAGGTTGAAGATACTA--A----G--TC
* * * * *
112981017 TTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACTTTATCTCCCTAAAATTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAGT
* *
112981082 GGGGCAGGTTGAAGTTAC-AAGTC
66 GGAGCAGGTTGAAGATACTAAGTC
* * *
112981105 TTATCTCCCTAAAGTTGTAGCGGAGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCA
112981132 AACTGAAACC
Statistics
Matches: 235, Mismatches: 48, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
87 2 0.01
88 100 0.43
89 7 0.03
90 57 0.24
91 3 0.01
92 1 0.00
93 3 0.01
94 54 0.23
95 5 0.02
96 2 0.01
97 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (89 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAGT
GGAGCAGGTTGAAGATACTAAGTC
Found at i:112984453 original size:46 final size:47
Alignment explanation
Indices: 112984349--112984468 Score: 138
Period size: 48 Copynumber: 2.6 Consensus size: 47
112984339 TGTCTTCGAC
** * *
112984349 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATAATAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAATGCCATATATAT-AGAT
*
112984397 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAT-CCATATA-ACT-GAT
1 ATGGACTTACATGGCTCATTCCTGTCTCC-AATGCCATATATA-TAGAT
*
112984443 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
112984469 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 26 0.41
47 1 0.02
48 33 0.52
49 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAATGCCATATATATAGAT
Found at i:112985875 original size:130 final size:130
Alignment explanation
Indices: 112985719--112985989 Score: 343
Period size: 131 Copynumber: 2.1 Consensus size: 130
112985709 GCCTTATTTT
* * * * *
112985719 AGAA-TTTTAAAAATATGAGTGAAATTCTAAGGGA-TATTCAATTATTTTGAACAAA-CGGAAAA
1 AGAATTTTTAAAAACATGAGTGAAATTCCAAAGGAGTATTCAAGTATTTTGAACAAATAGG-AAA
* * *
112985781 TTGCAACCCAGCACGATAGGGCACTG-TTCCCCGAATTTCCAAACACCAAATATTGCCTTCGTTT
65 TTGCAACCCAGCACGATAGGGCAC-GATTCCCCGAATTGCCAAACACCAAACATCGCCTTCG-TT
*
112985845 TGA
128 TAA
* ** *
112985848 AGAATTTTTAAAGACATGAGTGAAATTCCAAAGGAGTATTTGAGTATTTTGGACAAATAGGAAAT
1 AGAATTTTTAAAAACATGAGTGAAATTCCAAAGGAGTATTCAAGTATTTTGAACAAATAGGAAAT
* * *
112985913 TGCAACCTAGCACGATAGGGCACGATTCCTCGAATTGCCAAACATCAAACATCGCCTTCGTTTAA
66 TGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACACCAAACATCGCCTTCGTTTAA
112985978 AGAATTTTTAAA
1 AGAATTTTTAAA
112985990 TGGATAATTA
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
129 4 0.03
130 43 0.35
131 73 0.60
132 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (130 bp):
AGAATTTTTAAAAACATGAGTGAAATTCCAAAGGAGTATTCAAGTATTTTGAACAAATAGGAAAT
TGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACACCAAACATCGCCTTCGTTTAA
Found at i:112986335 original size:15 final size:16
Alignment explanation
Indices: 112986317--112986346 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
112986307 TATATGAAAT
112986317 AATATA-AAAACAATC
1 AATATACAAAACAATC
112986332 AATATACAAAACAAT
1 AATATACAAAACAAT
112986347 ATAGAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (16 bp):
AATATACAAAACAATC
Found at i:112986347 original size:27 final size:26
Alignment explanation
Indices: 112986299--112986349 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
112986289 AATAATATGC
** *
112986299 AACAATAATATATGAAATAATATAAA
1 AACAATAATATACAAAACAATATAAA
112986325 AACAATCAATATACAAAACAATATA
1 AACAAT-AATATACAAAACAATATA
112986350 GAAATTAGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.65, C:0.10, G:0.02, T:0.24
Consensus pattern (26 bp):
AACAATAATATACAAAACAATATAAA
Found at i:112988050 original size:26 final size:25
Alignment explanation
Indices: 112988007--112988055 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
112987997 GCCTCTACAC
112988007 TTTATTTTAAATAGTTTTATACATTA
1 TTTATTTTAAATAGTTTT-TACATTA
* **
112988033 TTTATTTTAGATTTTTTTTACAT
1 TTTATTTTAAATAGTTTTTACAT
112988056 ATTAGTTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTATTTTAAATAGTTTTTACATTA
Found at i:112988255 original size:28 final size:27
Alignment explanation
Indices: 112988224--112988301 Score: 90
Period size: 28 Copynumber: 3.0 Consensus size: 27
112988214 TTTTATAAAT
*
112988224 TATTTATTTTACGTTTTTATATATATA
1 TATTTATTTTAAGTTTTTATATATATA
* *
112988251 CTATTTATTTTAAGCTTTTACATAT-TA
1 -TATTTATTTTAAGTTTTTATATATATA
*
112988278 TA--TATTTTAAATTTTTATATATAT
1 TATTTATTTTAAGTTTTTATATATAT
112988302 TATGTAGTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 17 0.40
25 1 0.02
26 2 0.05
27 2 0.05
28 21 0.49
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (27 bp):
TATTTATTTTAAGTTTTTATATATATA
Found at i:112988299 original size:24 final size:24
Alignment explanation
Indices: 112988214--112988299 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 24
112988204 TCTTAAATTA
* * *
112988214 TTTTATAAATTATTTATTTTACGT
1 TTTTATATATTATATATTTTAAGT
*
112988238 TTTTATATATATACTATTTATTTTAAGC
1 TTTTATATAT-TA-TA--TATTTTAAGT
* *
112988266 TTTTACATATTATATATTTTAAAT
1 TTTTATATATTATATATTTTAAGT
112988290 TTTTATATAT
1 TTTTATATAT
112988300 ATTATGTAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
24 26 0.52
25 2 0.04
26 3 0.06
27 2 0.04
28 17 0.34
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (24 bp):
TTTTATATATTATATATTTTAAGT
Found at i:112988315 original size:26 final size:26
Alignment explanation
Indices: 112988266--112988325 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
112988256 TATTTTAAGC
* * *
112988266 TTTTACATATTATATATTTTAAATT-
1 TTTTATATATTATATAGTTCAAATTA
*
112988291 TTTATATATATTATGTAGTTCAAATTA
1 TTT-TATATATTATATAGTTCAAATTA
112988318 TTTTATAT
1 TTTTATAT
112988326 GTCATTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 23 0.79
27 3 0.10
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (26 bp):
TTTTATATATTATATAGTTCAAATTA
Found at i:112988379 original size:25 final size:26
Alignment explanation
Indices: 112988330--112988379 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
112988320 TTATATGTCA
112988330 TTTATTTTAAAAAATTTTATATATTG
1 TTTATTTTAAAAAATTTTATATATTG
*
112988356 TTTA-TTTAAAACCATTTTAT-TATT
1 TTTATTTTAAAA-AATTTTATATATT
112988380 ATTCACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (26 bp):
TTTATTTTAAAAAATTTTATATATTG
Found at i:112988389 original size:26 final size:25
Alignment explanation
Indices: 112988317--112988390 Score: 60
Period size: 26 Copynumber: 2.9 Consensus size: 25
112988307 AGTTCAAATT
* * *
112988317 ATTTTATATGTCATTTATTTTAAAAA
1 ATTTTATATATTATTCA-TTTAAAAA
* * *
112988343 ATTTTATATATTGTTTATTTAAAACC
1 ATTTTATATATTATTCATTTAAAA-A
112988369 ATTTTAT-TATTATTCACTTTAA
1 ATTTTATATATTATTCA-TTTAA
112988391 GTTTTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 14 0.35
26 26 0.65
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (25 bp):
ATTTTATATATTATTCATTTAAAAA
Found at i:112992616 original size:15 final size:16
Alignment explanation
Indices: 112992596--112992633 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
112992586 CAATTACATG
112992596 TTTTGTTC-AATTAAC
1 TTTTGTTCTAATTAAC
112992611 TTTTGTTCTAATTAAC
1 TTTTGTTCTAATTAAC
112992627 TTTTGTT
1 TTTTGTT
112992634 TTGTTCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.21, C:0.11, G:0.08, T:0.61
Consensus pattern (16 bp):
TTTTGTTCTAATTAAC
Found at i:112993104 original size:23 final size:24
Alignment explanation
Indices: 112993074--112993136 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 24
112993064 GTGTGCTTTT
* *
112993074 TAATATTTATATTATTT-TTAATC
1 TAATATTTATATTATTTAATAATA
* *
112993097 TAATATTTA-ATAATTTAATATTA
1 TAATATTTATATTATTTAATAATA
112993120 TAATATTTTATATTATT
1 TAATA-TTTATATTATT
112993137 ATAGATTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 6 0.19
23 17 0.53
24 4 0.12
25 5 0.16
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (24 bp):
TAATATTTATATTATTTAATAATA
Found at i:112993115 original size:15 final size:16
Alignment explanation
Indices: 112993092--112993147 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
112993082 ATATTATTTT
*
112993092 TAATCTAATATT-TAA
1 TAATTTAATATTATAA
112993107 TAATTTAATATTATAA
1 TAATTTAATATTATAA
* *
112993123 T-ATTTTATATTATTA
1 TAATTTAATATTATAA
112993138 TAGATTTAAT
1 TA-ATTTAAT
112993148 TTGTGTTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
15 24 0.71
16 4 0.12
17 6 0.18
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (16 bp):
TAATTTAATATTATAA
Found at i:112993327 original size:34 final size:34
Alignment explanation
Indices: 112993284--112993351 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
112993274 ATAATCTTTC
112993284 TTACTTTTGAGATAAGTAAAGCTTGCTATCCATT
1 TTACTTTTGAGATAAGTAAAGCTTGCTATCCATT
*
112993318 TTACTTTTGAGATAAGTAAAGTTTGCTATCCATT
1 TTACTTTTGAGATAAGTAAAGCTTGCTATCCATT
112993352 AGGAGAATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (34 bp):
TTACTTTTGAGATAAGTAAAGCTTGCTATCCATT
Found at i:112997583 original size:25 final size:25
Alignment explanation
Indices: 112997551--112997612 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
112997541 TATATATGTA
*
112997551 TAAT-AAATATATAAGATTAAAATT
1 TAATAAAATATATAAAATTAAAATT
* * *
112997575 TATTAAAATCTATAAAATTAAACTT
1 TAATAAAATATATAAAATTAAAATT
112997600 TAATAATAATATA
1 TAATAA-AATATA
112997613 ATAATATATG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
24 3 0.10
25 22 0.73
26 5 0.17
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (25 bp):
TAATAAAATATATAAAATTAAAATT
Found at i:112998455 original size:19 final size:18
Alignment explanation
Indices: 112998428--112998463 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
112998418 TATATGAACT
*
112998428 ATTAATATATGATATAGC
1 ATTAATATATAATATAGC
112998446 ATTAATTATATAATATAG
1 ATTAA-TATATAATATAG
112998464 TAGGAGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (18 bp):
ATTAATATATAATATAGC
Found at i:112998867 original size:5 final size:5
Alignment explanation
Indices: 112998857--112998888 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
112998847 ATTATTAATT
112998857 TATGA TATGA TATGA TAT-A TATGA TATGA TAT
1 TATGA TATGA TATGA TATGA TATGA TATGA TAT
112998889 AACATTACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.44
Consensus pattern (5 bp):
TATGA
Found at i:112998880 original size:14 final size:14
Alignment explanation
Indices: 112998861--112998889 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
112998851 TTAATTTATG
112998861 ATATGATATGATAT
1 ATATGATATGATAT
112998875 ATATGATATGATAT
1 ATATGATATGATAT
112998889 A
1 A
112998890 ACATTACAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (14 bp):
ATATGATATGATAT
Found at i:112998946 original size:180 final size:180
Alignment explanation
Indices: 112998598--112998946 Score: 402
Period size: 180 Copynumber: 1.9 Consensus size: 180
112998588 ATCATTATAT
*
112998598 TATAGATTATAATAAAATATATAATATTACATAATATTATAATGTTTAATCATTGATGCATATAT
1 TATAGATTATAATAAAAGATATAATATTACATAATATTATAATGTTTAATCATTGATGCATATAT
* * * * * *
112998663 ATAAACTATTAATATAGTATATAGGATAAGATATGATATAACATTATATAATATATTAGGAGTGT
66 ATAAACTATTAATATA-TATATAGGATAAGATATGATATAACATGATATAATACAGTAGAAGGGC
* *
112998728 TAACTTTCAAATATATGAAAAAAATAGGGGCATAGAGCACAAATAATAATA
130 TAACTTTCAAATATATCAAAAAAATAGGGACATAGAGCACAAATAATAATA
* * * * *
112998779 TATA-ATTATAATAAAAGATATAGTATTACATGATATTATAATGTTTAATTATTGGTGTATATAT
1 TATAGATTATAATAAAAGATATAATATTACATAATATTATAATGTTTAATCATTGATGCATATAT
* * * * *
112998843 ATAAATTATTAAT-T-TATGATATGATATGATAT-ATATGATATGATATAACATTACAGTAGAAG
66 ATAAACTATTAATATATAT-ATAGGATAAGATATGATATAACATGATAT-A-A-TACAGTAGAAG
* ** *
112998905 GGCTAACTTTCAAATGTA-CAAAAAGTGTAGGGACTTAGAGCA
127 GGCTAACTTTCAAATATATCAAAAA-AATAGGGACATAGAGCA
112998947 TATTTCAACC
Statistics
Matches: 140, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
177 14 0.10
178 13 0.09
179 7 0.05
180 102 0.73
181 4 0.03
ACGTcount: A:0.45, C:0.05, G:0.13, T:0.36
Consensus pattern (180 bp):
TATAGATTATAATAAAAGATATAATATTACATAATATTATAATGTTTAATCATTGATGCATATAT
ATAAACTATTAATATATATATAGGATAAGATATGATATAACATGATATAATACAGTAGAAGGGCT
AACTTTCAAATATATCAAAAAAATAGGGACATAGAGCACAAATAATAATA
Found at i:112999107 original size:18 final size:17
Alignment explanation
Indices: 112999075--112999108 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
112999065 ATCATTGATG
112999075 AATATATATAAACTATC
1 AATATATATAAACTATC
*
112999092 AATATATTATATACTAT
1 AATATA-TATAAACTAT
112999109 ATGATATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (17 bp):
AATATATATAAACTATC
Found at i:112999115 original size:5 final size:5
Alignment explanation
Indices: 112999107--112999135 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
112999097 ATTATATACT
112999107 ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATAT
112999136 AGCATTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:113003977 original size:26 final size:26
Alignment explanation
Indices: 113003948--113004055 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
113003938 TGGTACAAAT
113003948 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
113003974 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
113004000 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
113004026 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
113004052 TGAT
1 TGAT
113004056 GGGCATTTAA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:113005567 original size:25 final size:26
Alignment explanation
Indices: 113005539--113005590 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
113005529 TTTACAGTTT
113005539 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
113005564 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
113005590 T
1 T
113005591 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:113011059 original size:26 final size:26
Alignment explanation
Indices: 113011030--113011137 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
113011020 TGGTACAAAT
113011030 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
113011056 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
113011082 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
113011108 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
113011134 TGAT
1 TGAT
113011138 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:113015379 original size:38 final size:38
Alignment explanation
Indices: 113015323--113015406 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
113015313 AACTAGTCCT
* * *
113015323 GCTTAGTGCCTAGTAGGCTTAATGCTAGTGTTATTTAG
1 GCTTAGTGCCTAGCAGGCTTAATGCCAGTGTTATTCAG
* *
113015361 GCTTAGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAG
1 GCTTAGTGCCTAGCAGGCTTAATGCCAGTGTTATTCAG
*
113015399 GGTTAGTG
1 GCTTAGTG
113015407 TCGATGTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36
Consensus pattern (38 bp):
GCTTAGTGCCTAGCAGGCTTAATGCCAGTGTTATTCAG
Found at i:113015399 original size:22 final size:22
Alignment explanation
Indices: 113015374--113015425 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
113015364 TAGTGCCTAG
*
113015374 CAGGCTTAGTGCCGGTGTTATT
1 CAGGCTTAGTGCCGATGTTATT
* * *
113015396 CAGGGTTAGTGTCGATGTTTTT
1 CAGGCTTAGTGCCGATGTTATT
113015418 CAGGCTTA
1 CAGGCTTA
113015426 TTGCAATTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38
Consensus pattern (22 bp):
CAGGCTTAGTGCCGATGTTATT
Found at i:113020666 original size:9 final size:9
Alignment explanation
Indices: 113020654--113020736 Score: 55
Period size: 9 Copynumber: 9.4 Consensus size: 9
113020644 TTAAAACTAA
113020654 AAAAAATAT
1 AAAAAATAT
*
113020663 -AAAAATCT
1 AAAAAATAT
*
113020671 TAAAAA-AT
1 AAAAAATAT
* *
113020679 ACAAAATTT
1 AAAAAATAT
* *
113020688 TAAAATTAT
1 AAAAAATAT
*
113020697 TAAAAATCAT
1 AAAAAAT-AT
*
113020707 AAAATATAT
1 AAAAAATAT
*
113020716 -AGAAATAT
1 AAAAAATAT
113020724 AAAAAATAT
1 AAAAAATAT
113020733 AAAA
1 AAAA
113020737 TTTTATAAAG
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
8 18 0.33
9 30 0.55
10 7 0.13
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (9 bp):
AAAAAATAT
Found at i:113020675 original size:17 final size:17
Alignment explanation
Indices: 113020655--113020736 Score: 76
Period size: 17 Copynumber: 4.7 Consensus size: 17
113020645 TAAAACTAAA
113020655 AAAAATATAAAAATCTT
1 AAAAATATAAAAATCTT
*
113020672 AAAAA-ATACAAAATTTT
1 AAAAATATA-AAAATCTT
* *
113020689 AAAATTATTAAAAATCAT
1 AAAAATA-TAAAAATCTT
* * *
113020707 AAAATATATAGAAATATA
1 AAAA-ATATAAAAATCTT
113020725 AAAAATATAAAA
1 AAAAATATAAAA
113020737 TTTTATAAAG
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
16 3 0.06
17 23 0.45
18 21 0.41
19 4 0.08
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (17 bp):
AAAAATATAAAAATCTT
Found at i:113020678 original size:18 final size:17
Alignment explanation
Indices: 113020654--113020736 Score: 69
Period size: 18 Copynumber: 4.8 Consensus size: 17
113020644 TTAAAACTAA
*
113020654 AAAAAATATAAAAATCTT
1 AAAAAATATAAAAAT-AT
* *
113020672 AAAAAATA-CAAAATTT
1 AAAAAATATAAAAATAT
* *
113020688 TAAAATTATTAAAAATCAT
1 AAAAAATA-TAAAAAT-AT
* *
113020707 AAAATATATAGAAATAT
1 AAAAAATATAAAAATAT
113020724 AAAAAATATAAAA
1 AAAAAATATAAAA
113020737 TTTTATAAAG
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
16 8 0.16
17 18 0.35
18 19 0.37
19 6 0.12
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (17 bp):
AAAAAATATAAAAATAT
Found at i:113020684 original size:26 final size:25
Alignment explanation
Indices: 113020655--113020736 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
113020645 TAAAACTAAA
113020655 AAAAATATAAAAATCTTAAAAAATAC
1 AAAAATATAAAAAT-TTAAAAAATAC
* * *
113020681 -AAAATTTTAAAATTATTAAAAAT-C
1 AAAAATATAAAAATT-TAAAAAATAC
* *
113020705 ATAAAATATATAGAAATATAAAAAATAT
1 A-AAAATATA-A-AAATTTAAAAAATAC
113020733 AAAA
1 AAAA
113020737 TTTTATAAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 11
0.69 0.13 0.18
Matches are distributed among these distances:
24 2 0.05
25 18 0.43
26 6 0.14
27 11 0.26
28 5 0.12
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (25 bp):
AAAAATATAAAAATTTAAAAAATAC
Found at i:113020697 original size:52 final size:53
Alignment explanation
Indices: 113020636--113020741 Score: 135
Period size: 52 Copynumber: 2.0 Consensus size: 53
113020626 GCTTTTATTA
* *
113020636 AAAATTTATTAAAACT-AAAAAAAATATAAAAATCTTAAAAAATACAAAATTTT
1 AAAATTTATTAAAAATCAAAAAAAATATAAAAAT-ATAAAAAATACAAAATTTT
* * * *
113020689 AAAA-TTATTAAAAATCATAAAATATATAGAAATATAAAAAATATAAAATTTT
1 AAAATTTATTAAAAATCAAAAAAAATATAAAAATATAAAAAATACAAAATTTT
113020741 A
1 A
113020742 TAAAGCCATA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 28 0.61
53 18 0.39
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (53 bp):
AAAATTTATTAAAAATCAAAAAAAATATAAAAATATAAAAAATACAAAATTTT
Found at i:113020737 original size:26 final size:25
Alignment explanation
Indices: 113020671--113020738 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
113020661 ATAAAAATCT
* *
113020671 TAAAAAATACAAAATTTTAAAATTA
1 TAAAAAATATAAAATTATAAAATTA
*
113020696 TTAAAAATCATAAAATATATAGAAA-TA
1 TAAAAAAT-ATAAAAT-TATA-AAATTA
113020723 TAAAAAATATAAAATT
1 TAAAAAATATAAAATT
113020739 TTATAAAGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 8 0.22
26 13 0.36
27 12 0.33
28 3 0.08
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (25 bp):
TAAAAAATATAAAATTATAAAATTA
Found at i:113026508 original size:169 final size:169
Alignment explanation
Indices: 113026229--113026569 Score: 673
Period size: 169 Copynumber: 2.0 Consensus size: 169
113026219 CAGACAAATA
113026229 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
1 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
113026294 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
66 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
113026359 CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
131 CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
113026398 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
1 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
113026463 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
66 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
*
113026528 CAATTTCAGTTGGTTCACTTTCATATATAAGTCAGTTTC
131 CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
113026567 TAA
1 TAA
113026570 ATTACATTCT
Statistics
Matches: 171, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 171 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.38
Consensus pattern (169 bp):
TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
Found at i:113031534 original size:18 final size:18
Alignment explanation
Indices: 113031511--113031545 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
113031501 AGCAGCAGCA
*
113031511 GAACCTGTTAAAGAATCT
1 GAACCTGATAAAGAATCT
*
113031529 GAACCTGATGAAGAATC
1 GAACCTGATAAAGAATC
113031546 AGAGCCTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (18 bp):
GAACCTGATAAAGAATCT
Found at i:113034073 original size:31 final size:30
Alignment explanation
Indices: 113034008--113034073 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
113033998 AGATTTTTTT
* *
113034008 ATTTTCAATTTAGCCCCACAATTTGTTGCG
1 ATTTTCAATTTAGCCCCACAATCTGCTGCG
*
113034038 ATTTTCAATTTGGCCCC-CAATGCTGCTGCG
1 ATTTTCAATTTAGCCCCACAAT-CTGCTGCG
113034068 CATTTT
1 -ATTTT
113034074 GATTGAAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 4 0.13
30 22 0.71
31 5 0.16
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (30 bp):
ATTTTCAATTTAGCCCCACAATCTGCTGCG
Found at i:113034259 original size:17 final size:18
Alignment explanation
Indices: 113034229--113034275 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
113034219 CTGTTATTTA
* *
113034229 TTATTATTAATTATAATCT
1 TTATTA-TATTTATAATAT
*
113034248 TTA-TATATTTATCATAT
1 TTATTATATTTATAATAT
113034265 TTATTATATTT
1 TTATTATATTT
113034276 TATATATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 12 0.50
18 9 0.38
19 3 0.12
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTATATTTATAATAT
Found at i:113034435 original size:22 final size:22
Alignment explanation
Indices: 113034410--113034465 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
113034400 TCTAATATTG
*
113034410 TATTATATATATAT-TTCTCATA
1 TATTATAAATATATGTTCTCA-A
* *
113034432 TATTATAAACATGTGTTCTCAA
1 TATTATAAATATATGTTCTCAA
*
113034454 TATTATACATAT
1 TATTATAAATAT
113034466 TATTATGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.48
Consensus pattern (22 bp):
TATTATAAATATATGTTCTCAA
Found at i:113047339 original size:75 final size:74
Alignment explanation
Indices: 113047232--113047378 Score: 249
Period size: 75 Copynumber: 2.0 Consensus size: 74
113047222 TATATTTTTC
*
113047232 AAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTAAATTTC
1 AAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGCTAAGGTATTTTAAATTTC
113047297 TGCTTTTCAA
66 TG-TTTTCAA
* * *
113047307 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGCTAAGGTATTTTAAATTTC
113047372 TGTTTTC
66 TGTTTTC
113047379 TCAATTTATA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
74 5 0.07
75 63 0.93
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGCTAAGGTATTTTAAATTTC
TGTTTTCAA
Found at i:113047423 original size:163 final size:163
Alignment explanation
Indices: 113047141--113047635 Score: 825
Period size: 163 Copynumber: 3.0 Consensus size: 163
113047131 TGTTTTTTAA
113047141 AAAAAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAAT
1 AAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAAT
*
113047206 TTCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCA
65 TTCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
113047271 GGGCACGCTGAGGTATTTTAAATTTCTGCTTTTC
130 GGGCACGCTGAGGTATTTTAAATTTCTGCTTTTC
*
113047305 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTAAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATT
*
113047370 TCTGTTTTCTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 TCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
113047435 GGCACGCTGAGGTATTTTCAATTTCTGCTTTTC
131 GGCACGCTGAGGTATTTTAAATTTCTGCTTTTC
* * * *
113047468 AAAAAAATTAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATT
*
113047533 TCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-G
66 TCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
113047597 GGTCACATG-TCGAGGTATTTTCAAA-ATCTGCTTTTC
131 GG-CAC--GCT-GAGGTATTTT-AAATTTCTGCTTTTC
113047633 AAA
1 AAA
113047636 TTAAGTTTAA
Statistics
Matches: 313, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
162 3 0.01
163 277 0.88
164 7 0.02
165 24 0.08
166 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (163 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATT
TCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
GGCACGCTGAGGTATTTTAAATTTCTGCTTTTC
Found at i:113047500 original size:75 final size:75
Alignment explanation
Indices: 113047395--113047541 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 75
113047385 TATATTTTTC
* *
113047395 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
113047460 TGCTTTTCAA
66 TGCTTTTCAA
*
113047470 AAAAATTAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
113047535 TGTTTTT
66 TGCTTTT
113047542 TCAATTTATA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGCTTTTCAA
Found at i:113047674 original size:87 final size:88
Alignment explanation
Indices: 113047477--113047677 Score: 223
Period size: 87 Copynumber: 2.3 Consensus size: 88
113047467 CAAAAAAATT
* * ** *
113047477 AACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
1 AACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAATCTGTCTTT
* * * *
113047542 TCAATTTATATTTTTCAAAAATC
66 TCAAATTATATGTTTAAAAAACC
* *
113047565 AACTCATATTGCGAG-AGATGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAATCTG-
1 AACTCATATTGCGAGAAG-TGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCAAAATCTGT
113047627 CTTTTCAAATTA-A-GTTTAAAAAACC
62 CTTTTCAAATTATATGTTTAAAAAACC
*
113047652 AATTCATATTGCGAGAAGTGAGTTGA
1 AACTCATATTGCGAGAAGTGAGTTGA
113047678 ACCTTAGCTC
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
87 32 0.33
88 32 0.33
89 11 0.11
90 21 0.22
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (88 bp):
AACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAATCTGTCTTT
TCAAATTATATGTTTAAAAAACC
Found at i:113048880 original size:17 final size:17
Alignment explanation
Indices: 113048858--113048892 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
113048848 TGATTTTTTC
**
113048858 TATTTTCATTTCTATTT
1 TATTTTCAAATCTATTT
113048875 TATTTTCAAATCTATTT
1 TATTTTCAAATCTATTT
113048892 T
1 T
113048893 TCTATACCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTTCAAATCTATTT
Found at i:113049580 original size:17 final size:18
Alignment explanation
Indices: 113049550--113049596 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
113049540 CTGTTATTTA
* *
113049550 TTATTATTAATTATAATCT
1 TTATTA-TATTTATAATAT
*
113049569 TTA-TATATTTATCATAT
1 TTATTATATTTATAATAT
113049586 TTATTATATTT
1 TTATTATATTT
113049597 TATATATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 12 0.50
18 9 0.38
19 3 0.12
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTATATTTATAATAT
Found at i:113053952 original size:19 final size:20
Alignment explanation
Indices: 113053928--113053980 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
113053918 ACATGTCATT
113053928 ATTTAATTAATTTTTTTA-A
1 ATTTAATTAATTTTTTTATA
**
113053947 ATTTAAAAAATATTTTTTATA
1 ATTTAATTAAT-TTTTTTATA
113053968 ATTT--TTAATTTTT
1 ATTTAATTAATTTTT
113053981 AAAATAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
20 7 0.25
21 5 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTAATTAATTTTTTTATA
Found at i:113053972 original size:9 final size:9
Alignment explanation
Indices: 113053960--113054019 Score: 61
Period size: 9 Copynumber: 6.4 Consensus size: 9
113053950 TAAAAAATAT
113053960 TTTTTATAA
1 TTTTTATAA
113053969 -TTTT-TAA
1 TTTTTATAA
113053976 TTTTTAAAATAA
1 TTTTT---ATAA
113053988 TTTTTATAA
1 TTTTTATAA
*
113053997 TTTTTTTGAA
1 TTTTTAT-AA
113054007 TTTTTATAA
1 TTTTTATAA
113054016 TTTT
1 TTTT
113054020 AAAAAATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 3 0.07
8 8 0.19
9 16 0.37
10 8 0.19
12 8 0.19
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:113054012 original size:31 final size:30
Alignment explanation
Indices: 113053935--113054012 Score: 97
Period size: 28 Copynumber: 2.6 Consensus size: 30
113053925 ATTATTTAAT
** *
113053935 TAATTTTTTTAAATTTAAAAAATATTTTTTA
1 TAATTTTTTT-AATTTTTAAAATAATTTTTA
113053966 TAA--TTTTTAATTTTTAAAATAATTTTTA
1 TAATTTTTTTAATTTTTAAAATAATTTTTA
113053994 TAATTTTTTTGAATTTTTA
1 TAATTTTTTT-AATTTTTA
113054013 TAATTTTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 20 0.49
29 5 0.12
30 5 0.12
31 11 0.27
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (30 bp):
TAATTTTTTTAATTTTTAAAATAATTTTTA
Found at i:113054027 original size:19 final size:19
Alignment explanation
Indices: 113053967--113054027 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
113053957 TATTTTTTAT
*
113053967 AATTTTTA-ATTTTTAAAA
1 AATTTTTATAATTTTAAAA
****
113053985 TAATTTTTATAATTTTTTTG
1 -AATTTTTATAATTTTAAAA
113054005 AATTTTTATAATTTTAAAA
1 AATTTTTATAATTTTAAAA
113054024 AATT
1 AATT
113054028 AATTAAATTT
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 27 0.84
20 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
AATTTTTATAATTTTAAAA
Found at i:113055843 original size:23 final size:24
Alignment explanation
Indices: 113055799--113055845 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
113055789 TAATTACGAC
*
113055799 AAAAATTATATCTATTTAATATTT
1 AAAAATTATATATATTTAATATTT
113055823 AAAAATTA-ATAT-TTTATATATTT
1 AAAAATTATATATATTTA-ATATTT
113055846 TTATAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 9 0.43
24 8 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
AAAAATTATATATATTTAATATTT
Found at i:113059429 original size:50 final size:50
Alignment explanation
Indices: 113059354--113059454 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
113059344 ACAGGACAAT
113059354 ACTCAAACCGTAAAAGGGACGGGGATACATGTAGTTTATACAAAATAAAA
1 ACTCAAACCGTAAAAGGGACGGGGATACATGTAGTTTATACAAAATAAAA
* * ** *
113059404 ACTCAGACCGTAAAATGGATTGGGATACATGTGGTTTATACAAAATAAAA
1 ACTCAAACCGTAAAAGGGACGGGGATACATGTAGTTTATACAAAATAAAA
113059454 A
1 A
113059455 GAAGCAAATC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.23
Consensus pattern (50 bp):
ACTCAAACCGTAAAAGGGACGGGGATACATGTAGTTTATACAAAATAAAA
Found at i:113064581 original size:15 final size:15
Alignment explanation
Indices: 113064543--113064582 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
113064533 CTATCTTTTC
*
113064543 AAAGCAAAAAAAAAA
1 AAAGCAAAAGAAAAA
*
113064558 AAAGAAAAAGAAAAA
1 AAAGCAAAAGAAAAA
*
113064573 GAAGCAAAAG
1 AAAGCAAAAG
113064583 CAAAGAGATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAGCAAAAGAAAAA
Found at i:113078277 original size:24 final size:24
Alignment explanation
Indices: 113078250--113078296 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
113078240 CCCTTTCCCA
*
113078250 CTCT-TTTCTTTCCC-TATCTTTT
1 CTCTCTTTCTTTCCTCTATCTTTT
*
113078272 CTCTCTTTCTTTCCTCTTTCTTTT
1 CTCTCTTTCTTTCCTCTATCTTTT
113078296 C
1 C
113078297 CCCCTCCGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 9 0.43
24 8 0.38
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.64
Consensus pattern (24 bp):
CTCTCTTTCTTTCCTCTATCTTTT
Found at i:113078485 original size:21 final size:22
Alignment explanation
Indices: 113078431--113078485 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
113078421 CTTATTATTA
*
113078431 TTTATTTTTATTTTACTATTTC
1 TTTATTTTTATTTTACTATTGC
**
113078453 TTTATTACTATTTT-CT-TCTGC
1 TTTATTTTTATTTTACTAT-TGC
113078474 TTTATTTTTATT
1 TTTATTTTTATT
113078486 GCTAATTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 1 0.04
21 14 0.52
22 12 0.44
ACGTcount: A:0.16, C:0.11, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTATTTTTATTTTACTATTGC
Found at i:113081737 original size:26 final size:26
Alignment explanation
Indices: 113081707--113081820 Score: 192
Period size: 26 Copynumber: 4.4 Consensus size: 26
113081697 AAAAGACATG
*
113081707 CCCATTATCATGGAATATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
*
113081733 TCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
*
113081759 CCCATTATCATGGAATATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
*
113081785 TCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
113081811 CCCATTATCA
1 CCCATTATCA
113081821 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (26 bp):
CCCATTATCATGGAACATTTACCTAA
Found at i:113081763 original size:52 final size:52
Alignment explanation
Indices: 113081707--113081820 Score: 228
Period size: 52 Copynumber: 2.2 Consensus size: 52
113081697 AAAAGACATG
113081707 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
113081759 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
113081811 CCCATTATCA
1 CCCATTATCA
113081821 ATTTGTACCA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (52 bp):
CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
Found at i:113083106 original size:6 final size:6
Alignment explanation
Indices: 113083097--113083129 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
113083087 TGTCTTTAAA
113083097 TTTATT TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTT
113083130 CCTTTTCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:113083135 original size:18 final size:18
Alignment explanation
Indices: 113083097--113083135 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
113083087 TGTCTTTAAA
*
113083097 TTTATTTTTATTTTTATT
1 TTTATTTTTATTTTTACT
*
113083115 TTTATTTTTATTTTTCCT
1 TTTATTTTTATTTTTACT
113083133 TTT
1 TTT
113083136 CTTCTTATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTATTTTTATTTTTACT
Found at i:113086872 original size:13 final size:13
Alignment explanation
Indices: 113086856--113086882 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
113086846 CCCTATTTGG
113086856 GATTGAGATTTTA
1 GATTGAGATTTTA
113086869 GATTGAGATTTTA
1 GATTGAGATTTTA
113086882 G
1 G
113086883 CCTACTCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (13 bp):
GATTGAGATTTTA
Found at i:113089067 original size:17 final size:16
Alignment explanation
Indices: 113089022--113089069 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
113089012 TTAAATAACA
*
113089022 TATAAAATAATTACTC
1 TATAAAATAATTATTC
113089038 T-TAAAACTAAATTATTC
1 TATAAAA-T-AATTATTC
113089055 TGATAAAATAATTAT
1 T-ATAAAATAATTAT
113089070 CACTTATCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
15 5 0.19
16 2 0.07
17 14 0.52
18 1 0.04
19 5 0.19
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (16 bp):
TATAAAATAATTATTC
Found at i:113099455 original size:20 final size:20
Alignment explanation
Indices: 113099413--113099476 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
113099403 TTTGATTTTG
*
113099413 TTTTAACATATTTATTAAT-A
1 TTTTAATATATTT-TTAATAA
113099433 TTTTAATATATTTTTAATAA
1 TTTTAATATATTTTTAATAA
*
113099453 TTTGT-ATTTATTTTTAATAA
1 TTT-TAATATATTTTTAATAA
113099473 TTTT
1 TTTT
113099477 TAATTTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
19 6 0.15
20 33 0.82
21 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTTAATATATTTTTAATAA
Found at i:113099477 original size:10 final size:10
Alignment explanation
Indices: 113099423--113099480 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
113099413 TTTTAACATA
*
113099423 TTTATTAATAT
1 TTTAATAAT-T
113099434 TTTAATATATT
1 TTTAATA-ATT
113099445 TTTAATAATT
1 TTTAATAATT
* * *
113099455 TGTATTTATT
1 TTTAATAATT
113099465 TTTAATAATT
1 TTTAATAATT
113099475 TTTAAT
1 TTTAAT
113099481 TTTTTAGAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
10 23 0.59
11 14 0.36
12 2 0.05
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTAATAATT
Found at i:113103640 original size:22 final size:20
Alignment explanation
Indices: 113103615--113103659 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
113103605 ATTTTTAATC
*
113103615 AATCTAATATATCTATTATATT
1 AATCTAAAATAT-TA-TATATT
113103637 AATCTAAAATATTATATATT
1 AATCTAAAATATTATATATT
113103657 AAT
1 AAT
113103660 AATTAGTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.41
21 2 0.09
22 11 0.50
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (20 bp):
AATCTAAAATATTATATATT
Found at i:113103916 original size:18 final size:18
Alignment explanation
Indices: 113103895--113103958 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
113103885 TGACAAAAAC
*
113103895 AATAAAAAAATAAAAATT
1 AATAAAAAATTAAAAATT
**
113103913 AATAAAAATTATTAAATTTT
1 AATAAAAA--ATTAAAAATT
*
113103933 AATAAAAAATTAAAAGTT
1 AATAAAAAATTAAAAATT
*
113103951 ATTAAAAA
1 AATAAAAA
113103959 TAGAAAAGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
18 23 0.61
20 15 0.39
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
AATAAAAAATTAAAAATT
Found at i:113103921 original size:10 final size:10
Alignment explanation
Indices: 113103895--113103945 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
113103885 TGACAAAAAC
113103895 AATAAAAA--
1 AATAAAAATT
113103903 AATAAAAATT
1 AATAAAAATT
113103913 AATAAAAATT
1 AATAAAAATT
* **
113103923 ATTAAATTTT
1 AATAAAAATT
113103933 AATAAAAAATT
1 AAT-AAAAATT
113103944 AA
1 AA
113103946 AAGTTATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
8 8 0.24
10 19 0.56
11 7 0.21
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AATAAAAATT
Found at i:113103990 original size:19 final size:19
Alignment explanation
Indices: 113103968--113104026 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 19
113103958 ATAGAAAAGG
113103968 AATTATAAAAATTGTAAAA
1 AATTATAAAAATTGTAAAA
*
113103987 AATTATAAAAAATGTAAAGA
1 AATTATAAAAATTGTAAA-A
113104007 AA-TAT-AAAATTCGTAAAA
1 AATTATAAAAATT-GTAAAA
113104025 AA
1 AA
113104027 AAACTATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
18 8 0.22
19 25 0.69
20 3 0.08
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (19 bp):
AATTATAAAAATTGTAAAA
Found at i:113107026 original size:21 final size:20
Alignment explanation
Indices: 113107000--113107091 Score: 64
Period size: 21 Copynumber: 4.5 Consensus size: 20
113106990 ATATAAAATA
113107000 TATTTTTTATAAATTCTTTAC
1 TATTTTTTATAAATT-TTTAC
*
113107021 TATTTTTTATATAA--TTT-G
1 TATTTTTTATA-AATTTTTAC
** * *
113107039 TGGTTTTTATAATTTCTTTTC
1 TATTTTTTATAAATT-TTTAC
* *
113107060 TATTTTTAATAAATTTTTAA
1 TATTTTTTATAAATTTTTAC
113107080 TATTTTTCTATA
1 TATTTTT-TATA
113107092 CATTGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
17 1 0.02
18 9 0.17
19 3 0.06
20 13 0.25
21 25 0.47
22 2 0.04
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (20 bp):
TATTTTTTATAAATTTTTAC
Found at i:113107026 original size:38 final size:39
Alignment explanation
Indices: 113106984--113107072 Score: 103
Period size: 39 Copynumber: 2.3 Consensus size: 39
113106974 TTTTTTTAAA
113106984 ATTTTTATATAAAATATAT-TTTTTATAAATTCTTTACT
1 ATTTTTATATAAAATATATGTTTTTATAAATTCTTTACT
* * * * *
113107022 ATTTTT-TATATAATTTGTGGTTTTTATAATTTCTTTTCT
1 ATTTTTATATAAAATATAT-GTTTTTATAAATTCTTTACT
113107061 ATTTTTA-ATAAA
1 ATTTTTATATAAA
113107073 TTTTTAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
37 9 0.21
38 6 0.14
39 27 0.64
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.61
Consensus pattern (39 bp):
ATTTTTATATAAAATATATGTTTTTATAAATTCTTTACT
Found at i:113108304 original size:3 final size:3
Alignment explanation
Indices: 113108296--113108322 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
113108286 AATAGTTGAA
113108296 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
113108323 TCTGTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:113110871 original size:2 final size:2
Alignment explanation
Indices: 113110864--113110895 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
113110854 TTCAACAACG
113110864 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
113110896 ACGGTAGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:113125274 original size:337 final size:334
Alignment explanation
Indices: 113124653--113125310 Score: 1010
Period size: 337 Copynumber: 2.0 Consensus size: 334
113124643 AAATTACTCT
* *
113124653 AAATTAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAAT
1 AAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAAA
* *
113124718 GTTATAGATCATTTGGTGAGTAAGAAGGTATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATT
66 GTTATAGATCATTTGGTGACTAAGAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATT
* *
113124783 ACAATAATGAAATTTATGTTGCTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATTTATTTTAA
131 ACAATAATGAAATTTATGTTGCTAAAAAAAACACCTAAATAAGCTAGTCTTGAAATTTATTTTAA
* * * ** * *
113124848 CAAATCAAAGTGGTGCAATGGAAGTGTGGTGGGCCCATAACCCATAGGTTCCAAGATCGAAACTT
196 CAAATCAAAGTGGCGCAACGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAACTT
* * *
113124913 GGATTTGATAATTTTGAAAAAGTTTTTCTTGATTTTTTAAATTCTTATCAAAACGTGGGCTAGCT
261 GGATCTGATAATTTTGAAAAAGTTTTTCTTAACTTTTTAAATTCTTATCAAAACGTGGGCTAGCT
113124978 TGATTTTTG
326 TGATTTTTG
* * * *
113124987 AAATCAGAGTTGATGGATAATTAACTTGTGGCGTATATATTAATATTAATTTGAAAACGAAAAAA
1 AAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAG-AAAAA
* *
113125052 AGTTATAGATCATTTGGTGACTAATAAGGGATGGCAGGTGAGCATTGAGGTTTTAGGGGATGCAT
65 AGTTATAGATCATTTGGTGACTAAGAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCAT
* *
113125117 TACAATAGTGAACTTTATGTTGCTAAAAAAGGAACACCTAAATAAGCTAGTCTTGAAATTTATTT
130 TACAATAATGAAATTTATGTTGCTAAAAAA--AACACCTAAATAAGCTAGTCTTGAAATTTATTT
* * *
113125182 TGACAAATCAGAGTGGCGCAGCGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAA
193 TAACAAATCAAAGTGGCGCAACGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAA
* * * *
113125247 CTTGGCTCTGATAATTTTGAGAAAGTTTTTCTTAACTTTTTAAATTCTTCTCAAAATGTGGGCT
258 CTTGGATCTGATAATTTTGAAAAAGTTTTTCTTAACTTTTTAAATTCTTATCAAAACGTGGGCT
113125311 GAGTAGTGTA
Statistics
Matches: 290, Mismatches: 31, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
334 54 0.19
335 92 0.32
337 144 0.50
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (334 bp):
AAATCAGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAAA
GTTATAGATCATTTGGTGACTAAGAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATT
ACAATAATGAAATTTATGTTGCTAAAAAAAACACCTAAATAAGCTAGTCTTGAAATTTATTTTAA
CAAATCAAAGTGGCGCAACGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAACTT
GGATCTGATAATTTTGAAAAAGTTTTTCTTAACTTTTTAAATTCTTATCAAAACGTGGGCTAGCT
TGATTTTTG
Found at i:113126332 original size:140 final size:140
Alignment explanation
Indices: 113126070--113126753 Score: 599
Period size: 131 Copynumber: 5.1 Consensus size: 140
113126060 CAAAACAGTG
* * * * * *
113126070 CTAAGATGACAGTTATGGGGTAACACTTTTCTAAGTGTTGCGGTAGACTGGCCAACATACGTTTT
1 CTAAGACGACATTTATGGGGCAACACTTTCCTAAGTGTTGCGATAGACTGGCCAACATACGCTTT
* * *
113126135 CGGAAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAATTAAGAGTTGGCT
66 CGGCAACTATTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCT
*
113126200 TTGTCTAGTC
131 TTGTGTAGTC
* * * *
113126210 CTAAGACGACATTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTGGCCAACATATGCTGT
1 CTAAGACGACATTTATGGGGCAACACTTTCCTAAGTGTTGCGATAGACTGGCCAACATACGCTTT
* * * *
113126275 CGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGGTTAAATAAGAGTTGG-T
66 CGGCAACTATTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCT
113126339 GTTGTGTAGTC
131 -TTGTGTAGTC
*
113126350 CTAAGACGACACTTT-TGGGGCAACACTTTCCTAAGTGTTG-GA-ATA-T-----AC-TACGCTT
1 CTAAGACGACA-TTTATGGGGCAACACTTTCCTAAGTGTTGCGATAGACTGGCCAACATACGCTT
* * ** *
113126405 TCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGAATAAGAGTTGGC
65 TCGGCAACTATTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGC
113126470 TTTTGTGTAGTC
130 -TTTGTGTAGTC
* * * * *
113126482 ATAAGAC-ACATTTTTGTGGCGACACTTTCCTAAGTGTTG-G---GA-T---AAAC-TACGCTTT
1 CTAAGACGACATTTATGGGGCAACACTTTCCTAAGTGTTGCGATAGACTGGCCAACATACGCTTT
* * * ** ** *
113126537 -GGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAGGAGTTAGAG
66 CGGCAACTATTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTT-G-G
113126601 -TTTGTGTAGTC
129 CTTTGTGTAGTC
* * *
113126612 CTAGGACGACACTTT-TGTGGCGACACTTTCCTAAGTGTTGC-ATAGACT-------AT--GCTT
1 CTAAGACGACA-TTTATGGGGCAACACTTTCCTAAGTGTTGCGATAGACTGGCCAACATACGCTT
* * * * * * * ** *
113126666 TCGTCAACTCTTTATATAAGGGTTGGGATTTGTATGCCTAAGGCAATACTTGAATAAGAGTTGGT
65 TCGGCAACTATTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-
*
113126731 TTTTGTGTAGTC
129 CTTTGTGTAGTC
*
113126743 CTAAGATGACA
1 CTAAGACGACA
113126754 CTCTGCGCTT
Statistics
Matches: 474, Mismatches: 50, Indels: 49
0.83 0.09 0.09
Matches are distributed among these distances:
129 3 0.01
130 80 0.17
131 198 0.42
132 23 0.05
133 1 0.00
134 2 0.00
135 1 0.00
137 1 0.00
138 2 0.00
139 3 0.01
140 157 0.33
141 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (140 bp):
CTAAGACGACATTTATGGGGCAACACTTTCCTAAGTGTTGCGATAGACTGGCCAACATACGCTTT
CGGCAACTATTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCT
TTGTGTAGTC
Found at i:113126596 original size:130 final size:131
Alignment explanation
Indices: 113126274--113126755 Score: 621
Period size: 131 Copynumber: 3.7 Consensus size: 131
113126264 ACATATGCTG
* * * * * * *
113126274 TCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGGTTAAATAAGAGTTGGT
1 TCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGT
* * * *
113126339 GTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAATATACTACGCT
66 TTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGAATAAACTACGCT
113126404 T
131 T
* * * *
113126405 TCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGAATAAGAGTTGGC
1 TCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG-
* * *
113126470 TTTTGTGTAGTCATAAGAC-ACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGC
65 TTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGAATAAACTACGC
113126534 TT
130 TT
* * *
113126536 T-GGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAGGAGTTAGA
1 TCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTT-G-
* * * *
113126600 G-TTTGTGTAGTCCTAGGACGACACTTTTGTGGCGACACTTTCCTAAGTGTT-GCATAGACTATG
64 GTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGAATAAACTACG
113126663 CTT
129 CTT
* * * **
113126666 TCGTCAACTCTTTATATAAGGGTTGGGATTTGTATGCCTAAGGCAATACTTGAATAAGAGTTGGT
1 TCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG-
*
113126731 TTTTGTGTAGTCCTAAGATGACACT
65 TTTTGTGTAGTCCTAAGACGACACT
113126756 CTGCGCTTTC
Statistics
Matches: 307, Mismatches: 37, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
129 1 0.00
130 85 0.28
131 203 0.66
132 18 0.06
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (131 bp):
TCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGT
TTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGAATAAACTACGCT
T
Found at i:113126720 original size:261 final size:261
Alignment explanation
Indices: 113126139--113126748 Score: 706
Period size: 261 Copynumber: 2.3 Consensus size: 261
113126129 CGTTTTCGGA
* * * * *
113126139 AACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTT-AATTAAGAGTTGGC-TTT
1 AACTATTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAA-TAAGAGTTGGCTTTT
* * * * * * *
113126202 GTCTAGTCCTAAGACGACATTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTGGCCAACA
65 GTGTAGTCATAAGAC-ACATTTTTGTGGCGACACTTTCCTAAGTGTTG-G---GA-T---AAAC-
* * * * *
113126267 TATGCTGTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGGTTAAATAAG
120 TACGCT-TTGGCAACTCTTTATATAAGGGTTGCGATAAGCATGCCTAAAGCAACGCTTAAATAAG
*
113126332 AGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAATATA
184 AGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAATAGA
113126397 CTACGCTTTCGCC
249 CTACGCTTTCGCC
* * *
113126410 AACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGAATAAGAGTTGGCTTTTG
1 AACTATTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTTG
113126475 TGTAGTCATAAGACACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGC
66 TGTAGTCATAAGACACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGC
* * ** ** *
113126540 AACTCTTTATATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAGGAGTTAGAGT-TT
131 AACTCTTTATATAAGGGTTGCGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTT-G-GTGTT
* * * * *
113126604 GTGTAGTCCTAGGACGACACTTTTGTGGCGACACTTTCCTAAGTGTT-GCATAGACTATGCTTTC
194 GTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAATAGACTACGCTTTC
*
113126668 GTC
259 GCC
* * * * *
113126671 AACTCTTTATATAAGGGTTGGGATTTGTATGCCTAAGGCAATACTTGAATAAGAGTTGGTTTTTG
1 AACTATTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTTG
*
113126736 TGTAGTCCTAAGA
66 TGTAGTCATAAGA
113126749 TGACACTCTG
Statistics
Matches: 296, Mismatches: 39, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
261 136 0.46
262 52 0.18
263 5 0.02
266 1 0.00
267 2 0.01
270 1 0.00
271 81 0.27
272 18 0.06
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (261 bp):
AACTATTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTTG
TGTAGTCATAAGACACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGC
AACTCTTTATATAAGGGTTGCGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGTGTTGT
GTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGAATAGACTACGCTTTCGC
C
Found at i:113126833 original size:98 final size:98
Alignment explanation
Indices: 113126662--113126846 Score: 271
Period size: 98 Copynumber: 1.9 Consensus size: 98
113126652 CATAGACTAT
* * * * *
113126662 GCTTTCGTCAACTCTTTATATAAGGGTTGGGATTTGTATGCCTAAGGCAATACTTGAATAAGAGT
1 GCTTTCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAACAAGAGT
* *
113126727 TGGTTTTTGTGTAGTCCTAAGATGACACTCTGC
66 TGGCTTTTGTCTAGTCCTAAGATGACACTCTGC
* * * *
113126760 GCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGAGCAAGAGT
1 GCTTTCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAACAAGAGT
113126825 TGGCTTTTGTCTAGTCCTAAGA
66 TGGCTTTTGTCTAGTCCTAAGA
113126847 CTACAGTTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
98 76 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (98 bp):
GCTTTCGGCAACTCTTTATATAAGGGTTGCGATATGTATGCCTAAGGCAACACTTGAACAAGAGT
TGGCTTTTGTCTAGTCCTAAGATGACACTCTGC
Found at i:113127140 original size:7 final size:7
Alignment explanation
Indices: 113127128--113127280 Score: 50
Period size: 7 Copynumber: 21.7 Consensus size: 7
113127118 TTTAGGTTAG
113127128 GGTTTAA
1 GGTTTAA
113127135 GGTTT-A
1 GGTTTAA
113127141 GTGTTT-A
1 G-GTTTAA
113127148 GAGTTTAA
1 G-GTTTAA
*
113127156 GGTTTAG
1 GGTTTAA
*
113127163 GGATTATA
1 GGTTTA-A
*
113127171 -G-TTAT
1 GGTTTAA
*
113127176 GGTTTAT
1 GGTTTAA
*
113127183 GGTGTAA
1 GGTTTAA
*
113127190 GGTTTTAG
1 GG-TTTAA
*
113127198 GGTTT-T
1 GGTTTAA
*
113127204 GTGTTTATG
1 G-GTTTA-A
**
113127213 GGTTTGG
1 GGTTTAA
113127220 GGTTTAA
1 GGTTTAA
* *
113127227 GATTTTA
1 GGTTTAA
113127234 GAG-TTAA
1 G-GTTTAA
*
113127241 GGTTTAG
1 GGTTTAA
*
113127248 GGTTTAG
1 GGTTTAA
*
113127255 GGTTTAG
1 GGTTTAA
113127262 GGTTT-A
1 GGTTTAA
113127268 GGTTTTAA
1 GG-TTTAA
113127276 GGTTT
1 GGTTT
113127281 TTTTAACATA
Statistics
Matches: 113, Mismatches: 20, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
6 10 0.09
7 88 0.78
8 14 0.12
9 1 0.01
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:113127258 original size:14 final size:14
Alignment explanation
Indices: 113127124--113127280 Score: 93
Period size: 14 Copynumber: 11.1 Consensus size: 14
113127114 TCAATTTAGG
*
113127124 TTAGGGTTTAAGGT
1 TTAGGGTTTAGGGT
* *
113127138 TTAGTGTTTAGAGT
1 TTAGGGTTTAGGGT
* *
113127152 TTAAGGTTTAGGGA
1 TTAGGGTTTAGGGT
** *
113127166 TTATAG-TTATGGT
1 TTAGGGTTTAGGGT
* * *
113127179 TTATGGTGTAAGGTT
1 TTAGGGT-TTAGGGT
* *
113127194 TTAGGGTTTTGTGT
1 TTAGGGTTTAGGGT
*
113127208 TTATGGGTTTGGGGT
1 TTA-GGGTTTAGGGT
** *
113127223 TTAAGATTTTAGAG-
1 TT-AGGGTTTAGGGT
*
113127237 TTAAGGTTTAGGGT
1 TTAGGGTTTAGGGT
113127251 TTAGGGTTTAGGGT
1 TTAGGGTTTAGGGT
* *
113127265 TTAGGTTTTAAGGT
1 TTAGGGTTTAGGGT
113127279 TT
1 TT
113127281 TTTTAACATA
Statistics
Matches: 105, Mismatches: 33, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
13 17 0.16
14 60 0.57
15 27 0.26
16 1 0.01
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (14 bp):
TTAGGGTTTAGGGT
Found at i:113127274 original size:21 final size:21
Alignment explanation
Indices: 113127124--113127280 Score: 79
Period size: 21 Copynumber: 7.4 Consensus size: 21
113127114 TCAATTTAGG
113127124 TTAGGGTTTAAGGTTTA-GTGT
1 TTAGGGTTTAAGGTTTAGGT-T
* **
113127145 TTAGAGTTTAAGGTTTAGGGA
1 TTAGGGTTTAAGGTTTAGGTT
** * *
113127166 TTATAG-TTATGGTTTATGGTG
1 TTAGGGTTTAAGGTTTA-GGTT
* * * *
113127187 TAAGGTTTTAGGGTTT-TGTGT
1 TTAGGGTTTAAGGTTTAGGT-T
** *
113127208 TTATGGGTTTGGGGTTTAAGATT
1 TTA-GGGTTTAAGGTTT-AGGTT
* *
113127231 TTAGAG-TTAAGGTTTAGGGT
1 TTAGGGTTTAAGGTTTAGGTT
*
113127251 TTAGGGTTTAGGGTTTAGGTT
1 TTAGGGTTTAAGGTTTAGGTT
*
113127272 TTAAGGTTT
1 TTAGGGTTT
113127281 TTTTAACATA
Statistics
Matches: 100, Mismatches: 28, Indels: 16
0.69 0.19 0.11
Matches are distributed among these distances:
20 19 0.19
21 54 0.54
22 22 0.22
23 4 0.04
24 1 0.01
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (21 bp):
TTAGGGTTTAAGGTTTAGGTT
Found at i:113127977 original size:22 final size:21
Alignment explanation
Indices: 113127952--113128007 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
113127942 TCAAAAAATT
113127952 TATAAAATAAAAATAGAAAAAA
1 TATAAAATAAAAAT-GAAAAAA
***
113127974 TATATGTTAAAAATGAAAAAA
1 TATAAAATAAAAATGAAAAAA
*
113127995 -ATTAAAACAAAAA
1 TA-TAAAATAAAAA
113128008 CTTTTAGTAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
20 1 0.04
21 14 0.54
22 11 0.42
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (21 bp):
TATAAAATAAAAATGAAAAAA
Found at i:113128686 original size:35 final size:35
Alignment explanation
Indices: 113128594--113128679 Score: 129
Period size: 35 Copynumber: 2.5 Consensus size: 35
113128584 GCAAACCTAT
* *
113128594 TGCATCTGCCGTCCACTGCCTGCCCTAGCCACCGG
1 TGCATCTGACGTCCACTGCCTGCCCCAGCCACCGG
113128629 TGCATCT-ACAGTCCACTGCCTGCCCCAGCCACCGG
1 TGCATCTGAC-GTCCACTGCCTGCCCCAGCCACCGG
*
113128664 TGCATCTGTCGTCCAC
1 TGCATCTGACGTCCAC
113128680 CACCTGCTCC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
34 1 0.02
35 44 0.96
36 1 0.02
ACGTcount: A:0.14, C:0.44, G:0.21, T:0.21
Consensus pattern (35 bp):
TGCATCTGACGTCCACTGCCTGCCCCAGCCACCGG
Found at i:113130059 original size:5 final size:5
Alignment explanation
Indices: 113130049--113130080 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
113130039 AATTGTGTGA
113130049 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
113130081 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:113130074 original size:9 final size:9
Alignment explanation
Indices: 113130050--113130080 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
113130040 ATTGTGTGAA
113130050 AAATAAAAT
1 AAATAAAAT
113130059 AAAATAAAAT
1 -AAATAAAAT
113130069 AAATAAAAT
1 AAATAAAAT
113130078 AAA
1 AAA
113130081 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:113134507 original size:5 final size:5
Alignment explanation
Indices: 113134497--113134528 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
113134487 CAATTTGTGA
113134497 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
113134529 GAACACAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:113134522 original size:9 final size:9
Alignment explanation
Indices: 113134498--113134528 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
113134488 AATTTGTGAA
113134498 AAATAAAAT
1 AAATAAAAT
113134507 AAAATAAAAT
1 -AAATAAAAT
113134517 AAATAAAAT
1 AAATAAAAT
113134526 AAA
1 AAA
113134529 GAACACAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:113145635 original size:74 final size:75
Alignment explanation
Indices: 113145552--113145703 Score: 204
Period size: 75 Copynumber: 2.0 Consensus size: 75
113145542 CAGTTGTCTC
* * * *
113145552 ATAATTTTTTTG-TGTCATG-GGAATCAAGTTGACAACATGTT-GCAA-TGTGTTGATTGCTTTT
1 ATAA-TTTTTTGATGTCATGTGAAAT-AAGTTGACAACATGTTCGCAACT-TGTTGACTACTTCT
113145613 ATTAGGATTTTGT
63 ATTAGGATTTTGT
*
113145626 ATAATTTTTTGATGTCATGTGAAATAGGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
1 ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
113145691 AGGATTTTGT
66 AGGATTTTGT
113145701 ATA
1 ATA
113145704 TAAATTACTA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
73 7 0.10
74 26 0.38
75 35 0.51
76 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
AGGATTTTGT
Found at i:113146041 original size:35 final size:34
Alignment explanation
Indices: 113145894--113146536 Score: 159
Period size: 35 Copynumber: 17.7 Consensus size: 34
113145884 GAGACAAAGA
* * * *
113145894 TCTATCCCAACCTTTTTAAGTTTGCCTTAGACGGG
1 TCTATCGCAACCTTTTTAAGGTTG-CTTAAACAGG
* * * * *
113145929 TTTA-CCCTAACCATTTTAAGGTTGCTTTAGACGGG
1 TCTATCGC-AACCTTTTTAAGGTTGC-TTAAACAGG
* * *
113145964 TTTATCCCAACTTTTTTTAA-GTTGCCTTGGAAA-AGG
1 TCTATCGCAAC-CTTTTTAAGGTTG-CTT--AAACAGG
* * *
113146000 TATATCGCAACCTTTTTAGGGTTGCTGTAAACGGG
1 TCTATCGCAACCTTTTTAAGGTTGCT-TAAACAGG
** ** *
113146035 TCTATCGCAAAATTTTTAACATTGTCTTAGACAGG
1 TCTATCGCAACCTTTTTAAGGTTG-CTTAAACAGG
* * * *
113146070 TCAATTGCAACCTTTTCTAAAAGTTGCCTTAAACAAGA
1 TCTATCGCAACCTTTT-T-AAGGTTG-CTTAAAC-AGG
* * * *
113146108 TCTATTGCAACCTTTTTAGGGTTACCTTAAAC-GAA
1 TCTATCGCAACCTTTTTAAGGTT-GCTTAAACAG-G
* * *
113146143 TCTATCACCAACCTTTTTAAGGTTGCTTTAGACAAG
1 TCTATC-GCAACCTTTTTAAGGTTGC-TTAAACAGG
* * *
113146179 TCTATCCCAACCTTTTTTTAAGGTTGCCATAGACAAGG
1 TCTATCGCAACC--TTTTTAAGGTTG-CTTAAAC-AGG
* * * * * * *
113146217 TCTATTGTAACATTTTTAAAATGTTGCCGTAGATAGG
1 TCTATCGCAACCTTTTT--AAGGTTG-CTTAAACAGG
* * *
113146254 CCTATCGCAACCTTTTTTCAAGGTTGCCGTAAACAAGA
1 TCTATCGCAACC-TTTTT-AAGGTTG-CTTAAAC-AGG
* * * * *
113146292 TATACCACAACTTTTTTAAAAGGTTGCCGTAGATA-AGG
1 TCTATCGCAACCTTTTT--AAGGTTG-CTTA-A-ACAGG
* ** *
113146330 TCTATAGCAATTTTTATTAAGGGTTGTCGTAAACAAGG
1 TCTATCGCAACCTTT-TTAA-GGTTG-CTTAAAC-AGG
* ** *
113146368 -CTTCTCGCAACCTTTTTAAGGTTGCCGAAA-ATGAA
1 TC-TATCGCAACCTTTTTAAGGTTGCTTAAACA-G-G
* * * *
113146403 TCTATAC-CAATCTTTTTAACGTTGCTCTCAACAAG
1 TCTAT-CGCAACCTTTTTAAGGTTGCT-TAAACAGG
* * **
113146438 TCTATCACAACCATTTTTAACAGTTGTCTTAAATTGG
1 TCTATCGCAACC-TTTTTAA-GGTTG-CTTAAACAGG
* * * * *
113146475 TCTATCGCAACCCTGTTATGGTTGTATTAAACGGG
1 TCTATCGCAACCTTTTTAAGGTTG-CTTAAACAGG
*
113146510 TCTATCGCAATCTTTTTCAAAGGTTGC
1 TCTATCGCAACCTTTTT--AAGGTTGC
113146537 CCTTAACTAG
Statistics
Matches: 456, Mismatches: 105, Indels: 93
0.70 0.16 0.14
Matches are distributed among these distances:
33 1 0.00
34 10 0.02
35 155 0.34
36 92 0.20
37 93 0.20
38 101 0.22
39 3 0.01
40 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (34 bp):
TCTATCGCAACCTTTTTAAGGTTGCTTAAACAGG
Found at i:113146155 original size:36 final size:35
Alignment explanation
Indices: 113146077--113146195 Score: 114
Period size: 36 Copynumber: 3.3 Consensus size: 35
113146067 AGGTCAATTG
* * **
113146077 CAACCTTTTCTAAAAGTTGCCTTAAACAAGATCTATTG
1 CAACCTTTT-T-AAGGTTACCTTAAACAAG-TCTATCC
*
113146115 CAACCTTTTTAGGGTTACCTTAAACGAA-TCTATCAC
1 CAACCTTTTTAAGGTTACCTTAAAC-AAGTCTATC-C
* * *
113146151 CAACCTTTTTAAGGTTGCTTTAGACAAGTCTATCC
1 CAACCTTTTTAAGGTTACCTTAAACAAGTCTATCC
113146186 CAACCTTTTT
1 CAACCTTTTT
113146196 TTAAGGTTGC
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
35 18 0.26
36 39 0.57
37 3 0.04
38 9 0.13
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (35 bp):
CAACCTTTTTAAGGTTACCTTAAACAAGTCTATCC
Done.