Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 343 of 349
Found at i:113146196 original size:36 final size:35
Alignment explanation
Indices: 113145885--113146457 Score: 190
Period size: 35 Copynumber: 15.7 Consensus size: 35
113145875 ATAGAACATG
*
113145885 AGACAAAGATCTATCCCAACCTTTTTAAGTTTGCCTT
1 AGAC-AAG-TCTATCCCAACCTTTTTAAGGTTGCCTT
** * * *
113145922 AGACGGGTTTA-CCCTAACCATTTTAAGGTTGCTTT
1 AGACAAGTCTATCCC-AACCTTTTTAAGGTTGCCTT
** * *
113145957 AGACGGGTTTATCCCAACTTTTTTTAA-GTTGCCTT
1 AGACAAGTCTATCCCAAC-CTTTTTAAGGTTGCCTT
* * * * *
113145992 GGAAAAGGTATATCGCAACCTTTTTAGGGTTG-CTGT
1 AGACAA-GTCTATCCCAACCTTTTTAAGGTTGCCT-T
* ** * ** ** *
113146028 AAACGGGTCTATCGCAAAATTTTTAACATTGTCTT
1 AGACAAGTCTATCCCAACCTTTTTAAGGTTGCCTT
* * ** *
113146063 AGACAGGTCAATTGCAACCTTTTCTAAAAGTTGCCTT
1 AGACAAGTCTATCCCAACCTTTT-T-AAGGTTGCCTT
* ** * *
113146100 AAACAAGATCTATTGCAACCTTTTTAGGGTTACCTT
1 AGACAAG-TCTATCCCAACCTTTTTAAGGTTGCCTT
* *
113146136 AAACGAA-TCTATCACCAACCTTTTTAAGGTTGCTTT
1 AGAC-AAGTCTATC-CCAACCTTTTTAAGGTTGCCTT
*
113146172 AGACAAGTCTATCCCAACCTTTTTTTAAGGTTGCCAT
1 AGACAAGTCTATCCCAACC--TTTTTAAGGTTGCCTT
*** * * *
113146209 AGACAAGGTCTATTGTAACATTTTTAAAATGTTGCCGT
1 AGACAA-GTCTATCCCAACCTTTTT--AAGGTTGCCTT
* * * * *
113146247 AGATAGGCCTATCGCAACCTTTTTTCAAGGTTGCCGT
1 AGACAAGTCTATCCCAACC-TTTTT-AAGGTTGCCTT
* * * *
113146284 AAACAAG-ATATACCACAACTTTTTTAAAAGGTTGCCGT
1 AGACAAGTCTAT-CC-CAACCTTTTT--AAGGTTGCCTT
* ** ** * *
113146322 AGATAAGGTCTATAGCAATTTTTATTAAGGGTTGTCGT
1 AGACAA-GTCTATCCCAACCTTT-TTAA-GGTTGCCTT
* * **
113146360 AAACAAGGCT-TCTCGCAACCTTTTTAAGGTTGCCGA
1 AGACAAGTCTATC-C-CAACCTTTTTAAGGTTGCCTT
* * * * * *
113146396 AAATGAA-TCTATACCAATCTTTTTAACGTTGCTCTC
1 AGA-CAAGTCTATCCCAACCTTTTTAAGGTTGC-CTT
*
113146432 A-ACAAGTCTATCACAACCATTTTTAA
1 AGACAAGTCTATCCCAACC-TTTTTAA
113146458 CAGTTGTCTT
Statistics
Matches: 404, Mismatches: 99, Indels: 67
0.71 0.17 0.12
Matches are distributed among these distances:
34 5 0.01
35 127 0.31
36 99 0.25
37 81 0.20
38 86 0.21
39 3 0.01
40 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (35 bp):
AGACAAGTCTATCCCAACCTTTTTAAGGTTGCCTT
Found at i:113146203 original size:37 final size:37
Alignment explanation
Indices: 113146143--113146221 Score: 108
Period size: 37 Copynumber: 2.1 Consensus size: 37
113146133 CTTAAACGAA
**
113146143 TCTATCACCAACCTTTTTAAGGTTGCTTTAGACAA-G
1 TCTATCACCAACCTTTTTAAGGTTGCCATAGACAAGG
113146179 TCTATC-CCAACCTTTTTTTAAGGTTGCCATAGACAAGG
1 TCTATCACCAACC--TTTTTAAGGTTGCCATAGACAAGG
113146217 TCTAT
1 TCTAT
113146222 TGTAACATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 6 0.16
36 6 0.16
37 20 0.53
38 6 0.16
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.37
Consensus pattern (37 bp):
TCTATCACCAACCTTTTTAAGGTTGCCATAGACAAGG
Found at i:113146215 original size:109 final size:107
Alignment explanation
Indices: 113145937--113146234 Score: 296
Period size: 109 Copynumber: 2.8 Consensus size: 107
113145927 GGTTTACCCT
* * * * *
113145937 AACCATTTTAAGGTTGCTTTAGACGGGTTTATCCCAA-CTTTTTTTAAGTTGCCTTGGAAAAGGT
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTTAGACAAGGT
* * * ** *
113146001 ATATCGCAACCTTTTTAGGGTTGCTGTAAACGGGTCTATCGC
66 CTATTGCAACCTTTTTAGGGTTCCTGTAAACGAATCTATCCC
** ** * ** ** *
113146043 AAAATTTTTAACATTG-TCTTAGACAGGTCAATTGCAACCTTTTCTAAAAGTTGCCTTAAACAAG
1 AACCTTTTTAAGGTTGCT-TTAGACAGGTCTATCCCAACCTTTT-TTTAAGTTGCCTTAGACAAG
*
113146107 ATCTATTGCAACCTTTTTAGGGTTACCT-TAAACGAATCTATCACC
64 GTCTATTGCAACCTTTTTAGGGTT-CCTGTAAACGAATCTATC-CC
* *
113146152 AACCTTTTTAAGGTTGCTTTAGACAAGTCTATCCCAACCTTTTTTTAAGGTTGCCATAGACAAGG
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAA-GTTGCCTTAGACAAGG
* *
113146217 TCTATTGTAACATTTTTA
65 TCTATTGCAACCTTTTTA
113146235 AAATGTTGCC
Statistics
Matches: 148, Mismatches: 37, Indels: 11
0.76 0.19 0.06
Matches are distributed among these distances:
105 1 0.01
106 25 0.17
107 5 0.03
108 51 0.34
109 65 0.44
110 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (107 bp):
AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTTAGACAAGGT
CTATTGCAACCTTTTTAGGGTTCCTGTAAACGAATCTATCCC
Found at i:113146233 original size:38 final size:37
Alignment explanation
Indices: 113146156--113146334 Score: 101
Period size: 37 Copynumber: 4.8 Consensus size: 37
113146146 ATCACCAACC
** *
113146156 TTTTTAAGGTTGCTTTAGACAAGTCTATCCCAACCTT
1 TTTTTAAGGTTGCCATAGACAAGTCTATCCCAACATT
***
113146193 TTTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATT
1 TTTTTAAGGTTGCCATAGACAA-GTCTATCCCAACATT
** * * * * * * *
113146231 TTTAAAATGTTGCCGTAGATAGGCCTATCGCAACCTT
1 TTTTTAAGGTTGCCATAGACAAGTCTATCCCAACATT
* * * *
113146268 TTTTCAAGGTTGCCGTAAACAAG-ATATACCACAAC-TT
1 TTTTTAAGGTTGCCATAGACAAGTCTAT-CC-CAACATT
* * *
113146305 TTTTAAAAGGTTGCCGTAGATAAGGTCTAT
1 TTTT-TAAGGTTGCCATAGACAA-GTCTAT
113146335 AGCAATTTTT
Statistics
Matches: 108, Mismatches: 28, Indels: 9
0.74 0.19 0.06
Matches are distributed among these distances:
36 3 0.03
37 55 0.51
38 46 0.43
39 1 0.01
40 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (37 bp):
TTTTTAAGGTTGCCATAGACAAGTCTATCCCAACATT
Found at i:113146265 original size:75 final size:76
Alignment explanation
Indices: 113146180--113146366 Score: 191
Period size: 75 Copynumber: 2.5 Consensus size: 76
113146170 TTAGACAAGT
* * * * **** *
113146180 CTATCCCAACCTTTTTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATTTTTAAAATGTTGCC
1 CTATCGCAACCTTTTTTTAAGGTTGCCATAAACAAGATATACCACAACATTTTTAAAAGGTTGCC
113146245 GTAGAT-AGGC
66 GTAGATAAGGC
* * *
113146255 CTATCGCAACCTTTTTTCAAGGTTGCCGTAAACAAGATATACCACAACTTTTTTAAAAGGTTGCC
1 CTATCGCAACCTTTTTTTAAGGTTGCCATAAACAAGATATACCACAACATTTTTAAAAGGTTGCC
*
113146320 GTAGATAAGGT
66 GTAGATAAGGC
* * *
113146331 CTATAGCAA--TTTTTATTAAGGGTTGTCGTAAACAAG
1 CTATCGCAACCTTTTT-TTAA-GGTTGCCATAAACAAG
113146367 GCTTCTCGCA
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
74 5 0.05
75 62 0.67
76 26 0.28
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (76 bp):
CTATCGCAACCTTTTTTTAAGGTTGCCATAAACAAGATATACCACAACATTTTTAAAAGGTTGCC
GTAGATAAGGC
Found at i:113146280 original size:37 final size:38
Alignment explanation
Indices: 113146151--113146394 Score: 153
Period size: 38 Copynumber: 6.6 Consensus size: 38
113146141 AATCTATCAC
** * *
113146151 CAACC-TTTTT-AAGGTTGCTTTAGACAA-GTCTATCC
1 CAACCTTTTTTAAAGGTTGCCGTAGACAAGGCCTATCG
* * * *
113146186 CAACCTTTTTTTAAGGTTGCCATAGACAAGGTCTATTG
1 CAACCTTTTTTAAAGGTTGCCGTAGACAAGGCCTATCG
* * * * *
113146224 TAACATTTTTAAAATGTTGCCGTAGA-TAGGCCTATCG
1 CAACCTTTTTTAAAGGTTGCCGTAGACAAGGCCTATCG
* * *** * *
113146261 CAACCTTTTTTCAAGGTTGCCGTAAACAAGATATACCA
1 CAACCTTTTTTAAAGGTTGCCGTAGACAAGGCCTATCG
* * *
113146299 CAA-CTTTTTTAAAAGGTTGCCGTAGATAAGGTCTATAG
1 CAACCTTTTTT-AAAGGTTGCCGTAGACAAGGCCTATCG
* * * * * *
113146337 CAA-TTTTTATTAAGGGTTGTCGTAAACAAGGCTTCTCG
1 CAACCTTTT-TTAAAGGTTGCCGTAGACAAGGCCTATCG
113146375 CAACC-TTTTT-AAGGTTGCCG
1 CAACCTTTTTTAAAGGTTGCCG
113146395 AAAATGAATC
Statistics
Matches: 157, Mismatches: 45, Indels: 13
0.73 0.21 0.06
Matches are distributed among these distances:
35 5 0.03
36 13 0.08
37 52 0.33
38 85 0.54
39 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (38 bp):
CAACCTTTTTTAAAGGTTGCCGTAGACAAGGCCTATCG
Found at i:113146852 original size:23 final size:23
Alignment explanation
Indices: 113146811--113146876 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
113146801 GTTCACGAAC
* ** *
113146811 ACGAACATGTTTACAAACATTAA
1 ACGAACATGTTCATGAACATAAA
113146834 ACGAACATGTTCATGAACATAAA
1 ACGAACATGTTCATGAACATAAA
*
113146857 ATTGAACATGTTCATGAACA
1 A-CGAACATGTTCATGAACA
113146877 ATGTTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 20 0.54
24 17 0.46
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (23 bp):
ACGAACATGTTCATGAACATAAA
Found at i:113151512 original size:40 final size:40
Alignment explanation
Indices: 113151457--113151543 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
113151447 ATGAATTAGG
113151457 ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
1 ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
*
113151497 ATAATTAATTAGACACCATCCCTGTTTTGTGAGCAATGCA
1 ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
113151537 AT-ATTAA
1 ATAATTAA
113151544 ACTGACTCCA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 5 0.11
40 41 0.89
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (40 bp):
ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
Found at i:113155748 original size:24 final size:24
Alignment explanation
Indices: 113155692--113155742 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
113155682 TGTACATAGA
113155692 ATAATAATGCATGGATACAAAATT
1 ATAATAATGCATGGATACAAAATT
*
113155716 ATAATAATGCATGGATACAATATT
1 ATAATAATGCATGGATACAAAATT
113155740 ATA
1 ATA
113155743 TGAATGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (24 bp):
ATAATAATGCATGGATACAAAATT
Found at i:113156691 original size:21 final size:20
Alignment explanation
Indices: 113156638--113156691 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
113156628 CAATAACTTA
*
113156638 AAATATAAAATAATTTGAAAT
1 AAATAT-AAATAATTTGAAAG
*
113156659 AAATATATAATAATTTTTAAAG
1 AAATATA-AATAA-TTTGAAAG
*
113156681 AATTATAAATA
1 AAATATAAATA
113156692 TCTAAAAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.04
21 15 0.54
22 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
AAATATAAATAATTTGAAAG
Found at i:113162363 original size:17 final size:18
Alignment explanation
Indices: 113162331--113162373 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
113162321 TTTCACAGAT
*
113162331 TTAATAGTTTATATTA-AA
1 TTAATA-TTTACATTATAA
*
113162349 TTTATATTTACATTATAA
1 TTAATATTTACATTATAA
113162367 TTAATAT
1 TTAATAT
113162374 AAAAGCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
TTAATATTTACATTATAA
Found at i:113162686 original size:19 final size:19
Alignment explanation
Indices: 113162664--113162705 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
113162654 GATCTACCCC
113162664 TTCAAAGCAACAAAAAGTA
1 TTCAAAGCAACAAAAAGTA
113162683 TTCAAAGCAACAAAAAGTA
1 TTCAAAGCAACAAAAAGTA
113162702 TTCA
1 TTCA
113162706 TCAAATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.55, C:0.17, G:0.10, T:0.19
Consensus pattern (19 bp):
TTCAAAGCAACAAAAAGTA
Found at i:113170625 original size:13 final size:13
Alignment explanation
Indices: 113170607--113170638 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
113170597 TTTCCAGCAA
113170607 TTATGAATTTATT
1 TTATGAATTTATT
113170620 TTATGAATTTATT
1 TTATGAATTTATT
*
113170633 TGATGA
1 TTATGA
113170639 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:113170846 original size:50 final size:50
Alignment explanation
Indices: 113170733--113170974 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
113170723 ATTTGGGTAA
* * *
113170733 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
113170789 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113170839 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113170889 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
113170939 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
113170975 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:113170922 original size:100 final size:103
Alignment explanation
Indices: 113170733--113170982 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
113170723 ATTTGGGTAA
113170733 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
113170798 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
113170839 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
113170901 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
113170939 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
113170983 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:113172357 original size:30 final size:30
Alignment explanation
Indices: 113172321--113172409 Score: 162
Period size: 30 Copynumber: 3.0 Consensus size: 30
113172311 GCCTTTGCCA
113172321 CCACTAGCCACACTTGCTCCACCACCAACT
1 CCACTAGCCACACTTGCTCCACCACCAACT
*
113172351 CCACTAGCCACACTTGCTCCACCACCTACT
1 CCACTAGCCACACTTGCTCCACCACCAACT
113172381 CCACTAGCCACACTTGCTCCACCA-CAACT
1 CCACTAGCCACACTTGCTCCACCACCAACT
113172410 TGTACCTACA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
29 4 0.07
30 53 0.93
ACGTcount: A:0.26, C:0.49, G:0.07, T:0.18
Consensus pattern (30 bp):
CCACTAGCCACACTTGCTCCACCACCAACT
Found at i:113172992 original size:25 final size:25
Alignment explanation
Indices: 113172887--113173095 Score: 80
Period size: 23 Copynumber: 8.6 Consensus size: 25
113172877 TTTTGTTTGT
* *
113172887 TATTAT-TATAT-TTTTTAATATTA
1 TATTATGTATATATATTTAATACTA
** *
113172910 TATTA--TATATATATTCTTTTAATA
1 TATTATGTATATATATT-TAATACTA
* * * *
113172934 TATTAGGTATAT-T-CTAAATTCTA
1 TATTATGTATATATATTTAATACTA
*
113172957 TATTACGTATATATA-TT-ATACTA
1 TATTATGTATATATATTTAATACTA
* *
113172980 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATATTTAATACTA
* * * **
113173005 TATTATTTATATTTTTTTTTCTAAATGTTA
1 TATTATGTATA---TATATT-T-AATACTA
*
113173035 TCTTATGTATATAT-TTTAAT--TA
1 TATTATGTATATATATTTAATACTA
* * * *
113173057 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATATTTAATACTA
*
113173082 TATTATGTACATAT
1 TATTATGTATATAT
113173096 TTTTTTTATA
Statistics
Matches: 139, Mismatches: 31, Indels: 30
0.69 0.16 0.15
Matches are distributed among these distances:
22 19 0.14
23 43 0.31
24 18 0.13
25 31 0.22
26 7 0.05
27 2 0.01
28 4 0.03
29 1 0.01
30 14 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATTATGTATATATATTTAATACTA
Found at i:113173057 original size:22 final size:22
Alignment explanation
Indices: 113173032--113173098 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 22
113173022 TTTCTAAATG
*
113173032 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
113173054 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
113173079 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
113173099 TTTTATATCT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:113173085 original size:77 final size:79
Alignment explanation
Indices: 113172945--113173102 Score: 187
Period size: 77 Copynumber: 2.0 Consensus size: 79
113172935 ATTAGGTATA
* *
113172945 TTCTAAATTCTATATTACGTATATATATTATACTATTTTATGTATATATCTTTAATACTATATTA
1 TTCTAAATTCTATATTACGTATATATATTATACTATATTATGTATATATCTTTAACACTATATTA
* *
113173010 TTTATAT-TTTTTT
66 TGTACATATTTTTT
* * * * * * *
113173023 TTCTAAATGT-TATCTTATGTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATT
1 TTCTAAAT-TCTATATTACGTATATATATTATACTATATTATGTATATATCTTTAACACTATATT
113173086 ATGTACATATTTTTT
65 ATGTACATATTTTTT
113173101 TT
1 TT
113173103 ATATCTATTT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 33 0.49
78 33 0.49
79 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.58
Consensus pattern (79 bp):
TTCTAAATTCTATATTACGTATATATATTATACTATATTATGTATATATCTTTAACACTATATTA
TGTACATATTTTTT
Found at i:113173190 original size:25 final size:24
Alignment explanation
Indices: 113173162--113173217 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
113173152 GTTATATTTT
*
113173162 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
113173187 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
113173210 CACTATTA
1 CACTATTA
113173218 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:113185320 original size:14 final size:13
Alignment explanation
Indices: 113185298--113185341 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
113185288 CGCCGAGGTA
113185298 TTTTTAATTTCTG
1 TTTTTAATTTCTG
113185311 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
113185325 -CTTTAATTTCTG
1 TTTTTAATTTCTG
113185337 TTTTT
1 TTTTT
113185342 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 8 0.30
13 11 0.41
14 8 0.30
ACGTcount: A:0.14, C:0.11, G:0.07, T:0.68
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:113185332 original size:12 final size:13
Alignment explanation
Indices: 113185300--113185337 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
113185290 CCGAGGTATT
*
113185300 TTTAATTTCTGTT
1 TTTAATTTCTGTC
113185313 TTTCAATTTCTG-C
1 TTT-AATTTCTGTC
113185326 TTTAATTTCTGT
1 TTTAATTTCTGT
113185338 TTTTCAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 8 0.36
13 6 0.27
14 8 0.36
ACGTcount: A:0.16, C:0.13, G:0.08, T:0.63
Consensus pattern (13 bp):
TTTAATTTCTGTC
Found at i:113185416 original size:99 final size:98
Alignment explanation
Indices: 113185228--113185595 Score: 442
Period size: 99 Copynumber: 3.8 Consensus size: 98
113185218 AATTTCGTTT
* * *
113185228 TTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GGGCACGCC
1 TTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
*
113185292 GAGGTATTTTTAATTTCTGTTTTTCAATTTCTGC
66 GAGGTATTTTCAATTTCTGTTTTTCAATTT-TGC
* *
113185326 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGC
1 TTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGC
113185390 TGAGGTATTTTCAATTTCTGTTTTTCAATTTTTGCC
65 TGAGGTATTTTCAATTTCTGTTTTTCAA-TTTTG-C
* * *
113185426 TTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACG
1 TT-TAATTTATGCTTTTCAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCAGGACACG
*
113185489 CTGAGGTATTTTCAA-------TTTTC-GTTTT--
64 CTGAGGTATTTTCAATTTCTGTTTTTCAATTTTGC
* *
113185514 TTTAATTTATG-TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACG
1 TTTAATTTATGCTTT-T-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
113185578 CTGAGGTAATTTCAATTT
64 CTGAGGTATTTTCAATTT
113185596 TTTGTCAAAA
Statistics
Matches: 241, Mismatches: 15, Indels: 34
0.83 0.05 0.12
Matches are distributed among these distances:
86 3 0.01
87 7 0.03
88 2 0.01
89 37 0.15
90 20 0.08
91 4 0.02
93 5 0.02
98 52 0.22
99 56 0.23
100 43 0.18
101 12 0.05
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (98 bp):
TTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTATTTTCAATTTCTGTTTTTCAATTTTGC
Found at i:113185719 original size:73 final size:74
Alignment explanation
Indices: 113185512--113186330 Score: 1043
Period size: 73 Copynumber: 11.3 Consensus size: 74
113185502 AATTTTCGTT
* * * * * *
113185512 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
113185577 GCTGAGGTA
66 GCTGAGGTA
* * * *
113185586 ATTTCAA-TT-T-TTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
113185647 GTTGAGGTA
66 GCTGAGGTA
* *
113185656 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATA-GTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
113185720 GCTGAGGTA
66 GCTGAGGTA
* * *
113185729 ATTTCAATTTTTGTTTGTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
113185792 GTTGAGGTA
66 GCTGAGGTA
* * * *
113185801 -TTTCAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
113185865 GTTGAGGTA
66 GCTGAGGTA
* *
113185874 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--AC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
113185937 GCTGAGGTA
66 GCTGAGGTA
* * *
113185946 ATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
113186010 GTTGAGGTA
66 GCTGAGGTA
** * *
113186019 TTTTCAATTTCTGTTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
113186084 G-TGAGGTA
66 GCTGAGGTA
*
113186092 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGA-TGGTGAGTTGAGCCTCAAG--A
1 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
113186154 CGCTGAGGTA
65 CGCTGAGGTA
*
113186164 -TTTCAA-TTCTTGTTTGTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAAGACA
1 TTTTCAATTTC-TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
113186224 CGTTGAGGTA
65 CGCTGAGGTA
* * * *
113186234 TTTCATCAATTTTTTTTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG
1 TTT--TCAATTTCTGTT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
*
113186299 --ACGCTGAGGTG
62 ACACGCTGAGGTA
* * *
113186310 TTTTCCATTTTTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
113186331 TTTTTGTTTC
Statistics
Matches: 655, Mismatches: 64, Indels: 54
0.85 0.08 0.07
Matches are distributed among these distances:
68 26 0.04
69 11 0.02
70 68 0.10
71 98 0.15
72 65 0.10
73 177 0.27
74 161 0.25
76 12 0.02
77 31 0.05
78 6 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTA
Found at i:113185794 original size:145 final size:145
Alignment explanation
Indices: 113185512--113186324 Score: 1044
Period size: 145 Copynumber: 5.6 Consensus size: 145
113185502 AATTTTCGTT
* * * * *
113185512 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACAC
*
113185577 GCTGAGGTAATTTCAA--TTT-TTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCT
65 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
113185639 CAAGACACGTTGAGGTA
129 CAAGACACGTTGAGGTA
*
113185656 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATA-GTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACAC
113185720 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
113185785 AAGACACGTTGAGGTA
130 AAGACACGTTGAGGTA
* * * *
113185801 -TTTCAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACAC
* * * * * *
113185865 GTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACC
65 GCTGAGGTAATTTCAATTTTTGTTTGTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
113185930 TCAAG--ACGCTGAGGTA
128 TCAAGACACGTTGAGGTA
* * *
113185946 ATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACAC
* * * * * *
113186010 GTTGAGGTATTTTCAATTTCTGTTT-TAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAAC
65 GCTGAGGTAATTTCAATTTTTGTTTGT---CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
113186074 CTCAAGACACG-TGAGGTA
127 CTCAAGACACGTTGAGGTA
* *
113186092 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGA-TGGTGAGTTGAGCCTCA-AGAC
1 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC
*
113186155 GCTGAGGT-ATTTCAATTCTTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTC
65 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
113186218 AAGACACGTTGAGGTA
130 AAGACACGTTGAGGTA
* * * *
113186234 TTTCATCAATTTTTTTTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-A
1 TTT--TCAATTTCTGTT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
* ** *
113186298 GACGCTGAGGTGTTTTCCATTTTTGTT
62 CACGCTGAGGTAATTTCAATTTTTGTT
113186325 CTTCAATTTT
Statistics
Matches: 600, Mismatches: 47, Indels: 41
0.87 0.07 0.06
Matches are distributed among these distances:
141 11 0.02
142 41 0.07
143 37 0.06
144 100 0.17
145 246 0.41
146 76 0.13
147 68 0.11
148 21 0.04
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (145 bp):
TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACG
CTGAGGTAATTTCAATTTTTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTA
Found at i:113185908 original size:218 final size:217
Alignment explanation
Indices: 113185533--113186330 Score: 1231
Period size: 218 Copynumber: 3.7 Consensus size: 217
113185523 TGTTTCTAAA
* * * *
113185533 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
* * * * * *
113185597 -TTGT--CAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
66 GTTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTT
*
113185659 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGTGAGTTGAGCCTCAGGACACGCTG
131 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGTGAGTTGAGCCTCA--AGACGCTG
113185724 AGGTAATTTCAATTTTTGTTTGTC
194 AGGTAATTTCAATTTTTGTTTGTC
113185748 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
113185812 GTCTTT-AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
66 GT-TTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
*
113185876 TTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCTG
130 TTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATA-GTGAGTTGAGCCTCAAGACGCTG
113185941 AGGTAATTTCAATTTTTGTTTGTC
194 AGGTAATTTCAATTTTTGTTTGTC
113185965 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
113186030 TGTTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG-TGAGGTATT
65 TGTTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
*
113186094 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATGGTGAGTTGAGCCTCAAGACGCTG
130 TTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGATAGTGAGTTGAGCCTCAAGACGCTG
*
113186159 AGGT-ATTTCAATTCTTGTTTGTC
194 AGGTAATTTCAATTTTTGTTTGTC
113186182 AAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAAGACACGTTGAGGTATTTCATCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT--TCAA-TT
* * * *
113186246 TTTTTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGT
63 TCTGT-TTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGT
* * * *
113186309 GTTTTCCATTTTTGTTCTTCAA
127 ATTTTCAATTTCTGTTTTTCAA
113186331 TTTTTGTTTC
Statistics
Matches: 548, Mismatches: 21, Indels: 26
0.92 0.04 0.04
Matches are distributed among these distances:
214 9 0.02
215 73 0.13
216 34 0.06
217 60 0.11
218 228 0.42
219 144 0.26
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (217 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
GTTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTT
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGTGAGTTGAGCCTCAAGACGCTGAG
GTAATTTCAATTTTTGTTTGTC
Found at i:113186433 original size:15 final size:14
Alignment explanation
Indices: 113186397--113186429 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
113186387 CGCTGAGGTA
113186397 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
113186411 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
113186425 TTTTC
1 TTTTC
113186430 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:113186477 original size:87 final size:83
Alignment explanation
Indices: 113186246--113186490 Score: 258
Period size: 87 Copynumber: 2.8 Consensus size: 83
113186236 TCATCAATTT
* * * *
113186246 TTTTTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGT
1 TTTTTGTTTCCAAAAAATCAGCTCATATTGCGAGAGGTGAGTT-AGCCTC-AGACGCTGAGGTAT
* * *
113186311 TTTCCATTTTTGTTCTTCAA
64 TTTCAAATTCTGTTCTTCAA
* *
113186331 TTTTTGTTT-CAAAAAATCAGCTCATATTGCGAGTGGTGAGTTAGCCTTGACTCACACGCTGAGG
1 TTTTTGTTTCCAAAAAATCAGCTCATATTGCGAGAGGTGAGTTAG-C----CTCAGACGCTGAGG
*
113186395 TATTTTCAAATTCTGTTTTTCAAA
61 TATTTTCAAATTCTGTTCTTC-AA
* * * *
113186419 TTTTGTTTTTCCAAAAAATCAACTCATATTGAGAGAGGTGAGTTCAGCCTCAGGACGCTGAGATA
1 TTTT-TGTTTCCAAAAAATCAGCTCATATTGCGAGAGGTGAGTT-AGCCTCA-GACGCTGAGGTA
113186484 TTTTCAA
63 TTTTCAA
113186491 TTTTTTCAAA
Statistics
Matches: 134, Mismatches: 16, Indels: 18
0.80 0.10 0.11
Matches are distributed among these distances:
83 1 0.01
84 32 0.24
85 8 0.06
86 4 0.03
87 43 0.32
88 9 0.07
89 4 0.03
90 31 0.23
91 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (83 bp):
TTTTTGTTTCCAAAAAATCAGCTCATATTGCGAGAGGTGAGTTAGCCTCAGACGCTGAGGTATTT
TCAAATTCTGTTCTTCAA
Found at i:113197505 original size:19 final size:20
Alignment explanation
Indices: 113197467--113197507 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
113197457 TCTGAATAAT
113197467 TGGACTGCGGAAGACCTTCC
1 TGGACTGCGGAAGACCTTCC
113197487 TGGACTGCGGAAG-CCTTCC
1 TGGACTGCGGAAGACCTTCC
113197506 TG
1 TG
113197508 TAGTCTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (20 bp):
TGGACTGCGGAAGACCTTCC
Found at i:113202523 original size:205 final size:205
Alignment explanation
Indices: 113202170--113202616 Score: 813
Period size: 205 Copynumber: 2.2 Consensus size: 205
113202160 GACATAGCTA
113202170 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCA
1 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCA
113202235 GACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
66 GACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
*
113202300 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACAA
131 TGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACAA
113202365 ATCTAAGATG
196 ATCTAAGATG
*
113202375 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCGCTTTGATGGAGAGCA
1 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCA
* *
113202440 GACACATAGCGGATCTCGTCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
66 GACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
* **
113202505 TGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTATGAGAAGGCAA
131 TGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACAA
113202570 ATCTAAGATG
196 ATCTAAGATG
* *
113202580 ATTTGTCGTCTCTGTATCGTCAGGGAACAAATCGAAG
1 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
113202617 AAATAGATTT
Statistics
Matches: 233, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
205 233 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (205 bp):
ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCA
GACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
TGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACAA
ATCTAAGATG
Found at i:113202812 original size:132 final size:132
Alignment explanation
Indices: 113202651--113202933 Score: 421
Period size: 132 Copynumber: 2.2 Consensus size: 132
113202641 AGACGGGGGG
* *
113202651 CAGATCAAAGATAGCAGATATCGACTTCCTGA-G-TTACAGTGAAGCAGATCGAAGATTTCAGCA
1 CAGATCGAAGATAGCAGATCTCGACTTCCT-ATGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
113202714 TGGCATCCCTGTGCTTATAGGGAACAAGTGGAAAAACAGCAGATTTGGCAGCCCTGTGCTTATAG
65 TGGCATCCCTGTGCTTATAGGGAACAAGTGG-AAAACAGCAGATTTGGCAGCCCTGTGCTTATAG
113202779 GGAA
129 GGAA
*
113202783 CAGATCGAAGATAGCAGATCT-GACATTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCAGCG
1 CAGATCGAAGATAGCAGATCTCGAC-TTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
* * * * * * *
113202847 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGTTTATAGG
65 TGGCATCCCTGTGCTTATAGGGAACAAGTGGAAAACAGCAGATTTGGCAGCCCTGTGCTTATAGG
113202912 GAA
130 GAA
113202915 CAGATCGAAGA-AGCAGATC
1 CAGATCGAAGATAGCAGATC
113202934 GAAGAACTCA
Statistics
Matches: 138, Mismatches: 10, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
131 12 0.09
132 68 0.49
133 58 0.42
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (132 bp):
CAGATCGAAGATAGCAGATCTCGACTTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCAGCAT
GGCATCCCTGTGCTTATAGGGAACAAGTGGAAAACAGCAGATTTGGCAGCCCTGTGCTTATAGGG
AA
Found at i:113202818 original size:44 final size:44
Alignment explanation
Indices: 113202714--113202933 Score: 207
Period size: 44 Copynumber: 5.0 Consensus size: 44
113202704 GATTTCAGCA
* * * *
113202714 TGGCATCCCTGTGCTTATAGGGAACA-AGTGGAAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAGA-TCG-AAGATAGCAGATC
*
113202759 TGGCAGCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
* * * * * **
113202803 TGACATTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCAG--C
1 TGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAGATC
* * * *
113202846 GTGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGTAGATT
1 -TGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATC
*
113202891 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGA-AGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
113202934 GAAGAACTCA
Statistics
Matches: 141, Mismatches: 27, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 18 0.13
44 78 0.55
45 43 0.30
46 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
Found at i:113202933 original size:13 final size:13
Alignment explanation
Indices: 113202915--113202939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113202905 TTATAGGGAA
113202915 CAGATCGAAGAAG
1 CAGATCGAAGAAG
113202928 CAGATCGAAGAA
1 CAGATCGAAGAA
113202940 CTCAAAACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (13 bp):
CAGATCGAAGAAG
Found at i:113204091 original size:40 final size:39
Alignment explanation
Indices: 113204047--113204160 Score: 185
Period size: 40 Copynumber: 2.9 Consensus size: 39
113204037 ATAAAGTATG
113204047 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAATA
113204087 GTTTTAATTAATAATGAAAACAAAATAGTAT-GGGGAATA
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAATA
* *
113204126 GTTTTAATTAATAATAAAACAAAGTAGCATGGGGG
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGG
113204161 GAGTGGAATC
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
38 13 0.19
39 27 0.39
40 30 0.43
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAATA
Found at i:113205822 original size:20 final size:21
Alignment explanation
Indices: 113205797--113205835 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
113205787 CTCCCGTTTT
*
113205797 CATTTTTTAAAA-TCGATTCC
1 CATTTTCTAAAACTCGATTCC
113205817 CATTTTCTAAAACTCGATT
1 CATTTTCTAAAACTCGATT
113205836 TGAAAATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (21 bp):
CATTTTCTAAAACTCGATTCC
Found at i:113209836 original size:40 final size:40
Alignment explanation
Indices: 113209680--113209837 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 40
113209670 AAAAACGCCG
113209680 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGTCT
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACG-CT
**
113209721 CAAAAGGTAAAGCAATAGCGTTGTTTTTCTCATAAACGCT
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGCT
* **
113209761 GCAAAAGGTAAAGTAATAGTAGCGTTTTT-TCATAAACGCAT
1 -CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGC-T
* * *
113209802 -TAAAGGTAAAGCAATAGTGGCATTTTTC-CTATAAAC
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTC-ATAAAC
113209838 TTAGCAAATA
Statistics
Matches: 102, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 24 0.24
40 18 0.18
41 60 0.59
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (40 bp):
CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGCT
Found at i:113209867 original size:42 final size:42
Alignment explanation
Indices: 113209815--113209898 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
113209805 AGGTAAAGCA
*
113209815 ATAGTGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
1 ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
*
113209857 ATAGCGGCATTTTTCCTATAAACTTCGCAAATATTTTTTTAC
1 ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
113209899 TTTTATTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.44
Consensus pattern (42 bp):
ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
Found at i:113209977 original size:34 final size:35
Alignment explanation
Indices: 113209933--113209998 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
113209923 ATAGCCTTAG
*
113209933 TTTTTTCCTAAA-TTAGTTTCCCAAAACCCCTAAA
1 TTTTTCCCTAAATTTAGTTTCCCAAAACCCCTAAA
* * *
113209967 TTTTTCCCTAAATTTATTTTCCCTAAATCCCT
1 TTTTTCCCTAAATTTAGTTTCCCAAAACCCCT
113209999 TAGGTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 11 0.41
35 16 0.59
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.44
Consensus pattern (35 bp):
TTTTTCCCTAAATTTAGTTTCCCAAAACCCCTAAA
Found at i:113212912 original size:25 final size:26
Alignment explanation
Indices: 113212884--113212934 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
113212874 TTTTATAAAT
113212884 ATTATCATAAAAATAAATATT-TTTA
1 ATTATCATAAAAATAAATATTGTTTA
*
113212909 ATTATCATAAAGATAAATATTGTTTA
1 ATTATCATAAAAATAAATATTGTTTA
113212935 TCTATATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (26 bp):
ATTATCATAAAAATAAATATTGTTTA
Found at i:113213244 original size:13 final size:13
Alignment explanation
Indices: 113213228--113213254 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
113213218 TAATTAAAGG
113213228 GTTAAAATTTAAA
1 GTTAAAATTTAAA
113213241 GTTAAAATTTAAA
1 GTTAAAATTTAAA
113213254 G
1 G
113213255 ATGATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:113215402 original size:19 final size:20
Alignment explanation
Indices: 113215380--113215426 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
113215370 CCCCCCCCCC
113215380 AAAAAACCTAA-CCCCAAAA
1 AAAAAACCTAACCCCCAAAA
*
113215399 AAAAAACCTAACCCCCCAAA
1 AAAAAACCTAACCCCCAAAA
113215419 AAAAAACC
1 AAAAAACC
113215427 AAGAAACCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.62, C:0.34, G:0.00, T:0.04
Consensus pattern (20 bp):
AAAAAACCTAACCCCCAAAA
Found at i:113217922 original size:4 final size:4
Alignment explanation
Indices: 113217907--113217942 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
113217897 ATTCATTTGA
* *
113217907 CATT CATG CATT CATT CATG CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT
113217943 GCATATCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (4 bp):
CATT
Found at i:113217924 original size:12 final size:12
Alignment explanation
Indices: 113217907--113217942 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
113217897 ATTCATTTGA
113217907 CATTCATGCATT
1 CATTCATGCATT
113217919 CATTCATGCATT
1 CATTCATGCATT
*
113217931 CATTCATTCATT
1 CATTCATGCATT
113217943 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:113226355 original size:71 final size:72
Alignment explanation
Indices: 113226119--113227737 Score: 720
Period size: 82 Copynumber: 20.9 Consensus size: 72
113226109 TTTTCAAGGG
* * * * * *
113226119 AAATCAACTCATATTGCGAGAGATAAGTTGAGCCTCAAGACATGTTGAGGTATTTTAATTT-TAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTCAATTTCTGT
113226183 T-TC---A
65 TGTCAAAA
* * *
113226187 AAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTTTGT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTCAATTTCTGT
*
113226251 CTTTCAAAA
65 -TGTCAAAA
113226260 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTCAATTTCTGTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTCAATTTCTGTT
113226325 GTC-AAA
66 GTCAAAA
113226331 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--ACACGCTGAGG-----T--ATTTC
113226396 AATTTCTGTTGTCAAAA
56 AATTTCTGTTGTCAAAA
* *
113226413 AAATCAACTCGTATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--ACACGCTGAGGTA-TTTCAATTTC
* *
113226478 CGTTTTTCAATTTCTGCCTTTCAA
62 TG-TTGTCAA------------AA
** * * * * * ** * *
113226502 AAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
1 AAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CC-T--CAGACACGCTGAGGTA-TT
*
113226564 TCAATTTCTGTCTTTCAAAA
54 TCAATTTCTGT-TGTCAAAA
* * * * *
113226584 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTAAAGTATTTTTTTCAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---ACACGCTGAGGTA----TTTCAAT
*
113226649 TT-TGTT-T--TAA
59 TTCTGTTGTCAAAA
* * * *
113226659 AAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGAGTCAC-ATCGAGGTATTTTCAATCTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGACACGCT-GAGGTA-TTTCAA---TT
** ***
113226723 TCAATTAGT-TTCA
60 TCTGTT-GTCAAAA
** * *
113226736 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGCTCACGCGCTGA-GTAATTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT--CAGACACGCTGAGGTATTTCAATTTCTG
113226800 TT-TCAAAA
64 TTGTCAAAA
* *
113226808 AAATCAACTCGTATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAATCAACTC--ATATTGCGAGAGGTGAGTTGAGCCTCA-G--ACACGCTGAGGTA-TTTCAATT
* *
113226873 TCCGTTTTTCAATTTCTGCCTTTCAA
60 TCTG-TTGTCAA------------AA
** * *
113226899 AAA--AA-TCGACTCATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTAATTTCAAT
1 AAATCAACTC-A-T-ATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTGAGGT-ATTTCAAT
*
113226961 TTCTGTTTTC--AA
59 TTCTGTTGTCAAAA
* *
113226973 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAA--TCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGT-ATTTCAATTTCTG
*
113227036 TTTTC--AA
64 TTGTCAAAA
* ** * *
113227043 AATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGT-ATTTCAATTTCTG
*
113227108 TTTTC--AA
64 TTGTCAAAA
* ** *
113227115 AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTA-TTTCAATTTCTG
*
113227180 TTTTC-AAA
64 TTGTCAAAA
* * * *
113227188 AAATCAACTTATATTGCGAGAGGTGAGTTGAGTCTCGGTTCACATGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---ACACGCTGAGGTA-TTTCAATTTC
*
113227253 TGTCTTTCAAAA
62 TGT-TGTCAAAA
* * * *
113227265 AAATCAACCCATATTGTGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---ACACGCTGAGGTA------T--TT
* * *
113227330 CAATTTATATTTTTC--AA
55 CAATTTCT-GTTGTCAAAA
* * **
113227347 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTCAAAATC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGACAC-GCT-GAGGTA-TTTC--AAT-
* *
113227412 TTCTTTTCAAGTTAAGTTTCAA
59 TTCTGTT---GTCAA-----AA
* **
113227434 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTA-TTTCAATTTCTG
*
113227499 TCTTTCAAAA
64 T-TGTCAAAA
* *
113227509 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTTTTCCATTTGTTTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG---T--A-----TTTC
*
113227573 AATTTCTGTTTTCAAAA
56 AATTTCTGTTGTCAAAA
* **
113227590 AAATC-ACTCATATTGCGAG-TGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTGAGGTA-TTTC-AA---
*
113227653 GTTTTTCAAATTTGTTTTCAAAA
58 ---TTTC-----TGTTGTCAAAA
113227676 AAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGA-GTATTTTCAATTTCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTA-TTTCAATTTCT
113227738 TTTTTTTTTC
Statistics
Matches: 1249, Mismatches: 142, Indels: 316
0.73 0.08 0.19
Matches are distributed among these distances:
67 36 0.03
68 23 0.02
69 1 0.00
70 71 0.06
71 43 0.03
72 114 0.09
73 106 0.08
74 84 0.07
75 110 0.09
76 33 0.03
77 127 0.10
78 12 0.01
79 20 0.02
80 33 0.03
81 36 0.03
82 131 0.10
83 22 0.02
84 23 0.02
85 23 0.02
86 21 0.02
87 67 0.05
88 11 0.01
89 60 0.05
90 2 0.00
91 5 0.00
92 1 0.00
93 1 0.00
94 31 0.02
95 1 0.00
97 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (72 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTCAATTTCTGTT
GTCAAAA
Found at i:113226446 original size:82 final size:81
Alignment explanation
Indices: 113226310--113227736 Score: 930
Period size: 77 Copynumber: 18.1 Consensus size: 81
113226300 ACGCTGAGGT
*
113226310 ATTTCAATTTCTGTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 ATTTCAATTTCTGTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
113226374 ACGCTGAGGTATTTTCA
65 ACGCTGAGGTATTTTCA
* *
113226391 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGTGAGTTGAGCCTCAGGTCAC
1 ATTTCAATTTCTGTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
113226456 ACGCTGAGGTATTTTCA
65 ACGCTGAGGTATTTTCA
113226473 ATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 A--------TTTCAATTTCTG--TTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
113226538 GCCT-TGGCTCACGCGCTGAGCTATTTTCA
53 GCCTCAGG-TCACACGCTGAGGTATTTTCA
* * * *
113226567 ATTTC--TGTC--TTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACA
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
* * *
113226628 CACTAAAGTATTTT--
66 CGCTGAGGTATTTTCA
* * *
113226642 -TTTCAATTT-TGTTT--TAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGAGTCAC
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTCAC
*
113226702 A-TC-GAGGTATTTTCA
65 ACGCTGAGGTATTTTCA
*
113226717 ATCTTTTCAA-TT-AGTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT--GGCT
1 A---TTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-T
*
113226775 CACGCGCTGA-G-----T-A
62 CACACGCTGAGGTATTTTCA
*
113226788 A-TTCAATTTCTGTTTCAAAAAAATCAACTCGTATATTGCGAGAGGCGAGTTGAGCCTCAGGTCA
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTC--ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*
113226852 CACGCCGAGGTATTTTCA
64 CACGCTGAGGTATTTTCA
*
113226870 ATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCGACTC--ATTGCGAGAGGTGAGTTGAGCC
1 A--------TTTCAATTTCTG--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
113226933 T-TGGCTCACGCGCTGA-G----CT-A
56 TCAGG-TCACACGCTGAGGTATTTTCA
*
113226953 ATTTCAATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GAC
1 ATTTCAATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
113227014 ACGCTGAGG-----T-A
65 ACGCTGAGGTATTTTCA
* * * ** * *
113227025 ATTTCAATCTAT-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAG--ACA
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
*
113227085 CGTTGAGG-----T-A
66 CGCTGAGGTATTTTCA
* ** *
113227095 ATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--AC
1 ATTTCAATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
*
113227156 ACGTTGAGGTATTTTCA
65 ACGCTGAGGTATTTTCA
* * *
113227173 ATTTC----TGT-TTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGTCTC-GGTTCAC
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC
*
113227231 ATGCTGAGGTATTTTCA
65 ACGCTGAGGTATTTTCA
* * * * *
113227248 ATTTC--TGTC--TTTCAAAAAAATCAACCCATATTGTGAGAGGTGAGTTGAGCTTCAGATCACA
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
* *
113227309 CACTGAGGTATTTTTTTA
66 CGCTGAGGTA--TTTTCA
* * *** *
113227327 A-TTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGAGTCAC
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTCAC
**
113227390 A-TATCGAGGTATTTTCAAA
65 ACGCT-GAGGTATTTTC--A
* *
113227409 ATCTTC-TTTTCAAGTTAAGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
1 AT-TTCAATTTC----T--GTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* **
113227471 AG--ACACATTGAGGTATTTTCA
59 GGTCACACGCTGAGGTATTTTCA
* * *
113227492 ATTTC--TGTC--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA----AGA
1 ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
*
113227549 CGCTGAGGT-TTTCCA
66 CGCTGAGGTATTTTCA
* * *
113227564 TTTGTTTTCAATTTCTGTTTTCAAAAAAATC-ACTCATATTGCGAG-TGTGAGTTGAGCCT-TGA
1 ----ATTTCAATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
*
113227626 CTCACACGCTGAGGTATTTTCAA
60 GTCACACGCTGAGGTATTTTC-A
*
113227649 ATCTGTTTTTCAAATT-TGTTTTCAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCA
1 A------TTTCAATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
113227712 GG--ACACGCTGA-GTATTTTCA
59 GGTCACACGCTGAGGTATTTTCA
113227732 ATTTC
1 ATTTC
113227737 TTTTTTTTTT
Statistics
Matches: 1105, Mismatches: 114, Indels: 258
0.75 0.08 0.17
Matches are distributed among these distances:
67 5 0.00
68 2 0.00
69 5 0.00
70 60 0.05
71 3 0.00
72 108 0.10
73 55 0.05
74 61 0.06
75 122 0.11
76 18 0.02
77 144 0.13
78 22 0.02
79 24 0.02
80 24 0.02
81 37 0.03
82 116 0.10
83 21 0.02
84 19 0.02
85 24 0.02
86 21 0.02
87 73 0.07
88 4 0.00
89 34 0.03
90 12 0.01
91 13 0.01
92 2 0.00
93 19 0.02
94 57 0.05
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (81 bp):
ATTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
CGCTGAGGTATTTTCA
Found at i:113226555 original size:94 final size:94
Alignment explanation
Indices: 113226409--113226581 Score: 267
Period size: 94 Copynumber: 1.8 Consensus size: 94
113226399 TTCTGTTGTC
* * *
113226409 AAAAAAATCAACTCGTATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGCTATTTTCAA
*
113226474 TTTCCGTTTTTCAATTTCTGCCTTTCAAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAAA
* *
113226503 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCTGAGCTATTTTCA
*
113226567 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
113226582 AAAAATTAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 2 0.03
94 69 0.97
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (94 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAAA
Found at i:113226958 original size:89 final size:88
Alignment explanation
Indices: 113226789--113226969 Score: 222
Period size: 89 Copynumber: 2.0 Consensus size: 88
113226779 CGCTGAGTAA
113226789 TTCAATTTCTGTTTCAAAAAAATCAACTCGTATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
1 TTCAATTTCTGTTTCAAAAAAATCAACTC---TATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
113226854 CGCCGAGGTATTTTCAATTTCCGTTT
63 CGCCGAGCTAATTTCAATTTCCGTTT
* * * *
113226880 TTCAATTTCTGCCTTTCAAAAAAATCGACTC-ATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACG
1 TTCAATTTCTG--TTTCAAAAAAATCAACTCTATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACA
* *
113226943 CGCTGAGCTAATTTCAATTTCTGTTT
63 CGCCGAGCTAATTTCAATTTCCGTTT
113226969 T
1 T
113226970 CAAAAATCAA
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
88 2 0.03
89 49 0.62
91 11 0.14
93 17 0.22
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (88 bp):
TTCAATTTCTGTTTCAAAAAAATCAACTCTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
CGAGCTAATTTCAATTTCCGTTT
Found at i:113227249 original size:75 final size:73
Alignment explanation
Indices: 113226878--113227545 Score: 541
Period size: 72 Copynumber: 8.8 Consensus size: 73
113226868 CAATTTCCGT
* * **
113226878 TTTTCAATTTCTGCCTTTCAAAAAAATCGACTC--ATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTG-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCA
* *
113226941 CGCGCTGAGCTA
62 CACGCTGAGGTA
* **
113226953 ATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACG
1 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTCACACG
113227017 CTGAGGTA
66 CTGAGGTA
* * * ** *
113227025 ATTTCAA--TCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAG--ACAC
1 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTCACAC
*
113227086 GTTGAGGTA
65 GCTGAGGTA
* * **
113227095 ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACAC
1 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTCACAC
*
113227158 GTTGAGGTA
65 GCTGAGGTA
* * *
113227167 TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGTCTCGGTTCACA
1 TTTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCACA
*
113227232 TGCTGAGGTA
64 CGCTGAGGTA
* * *
113227242 TTTTCAATTTCTGTCTTTCAAAAAAATCAACCCATATTGTGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCA
*
113227307 CACACTGAGGTA
62 CACGCTGAGGTA
* * *
113227319 TTTTTTTAATTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
1 -----TT--TTCAATTTCT-GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TC
**
113227384 AGTCACA-TATCGAGGTA
57 AGTCACACGCT-GAGGTA
** *
113227401 TTTTCAAAATCTTCTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
1 TTTTC--AAT-TTC---T---GTT---TTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
**
113227466 CCTCAAG--ACACATTGAGGTA
53 CCTC-AGTCACACGCTGAGGTA
*
113227486 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
1 TTTTCAATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
113227546 AGACGCTGAG
Statistics
Matches: 502, Mismatches: 52, Indels: 79
0.79 0.08 0.12
Matches are distributed among these distances:
70 61 0.12
72 109 0.22
73 34 0.07
74 30 0.06
75 75 0.15
76 8 0.02
77 54 0.11
78 2 0.00
79 1 0.00
81 2 0.00
82 49 0.10
83 9 0.02
84 13 0.03
85 15 0.03
86 6 0.01
87 34 0.07
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTCACACG
CTGAGGTA
Found at i:113227399 original size:159 final size:145
Alignment explanation
Indices: 113226899--113227544 Score: 505
Period size: 142 Copynumber: 4.3 Consensus size: 145
113226889 TGCCTTTCAA
* * *** * *
113226899 AAAAATCGACTC--ATTGCGAGAGGTGAGTTGAGCCTTG-GCTCACGCGCTGAGCTAATTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-TCACATTC-GAGGTATTTTCAAT
* ** *** * *
113226961 TTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
64 TTCTGTTTTCAAAAATCAACCCATATTGCGAGAAATGAGTTGAGCCTCAACACACACTGAGGTAT
*
113227026 TTTCAATCTA--TTTTC
129 TTTCAATTTATGTTTTC
* ** * * * * *
113227041 AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTT-GAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACATTCGAGGTATTTTCAATTT
* * * **
113227105 CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
66 CTGTTTTCAAAAATCAACCCATATTGCGAGAAATGAGTTGAGCCTCAACACACACTGAGGTATTT
*
113227170 TCAATTTCTGTTTTC
131 TCAATTTATGTTTTC
* * *
113227185 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGTCTCG-GTTCACATGCTGAGGTATTTTCAA
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-TCACATTC-GAGGTATTTTCAA
* ** *
113227249 TTTCTGTCTTTCAAAAAAATCAACCCATATTGTGAGAGGTGAGTTGAGCTTCAGATCACACACTG
63 TTTCTGT-TTTC--AAAAATCAACCCATATTGCGAGAAATGAGTTGAGCCTCA-A-CACACACTG
*
113227314 AGGTATTTTTTTAATTCAATTTATATTTTTC
123 AGGTA-----TT--TTCAATTTAT-GTTTTC
*
113227345 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACAT-TCGAGGTATTTTC--AA
* ** * *
113227410 TCTTCTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
63 T-TTC---T---G-T---TTTCAAAAATCAACCCATATTGCGAGAAATGAGTTGAGCCTCAACAC
* *
113227475 ACATTGAGGTATTTTCAATTTCTGTCTTTC
117 ACACTGAGGTATTTTCAATTTATGT-TTTC
*
113227505 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
113227545 AAGACGCTGA
Statistics
Matches: 408, Mismatches: 57, Indels: 58
0.78 0.11 0.11
Matches are distributed among these distances:
142 89 0.22
144 30 0.07
145 37 0.09
147 19 0.05
148 4 0.01
150 33 0.08
151 1 0.00
152 11 0.03
157 2 0.00
159 63 0.15
160 20 0.05
161 3 0.01
162 41 0.10
165 1 0.00
167 12 0.03
168 2 0.00
169 36 0.09
171 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (145 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACATTCGAGGTATTTTCAATTT
CTGTTTTCAAAAATCAACCCATATTGCGAGAAATGAGTTGAGCCTCAACACACACTGAGGTATTT
TCAATTTATGTTTTC
Found at i:113227444 original size:87 final size:86
Alignment explanation
Indices: 113227328--113227967 Score: 419
Period size: 87 Copynumber: 7.6 Consensus size: 86
113227318 ATTTTTTTAA
* *
113227328 TTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATA
1 TTCAATTTAT-GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATC
113227393 TCGAGGTATTTTCAAAATCTTCTT
65 TCGAGGTATTTTC-AAATCTT-TT
* * * ** *
113227417 TTCAAGTTAAG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACAT-T
1 TTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATCT
*
113227480 -GAGGTATTTTC-AAT-TTCT
66 CGAGGTATTTTCAAATCTTTT
* * * ** *
113227498 GTC--TTTCA------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG--AC-GC
1 TTCAATTT-ATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATC
*
113227552 T-GAGG--TTTTC-CAT-TTGTT
65 TCGAGGTATTTTCAAATCTT-TT
* * *
113227570 TTCAATTTCTGTTTTCAAAAAAATC-ACTCATATTGCGAG-TGTGAGTTGAGCCTTGACTCACA-
1 TTCAATTTATGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACAT
*
113227632 CGCTGAGGTATTTTCAAATCTGTTT
64 CTC-GAGGTATTTTCAAATCT-TTT
* * *
113227657 TTCAAATT-TGTTTTCAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCC-TCAG-GACA-
1 TTCAATTTATGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACAT
* *
113227717 CGCTGA-GTATTTTCAATTTCTTTTTTTT
64 CTC-GAGGTATTTTCAA-ATC----TTTT
* * *
113227745 TTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTC-TCAGGTCGC
1 TTCAATTTATGTTT-TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGA-GTCAC
* * **
113227809 A-CGCCGAGGTATTTTCAATTGATTT
62 ATC-TCGAGGTATTTTCAAATCTTTT
* * *
113227834 TT---TTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCGGGTCACAT
1 TTCAATTTATG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GAGTCACAT
* *
113227895 ATCGAGGTATTTTCAAAATCTGTT
64 CTCGAGGTATTTTC-AAATCTTTT
*
113227919 TTCAA---AT-TTTT-TAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTG
1 TTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
113227968 GCTCACGCTG
Statistics
Matches: 455, Mismatches: 50, Indels: 100
0.75 0.08 0.17
Matches are distributed among these distances:
71 9 0.02
72 3 0.01
73 7 0.02
74 3 0.01
75 41 0.09
79 15 0.03
80 15 0.03
81 24 0.05
82 26 0.06
83 11 0.02
84 61 0.13
85 36 0.08
86 28 0.06
87 86 0.19
88 11 0.02
89 19 0.04
90 27 0.06
91 14 0.03
92 1 0.00
93 7 0.02
94 11 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (86 bp):
TTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATCT
CGAGGTATTTTCAAATCTTTT
Found at i:113227670 original size:12 final size:13
Alignment explanation
Indices: 113227642--113227674 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
113227632 CGCTGAGGTA
113227642 TTTTCAAATCTGT
1 TTTTCAAATCTGT
*
113227655 TTTTCAAATTTG-
1 TTTTCAAATCTGT
113227667 TTTTCAAA
1 TTTTCAAA
113227675 AAAATCAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (13 bp):
TTTTCAAATCTGT
Found at i:113228135 original size:20 final size:20
Alignment explanation
Indices: 113228110--113228147 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
113228100 TTTATATCCC
113228110 TGAAGTTACAGTGAAGCTAT
1 TGAAGTTACAGTGAAGCTAT
* *
113228130 TGAAGTTGCAGTGGAGCT
1 TGAAGTTACAGTGAAGCT
113228148 GATCGAGGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (20 bp):
TGAAGTTACAGTGAAGCTAT
Found at i:113228713 original size:20 final size:20
Alignment explanation
Indices: 113228663--113228719 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
113228653 GCCCATTAAG
113228663 CCCCCCCAAAAAAAACCTAA
1 CCCCCCCAAAAAAAACCTAA
****
113228683 CCCAAAAAAAAAAAACCTAA
1 CCCCCCCAAAAAAAACCTAA
113228703 CCCCCCCAAAAAAAACC
1 CCCCCCCAAAAAAAACC
113228720 AAGAAACCCT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.56, C:0.40, G:0.00, T:0.04
Consensus pattern (20 bp):
CCCCCCCAAAAAAAACCTAA
Found at i:113230677 original size:10 final size:10
Alignment explanation
Indices: 113230650--113230692 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
113230640 TTAAATTCTA
113230650 AAAGATAAAT
1 AAAGATAAAT
*
113230660 ACAA-ATAATT
1 A-AAGATAAAT
*
113230670 AAAGATAATT
1 AAAGATAAAT
113230680 AAAGATAAAT
1 AAAGATAAAT
113230690 AAA
1 AAA
113230693 AATGAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:113231344 original size:43 final size:40
Alignment explanation
Indices: 113231296--113231385 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
113231286 AAGATGATCT
113231296 TTAGCGGCGTTTATAGGAAAAGCGCTGGTAAAGGTTATGTTCC
1 TTAGCGGCGTTTATAGGAAAAGCGC---TAAAGGTTATGTTCC
* * * * *
113231339 TTAGCGGCGTTTGTGGGGAAATCGCTAAAGGTTATGTTCT
1 TTAGCGGCGTTTATAGGAAAAGCGCTAAAGGTTATGTTCC
113231379 TTAGCGG
1 TTAGCGG
113231386 TGAAAAGGGT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 21 0.50
43 21 0.50
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.32
Consensus pattern (40 bp):
TTAGCGGCGTTTATAGGAAAAGCGCTAAAGGTTATGTTCC
Found at i:113231479 original size:35 final size:35
Alignment explanation
Indices: 113231430--113231496 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
113231420 TGTTTGTGGG
* *
113231430 AAAAGCGCCGCTAAAGGTCATGTTTTATAGAGCAT
1 AAAAGCGCCACTAAAGGTCATGTTCTATAGAGCAT
*
113231465 AAAAGCGCCACTAAAGGTTATGTTCTATAGAG
1 AAAAGCGCCACTAAAGGTCATGTTCTATAGAG
113231497 GCGTTTTATC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (35 bp):
AAAAGCGCCACTAAAGGTCATGTTCTATAGAGCAT
Found at i:113238251 original size:30 final size:30
Alignment explanation
Indices: 113238215--113238279 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
113238205 TAGTAAAAAG
* *
113238215 TAAAATTACACTTTAACCTTTTTAAAATAA
1 TAAAATTACAATTTAACCTTTTAAAAATAA
** * *
113238245 TAAAATTTTAATTTAATCTTTTAAAAATTA
1 TAAAATTACAATTTAACCTTTTAAAAATAA
113238275 TAAAA
1 TAAAA
113238280 ATATAAACTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (30 bp):
TAAAATTACAATTTAACCTTTTAAAAATAA
Found at i:113239053 original size:14 final size:16
Alignment explanation
Indices: 113239035--113239064 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
113239025 TTGAATTGAA
113239035 TTTT-TAATATTTTAT
1 TTTTATAATATTTTAT
113239050 TTTTATAATATTTTA
1 TTTTATAATATTTTA
113239065 ATTATTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTATAATATTTTAT
Found at i:113239155 original size:18 final size:18
Alignment explanation
Indices: 113239126--113239160 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
113239116 ATTAAATCTG
113239126 AATTTTTTT-AAATTTTA
1 AATTTTTTTAAAATTTTA
113239143 AATTTTTTATAAAATTTT
1 AATTTTTT-TAAAATTTT
113239161 TAATAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AATTTTTTTAAAATTTTA
Found at i:113242130 original size:59 final size:60
Alignment explanation
Indices: 113242059--113242173 Score: 144
Period size: 59 Copynumber: 1.9 Consensus size: 60
113242049 AATTGAATAA
**
113242059 TTGAGTGACCATTTTATAACTTTTCATAGTTG-GATGAC-AAAAAAGAAATTTACTAGTAG
1 TTGAGTGACCATTTTATAACTTTTCATAAATGAG-TGACTAAAAAAGAAATTTACTAGTAG
* * * * *
113242118 TTGAGTGGCCATTTTGTAATTTTTTATAAATGAGTGACTGAAAAAGAAATTTACTA
1 TTGAGTGACCATTTTATAACTTTTCATAAATGAGTGACTAAAAAAGAAATTTACTA
113242174 ATAATTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
59 30 0.64
60 17 0.36
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (60 bp):
TTGAGTGACCATTTTATAACTTTTCATAAATGAGTGACTAAAAAAGAAATTTACTAGTAG
Found at i:113249556 original size:22 final size:20
Alignment explanation
Indices: 113249531--113249570 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
113249521 AGTTGTCAAC
113249531 ATTTATATCTTTTTTCAATTTG
1 ATTTATAT-TTTTTT-AATTTG
*
113249553 ATTTGTATTTTTTTAATT
1 ATTTATATTTTTTTAATT
113249571 AAATTTAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 6 0.35
22 7 0.41
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (20 bp):
ATTTATATTTTTTTAATTTG
Found at i:113252252 original size:12 final size:12
Alignment explanation
Indices: 113252235--113252265 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
113252225 GAAATGGAGA
113252235 ATCATCATCACC
1 ATCATCATCACC
*
113252247 ATCATCATCAGC
1 ATCATCATCACC
113252259 ATCATCA
1 ATCATCA
113252266 ATATGGTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.03, T:0.26
Consensus pattern (12 bp):
ATCATCATCACC
Found at i:113263351 original size:171 final size:171
Alignment explanation
Indices: 113263048--113263435 Score: 575
Period size: 171 Copynumber: 2.3 Consensus size: 171
113263038 TCAATTGATT
* *
113263048 TAAATTCTAAATTCATTCCTAAATTAAGTTAATTAAACAGTAATTAAAGAAGGTTTCTCGTTAGT
1 TAAATTATAAATTCATTACTAAATTAAGTTAATTAAACAGTAATTAAAGAAGGTTTCTCGTTAGT
* * *
113263113 AAAAACCTTCAACTCAGATTGATCTAGTTTCAGTGATGTGATCATTGCATAGATTAACGAAACTA
66 AAAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTA
* * *
113263178 AATCAGATCTAAAAATCAGTGATGTGAATAG-GCCATGAAGC
131 AATCAAATATAAAAATCAGTGATGTGAATAGTG-CATAAAGC
* *
113263219 TAAATTATAAAGTCATTACTAAATTAA-TCTAATTAAACTGTAATTAAAGAAGGTTTCTCGTCT-
1 TAAATTATAAATTCATTACTAAATTAAGT-TAATTAAACAGTAATTAAAGAAGGTTTCTCGT-TA
*
113263282 GTAAAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATTATTGCATAGATTAACGAAAC
64 GTAAAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAAC
*
113263347 TAAATCAAATATAAAAATCAGTGATGTGATTAGTGCATAAAGC
129 TAAATCAAATATAAAAATCAGTGATGTGAATAGTGCATAAAGC
* * * * *
113263390 TAAATTATAAATTCATTGCTCAATTAACTTAATCAAACAGTTATTA
1 TAAATTATAAATTCATTACTAAATTAAGTTAATTAAACAGTAATTA
113263436 GCAAACTTTG
Statistics
Matches: 195, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
170 1 0.01
171 191 0.98
172 3 0.02
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (171 bp):
TAAATTATAAATTCATTACTAAATTAAGTTAATTAAACAGTAATTAAAGAAGGTTTCTCGTTAGT
AAAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTA
AATCAAATATAAAAATCAGTGATGTGAATAGTGCATAAAGC
Found at i:113266337 original size:3 final size:3
Alignment explanation
Indices: 113266323--113266376 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
113266313 GACAATAAAA
*
113266323 AAT AAT AGT AAT AAT AAT AAT -AT AGAT AAT AAT -AT ATAT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AAT
113266367 AAT AAT AAT A
1 AAT AAT AAT A
113266377 GTTAGAGATA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 6 0.14
3 32 0.73
4 6 0.14
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:113266590 original size:3 final size:3
Alignment explanation
Indices: 113266582--113266638 Score: 62
Period size: 3 Copynumber: 19.3 Consensus size: 3
113266572 TATAAATATG
* * * *
113266582 ATA ATA ATA ATA ATA ATG ATA ATG ATA ATG ATA ATA ATA AT- ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
113266629 GTA ATA ATA A
1 ATA ATA ATA A
113266639 AAGTAAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:113267016 original size:36 final size:32
Alignment explanation
Indices: 113266973--113267067 Score: 93
Period size: 38 Copynumber: 2.8 Consensus size: 32
113266963 TATGCATAAC
113266973 AATAAAAATACAATATTAAAATATATATACGAGT
1 AATAAAAATACAATATTAAAATATATATAC-A-T
**
113267007 AATAAAAAAATGTATCCGTATTAAAA-ATATATACAT
1 AAT--AAAAA--TA-CAATATTAAAATATATATACAT
113267043 AATAAAAATACAATATTTAAAATAT
1 AATAAAAATACAATA-TTAAAATAT
113267068 TTACACAGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
31 3 0.06
32 8 0.16
33 2 0.04
34 8 0.16
36 9 0.18
37 1 0.02
38 10 0.20
39 9 0.18
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (32 bp):
AATAAAAATACAATATTAAAATATATATACAT
Found at i:113267066 original size:31 final size:32
Alignment explanation
Indices: 113266973--113267072 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 32
113266963 TATGCATAAC
113266973 AATAAAAATACAATATTAAAATATATATACGAGT
1 AATAAAAATACAATATTAAAA-ATATATAC-AGT
**
113267007 AATAAAAAAATGTATCCGTATTAAAAATATATACA-T
1 AAT--AAAAA--TA-CAATATTAAAAATATATACAGT
* *
113267043 AATAAAAATACAATATTTAAAATATTTACA
1 AATAAAAATACAATATTAAAAATATATACA
113267073 CAGTATATGC
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
31 16 0.29
32 2 0.04
34 8 0.15
36 9 0.16
37 1 0.02
38 10 0.18
39 9 0.16
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (32 bp):
AATAAAAATACAATATTAAAAATATATACAGT
Found at i:113267378 original size:11 final size:11
Alignment explanation
Indices: 113267355--113267395 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
113267345 GTAAAACTAT
113267355 TAATA-ATACTA
1 TAATATATA-TA
113267366 TAATATATATA
1 TAATATATATA
*
113267377 TAATATACATA
1 TAATATATATA
113267388 T-ATATATA
1 TAATATATA
113267396 AGTATGACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
10 6 0.22
11 18 0.67
12 3 0.11
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (11 bp):
TAATATATATA
Found at i:113267381 original size:19 final size:17
Alignment explanation
Indices: 113267357--113267396 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
113267347 AAAACTATTA
113267357 ATAATACTATAATATATAT
1 ATAATA-TA-AATATATAT
*
113267376 ATAATATACATATATAT
1 ATAATATAAATATATAT
113267393 ATAA
1 ATAA
113267397 GTATGACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 12 0.60
18 2 0.10
19 6 0.30
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
ATAATATAAATATATAT
Found at i:113267390 original size:17 final size:16
Alignment explanation
Indices: 113267364--113267396 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
113267354 TTAATAATAC
113267364 TATAATATATATATAA
1 TATAATATATATATAA
113267380 TATACATATATATATAA
1 TATA-ATATATATATAA
113267397 GTATGACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATAATATATATATAA
Found at i:113267988 original size:18 final size:18
Alignment explanation
Indices: 113267967--113268007 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
113267957 TCGAAAATAA
113267967 AATAAAAAGGAAA-AAAAT
1 AATAAAAA-GAAAGAAAAT
*
113267985 AATAAATAGAAAGAAAAT
1 AATAAAAAGAAAGAAAAT
113268003 AATAA
1 AATAA
113268008 TAATGTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (18 bp):
AATAAAAAGAAAGAAAAT
Found at i:113268006 original size:21 final size:22
Alignment explanation
Indices: 113267966--113268010 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
113267956 TTCGAAAATA
113267966 AAATAAAAAGGAAAAAAATAAT
1 AAATAAAAAGGAAAAAAATAAT
* *
113267988 AAATAGAAA-GAAAATAATAAT
1 AAATAAAAAGGAAAAAAATAAT
113268009 AA
1 AA
113268011 TGTAATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (22 bp):
AAATAAAAAGGAAAAAAATAAT
Found at i:113269647 original size:18 final size:17
Alignment explanation
Indices: 113269626--113269659 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
113269616 TTCCAAAAAT
113269626 TATAATAATATAAATTAA
1 TATAATAATA-AAATTAA
113269644 TATAATAATAAAATTA
1 TATAATAATAAAATTA
113269660 TATTTTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TATAATAATAAAATTAA
Found at i:113272905 original size:26 final size:26
Alignment explanation
Indices: 113272867--113272919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
113272857 CAATCTCACT
*
113272867 TGGTGTCATCTTTGCTCAAACCCATA
1 TGGTGTCAGCTTTGCTCAAACCCATA
*
113272893 TGGTGTCAGCTTTGCTCGAACCCATA
1 TGGTGTCAGCTTTGCTCAAACCCATA
113272919 T
1 T
113272920 CTTCCTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (26 bp):
TGGTGTCAGCTTTGCTCAAACCCATA
Found at i:113273260 original size:21 final size:21
Alignment explanation
Indices: 113273236--113273275 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
113273226 ACATTTTCTA
113273236 AAGTT-AAAAGTCAAAACCATT
1 AAGTTAAAAAG-CAAAACCATT
113273257 AAGTTAAAAAGCAAAACCA
1 AAGTTAAAAAGCAAAACCA
113273276 CATCGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.57, C:0.15, G:0.10, T:0.17
Consensus pattern (21 bp):
AAGTTAAAAAGCAAAACCATT
Found at i:113277811 original size:21 final size:21
Alignment explanation
Indices: 113277785--113277825 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
113277775 ATCTGCTCAA
* *
113277785 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
113277806 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
113277826 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:113283396 original size:50 final size:50
Alignment explanation
Indices: 113283342--113283440 Score: 198
Period size: 50 Copynumber: 2.0 Consensus size: 50
113283332 CATTGGTCTT
113283342 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAAG
1 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAAG
113283392 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAA
1 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAA
113283441 AATGGGATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.38
Consensus pattern (50 bp):
TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAAG
Found at i:113283877 original size:16 final size:16
Alignment explanation
Indices: 113283856--113283897 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
113283846 TGCATACGTA
*
113283856 TTATATATATATATAT
1 TTATATATATATAAAT
113283872 TTATATATATATAAAT
1 TTATATATATATAAAT
113283888 TT-TA-ATATAT
1 TTATATATATAT
113283898 CAATAAGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 6 0.24
15 2 0.08
16 17 0.68
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATATATATATAAAT
Found at i:113285531 original size:12 final size:12
Alignment explanation
Indices: 113285510--113285543 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
113285500 AATAATTTCA
*
113285510 GCATATATGCAT
1 GCATACATGCAT
*
113285522 GCATGCATGCAT
1 GCATACATGCAT
113285534 GCATACATGC
1 GCATACATGC
113285544 GTAGACATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (12 bp):
GCATACATGCAT
Found at i:113291388 original size:16 final size:17
Alignment explanation
Indices: 113291367--113291398 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
113291357 AAGTTAACAG
113291367 AATATATGATA-ATAAA
1 AATATATGATACATAAA
113291383 AATATATGATACATAA
1 AATATATGATACATAA
113291399 CAAAACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
AATATATGATACATAAA
Found at i:113296870 original size:33 final size:33
Alignment explanation
Indices: 113296828--113296893 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
113296818 ATTTCTAGGG
113296828 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
1 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
113296861 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
1 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
113296894 GAATGAGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.30, G:0.06, T:0.27
Consensus pattern (33 bp):
ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
Found at i:113299920 original size:16 final size:16
Alignment explanation
Indices: 113299901--113299931 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
113299891 CATTATATCA
113299901 TAAAAATAACTATTTT
1 TAAAAATAACTATTTT
*
113299917 TAAAAATAATTATTT
1 TAAAAATAACTATTT
113299932 AAAAGCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAAAATAACTATTTT
Found at i:113313725 original size:6 final size:6
Alignment explanation
Indices: 113313714--113313742 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
113313704 TCCGTCAAGA
113313714 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
113313743 TGCAGATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:113315125 original size:24 final size:24
Alignment explanation
Indices: 113315097--113315144 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
113315087 AAAAGATGAT
*
113315097 GATAGTAGTGATGAGGATGAAGAG
1 GATAGTACTGATGAGGATGAAGAG
* *
113315121 GATAGTTCTGCTGAGGATGAAGAG
1 GATAGTACTGATGAGGATGAAGAG
113315145 TCCAGTGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.40, T:0.23
Consensus pattern (24 bp):
GATAGTACTGATGAGGATGAAGAG
Found at i:113318974 original size:71 final size:71
Alignment explanation
Indices: 113318890--113319060 Score: 306
Period size: 71 Copynumber: 2.4 Consensus size: 71
113318880 CAATTATCCT
* *
113318890 ATAAAGAGAGATAAAGATAACTTATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
1 ATAAAGGGAGATAAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
113318955 TACTAA
66 TACTAA
*
113318961 ATAAAGGGTGATAAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
1 ATAAAGGGAGATAAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
113319026 TACTAA
66 TACTAA
*
113319032 ATAAAGGGAGATAAAGATAACTGATGAGA
1 ATAAAGGGAGATAAAGATAACTAATGAGA
113319061 ATTGATAAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 95 1.00
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (71 bp):
ATAAAGGGAGATAAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
TACTAA
Found at i:113321905 original size:14 final size:16
Alignment explanation
Indices: 113321866--113321897 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
113321856 ATTGATTTCA
113321866 TATT-ATATATATTGT
1 TATTCATATATATTGT
113321881 TATTCATATATATTGT
1 TATTCATATATATTGT
113321897 T
1 T
113321898 TTGTATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.59
Consensus pattern (16 bp):
TATTCATATATATTGT
Found at i:113323048 original size:16 final size:15
Alignment explanation
Indices: 113323023--113323055 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
113323013 GATTAAAAAA
113323023 TTAGCAGTTAGTTAG
1 TTAGCAGTTAGTTAG
113323038 TTAGACAGTTAGTTAG
1 TTAG-CAGTTAGTTAG
113323054 TT
1 TT
113323056 GTTAAGCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (15 bp):
TTAGCAGTTAGTTAG
Found at i:113328222 original size:219 final size:221
Alignment explanation
Indices: 113327777--113328325 Score: 696
Period size: 219 Copynumber: 2.5 Consensus size: 221
113327767 TTGACAGATG
*
113327777 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCATTCTAGTTCATT
1 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCCATTCTAGTTCATT
* * * * * * *
113327842 CTTGTGCAGATGGCAAGAAAAC-AAGTGGGCATACTGCAACCCTTTCTGCTTCCAAAAAGAAGGA
66 CTAGTGCAGATGGCAAGAAAGCGAAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGA
* * * *
113327906 AAACCTGGTTACTCCCCAAAAGGCAGGCAGAATTTCCCTCTCATCTTTTTCTTTTTAGAGATTTT
131 AAACCTGGTCACTCCCCAAAAGACAGGCAGAATTTCCCTCCCATCTTTCTCTTTTTAGAGATTTT
* *
113327971 GATTGCTATTTTACTAATGAGGGATC
196 GATTGCTATTTTACTAATAAAGGATC
* * *
113327997 ATAATGCCCATTTCGTCAATTGTAAAATGTATTCCTTACTTCAAATTTCACCGTTCTAGTTCATT
1 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCCATTCTAGTTCATT
* * * *
113328062 CTGGTGCAGATAGCAAGAAAGCGTA-TGGACATA-TGCAACCCCTCCTACTCCCAAAAAGAAGGC
66 CTAGTGCAGATGGCAAGAAAGCGAAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGA
* * * * *
113328125 AAAGCTGGTCACTCCCTAAAAGATAGGCGGATTTTCCCTCCCATCTTTACTC-TTTTAGAGATTT
131 AAACCTGGTCACTCCCCAAAAGACAGGCAGAATTTCCCTCCCATCTTT-CTCTTTTTAGAGATTT
** *
113328189 TGATTGCTATTTTACTAATAAATTATT
195 TGATTGCTATTTTACTAATAAAGGATC
** * * * *
113328216 ATAATGCAAATTTTAG-CAATTGTAAAATATGTTCATTACTTCAAATTTCTCTATTCTAGTTCAT
1 ATAATGCCCA-TTTCGTCAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCCATTCTAGTTCAT
* * *
113328280 TCTAGTGCAGATGGCAAGAAAGCG-GGTTGACATACTACAACCCCTC
65 TCTAGTGCAGATGGCAAGAAAGCGAAGTGGACATACTGCAACCCCTC
113328326 ATTGCCCTTC
Statistics
Matches: 282, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
219 178 0.63
220 103 0.37
221 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (221 bp):
ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCCATTCTAGTTCATT
CTAGTGCAGATGGCAAGAAAGCGAAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGA
AAACCTGGTCACTCCCCAAAAGACAGGCAGAATTTCCCTCCCATCTTTCTCTTTTTAGAGATTTT
GATTGCTATTTTACTAATAAAGGATC
Found at i:113328476 original size:156 final size:156
Alignment explanation
Indices: 113328180--113328481 Score: 376
Period size: 156 Copynumber: 1.9 Consensus size: 156
113328170 TTTACTCTTT
* * * *
113328180 TAGAGATTTTGATTGCTATTTTACTAATAAATTATTATAATGCAAATTTTAGCAATTGTAAAATA
1 TAGAGACTTTGATTGCTATTTTACTAATAAATGATCATAATGCAAATTTTAGCAATCGTAAAATA
* * *
113328245 TGTTCATTACTTCAAATTTCTCTATTCTAGTTCATTCTAGTGCAGATGGCAAGAAAGCGGGTTGA
66 TGTTCATTACTTCAAATTTCTCTATTCTAGTTCATTCTAGTGCAGATAGCAAGAAAGCGGATGGA
*
113328310 CATACTACAACCCCTCATTGCCCTTC
131 CATACAACAACCCCTCATTGCCCTTC
* * ** *
113328336 TAGAGACTTTGATTGTTATTTTACTAAT-GATGGATCATAATGCCCA-TTTCGTCAATCGTAAAA
1 TAGAGACTTTGATTGCTATTTTACTAATAAAT-GATCATAATGCAAATTTTAG-CAATCGTAAAA
* * * * * *
113328399 TTTGTTTC-TTACTTCCAATTTCTCTGTTCTAGTTTATTCTGGTGCAGATAGCAAGAAAGCGTAT
64 TATG-TTCATTACTTCAAATTTCTCTATTCTAGTTCATTCTAGTGCAGATAGCAAGAAAGCGGAT
*
113328463 GGATATACAACAACCCCTC
128 GGACATACAACAACCCCTC
113328482 CTGCTCTCAA
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
155 6 0.05
156 114 0.93
157 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (156 bp):
TAGAGACTTTGATTGCTATTTTACTAATAAATGATCATAATGCAAATTTTAGCAATCGTAAAATA
TGTTCATTACTTCAAATTTCTCTATTCTAGTTCATTCTAGTGCAGATAGCAAGAAAGCGGATGGA
CATACAACAACCCCTCATTGCCCTTC
Found at i:113328669 original size:376 final size:375
Alignment explanation
Indices: 113327961--113328701 Score: 1029
Period size: 376 Copynumber: 2.0 Consensus size: 375
113327951 TTTTTCTTTT
* *
113327961 TAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATG
1 TAGAGACTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATCGTAAAATG
113328026 TATTCCTTACTTCAAATTTCACCGTTCTAGTTCATTCTGGTGCAGATAGCAAGAAAGCGTATGGA
66 TATTCCTTACTTCAAATTTCACCGTTCTAGTTCATTCTGGTGCAGATAGCAAGAAAGCGTATGGA
** * * *
113328091 CATATGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCTAAAAGATAGGCGGA
131 CATAAACAACCCCTCCTACTCCCAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGATAGGCAGA
* * * * * *
113328156 TTTTCCCTCCCATCTTTACTCTTTTAGAGATTTTGATTGCTATTTTACTAATAAATTATTATAAT
196 TTTTCCCTCCCATCTTTACCCTTCTAGAGATTTTAATTGCTATTTTAATAATAAATGATCATAAT
*
113328221 GCAAATTTTAGCAATTGTAAAATATGTTCATTACTTCAAATTTCTCTATTCTAGTTCATTCTAGT
261 GCAAATTTTAGCAATTGTAAAATATGTTCATTACTTCAAATTTCTCTATTCTAGCTCATTCTAGT
* * * * *
113328286 GCAGATGGCAAGAAAGCGGGTTGACATACTACAACCCCTCATTGCCCTTC
326 ACAGATGGCAAGAAAGAGGGTGGACAAAATACAACCCCTCATTGCCCTTC
* * *
113328336 TAGAGACTTTGATTGTTATTTTACTAATGATGGATCATAATGCCCATTTCGTCAATCGTAAAATT
1 TAGAGACTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATCGTAAAATG
* * * * * *
113328401 TGTTTCTTACTTCCAATTTCTCTGTTCTAGTTTATTCTGGTGCAGATAGCAAGAAAGCGTATGGA
66 TATTCCTTACTTCAAATTTCACCGTTCTAGTTCATTCTGGTGCAGATAGCAAGAAAGCGTATGGA
* * * *
113328466 TATACAACAACCCCTCCTGCTCTCAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGATAGGTAG
131 CATA-AACAACCCCTCCTACTCCCAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGATAGGCAG
* *
113328531 ATTTTCCCTTCCATCTTTGCCCTTCTAGAGATTTTAATTGCTATTTTAATAATAAGA-GATCATA
195 ATTTTCCCTCCCATCTTTACCCTTCTAGAGATTTTAATTGCTATTTTAATAATAA-ATGATCATA
* * * * * * *
113328595 ATGTC-CA-TTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCTGTTCTAGCTCATTC
259 ATG-CAAATTTTAG-CAATTGTAAAATATGTTCATTACTTCAAATTTCTCTATTCTAGCTCATTC
* * *
113328658 TGGTACAGATGGCAAGTAAGAGGGTGGACAAAATGCAACCCCTC
322 TAGTACAGATGGCAAGAAAGAGGGTGGACAAAATACAACCCCTC
113328702 CTACTCCCAA
Statistics
Matches: 318, Mismatches: 44, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
375 126 0.40
376 190 0.60
377 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (375 bp):
TAGAGACTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATCGTAAAATG
TATTCCTTACTTCAAATTTCACCGTTCTAGTTCATTCTGGTGCAGATAGCAAGAAAGCGTATGGA
CATAAACAACCCCTCCTACTCCCAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGATAGGCAGA
TTTTCCCTCCCATCTTTACCCTTCTAGAGATTTTAATTGCTATTTTAATAATAAATGATCATAAT
GCAAATTTTAGCAATTGTAAAATATGTTCATTACTTCAAATTTCTCTATTCTAGCTCATTCTAGT
ACAGATGGCAAGAAAGAGGGTGGACAAAATACAACCCCTCATTGCCCTTC
Found at i:113328715 original size:220 final size:219
Alignment explanation
Indices: 113328327--113329334 Score: 1182
Period size: 219 Copynumber: 4.6 Consensus size: 219
113328317 CAACCCCTCA
* *
113328327 TTGCCCTTCTAGAGACTTTGATTGTTATTTTACTAATGATGGATCATAATGCCCATTTCGTCAAT
1 TTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA-GGATCATAATGCCCATTTCGTCAAT
* * * * *
113328392 CGTAAAATTTGTTTCTTACTTCCAATTTCTCTGTTCTAGTTTATTCTGGTGCAGATAGCAAGAAA
65 TGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* ** * * * *
113328457 GCGTATGGATATACAA--CAACCCCTCCTGCTCTCAAAAAGAAGGCAAAACTGGTCACTCCCCAA
130 GAGGGTGGACA-A-AATGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAA
* * *
113328520 AAGATAGGTAGATTTTCCCTTCCATCT
193 AAGACAGGCAGATTTTCCCTCCCATCT
* * * *
113328547 TTGCCCTTCTAGAGATTTTAATTGCTATTTTAATAATAAGAGATCATAATGTCCATTTCGTCAAT
1 TTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG-GATCATAATGCCCATTTCGTCAAT
* * * *
113328612 TGTAAAATGTGTTCCTTATTTCCAATTTCTCTGTTCTAGCTCATTCTGGTACAGATGGCAAGTAA
65 TGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* *
113328677 GAGGGTGGACAAAATGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTAACTTCCCAAAA
130 GAGGGTGGACAAAATGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
113328742 GACAGGCAGATTTTCCCTCCCATCT
195 GACAGGCAGATTTTCCCTCCCATCT
* *
113328767 TTGCCCTACTAGAGA-TTTGATTGCTATTTTACTAATGAGAGATCATAATGCCCATTTCATCAAT
1 TTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG-GATCATAATGCCCATTTCGTCAAT
* * * * * *
113328831 TGTAAAATGTGTTCCTTACTTCCAATTTCT-TCGATCTAGTTTATTTTGATGCAAATAGCAAGAA
65 TGTAAAATGTGTTCCTTACTTCCAATTTCTCT-GTTCTAGTTCATTCTGGTGCAGATGGCAAGAA
* * * * * * **
113328895 ATAGGGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGTTCACTCTACAAA
129 AGAGGGTGGACAAAATGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* * *
113328960 AAACAGGCAGACTTTCCGTCCCATCT
194 AGACAGGCAGATTTTCCCTCCCATCT
* * * * * *
113328986 TT-CCTTTCTAGAGATTTTGATTGCTATTTTACAAATGAGGAATAATAATTCCCGTTTCGTTAAT
1 TTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGG-ATCATAATGCCCATTTCGTCAAT
* * * * * *
113329050 TGTAAAATATGTTCTTTACTTTCAATTTCTCTATTCTAGTTCATTCTAGTGCAGATGG-AAAAAA
65 TGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * * * * * * *
113329114 GCGAGTGGACATATTGTAACCCCTCCTACTCCAAAAAAGAAGACAAAGCTAGTCACTCCCCAAAA
130 GAGGGTGGACAAAATGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
* *
113329179 GACAAGCAGATTTTCCCTCTCATCT
195 GACAGGCAGATTTTCCCTCCCATCT
* ** * *
113329204 TTGCCCCTCTAGAGATTTTGATTATTATTTTACTAATGAGGGATCATAATACCTATTTCGTCAAT
1 TTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA-GGATCATAATGCCCATTTCGTCAAT
* * * * * * *
113329269 TGTAAAATGTATTCTTTACTTCAAATTTCACCGTTCTAGTTCATTCTAGTGCAGATGGTAAGAAA
65 TGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
113329334 G
130 G
113329335 CATATAGACA
Statistics
Matches: 667, Mismatches: 111, Indels: 20
0.84 0.14 0.03
Matches are distributed among these distances:
218 94 0.14
219 364 0.55
220 209 0.31
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (219 bp):
TTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGATCATAATGCCCATTTCGTCAATT
GTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAG
AGGGTGGACAAAATGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAG
ACAGGCAGATTTTCCCTCCCATCT
Found at i:113328918 original size:595 final size:595
Alignment explanation
Indices: 113327777--113328920 Score: 1505
Period size: 595 Copynumber: 1.9 Consensus size: 595
113327767 TTGACAGATG
* *
113327777 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCATTCTAGTTCATT
1 ATAATGCCCATTTCGTCAATCGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATT
* * * ** * *
113327842 CTTGTGCAGATGGCAAGAAAACAAGTGGGCATACTGCAACCCTTTCTGCTTCCAAAAAGAAGGAA
66 CTGGTGCAGATAGCAAGAAAACAAGTGGACATACAACAACCCCTCCTGCTTCCAAAAAGAAGGAA
* * ** * * *
113327907 AACCTGGTTACTCCCCAAAAGGCAGGCAGAATTTCCCTCTCATCTTTTTCTTTTTAGAGATTTTG
131 AACCTGGTCACTCCCCAAAAGACAGGCAGAATTTCCCTCTCATCTTTGCCCTTCTAGAGATTTTA
* * *
113327972 ATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTATTCCTTACT
196 ATTGCTATTTTAATAATAAGAGATCATAATGCCCATTTCGTCAATTGTAAAATGTATTCCTTACT
* * * * *
113328037 TCAAATTTCACCGTTCTAGTTCATTCTGGTGCAGATAGCAAGAAAGCGTATGGACATATGCAACC
261 TCAAATTTCACCGTTCTAGCTCATTCTGGTACAGATAGCAAGAAAGAGGATGGACAAATGCAACC
* * *
113328102 CCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCTAAAAGATAGGCGGATTTTCCCTCCC
326 CCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTAACTCCCTAAAAGACAGGCAGATTTTCCCTCCC
* ** * * *
113328167 ATCTTTACTCTTTTAGAGATTTTGATTGCTATTTTACTAATAAATTATTATAATGCAAATTTTAG
391 ATCTTTACCCTACTAGAGATTTTGATTGCTATTTTACTAATAAATGATCATAATGCAAATTTCAG
* * *
113328232 CAATTGTAAAATATGTTCATTACTTCAAATTTCTCTATTCTAGTTCATTCTAGTGCAGATGGCAA
456 CAATTGTAAAATATGTTCATTACTTCAAATTTCTCGATTCTAGTTCATTCTAGTGCAAATAGCAA
* *
113328297 GAAAGCGGGTTGACATACTACAACCCCTCATTGCCCTTCTAGAGACTTTGATTGTTATTTTACTA
521 GAAAGAGGGTGGACATACTACAACCCCTCATTGCCCTTCTAGAGACTTTGATTGTTATTTTACTA
113328362 ATGATGGATC
586 ATGATGGATC
* * ** *
113328372 ATAATGCCCATTTCGTCAATCGTAAAATTTGTTTCTTACTTCCAATTTCTCTGTTCTAGTTTATT
1 ATAATGCCCATTTCGTCAATCGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATT
* * *
113328437 CTGGTGCAGATAGCAAGAAAGCGTA-TGGATATACAACAACCCCTCCTGC-TCTCAAAAAGAAGG
66 CTGGTGCAGATAGCAAGAAAAC-AAGTGGACATACAACAACCCCTCCTGCTTC-CAAAAAGAAGG
* * *
113328500 CAAAA-CTGGTCACTCCCCAAAAGATAGGTAGATTTTCCCT-TCCATCTTTGCCCTTCTAGAGAT
129 -AAAACCTGGTCACTCCCCAAAAGACAGGCAGAATTTCCCTCT-CATCTTTGCCCTTCTAGAGAT
* *
113328563 TTTAATTGCTATTTTAATAATAAGAGATCATAATGTCCATTTCGTCAATTGTAAAATGTGTTCCT
192 TTTAATTGCTATTTTAATAATAAGAGATCATAATGCCCATTTCGTCAATTGTAAAATGTATTCCT
* * * * * * *
113328628 TATTTCCAATTTCTCTGTTCTAGCTCATTCTGGTACAGATGGCAAGTAAGAGGGTGGACAAAATG
257 TACTTCAAATTTCACCGTTCTAGCTCATTCTGGTACAGATAGCAAGAAAGAGGATGGAC-AAATG
113328693 CAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTAACTTCCC-AAAAGACAGGCAGATTTTC
321 CAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTAAC-TCCCTAAAAGACAGGCAGATTTTC
* * **
113328757 CCTCCCATCTTTGCCCTACTAGAGA-TTTGATTGCTATTTTACTAATGAGA-GATCATAATGCCC
385 CCTCCCATCTTTACCCTACTAGAGATTTTGATTGCTATTTTACTAAT-AAATGATCATAATGCAA
* * * * * *
113328820 ATTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTTCGA-TCTAGTTTATT-TTGATGC
449 ATTTCAGCAATTGTAAAATATGTTCATTACTTCAAATTTC-TCGATTCTAGTTCATTCTAG-TGC
* * *
113328883 AAATAGCAAGAAATAGGGTGGACATATTGCAACCCCTC
512 AAATAGCAAGAAAGAGGGTGGACATACTACAACCCCTC
113328921 CTGCTCCCAA
Statistics
Matches: 469, Mismatches: 71, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
594 5 0.01
595 369 0.79
596 91 0.19
597 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (595 bp):
ATAATGCCCATTTCGTCAATCGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATT
CTGGTGCAGATAGCAAGAAAACAAGTGGACATACAACAACCCCTCCTGCTTCCAAAAAGAAGGAA
AACCTGGTCACTCCCCAAAAGACAGGCAGAATTTCCCTCTCATCTTTGCCCTTCTAGAGATTTTA
ATTGCTATTTTAATAATAAGAGATCATAATGCCCATTTCGTCAATTGTAAAATGTATTCCTTACT
TCAAATTTCACCGTTCTAGCTCATTCTGGTACAGATAGCAAGAAAGAGGATGGACAAATGCAACC
CCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTAACTCCCTAAAAGACAGGCAGATTTTCCCTCCC
ATCTTTACCCTACTAGAGATTTTGATTGCTATTTTACTAATAAATGATCATAATGCAAATTTCAG
CAATTGTAAAATATGTTCATTACTTCAAATTTCTCGATTCTAGTTCATTCTAGTGCAAATAGCAA
GAAAGAGGGTGGACATACTACAACCCCTCATTGCCCTTCTAGAGACTTTGATTGTTATTTTACTA
ATGATGGATC
Found at i:113329470 original size:163 final size:164
Alignment explanation
Indices: 113329194--113329498 Score: 468
Period size: 163 Copynumber: 1.9 Consensus size: 164
113329184 GCAGATTTTC
* * ** *
113329194 CCTCTCATCTTTGCCCCTCTAGAGATTTTGATTATTATTTTACTAATGAGGGATCATAATACCTA
1 CCTCCCATCTTTGCCCCTCTAGAGATTTTGATTATTAGTTTACTAATGAAAGATCATAATACCCA
* *
113329259 TTTCGTCAATTGTAAAATGTATTCTTTACTTCAAATTTCACCGTTCTAGTTCATTCTAGTGCAGA
66 TTTCATCAATTGTAAAATGTATTCCTTACTTCAAATTTCACCGTTCTAGTTCATTCTAGTGCAGA
*
113329324 TGGTAAGAAAGCATATAGACATACTGCAACCCCT
131 TGGCAAGAAAGCATATAGACATACTGCAACCCCT
* * *
113329358 CCTCCCATCTTTGCCCCTTTAGAGATTTTGATTGTTAGTTTACTAAT-AAAGATCATAATGCCCA
1 CCTCCCATCTTTGCCCCTCTAGAGATTTTGATTATTAGTTTACTAATGAAAGATCATAATACCCA
* * * *
113329422 TTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTAGTGCAGA
66 TTTCATCAATTGTAAAATGTATTCCTTACTTCAAATTTCACCGTTCTAGTTCATTCTAGTGCAGA
113329487 TGGCAAGAAAGC
131 TGGCAAGAAAGC
113329499 GGGTGAACAT
Statistics
Matches: 126, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
163 83 0.66
164 43 0.34
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (164 bp):
CCTCCCATCTTTGCCCCTCTAGAGATTTTGATTATTAGTTTACTAATGAAAGATCATAATACCCA
TTTCATCAATTGTAAAATGTATTCCTTACTTCAAATTTCACCGTTCTAGTTCATTCTAGTGCAGA
TGGCAAGAAAGCATATAGACATACTGCAACCCCT
Found at i:113329691 original size:383 final size:382
Alignment explanation
Indices: 113328978--113329698 Score: 1027
Period size: 383 Copynumber: 1.9 Consensus size: 382
113328968 AGACTTTCCG
* * * * * *
113328978 TCCCATCTTTCCTTTCTAGAGATTTTGATTGCTATTTTACAAATGAGGAATAATAATTCCCGTTT
1 TCCCATCTTTCCCTTCTAGAGATTTTGATTGCTAGTTTACAAATAAAGAATAATAATGCCCATTT
* * * *
113329043 CGTTAATTGTAAAATATGTTCTTTACTTTCAATTTCTCTATTCTAGTTCATTCTAGTGCAGATGG
66 CATCAATTGTAAAATATGTTCCTTACTTCCAATTTCTCTATTCTAGTTCATTCTAGTGCAGATGG
* * *
113329108 AAAAAAGCGAGTGGACATATTGTAACCCCTCCTACTCCAAAAAAGAAGACAAAGCTAGTCACTCC
131 AAAAAAGCGAGTGAACATACTGCAACCCCTCCTACTCCAAAAAAGAAGACAAAGCTAGTCACTCC
* * * *
113329173 CCAAAAGACAAGCAGATTTTCCCTCTCATCTTTGCCCCTCTAGAGATTTTGATTATTATTTTACT
196 CCAAAAGACAAGAAGATTTTCCCTCCCATCTTTGCCCCTCTAAAGATTTTGATTACTATTTTACT
* * *
113329238 AATGAGGGATCATAATACCTATTTCGTCAATTGTAAAATGTATTCTTTACTTCAAATTTCACCGT
261 AATAAGGGATCATAATACCCATTTCGTCAATTGTAAAATGTATTCTTTACTTCAAATTTCACCAT
113329303 TCTAGTTCATTCTAGTGCAGATGGTAAGAAAGCATATAGACATACTGCAACCCCTCC
326 TCTAGTTCATTCTAGTGCAGATGGTAAGAAAGCATATAGACATACTGCAACCCCTCC
* * *
113329360 TCCCATCTTTGCCCCTT-TAGAGATTTTGATTGTTAGTTTACTAATAAAG-ATCATAATGCCCAT
1 TCCCATCTTT--CCCTTCTAGAGATTTTGATTGCTAGTTTACAAATAAAGAATAATAATGCCCAT
* *
113329423 TTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTAGTGCAGAT
64 TTCATCAATTGTAAAATATGTTCCTTACTTCCAATTTCTCTATTCTAGTTCATTCTAGTGCAGAT
* * * * * * *
113329488 GGCAAGAAAGCGGGTGAACATACTGCAACCGCTCTTGCTCCCAAAAAGAAGGCAAAGCTAGTCAC
129 GG-AAAAAAGCGAGTGAACATACTGCAACCCCTCCTACTCCAAAAAAGAAGACAAAGCTAGTCAC
* *
113329553 TCCCTAAAAGAC-AGAAAGATTTTCCCTCCCATCTTTGCCCTTCTAAAGATTTTGATTACTATTT
193 TCCCCAAAAGACAAG-AAGATTTTCCCTCCCATCTTTGCCCCTCTAAAGATTTTGATTACTATTT
* * *
113329617 TACTAATAAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTT-TCTTACTTCCAATTTC
257 TACTAATAAGGGATCATAATACCCATTTCGTCAATTGTAAAATGTATTCT-TTACTTCAAATTTC
*
113329681 TCCATTCTAGTTCATTCT
321 ACCATTCTAGTTCATTCT
113329699 TATATAAATG
Statistics
Matches: 296, Mismatches: 38, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
382 85 0.29
383 207 0.70
384 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (382 bp):
TCCCATCTTTCCCTTCTAGAGATTTTGATTGCTAGTTTACAAATAAAGAATAATAATGCCCATTT
CATCAATTGTAAAATATGTTCCTTACTTCCAATTTCTCTATTCTAGTTCATTCTAGTGCAGATGG
AAAAAAGCGAGTGAACATACTGCAACCCCTCCTACTCCAAAAAAGAAGACAAAGCTAGTCACTCC
CCAAAAGACAAGAAGATTTTCCCTCCCATCTTTGCCCCTCTAAAGATTTTGATTACTATTTTACT
AATAAGGGATCATAATACCCATTTCGTCAATTGTAAAATGTATTCTTTACTTCAAATTTCACCAT
TCTAGTTCATTCTAGTGCAGATGGTAAGAAAGCATATAGACATACTGCAACCCCTCC
Found at i:113329745 original size:220 final size:220
Alignment explanation
Indices: 113329358--113335068 Score: 6510
Period size: 220 Copynumber: 26.0 Consensus size: 220
113329348 TGCAACCCCT
* * *
113329358 CCTCCCATCTTTGCCCCTT-TAGAGATTTTGATTGTTAGTTTACTAATAA-AGATCATAATGCCC
1 CCTCCCATCTTTG-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCC
* * *
113329421 ATTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTAGTGCAG
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * *
113329486 ATGGCAAGAAAGCGGGTGAACATACTGCAACCGCTCTTGCTCCCAAAAAGAAGGCAAAGCTAGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
*
113329551 ACTCCCTAAAAGAC-AGAAAGATTTTC
195 ACTCCCTAAAAGACAAG-CAGATTTTC
* *
113329577 CCTCCCATCTTTGCCCTTCTAAAGATTTTGATTACTATTTTACTAATAAGGGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * ** ** *
113329642 TTTCGTCAATTGTAAAATGTGTTTCTTACTTCCAATTTCTCCATTCTAGTTCATTCTTATATAAA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * * * * * * * *
113329707 TGACAAAAAAGTGGGTAGACCTACTACAACCCCTCTTGCTCCCAAAAAGAAGGGAAAGCTAGTTA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
*
113329772 CTCTCC-AAAAGTCAAGCAGATTTTC
196 CTC-CCTAAAAGACAAGCAGATTTTC
* *
113329797 CCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * *
113329862 TTTCGTTAATTGTAAAATGTGTTTCTTACTTCCATTTTCTCCGTTCTAGTTCATTTTGGTGCAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * *
113329927 TGGCAAGAAAGTGGGTGGACATACTGCAACCCCTCCTGCTCCGAAAAAGAAGGCAAAGCTGTTCA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * *
113329992 CTCCCCAAAAGATAAGCAGGTTTTC
196 CTCCCTAAAAGACAAGCAGATTTTC
* * *
113330017 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATGAGTGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * * *
113330082 TTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTCACTGTTCTA-ATCTATTTTGGTGCAG
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTC-ATTCTGGTGCAG
* * * *
113330146 ATGGCAAGAAAGCGAGTGGACATACTGTAACTCCTCTTGCTCCCAAAAAGAAGGCAAAGTTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
*
113330211 ACT-CCTAAAAAATCAAGCAGATTTTC
195 ACTCCCTAAAAGA-CAAGCAGATTTTC
* * *
113330237 CCTCCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAAAAATGGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCC
* * * * * * *
113330302 ATTTCATCTATTGTAAAATATGTTCCTTATTTCTAATTTCTCCGTTCTAGTTTATTCTGGTGCAT
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * * * *
113330367 ATGGCAAGAAAGCGGGTGGACATACTACAACCCTTCTTGCACCCAAAAAGAAGGTAAAACTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* *
113330432 ACTCCCTAAAAGACAGGCAAGCTTTAT-
195 ACTCCCTAAAAGACAAGC-AGATTT-TC
* * * * * *
113330459 -CTACTATATTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATAAGAGATCATAATGCCTA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * * *
113330523 TTTCGTTAATTGTAAAATGTGTTCTTTA-TATCCAATTTCTCCATTCTAGTTTATTCTGATGCAG
66 TTTCGTCAATTGTAAAATGTGTTCCTTACT-TCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
** * * *
113330587 ATAACAAGAAAGCGAGTGGACATACTGCAACCCTTCCTACTCCTAAAAAGAAGGCAAAGCTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * *
113330652 ATTCCCCAAAAGACAAGTAGATTTTC
195 ACTCCCTAAAAGACAAGCAGATTTTC
* * * * **
113330678 CCTCCCATCTTTAACCCTTTTAAAGTTTTTGATTGCTATTTTACTAATGTGGGATCATAATGCCC
1 CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCC
* * * **
113330743 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCGTTCTAGTTTATTCAGGAACAG
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * *
113330808 ATAGCAAGAAATCG-GTGGACATATTGCAACCCCTCCTGCTCTCAAAAAGAAGGCAAAGTTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* *
113330872 ACTCCCCAAAAGACAAGCAGATTTTG
195 ACTCCCTAAAAGACAAGCAGATTTTC
* * *
113330898 CATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCGA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * *
113330963 TTTTGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCGTTTTAGTTCATTCTGGTGCAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
** * *
113331028 TGGCAAGAAAATGAGTGGACATACTGCAACCCCTTCTACTCCCAAAAAGAAGGCAAAGCTGGTCA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * * **
113331093 TTCTCGAAAAGACAAGCAGCCTTTC
196 CTCCCTAAAAGACAAGCAGATTTTC
* * * **
113331118 CTTCCCATATTTTG--CTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCTT
1 CCTCCCAT-CTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCC
* * * ** ***
113331181 GTTTCGTTAATTGTAAAATATGTT-CTGTACTTTTAATTTCTATATTCTAGTTCATTCTGGTGCA
65 ATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA
* * * * * * * * **
113331245 GATGACAAAAAAGCAAGTGGACATACTACAATCCCTCATACTCTCAAAAAGAAGGCAAATTTGGT
129 GATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
*
113331310 CACT-TCTCAAAAGACAAGCAGATTTTC
194 CACTCCCT-AAAAGACAAGCAGATTTTC
* * * * * *
113331337 CATCCCATCTTTGTCCTTCTAGAGATTTTCATTGTTATTTTACTAATAATGGATCATAATGCTCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * * * * * *
113331402 TTT-TTCAACTGTAAAATTTGTTCCTTATTTTCAATTTCTCCTTTTTAGTTCATTCTGATGCAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * * *
113331466 TGGTAAGAAAGCGAGTGGACATACTCCAACCTCTCCTGCTCCCAAAAAAAAGCCAAAGCTGGTTA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* **
113331531 CTCCCAAAAAGACAAGCAGCCTTTC
196 CTCCCTAAAAGACAAGCAGATTTTC
* * * * **
113331556 CTTCCCATCCTT-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATTATAATGCCTG
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * ** **
113331620 TTTCGTTAATTGTAAAATATGTT-CTGTACTTTTAATTTCTCTATTCTAGTTCATTCTGGTGCAG
66 TTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* ** * * * * *
113331684 ATGGCAAAAAAATGAGTGGATATACTACAACCTCTCCTACTCCCAAAAAGAAGGCAAAGCTCGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * *
113331749 AATTCCTAAAA-ATTAAGCAGATTTTC
195 ACTCCCTAAAAGA-CAAGCAGATTTTC
* * *
113331775 CCTCCCATCTTTACCATTCTAGAGATTTTGATTGCTATTTTTACTAATGAGGGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCC
* * * * * *
113331840 ATTTCGTCTATTGTAAAATATGTTCCTTATTTCTAATTTCTCCGTTTTAGTTCATTCTGGTGCAT
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * * *
113331905 ATGGCAAGAAAGCGGGTGGACATTCTACAACCCCTCCTGCACCCAAAAAGAAGGCAAAACTAGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * *
113331970 ACT-CCTCAAAAGACAGGTA-AGTTTTA
195 ACTCCCT-AAAAGACAAGCAGA-TTTTC
* * * * * **
113331996 TCTACCATCTTTGCCTTTCTAGAGATTTTGATTACTATTTTACTAATAAGAGATCATAATGCTTA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * * * * * *
113332061 TTTCGTTAATGGTAAAATGTGTTCTTTACATCCAAATTCTCCATTCTAATTTATTCTGGTGCAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
** * ** * *
113332126 TAACAAGAAAGCGAGTGGACATACTACAACCCCTTATACTCCCAAAAAGAAGGCAAAGCTAGTCA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* *
113332191 CTCCCCAAAAGACAGGCAGATTTTC
196 CTCCCTAAAAGACAAGCAGATTTTC
* * * **
113332216 CCTCCCATCTTTAACCCTTTTAGAGTTTTTGATTGCTATTTTACTAATGCGGGATCATAATGCCC
1 CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCC
* * **
113332281 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCGTTCTAGTTTATTCTGGAACAG
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * *
113332346 ATAGCAAGAAATC-AGGTGGACATATTGCAACCCCTCCTGCTCCAAAAAAGAAGGCAAAGTTGGT
130 ATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
*
113332410 CACTCCCCAAAAGACAAGCAGATTTTC
194 CACTCCCTAAAAGACAAGCAGATTTTC
*
113332437 CATCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * * * **
113332502 TTTCGTCAATTGTAAAATGTGTTCATTATTTCCAATTTCTCTGTTTTAGTTTATTCTCATGCAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * *
113332567 TGGCAAGAAAGTGAGTGGACACACTGCAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* *
113332632 CTCCCGAAAAGACAGGCAG-TCTTTC
196 CTCCCTAAAAGACAAGCAGAT-TTTC
* * ***
113332657 CTTCCCATCTTT-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCATG
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * ** *** *
113332721 TTTCGTTAATTGTAAAATATGTT-CTATACTTTTAATTTCTATATTCTAGTTCATTCTGGTACAG
66 TTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * * * * * *
113332785 ATGACAAAAAAGCGAGTGAACATACTACAATCCTTCATGCTCCCAAAAAGAAGACAAAGTTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
*
113332850 ACTCTCTAAAA-ATCAAGCAGATTTTC
195 ACTCCCTAAAAGA-CAAGCAGATTTTC
* * * * * *
113332876 CCTCCCATCTTTGCCATTCTATAGATTTTGATAGTTATTTTTACTAATGATGGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCC
*
113332941 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAT
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * *
113333006 ATGGCAAGAAAGCGGGTGGACATACTACAACCCCTCCTGCTCCTAAAAAAAAGGCAAAGCTAGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
*
113333071 ACTGTCC-AAAAGACAAGCAGATTTTC
195 ACT-CCCTAAAAGACAAGCAGATTTTC
* * *
113333097 CCTCCTATCATTGCCCTTCTAGAGATTTTGATTGCTATTTCACTAATAAGGGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * * * * * *
113333162 TTTCGTTACTTGTAAAATGTGTTTCTTACTTCTATTTTCTCTGTTCTAGTTTATTTTGGTGCAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * * * ** *
113333227 TGGCAAGAAAGTGGGTGGATATACTGCAACCCCTCCTGCTCCGAAAAAGAAAGAAAAGCTATTTA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* *
113333292 CT-CCTCAAAAGACAGGCAGGTTTTC
196 CTCCCT-AAAAGACAAGCAGATTTTC
* * * * * **
113333317 CCTCCAATCTTTAACCCTTTTAAAGTTTTTGATTGCTATTTTACTAATGTGGGATCATAATGCCC
1 CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCC
* ** * *
113333382 ATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTATTCTA-TTCCATTTTGCTGCA
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT-CATTCTGGTGCA
* * * *
113333446 GATGGCAAGAAAGCGAGTGGACATACTGTAACTCCTCTTGCTCCCAAAAAGAAGGAAAAGCTGGT
129 GATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
113333511 CACT-CCTCAAAA-ATCAAGCAGATTTTC
194 CACTCCCT-AAAAGA-CAAGCAGATTTTC
* * * * *
113333538 CCTTCCATCTTTGCCATTCTAGAGATTTTGATGGTTATTTTTACTAATAATGGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCC
* * * * * *
113333603 ATTTCGTCAATTGTAAAATGTGTTCCTTATTTCTAATTTCTCCATTGTAGTTCATTCTGGTGTAT
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * * * *
113333668 ATGGCAAGAAAGCGGGTGGATAAACTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGTTGGTT
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * *
113333733 ACTCCCCAAAAGACATGCAGGTTTTC
195 ACTCCCTAAAAGACAAGCAGATTTTC
* * * * *
113333759 TCTACCATCTTTTCCCTT-TAAGAGATTTTGATTGCTATTTTACTAATGAGAGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCT-AGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCC
* * * * *
113333823 ATTTCGTTAATTGTAAAATGTGTTCCTTACATCTAATTTCTCCATTCTAGTTTATTCTGGTGCAG
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * * *
113333888 ATAGTAATAAAGCGAGTGGAAATACTGCAACCCCTCCTACTCCCAAAAAGAAGGAAAAGCTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* *
113333953 ACTCCCCAAAAGACAGGCAGATTTTC
195 ACTCCCTAAAAGACAAGCAGATTTTC
* * * * ** *
113333979 CCTCCCATCTTTAACCCTTTTAGAGCTTTTAATTGCTATTTTACTAATGTGGGATCATAATACCC
1 CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCC
* * ***
113334044 ATTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATTCTGAAACAG
65 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * **
113334109 ATAGCAAGAAATCGGGTGGACATATTGCAACCCCTCCTGCTCTAAAAAAGAAGGCAAAGCTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* *
113334174 ACTCCCCAAAAGAC-AGACAGATTTTT
195 ACTCCCTAAAAGACAAG-CAGATTTTC
* * * * *
113334200 CATCCTATCTTTGTCCTTCTAGAGAATTTGATTGCTATTTTACTAATAAAGGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * * * * *
113334265 TTTCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCTGTTTTAGTTCATTCTAGTACGGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * *
113334330 TGGTAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAAAATGCAAAGCTGGTCA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * **
113334395 CTCCCGAAAAGACAGGCAGCCTTTC
196 CTCCCTAAAAGACAAGCAGATTTTC
* * **
113334420 CTTCCCATCTTT-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCTG
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * ** **
113334484 TTTCGTTAATTGTAAAATATGTT-TTGTACTTTTAATTTCTCTATTCTAGTTCATTCTGGTGCAG
66 TTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * *
113334548 ATGGCAAAAAAGTGAGTGGACATACTACAACCTCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
130 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * *
113334613 ACTTCCC-AAAAGATAGGCAAATTTTC
195 AC-TCCCTAAAAGACAAGCAGATTTTC
* * * * * * * *
113334639 CTTCCCATATTTTCCATTTTAGATATTTTGATTGCTATTTTACTAATAAGGGATCATAATACCTA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
* * * *
113334704 TTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTATTCGTTCTAGTTCATTCTGGTGTAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * *
113334769 TGGCAAGAAAGCGAGTGGACATATTACAACCCCTCCTACTCCCAAAAATAAGGCAAAGCTGGTTA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * *
113334834 CTCCCTAAAAGA-TAGATAGATTTTT
196 CTCCCTAAAAGACAAG-CAGATTTTC
* * * * **
113334859 CCTCCCATTTTTGCCCTTCTAGAGA-ATTGATTGCTATTTTACTAATGAGAGATTGTAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
** * * * *
113334923 TTTTATTAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCGGATCTAATTCATTCTGGTGCAGA
66 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * **
113334988 TGGCAAGAAAGTGAGTGGACATATTGCAACCCCTCCTGCTCCCAAAAATAAGGCAAAATTGGTCA
131 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* *
113335053 CTCACGAAAAGACAAG
196 CTCCCTAAAAGACAAG
113335069 AAGGCTTTCT
Statistics
Matches: 4652, Mismatches: 771, Indels: 137
0.84 0.14 0.02
Matches are distributed among these distances:
218 68 0.01
219 1126 0.24
220 2042 0.44
221 1387 0.30
222 28 0.01
223 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (220 bp):
CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
CTCCCTAAAAGACAAGCAGATTTTC
Found at i:113330503 original size:441 final size:437
Alignment explanation
Indices: 113329358--113335068 Score: 6352
Period size: 441 Copynumber: 13.0 Consensus size: 437
113329348 TGCAACCCCT
* * *
113329358 CCTCCCATCTTTGCCCCTT-TAGAGATTTTGATTGTTAGTTTACTAATAAAGATCATAATGCCCA
1 CCTCCCATCTTTG-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGATCATAATGCCCA
* * * *
113329422 TTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTAGTGCAGA
65 TTTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * * *
113329487 TGGCAAGAAAGCGGGTGAACATACTGCAACCGCTCTTGCTCCCAAAAAGAAGGCAAAGCTAGTCA
130 TGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * *
113329552 CTCCCTAAAAGAC-AGAAAGATTTTCCCTCCCATCTTTGCCCTTCTAAAGATTTTGATTACTATT
195 CTCCCTAAAAGACAAG-CAGATTTT-CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
* * *
113329616 TTACTAATAAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCTTACTTCCAATTTC
258 TTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTC
** ** * * * * * * * * *
113329681 TCCATTCTAGTTCATTCTTATATAAATGACAAAAAAGTGGGTAGACCTACTACAACCCCTCTTGC
323 TCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGC
* * * *
113329746 TCCCAAAAAGAAGGGAAAGCTAGTTACTCTCCAAAAGTCAAGCAGATTTTC
388 TCCCAAAAAGAAGGCAAAGCTGGTCACTC-CCAAAAGACAAGCAGATTTTC
*
113329797 CCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAG-GATCATAATGCCCA
* * *
113329862 TTTCGT-TAATTGTAAAATGTGTTTCTTACTTCCATTTTCTCCGTTCTAGTTCATTTTGGTGCAG
65 TTTCGTCT-ATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * *
113329926 ATGGCAAGAAAGTGGGTGGACATACTGCAACCCCTCCTGCTCCGAAAAAGAAGGCAAAGCTGTTC
129 ATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * * *
113329991 ACTCCCCAAAAGATAAGCAGGTTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTACTATT
194 ACTCCCTAAAAGACAAGCAGATTTT-CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
*
113330056 TTACTAATGAGTGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTC
258 TTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTC
* ** * * * * *
113330121 ACTGTTCTA-ATCTATTTTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGTAACTCCTCTTG
323 TCCATTCTAGTTC-ATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTG
* * *
113330185 CTCCCAAAAAGAAGGCAAAGTTGGTCACTCCTAAAAAATCAAGCAGATTTTC
387 CTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCAAAAGA-CAAGCAGATTTTC
* *
113330237 CCTCCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAAAAATGGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAA-GGATCATAATGCCC
* * * * * *
113330302 ATTTCATCTATTGTAAAATATGTTCCTTATTTCTAATTTCTCCGTTCTAGTTTATTCTGGTGCAT
64 ATTTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * * *
113330367 ATGGCAAGAAAGCGGGTGGACATACTACAACCCTTCTTGCACCCAAAAAGAAGGTAAAACTGGTC
129 ATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * * * * *
113330432 ACTCCCTAAAAGACAGGCAAGCTTTAT-CTACTATATTTGCCCTTCTAGAGATTTTGATTACTAT
194 ACTCCCTAAAAGACAAGC-AGATTT-TCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTAT
* * * *
113330496 TTTACTAATAAGAGATCATAATGCCTATTTCGTTAATTGTAAAATGTGTTCTTTA-TATCCAATT
257 TTTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACT-TCCAATT
* * ** *
113330560 TCTCCATTCTAGTTTATTCTGATGCAGATAACAAGAAAGCGAGTGGACATACTGCAACCCTTCCT
321 TCTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCT
* * * *
113330625 ACTCCTAAAAAGAAGGCAAAGCTGGTCATTCCCCAAAAGACAAGTAGATTTTC
386 GCTCCCAAAAAGAAGGCAAAGCTGGTCACT-CCCAAAAGACAAGCAGATTTTC
* * * * **
113330678 CCTCCCATCTTTAACCCTTTTAAAGTTTTTGATTGCTATTTTACTAATGTGGGATCATAATGCCC
1 CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAGGATCATAATGCCC
* * * * **
113330743 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCGTTCTAGTTTATTCAGGAACAG
64 ATTTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * * * *
113330808 ATAGCAAGAAATCG-GTGGACATATTGCAACCCCTCCTGCTCTCAAAAAGAAGGCAAAGTTGGTC
129 ATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * *
113330872 ACTCCCCAAAAGACAAGCAGATTTTGCATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATT
194 ACTCCCTAAAAGACAAGCAGATTTT-CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
* * * * *
113330937 TTACTAATAAGGGATCATAATGCCGATTTTGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTC
258 TTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTC
* * ** * *
113331002 TCCGTTTTAGTTCATTCTGGTGCAGATGGCAAGAAAATGAGTGGACATACTGCAACCCCTTCTAC
323 TCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGC
* * **
113331067 TCCCAAAAAGAAGGCAAAGCTGGTCATTCTCGAAAAGACAAGCAGCCTTTC
388 TCCCAAAAAGAAGGCAAAGCTGGTCACTC-CCAAAAGACAAGCAGATTTTC
* * * **
113331118 CTTCCCATATTTTG--CTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCTT
1 CCTCCCAT-CTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAGGATCATAATGCCC
* * ** ***
113331181 GTTTCGT-TAATTGTAAAATATGTT-CTGTACTTTTAATTTCTATATTCTAGTTCATTCTGGTGC
64 ATTTCGTCT-ATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGC
* * * * * * * **
113331244 AGATGACAAAAAAGCAAGTGGACATACTACAATCCCTCATACTCTCAAAAAGAAGGCAAATTTGG
127 AGATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGG
* * * *
113331309 TCACT-TCTCAAAAGACAAGCAGATTTTCCATCCCATCTTTGTCCTTCTAGAGATTTTCATTGTT
192 TCACTCCCT-AAAAGACAAGCAGATTTTCC-TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCT
* * * * * * *
113331373 ATTTTACTAATAATGGATCATAATGCTCATTT--TTCAACTGTAAAATTTGTTCCTTATTTTCAA
255 ATTTTACTAATGAGGGATCATAATGCCCATTTCGTT-AATTGTAAAATGTGTTCCTTACTTCCAA
* * * * * *
113331436 TTTCTCCTTTTTAGTTCATTCTGATGCAGATGGTAAGAAAGCGAGTGGACATACTCCAACCTCTC
319 TTTCTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTC
* * * **
113331501 CTGCTCCCAAAAAAAAGCCAAAGCTGGTTACTCCCAAAAAGACAAGCAGCCTTTC
384 CTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCC-AAAAGACAAGCAGATTTTC
* * * * **
113331556 CTTCCCATCCTT-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATTATAATGCCTG
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAGGATCATAATGCCCA
* ** **
113331620 TTTCGT-TAATTGTAAAATATGTT-CTGTACTTTTAATTTCTCTATTCTAGTTCATTCTGGTGCA
65 TTTCGTCT-ATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA
* ** * * * *
113331683 GATGGCAAAAAAATGAGTGGATATACTACAACCTCTCCTACTCCCAAAAAGAAGGCAAAGCTCGT
128 GATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
* * * * *
113331748 CAATTCCTAAAA-ATTAAGCAGATTTTCCCTCCCATCTTTACCATTCTAGAGATTTTGATTGCTA
193 CACTCCCTAAAAGA-CAAGCAGATTTT-CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA
* * *
113331812 TTTTTACTAATGAGGGATCATAATGCCCATTTCGTCT-ATTGTAAAATATGTTCCTTATTTCTAA
256 -TTTTACTAATGAGGGATCATAATGCCCATTTCGT-TAATTGTAAAATGTGTTCCTTACTTCCAA
* * * * * *
113331876 TTTCTCCGTTTTAGTTCATTCTGGTGCATATGGCAAGAAAGCGGGTGGACATTCTACAACCCCTC
319 TTTCTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTC
* * * * * *
113331941 CTGCACCCAAAAAGAAGGCAAAACTAGTCACTCCTCAAAAGACAGGTA-AGTTTTA
384 CTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCC-CAAAAGACAAGCAGA-TTTTC
* * * * **
113331996 TCTACCATCTTTGCCTTTCTAGAGATTTTGATTACTATTTTACTAATAAGAGATCATAATGCTTA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAG-GATCATAATGCCCA
* * * * * * *
113332061 TTTCGT-TAATGGTAAAATGTGTTCTTTACATCCAAATTCTCCATTCTAATTTATTCTGGTGCAG
65 TTTCGTCT-ATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
** ** * *
113332125 ATAACAAGAAAGCGAGTGGACATACTACAACCCCTTATACTCCCAAAAAGAAGGCAAAGCTAGTC
129 ATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * * * *
113332190 ACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTAACCCTTTTAGAGTTTTTGATTGCTAT
194 ACTCCCTAAAAGACAAGCAGATTTT-CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTAT
* * *
113332255 TTTACTAATGCGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTT
257 TTTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTT
* * ** * * *
113332320 CTCCGTTCTAGTTTATTCTGGAACAGATAGCAAGAAATC-AGGTGGACATATTGCAACCCCTCCT
322 CTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCT
* *
113332384 GCTCCAAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAGACAAGCAGATTTTC
386 GCTCCCAAAAAGAAGGCAAAGCTGGTCACT-CCCAAAAGACAAGCAGATTTTC
*
113332437 CATCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAA-GGATCATAATGCCCA
* * * * * * **
113332502 TTTCGTCAATTGTAAAATGTGTTCATTATTTCCAATTTCTCTGTTTTAGTTTATTCTCATGCAGA
65 TTTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * *
113332567 TGGCAAGAAAGTGAGTGGACACACTGCAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
130 TGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* *
113332632 CTCCCGAAAAGACAGGCAG-TCTTTCCTTCCCATCTTT-CCCTTCTAGAGATTTTGATTGCTATT
195 CTCCCTAAAAGACAAGCAGAT-TTTCC-TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
*** * **
113332695 TTACTAATGAGGGATCATAATGCATGTTTCGTTAATTGTAAAATATGTT-CTATACTTTTAATTT
258 TTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCT-TACTTCCAATTT
** * * * * * * * *
113332759 CTATATTCTAGTTCATTCTGGTACAGATGACAAAAAAGCGAGTGAACATACTACAATCCTTCATG
322 CTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTG
* * *
113332824 CTCCCAAAAAGAAGACAAAGTTGGTCACTCTCTAAAA-ATCAAGCAGATTTTC
387 CTCCCAAAAAGAAGGCAAAGCTGGTCACTC-CCAAAAGA-CAAGCAGATTTTC
* * * * *
113332876 CCTCCCATCTTTGCCATTCTATAGATTTTGATAGTTATTTTTACTAATGATGGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAAT-AAGGATCATAATGCCC
* *
113332941 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAT
64 ATTTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * *
113333006 ATGGCAAGAAAGCGGGTGGACATACTACAACCCCTCCTGCTCCTAAAAAAAAGGCAAAGCTAGTC
129 ATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * *
113333071 ACTGTCC-AAAAGACAAGCAGATTTTCCCTCCTATCATTGCCCTTCTAGAGATTTTGATTGCTAT
194 ACT-CCCTAAAAGACAAGCAGATTTT-CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTAT
* * * * * *
113333135 TTCACTAATAAGGGATCATAATGCCCATTTCGTTACTTGTAAAATGTGTTTCTTACTTCTATTTT
257 TTTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTT
** * * * * *
113333200 CTCTGTTCTAGTTTATTTTGGTGCAGATGGCAAGAAAGTGGGTGGATATACTGCAACCCCTCCTG
322 CTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTG
* * * ** * * *
113333265 CTCCGAAAAAGAAAGAAAAGCTATTTACTCCTCAAAAGACAGGCAGGTTTTC
387 CTCCCAAAAAGAAGGCAAAGCTGGTCACTCC-CAAAAGACAAGCAGATTTTC
* * * * * **
113333317 CCTCCAATCTTTAACCCTTTTAAAGTTTTTGATTGCTATTTTACTAATGTGGGATCATAATGCCC
1 CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAGGATCATAATGCCC
** * *
113333382 ATTTCGT-TAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTATTCTA-TTCCATTTTGCTGC
64 ATTTCGTCT-ATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT-CATTCTGGTGC
** * * *
113333445 AGATGGCAAGAAAGCGAGTGGACATACTGTAACTCCTCTTGCTCCCAAAAAGAAGGAAAAGCTGG
127 AGATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGG
* * * *
113333510 TCACT-CCTCAAAA-ATCAAGCAGATTTTCCCTTCCATCTTTGCCATTCTAGAGATTTTGATGGT
192 TCACTCCCT-AAAAGA-CAAGCAGATTTT-CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGC
* * * * *
113333573 TATTTTTACTAATAATGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTATTTCTA
254 TA-TTTTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCA
* * * * * * *
113333638 ATTTCTCCATTGTAGTTCATTCTGGTGTATATGGCAAGAAAGCGGGTGGATAAACTACAACCCCT
318 ATTTCTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCT
* * * * *
113333703 CCTACTCCCAAAAAGAAGGCAAAGTTGGTTACTCCCCAAAAGACATGCAGGTTTTC
383 CCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT-CCCAAAAGACAAGCAGATTTTC
* * * *
113333759 TCTACCATCTTTTCCCTT-TAAGAGATTTTGATTGCTATTTTACTAATGAGAGATCATAATGCCC
1 CCTCCCATCTTTGCCCTTCT-AGAGATTTTGATTGCTATTTTACTAATAAG-GATCATAATGCCC
* * * *
113333823 ATTTCGT-TAATTGTAAAATGTGTTCCTTACATCTAATTTCTCCATTCTAGTTTATTCTGGTGCA
64 ATTTCGTCT-ATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA
* * * * * * *
113333887 GATAGTAATAAAGCGAGTGGAAATACTGCAACCCCTCCTACTCCCAAAAAGAAGGAAAAGCTGGT
128 GATGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
* * * * * *
113333952 CACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTAACCCTTTTAGAGCTTTTAATTGCTA
193 CACTCCCTAAAAGACAAGCAGATTTT-CCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTA
* * * *
113334017 TTTTACTAATGTGGGATCATAATACCCATTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATT
256 TTTTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATT
*** * * * *
113334082 TCTCCATTCTAGTTCATTCTGAAACAGATAGCAAGAAATCGGGTGGACATATTGCAACCCCTCCT
321 TCTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCT
** *
113334147 GCTCTAAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGAC-AGACAGATTTTT
386 GCTCCCAAAAAGAAGGCAAAGCTGGTCACT-CCCAAAAGACAAG-CAGATTTTC
* * * *
113334200 CATCCTATCTTTGTCCTTCTAGAGAATTTGATTGCTATTTTACTAATAAAGGATCATAATGCCCA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAGGATCATAATGCCCA
* * * * * * * *
113334265 TTTCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCTGTTTTAGTTCATTCTAGTACGGA
65 TTTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * *
113334330 TGGTAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAAAATGCAAAGCTGGTCA
130 TGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * **
113334395 CTCCCGAAAAGACAGGCAGCCTTTCCTTCCCATCTTT-CCCTTCTAGAGATTTTGATTGCTATTT
195 CTCCCTAAAAGACAAGCAGATTTTCC-TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTT
** * * **
113334459 TACTAATGAGGGATCATAATGCCTGTTTCGTTAATTGTAAAATATGTT-TTGTACTTTTAATTTC
259 TACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCT-TACTTCCAATTTC
* * * * *
113334523 TCTATTCTAGTTCATTCTGGTGCAGATGGCAAAAAAGTGAGTGGACATACTACAACCTCTCCTGC
323 TCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGC
* * *
113334588 TCCCAAAAAGAAGGCAAAGCTGGTCACTTCCCAAAAGATAGGCAAATTTTC
388 TCCCAAAAAGAAGGCAAAGCTGGTCAC-TCCCAAAAGACAAGCAGATTTTC
* * * * * * * *
113334639 CTTCCCATATTTTCCATTTTAGATATTTTGATTGCTATTTTACTAATAAGGGATCATAATACCTA
1 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAA-GGATCATAATGCCCA
* * * * *
113334704 TTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTATTCGTTCTAGTTCATTCTGGTGTAGA
65 TTTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * *
113334769 TGGCAAGAAAGCGAGTGGACATATTACAACCCCTCCTACTCCCAAAAATAAGGCAAAGCTGGTTA
130 TGGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * * *
113334834 CTCCCTAAAAGA-TAGATAGATTTTTCCTCCCATTTTTGCCCTTCTAGAGA-ATTGATTGCTATT
195 CTCCCTAAAAGACAAG-CAGA-TTTTCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
* ** **
113334897 TTACTAATGAGAGATTGTAATGCCCATTTTATTAATTGTAAAATGTGTTCCTTACTTCCAATTTC
258 TTACTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTC
* * * *
113334962 TCGGA-TCTAATTCATTCTGGTGCAGATGGCAAGAAAGTGAGTGGACATATTGCAACCCCTCCTG
323 TC-CATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTG
* ** *
113335026 CTCCCAAAAATAAGGCAAAATTGGTCACTCACGAAAAGACAAG
387 CTCCCAAAAAGAAGGCAAAGCTGGTCACTC-CCAAAAGACAAG
113335069 AAGGCTTTCT
Statistics
Matches: 4498, Mismatches: 680, Indels: 188
0.84 0.13 0.04
Matches are distributed among these distances:
437 7 0.00
438 468 0.10
439 929 0.21
440 945 0.21
441 1871 0.42
442 275 0.06
443 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (437 bp):
CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGATCATAATGCCCAT
TTCGTCTATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
GGCAAGAAAGCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
TCCCTAAAAGACAAGCAGATTTTCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTA
CTAATGAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCC
ATTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCC
CAAAAAGAAGGCAAAGCTGGTCACTCCCAAAAGACAAGCAGATTTTC
Found at i:113336335 original size:40 final size:38
Alignment explanation
Indices: 113336215--113336346 Score: 141
Period size: 35 Copynumber: 3.6 Consensus size: 38
113336205 TCCTCATTGA
* * *
113336215 AATACCATACTTACATTTTACAACTCGGTATGG--GA-
1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT
* * **
113336250 AATGCCATACCTGCATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGA--TGAT
113336290 AATACCATACCTACATTTCACAACTCAGTATGGATG--
1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT
113336326 -ATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
113336347 CTTTTCTATG
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
35 47 0.58
38 2 0.02
39 2 0.02
40 30 0.37
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.32
Consensus pattern (38 bp):
AATACCATACCTACATTTCACAACTCAGTATGGATGAT
Found at i:113337597 original size:16 final size:17
Alignment explanation
Indices: 113337568--113337602 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
113337558 AAATTATTTT
113337568 AATTCACTAAATTCACC
1 AATTCACTAAATTCACC
*
113337585 AATTCAC-AAATTCTCC
1 AATTCACTAAATTCACC
113337601 AA
1 AA
113337603 AATTCTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (17 bp):
AATTCACTAAATTCACC
Found at i:113339149 original size:46 final size:46
Alignment explanation
Indices: 113339002--113339149 Score: 126
Period size: 46 Copynumber: 3.2 Consensus size: 46
113338992 GTAACCCGCC
*
113339002 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * * *** *
113339051 -CTCA-CGAACTCGGCCTCAACTCAACGAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
113339094 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
113339142 CCT-AGTGA
1 CCTAAGTGA
113339150 CATGTCACTT
Statistics
Matches: 76, Mismatches: 17, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 34 0.45
47 27 0.36
48 9 0.12
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:113340978 original size:220 final size:219
Alignment explanation
Indices: 113340458--113350651 Score: 11383
Period size: 220 Copynumber: 46.5 Consensus size: 219
113340448 ACACTTTCAT
* * * ***
113340458 TCCCATCTTT-CCCTTCTAGATATTTTGATTGTTATTTTACTAATGAGGGATCATAATGCTTGTT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * * *
113340522 TCGTTAATTGTAAAATATGTT-CTTCACTTTCAATTTCTCTGTTCTAGTTCATTTTGGTGGAGAT
66 TCGTCAATTGTAAAATGTGTTCCTT-ACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * * *
113340586 GACAA-AAATACGAGTGAAAATACTGCAA---CTCCTGCTTCCAAAAAGAAGGCAAAGCTGGCCA
130 GGCAAGAAA-GCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* *
113340647 CTCCCCAAAAGACAGACAGATTATCCC
193 CTCCCCAAAAGACAGGCAGATTTTCCC
* * * * *
113340674 TCTCATCTTTGCGCTT-TAGAGATTTTGGTTGCTATTTTACTAATGAGGTATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
** * *
113340738 TCGTCAATTGTAAAATGTGTTCCTTACTTTAAATTTCTTCGTTCTAGTTCATTTTGGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * *
113340803 GCAAGAAAGCGTATGGAAATACTGCAAACCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACT
131 GCAAGAAAGCG-ATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* * *
113340868 CCCCAAAAAATAGACAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * ** * *
113340893 TCCCATCTTTACCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAATGATTATAATACCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
** * * *
113340958 TTATCAAATGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTTAATCTGGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * *
113341023 GCAAGAAAGCGGGTGGACATACTACAACCCCTCTTACTCCCAAAAAGAAGGTAAAGCTAGTCACT
131 GCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* * * *
113341088 CTCTAAAACACAGGAAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * * * ** * *
113341113 TCCTATTTTTTCCCTTCTACAGATTTTGATTCCTATTTTACCAATAAGCAATCATAACGTCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * *
113341178 TCGTAAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTTCATTCTGGTGTAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * ** * *
113341243 GAAAGAAAGCGAGTGGACCTACTATAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGCTAGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* * *
113341308 GCCCAAAAGACAAGCAGATTTTTCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * *
113341333 TCTCATCTTTGCCCTTCTAGAGACTTTGATTGCTATTTTACTAATAAGTGATCATAATACCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * ** *
113341398 TCGTTAATTGTAAAATGTGTTCCTCACTTCC-ATATTCTCTATTCTAG-TCATTCTGGTGCAAAT
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAAT-TTCTCCGTTCTAGTTCATTCTGGTGCAGAT
** * * *
113341461 AACAACAAAGTGGGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
130 GGCAAGAAAG-CGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * *
113341526 ACCCCAAAAGACAAGCAGGTTTTCCC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * *
113341552 TCACATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATGAGTGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * *
113341617 TCGTTAATTGCAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAGTCCA---T--T----ATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * *
113341673 GCAAGAAAGCGAGTAGACATACTGTAACCCCTCTTTCTCTCAAAAAGAAGGCAAAGCTAGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
*
113341738 CCCCAAAA-ATCAAGCAGATTTTCCC
195 CCCCAAAAGA-CAGGCAGATTTTCCC
* * * *
113341763 TCCCATCTTTGCCGTTCTAGATATTTTGATTGTTATTTTTACTAATAAGGGATCATAATACCCAT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCAT
* * *
113341828 TTCGTCAATTGTAAAATGTATTCCTTACTTCCAATTTCACCGTTCTAGTTCATTCTGGTGCATAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * ** * * *
113341893 TGCAAGAAAGCGGGTGGACATACTACAACATCTCCTACTCTCAAAAAGAAGCCAAAGCTGGTCAC
130 GGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * *
113341958 TCCCCAAAAGACATGCAGGTTTTCTC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * *
113341984 TTCCAT-TATGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGTGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * ** *
113342048 TCATTAATTTTAAAATGTGTTCCTTACTTTCAATTTCTCTATTCTAGTTCATTCTGGTGCAGATA
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * ** *
113342113 GCAAGAAAGCGAGTGGACGTGCTGCAACCCCTCCTGCTCCCAAAAATAAAACAAACCTGGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* * * *
113342178 CTCCAAAAGACAGGTAAATTTTCCT
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * * ** *
113342203 TCCAATCTTTGCCCTTTTAGAGCTTTGGATCGCTATTTTACTAATAAGATATCATAATACCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * * * * *
113342268 TTGTTAATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAATTTATTCTAGTGTAGATA
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT-
* * *
113342333 GG-AAGAAAGCGAGTGGACATATTGCAACCCCTCATGCTCCCAAAAAGAA-GCAAAAGCTGGTAA
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGC-AAAGCTGGTCA
** * * * *
113342396 CTTTCTAAAAGACAGGTATATTTTCCA
193 CTCCCCAAAAGACAGGCAGATTTTCCC
* * *
113342423 TCCCATCTTTGGCCTTCTTGAGATTTTGATTGCTATTTTTACTAATGAGGGATCATAATGCCCAT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCAT
* * * * *
113342488 TTCGTCAATTGTAAAATGTGTTTCTTACTTCCAATTTCTTCGTTCTAGTTAATTCTGGTCCATAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * * *
113342553 GGCAAGAAAGCGGGTGGGCATACTACAACCCCTCCTACTCTCAAAAAGAAGGCAAAGTTGGTCAC
130 GGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * *
113342618 TCCCCAAAAGACAGCCAGGTTTTCTC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * ** **
113342644 TCTCATCTTTGCCCTTCTAAAGATTTTGATTGCTATTTTACTAATAAGAAATCATAATATCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * *
113342709 TCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATTCTGGTGCAAATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * *
113342774 ACAACAAATCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
*
113342839 CCCCAAAAAACAGGCAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * *
113342864 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTAATTAATGAGGGATCATAATGCCTATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * * *
113342929 TTGTCAATTGTAAAATATGTTCCTTACTTCCAATTTCTCTGTTCGAGCTCATTCTGGTGCAAATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * * *
113342994 GCAAGAAAGTGGGTCGACATACTGCAATCGCTCCTGCTCCCAAAAAGAAGGTAAAGTTGGTCACT
131 GCAAGAAAG-CGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* *
113343059 CCCCAAAAGGCAGGCAGATTTTCAC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * * *
113343084 TTCCAT-TATTCCCCTTCTAGAGATTTTAATTGCTATTTTACTAATGAGGGATCTTAATACCCAT
1 TCCCATCT-TTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCAT
* * * *
113343148 TTTGTCAATTGTAAATTTTGTTCCTTACTTCCAATTTCTCTGTT-TCAGTTCATTCTGGTGCAGA
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCT-AGTTCATTCTGGTGCAGA
* * * *
113343212 TAGCAAGAAAGCAGGTGGACATACTACAACCCCTCCTCCTCCCAAAAAGAAGGCAAAGCTGGTCA
129 TGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * * * ** *
113343277 ATCCCAAAAAGATAGGTAGAAATTCAC
193 CTCCCCAAAAGACAGGCAGATTTTCCC
* * *** * *
113343304 TCCCATCTTTACCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAATTATTATAATGCACATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
** * * *
113343369 TTATCAATTGTAAAATGTGTTCATTACTTCAAATTTCTCTGTTCTAGTTCATTCTGGTG-ATGAT
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA-GAT
* * * * * * *
113343433 GGCAAGAAAGCGAGTCGACATATTGCAACTCGTCTTGCTCCCAAAAAGAAGGCAAAGTTGCTCAC
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
*
113343498 TCCCCACAAA-ACAGGCAGA-TTTCTC
194 TCCCCA-AAAGACAGGCAGATTTTCCC
* * * *
113343523 TCCCATCATAGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAGTGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * * *
113343588 TCGTTAATTGTAAAATTTGTTTCTTACTTCCAATTTATCTGTTCTAGTTCATTCTGGTGCAGATA
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * * * *
113343653 GCAAGAAAGTGTATGGAAATACAGCAACTCCTCATTCTCTCAAAAAGAAGGCAAAACTGGTCACT
131 GCAAGAAAGCG-ATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* *
113343718 CCCTAAAAGATAGGCAGATTTT---
195 CCCCAAAAGACAGGCAGATTTTCCC
* * ** *
113343740 T--C--C--T-CCCATCTAGAGATTTTGATTGCTATTTTAATAATAAGATATCATAATACCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * *
113343798 TCGTCAATTGTAAAATGTGTTCTTTATTTCCAATTTCTCCGTTCTAGCTCATTCTGGTGCATATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * * *
113343863 GTAAGCAAGTGGGTGGACAAACTGCAACCCCTCCTACTCCCAAAAATAAGGCAAAGCTGGTCACT
131 GCAAGAAAG-CGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* *
113343928 TCCCAAAAGACAGACAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * *
113343953 TCCCATCTTTGCCCTACTAGAGA-TTTGATTGCTATTTTACTAATGAGAGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * *
113344017 TCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTTCGATCTAGTTCATTTTGGTGCAGATA
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * *
113344082 GCAAGAAATAG-GGT-GACATATTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGTTCAC
131 GCAAG-AA-AGCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
** * *
113344145 TCCATAAAAAACAGGCAGATTTTCCA
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * *
113344171 TCGCATCTTT-CCCTTCTAGAGATTTTTATTGCTATTTTACTAATGAGGGATCATAATTCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * ** *
113344235 TCGTTAATTGTAAAATATGTTCTTTACTTTCAATTTCTCTATTCTAGTTCATTCTAGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * * *
113344300 G-AAAAAAACGAGTAGACATACTGTAACCCCTCTTGCTCTCAAAAAGAAGACAAAGCTGGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* *
113344364 TCCCAAAAGACAAGCAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * *
113344389 TCTCATCTTTGCCCCTT-TAGAGATTTTAATTGCTATTTTACTAATAAGGGATCATAATGCCTAT
1 TCCCATCTTTG-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCAT
* * * * *
113344453 TTCGTCAATTGTAAAATCTATTCCTTACTTCAAATTTCACTGTTCTAGTTCATTCTGGTGCAGAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
** * * *
113344518 GGCAAGAAAGCGTATAAACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGTAAAGCTGGCCAC
130 GGCAAGAAAGCG-ATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* *
113344583 TTCCCAAAAGAAAGGCAGATTTTCCC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * *
113344609 ACCCATCTTTGCCCTTTTAGAGATTTTGATTGCCATTTTACTAATAAAGGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* *
113344674 TCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATTCTGGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * *
113344739 GCAAGAAAGGGGGTGGACATACTGCAACCCCTCTTGCTCTCAAAAAGAAGGAAAAGCTAGTCACT
131 GCAAGAAA-GCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* * **
113344804 CCCTAAAAGATAGAAAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * *
113344829 TCCTATCTTTGCCCTTCTAAAGATTTTGATTACTATTTTACTAATAAGGAATCATAATGCCCACT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * *
113344894 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATTCTGGTGTATATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * * * *
113344959 ACAAAAAAGCGAGTAGACCTACTACAACCCTTCTTGCTCCCAAAAAGAAGGCAAAGCTAGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
*** *
113345024 CTAAAAAAGACAAGCAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * *
113345049 TCCCATCTTTACCCTTTTAGAGATTTTGATTGTTATTTTACTAATAAGGGATTATAGTGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * *
113345114 TCGTTAATTGTAAAATGTGTTTCTTACTTCCATTTTCTCCGTTCTAGTTCATTTTGGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* ** * * * *
113345179 GCAAGAAAGTAGGCGGACATACTGCAACCGCTCTTGCTCCAAAAAAGAAGGCAAAGCTGTTCACT
131 GCAAGAAAG-CGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* *
113345244 CCCTAAAAGACAGGCAGGTTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * *
113345269 TCCCGTCTTTGCCCTTCTAGAGATTTTAATTACTATTTTACTAATTAGTGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * ** *
113345334 TCATTAATTGTAAAATATGTTCCTTACTTTCAATTTCTCTATTCTA-TTCCATTCTGGTGCAAAT
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT-CATTCTGGTGCAGAT
* *
113345398 GGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAATGCAAAGCTAGTCAC
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * * *
113345463 TCCCGAAAAGAAAGGTAGCA-TTTCCT
194 TCCCCAAAAGACAGGCAG-ATTTTCCC
* * * ***
113345489 TTCCATCTTT-CCCTTCTAGAGATGTTAATTGCTATTTTACTAATGAA-GGATCATAATGCATGT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAGGGATCATAATGCCCAT
* * * ** ** *
113345552 TTCGTTAATTTTAAAATATGTT-CTGTACTTTTAATTTCTCTATTGTAGTTCATTCTGGTGCAGA
65 TTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * *
113345616 TGGCAAAAAAGCCAGTGGACATACTACAACCCCTCATGTTCCCAAAAAGAAGGCAAAGCTGGTCA
129 TGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* *
113345681 CTCCTCAAAA-ATCAAGCAGATTTTCCC
193 CTCCCCAAAAGA-CAGGCAGATTTTCCC
* * * * * * * *
113345708 TCCCTTCTTTGACATTCTAGAGATTTTTATTGCTATTTTTACTAATGATGAATCATAATGCCTAT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCAT
* * * *
113345773 TTCGTCAATTGTAAAATATGTTCCTCATTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCATAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * * * *
113345838 GGCAAAAAAGCGGGTGGACATACTACAATCCCTCATTCACCCAAAAAGAAGGCAAAGCTGGTCAC
130 GGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* *
113345903 TCCCCAAAAGACAGGCAGGTTTTCTC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * * *
113345929 TACCATCTTTACCCTTCTAAAGATTTTGATTGCTATTTTACTAATGAGAGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* ** * *
113345994 TCGAT-AATTGTAAAATGTGTTCCTTACATCCAATTTCTCTATTCTAGTTTATTCTGCTGCAGAT
66 TCG-TCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * * * *
113346058 AGCACGAAAGTGAGTGGATATACTGCAACCCCTCCTGCTCCCAAAAAGAATGCAAAGTTGGTTAC
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * * *
113346123 TCCCCAAAAAAATAGCCAGATTTTCTC
194 TCCCC-AAAAGACAGGCAGATTTTCCC
* * * * **
113346150 TCCCATCTTTAACCTTTTTAGAGCTTTTGATTGCTATTTTACTAATGTGGGATCATAA-GTCCCA
1 TCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATG-CCCA
* * **
113346214 TTTTGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTTTGGAACAGA
64 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * * * * * *
113346279 TAGCAAGAAATCAAGTGGATATATTGTAACCCCTTCTGATCCAAAAAAGAAGGCAAAGCTGGTCA
129 TGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * *
113346344 C-CCCCAAAAGACAGACAGATTTTTCA
193 CTCCCCAAAAGACAGGCAGATTTTCCC
* * * *
113346370 TCCTATCATTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCTATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * *
113346435 TCGTCAATTGTAAAATGTGTTCCCTATTTCCAATTTCTCCGTGT-TAGTTCATTCTGTTGCAGAT
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGT-TCTAGTTCATTCTGGTGCAGAT
* *
113346499 GGTAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTTCCAAAAAGAAGGCAAAGCTGGTCAC
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* *
113346564 TCCCGAAAAGACAGGCA-ACCTTTT-CT
194 TCCCCAAAAGACAGGCAGA--TTTTCCC
* * * * *
113346590 TTCCATCTTT-CCCTTCTAGAGATATTGATTGCTAGTTTACTAATGAGGGATCATAATGCCTATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * ** ** * * *
113346654 TCGTTAATTGTAAAATATGTT-CTATACTTTTAATTTCTCTATTTTAGATCATTCTGATGCAGAT
66 TCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * ** * *
113346718 GGCAAAAAAGTGAGTGAACATACTAAAACCCCTCCTACCCCCAAAAAGAAGGCAAAGCTGGTCAC
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
*
113346783 TCCCCAAAA-ATCAAGCAGATTTTCCC
194 TCCCCAAAAGA-CAGGCAGATTTTCCC
* * * ** * *
113346809 TCTCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATGAGATATCATAATACCAAT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCAT
* * *
113346874 TTCGTCAATTTTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTTATTCTGGTGCATAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * ** * * * * *
113346939 AGCAAGAAAGTGGTTGGACATACTTTAACCTCTCCTACTCTCAAAAAGAAGGAAAAGCTAGTCAC
130 GGCAAGAAAG-CGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
** * * **
113347004 TCTTCAAAAGACAAGCAAATTTTTTC
194 TCCCCAAAAGACAGGCAGATTTTCCC
*
113347030 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGATATTTTACTAATAAGGGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * * * ** *
113347095 TCATTAATTGTAAAATGTGTTTCTTACTTCTATTTTCTCCGTTCTAGTTCATTTTAATGCAAATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * *
113347160 GCAAGAAAGTGGTGGACATAATACAACCCCTCCTGCTCCGAAAAAGAAGGCAAAGCTGTTCACTC
131 GCAAGAAAGCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTC
*
113347225 CCCAAAAGACAGGCAGGTTTTCCC
196 CCCAAAAGACAGGCAGATTTTCCC
* * * *
113347249 TCACATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATGAGTGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * *
113347314 TCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAATTCATTCTGGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * * *
113347379 GCAAGAAAACGAGTAGACATACTGTAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGTTGCTCATT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* *
113347444 CCCCAAAA-ATCAAGCAGTTTTTCCC
195 CCCCAAAAGA-CAGGCAGATTTTCCC
* * * * *
113347469 TCCCATCTTTGTCATTCTAGAGATTTTGATTGCTATTTTTACTAATGATGGATTATAATGCCCAT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCAT
* * * *
113347534 TTCGTCAATTGTAAAATATGTTCTTTATTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCATAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * * * *
113347599 GGCAAGAAAACGGTTAGACATACTACAACCCTTCCTGCACCCAAAAAGAAGGTAAAGCTGGTCAC
130 GGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * *
113347664 TCCTCAAAAGACAGGCAGGTTTTCTC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * * * * * ** *
113347690 TACTATTTTTACCCTTCTATAGATTTTGATTACAATTTTACTAATAAGATATCATAATGCCTATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * * * *
113347755 TCGTTAATTGTAAAATGTGTTTCTTACATCCAATTTCTCCATTCTAGTTTATTCTGATGCAGATA
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
** * * * *
113347820 GCAAGAAATTGAGTGGAAATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAACTAGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
*
113347885 CCCCAAAAGACAGGAAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * ** * *
113347910 TCCCATCTTTAACCCTTTTAGAGCTTTTAATTGCTATTTTACTAATGTGGGATCATAATACCTAT
1 TCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCAT
* ***
113347975 TTCGTCAATTGTAAAATGTGTTCCTTGCTTCCAATTTCTCCGTTCTAGTTCATTCTGGAATAGAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * *
113348040 AGCAAGAAATCAGGTGGAAATATTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
130 GGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * *
113348105 TCCCCAAAAGATAGACAGATTTTCCA
194 TCCCCAAAAGACAGGCAGATTTTCCC
*
113348131 TCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * *
113348196 TCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCCGTTTTAGTTTATTCTGGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * *
113348261 GTAAGAAAGCGAGTGGAAATACTACAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* * ** **
113348326 CGCGAAAAGACAGGCAGCCTTTCAT
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * * *
113348351 TCCCATCTTT-CCCTT-TATAGATTTTGATTGTTATTTTACTAATGAGGGATCATTATGTCTATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* ** ** ** *
113348414 TCGTTAATTGTAAAACATGTT-CTGTACTTTTAATTTCTCTATTCTAGTTCATTCTGGTACAGAT
66 TCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * * *
113348478 GGCAAAAAAGTGAGTGGACATACTACAACCTCTCCTGCTCCCAAAAAGAAGGAAAATCTGGTCAC
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* *
113348543 TCCCCAAAA-TCAAGCAGATTTTCCC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* *
113348568 TCCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATTAGGGATCATAATGCCCAT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCAT
*
113348633 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCATAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * *
113348698 GGCAAGAAAGCTGGTAGACATACTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCAC
130 GGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* *
113348763 TCCCCAAAAGACAAGCA-AGTTTTCTC
194 TCCCCAAAAGACAGGCAGA-TTTTCCC
* * * * *
113348789 TACCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGAGATCATAATACCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * * * *
113348854 TCGTTAATTGTAAAATGTGTTCTTTACATCCAATTTCTCCCTTTTTAGTTCATTTTGGTACAGAT
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCT-CCGTTCTAGTTCATTCTGGTGCAGAT
* * * *
113348919 AGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTACTTCTAAAAAGAAGGCAAAGCTGGTCAC
130 GGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* *
113348984 TCCCCAAAAGACAGGCAAATTTTTCC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * * * *
113349010 TCCCATCTTTGCCCTTTTAGAGCTTTTGATTGATATTTTACTAATGAGGGATCATATTACCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * *
113349075 TCGTCAATTGTAAAATTTGTTCCTTACTTCTAATTTCTCCGTTCTAGTTTATTCTAGTGCAGATA
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * * * * * *
113349140 GCAAGAAATCGGGTGGAAATATTGCAACCCTTCCTGCTCCCAAAAAGAAGGCAAAGTTGTTTACT
131 GCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* * *
113349205 CCCCGAAAA-ACAAGTAGGTTTTCCC
195 CCCC-AAAAGACAGGCAGATTTTCCC
* * * * *
113349230 TCCTATCTTTGCCCTTCTAGAAATTTTGATTGTTATTTTACTAATGAGGGATCATAATGCTCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * *
113349295 TCTTCAATTGTAAAATGTGTTCCTTACTTCCAATTTTTCCGTTCTAATCCATTCTAGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * ** *
113349360 GCAAGAAAGCAGGTGGACGTATTGCAACCCCTCCTGCTCCCAAAAAGAAAAACAAAGTTGGTCAC
131 GCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAG-AAGGCAAAGCTGGTCAC
*
113349425 TCCCCAAAAGACAGGCAGATTTTCCA
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * * * *
113349451 TCTCTTCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCACAATACCAATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * *
113349516 TCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCATTTTAGTTCGTTCTGGTGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * *
113349581 ACAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAATAACGCAAAGTTGGTCACT
131 GCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
*** * * *
113349646 CTTGAAAAGACAGCCATCA-TTTCCT
195 CCCCAAAAGACAGGCA-GATTTTCCC
* * **
113349671 TCCCATCTTT-CCCTTCTAGGGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCTGTT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * **
113349735 TTGTTAATTGTAAAATATGTT-CTGTACTTTCAATTTCTTAAG-TCTAGTTCATTCTGGTGCAGA
66 TCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTC-TCCGTTCTAGTTCATTCTGGTGCAGA
** * * * *
113349798 TGGCAA-AAAGCGAGTGGACATACTATAACCCTTCCTACTCCCAAAAAGAAGGCAAATCTAGTCA
129 TGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
*
113349862 CTCCCCAAAAGACAGGCA-AGTTTTCTC
193 CTCCCCAAAAGACAGGCAGA-TTTTCCC
* *
113349889 TCTCATCTTTGCCCTTCTA-ATGATTTTGATTGCTATTTTACTAATAAGGGATGATAATGCCCAT
1 TCCCATCTTTGCCCTTCTAGA-GATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCAT
* * * *
113349953 TTCGTTAATTGTAAAATGTGTTTCTTACTTCCATTTTCTCCGTTCTAGTTCATTTTGGTGCAGAT
65 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * * *
113350018 GGCAAGAAAGTGGGTGGATATACTGCAACCCCTCCTGCTCCCAAAAAGAAAGCAAAGCTGTTCAC
130 GGCAAGAAAG-CGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
*
113350083 TCCCCAAAAGACAGGCAGGTTTTCCC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * *
113350109 TTCCATCTTTTCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATTATAATACCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * * *
113350174 TCTTCAATTGTAAAATGTGTTCCTTACTTCCAATTTATCCGTTCTAGTTTATTCTGATGTAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
*
113350239 GCAAGAAAGCGGGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
131 GCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
* *
113350304 CCCCAAAAGATAGGAAGATTTTCCC
195 CCCCAAAAGACAGGCAGATTTTCCC
* * * * *
113350329 TCCAATCTTTGCCATTTTAGAGATTTTAATTGTTATTTTACTAATAAGGGATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
* * * *
113350394 TCGTCAATTGTAAAATTTGTTCCTTACTTCCAATTTATCTGTTCTAGTTCATTCTGATGCAGATG
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
* * * *
113350459 GCAAGAAAGCGGGTAGACATACTGCAACCCCTCCTGCTGCTAAAAAGAAGGCAAAGCTGG-CTAC
131 GCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC-AC
* * * * *
113350523 TCCCTAAGAGATAGGCAGAATTTCAC
194 TCCCCAAAAGACAGGCAGATTTTCCC
* * * **
113350549 TCCCATTTTTGCCCTTCTAGAGA-ATTGATTGCTATTTTACTAATGAGATATCATAATGCCCATT
1 TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
** **
113350613 TTATTTATTGTAAAATGTGTTCCTTACTTCCAATTTCTC
66 TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTC
113350652 ATATCAGAAA
Statistics
Matches: 8414, Mismatches: 1414, Indels: 297
0.83 0.14 0.03
Matches are distributed among these distances:
210 172 0.02
211 107 0.01
212 72 0.01
213 2 0.00
215 5 0.00
216 127 0.02
217 51 0.01
218 493 0.06
219 1802 0.21
220 3957 0.47
221 1457 0.17
222 169 0.02
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (219 bp):
TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATT
TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
GCAAGAAAGCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTC
CCCAAAAGACAGGCAGATTTTCCC
Found at i:113351933 original size:40 final size:39
Alignment explanation
Indices: 113351871--113351971 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 39
113351861 GTTTTCCTCA
**
113351871 TTGAAATACCATACCTACATTTCTTAACTCAATATGGAT
1 TTGAAATACCATACCTACATTTCACAACTCAATATGGAT
* *
113351910 TTGATAATACCATACCTATATTTCACAACTCAGTATGGA-
1 TTGA-AATACCATACCTACATTTCACAACTCAATATGGAT
113351949 -T--AATACCATACCTACATTTCACA
1 TTGAAATACCATACCTACATTTCACA
113351972 CTTTGCCATG
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
35 21 0.38
38 1 0.02
39 4 0.07
40 30 0.54
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.34
Consensus pattern (39 bp):
TTGAAATACCATACCTACATTTCACAACTCAATATGGAT
Found at i:113354133 original size:18 final size:18
Alignment explanation
Indices: 113354110--113354150 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
113354100 TACTTTTCTC
113354110 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
113354128 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
113354146 TTTCT
1 TTTCT
113354151 TTTTTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:113355389 original size:25 final size:24
Alignment explanation
Indices: 113355353--113355399 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
113355343 TGTAACTTTC
*
113355353 TTTCTTTTTTTTACTTCTTTTAGG
1 TTTCTTTGTTTTACTTCTTTTAGG
*
113355377 TTTCATTTGTTTTATTTCTTTTA
1 TTTC-TTTGTTTTACTTCTTTTA
113355400 TATTATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.11, C:0.11, G:0.06, T:0.72
Consensus pattern (24 bp):
TTTCTTTGTTTTACTTCTTTTAGG
Found at i:113356429 original size:220 final size:220
Alignment explanation
Indices: 113356047--113358538 Score: 3142
Period size: 220 Copynumber: 11.4 Consensus size: 220
113356037 GGTCATTACA
* ** * * *
113356047 TGTAAAATATGTTCCTTACTTTAAATTTCTTCGTTCTAGTTCATTTTGGTGCAGATGACAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * * * *
113356112 GCGTA-TGGAAATACTGTAACCTCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCTAAA
66 GCG-AGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* * * *
113356176 AGACAGGCAGATTTTCCTTCCCACCTTTGCCCTTCAAGAGATTTTGATTGCTATTTTACTAATAA
130 AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA
* * *
113356241 GGGATCATATTACCCATTTCGTCAGT
195 GGGATCATAATGCCCATTTCGTCAAT
** * * *
113356267 TGTAAAATGTGTTTTTTACTTCCAATTTATCCGTTCTAGTTCATTTTGGTGGAGATGGCAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * *
113356332 GCGGGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAATGCTGGTTACTCCCCAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
*
113356397 GACATGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA-TTTGATTGCTATTTTACTAATGAG
131 GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
* ** *
113356461 AGATCATAATGCCCATTTTATTAAT
196 GGATCATAATGCCCATTTCGTCAAT
* * ** * *
113356486 TGTAAAATGTGTTTCTTACTTTCAATTTCTCCAATCTAGTTCATTCTGGTGTAGATGGCAAAAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * * * * * * *
113356551 GTGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAATAACGCAAAACTGGTCATTCTCGAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
* ** * *
113356616 GACAGGAAGGCTTTCCTTTCCATCTTT-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
131 GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
* ** *
113356680 AGATCATAATGCCTGTTTCGTTAAT
196 GGATCATAATGCCCATTTCGTCAAT
* ** * * * * *
113356705 TGTAAAATATGTTATTTACTTTCAATTTCTCTGTTCTAGTTTATTCTGGTGCAGATAGCAAAAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * *
113356770 GCGAGTGGACATATTGCAACCTCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
** *
113356835 GACAGGCAGATTTTCCCTCTGATCTTTGCCCTTCTAGAGATTTTGGTTGCTATTTTACTAATGAG
131 GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
* * *
113356900 GTATCATAATACCCATTTTGTCAAT
196 GGATCATAATGCCCATTTCGTCAAT
* * * *
113356925 TGTAAAATGTGCTCCTTACTTCAAATTTCTCTGTTCTAGTTCATTCTGGTGCAGATGGAAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * * * *
113356990 G-GATATGGACATATTGCAACCCCTCCTACTCCAAAAAAGAAGGCAAAGCTGGTCATTCCCCAAA
66 GCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* * * *
113357054 AAATAGGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTATTTTACTAATAA
130 AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA
** *
113357119 ATGATCATAATGCCCATTTCATCAAT
195 GGGATCATAATGCCCATTTCGTCAAT
* * *
113357145 TATAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTACAGAGGGCAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * * * *
113357210 GCGGGTGGACATACTGCAACCCCTCTTGCTCCCAAAAAGAAGTCAAAGCTAGTCACTCCCTAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
* * *
113357275 -ATCAAGCAGATTTCCCCTCCCATCTTTAG-CCTTCTAGAGATTTTGATTGCTATTTTACTAATA
131 GA-CAGGCAGATTTTCCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATG
* *
113357338 AAGGATTATAATTGCCCATTTCGTCAAT
194 AGGGATCATAA-TGCCCATTTCGTCAAT
* * * *
113357366 GGTAAAATGTGTTCCTTACTTCTAATTTCTCCGATCTAGTTCATTTTGGTGCAGATGGCAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* ** *
113357431 GCGAAT-GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAATTGGTGACTCCCCAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
* * * *
113357495 GACAGGCAGACTTTCCGTCCCATCTTT-CCCTTCTAGAAATTTTAATTGCTATTTTACTAATGAG
131 GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
* * *
113357559 GGATCATAATGCCCGTTTTGTTAAT
196 GGATCATAATGCCCATTTCGTCAAT
* * * * ** *
113357584 TGTAAAATATGTTCTTTACTTTCAATTTATCTATTCTAGTTCATTCTGGTGCAGATGG-AAAAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * *
113357648 GCGAGTGGACATACTACAACCCCTCCTGCTCCCAAAAAGAAGGTAAAACTGGTCACTCCCCAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
* * * **
113357713 GACAAGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGCTTTTGATTATTATTTTACTAATGAG
131 GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
113357778 GGATCATAATGCCCA-TT--TC-A-
196 GGATCATAATGCCCATTTCGTCAAT
* *
113357798 --T-AAAT-TG----TAACTTCCAATTTCTCCATTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * * * * * *
113357855 TCAAGTGGACATATTGCAACCCCTCTTGCTTCCAAAAAGAAGGCAAAGTTGTTCACTCCCCAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
* * * * * * * *
113357920 AACAGGCAGGTTTTCCCACCTATTTTTGCCCTTTTAGGGATTTTGATTGTTATTTTACTAATGAG
131 GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
** *
113357985 GGATCATAATGCTTATTTCATCAAT
196 GGATCATAATGCCCATTTCGTCAAT
* * *
113358010 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATTCTAGTGTAGATGGCAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* **
113358075 GC-AGGTGGACGTACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAATTGGTCACTCCCCAAA
66 GCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* * * * *
113358139 AAACAGGCAAATTTTCCATCCCATCTTTGTCGTTCTAGAGATTTTGATTGCTATTTTACTAATGA
130 AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA
113358204 GGGATCATAATGCCCATTTCGTCAAT
195 GGGATCATAATGCCCATTTCGTCAAT
* * * * *
113358230 TGTAAAATGTGTTTCTTATTTCCAATTTCTCCGTTTTAGTTCATTTTGGTGCAGATGGCAACAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
* * * *
113358295 GCGAGTGGACATACTACAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCTCCAAAA
66 GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
* * * * *
113358360 GACAGGCAGGTTTTCCCTCCCATCTTTTCCTTTTTAAAGATTTTGATTGCTATTTTACTAATGAG
131 GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
*
113358425 GGATCATAATGCCTATTTCGTCAAT
196 GGATCATAATGCCCATTTCGTCAAT
* *
113358450 TGTAAAATGTGTTCCTTACTTCAAATTTCTCCGTTCTAGTTCATTCTTGTGCAGATGGCAAGAAA
1 TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
*
113358515 GC-ATATGGACATACTGCAACCCCT
66 GCGA-GTGGACATACTGCAACCCCT
113358539 TACCCTTCCA
Statistics
Matches: 1964, Mismatches: 279, Indels: 58
0.85 0.12 0.03
Matches are distributed among these distances:
206 39 0.02
207 129 0.07
208 2 0.00
210 4 0.00
211 5 0.00
212 1 0.00
214 1 0.00
215 5 0.00
216 3 0.00
217 10 0.01
218 153 0.08
219 440 0.22
220 1091 0.56
221 81 0.04
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (220 bp):
TGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAA
GCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA
GACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAG
GGATCATAATGCCCATTTCGTCAAT
Found at i:113359146 original size:20 final size:21
Alignment explanation
Indices: 113359123--113359173 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
113359113 TAAATCAAAT
113359123 AAATTATTTATAAA-AATT-TA
1 AAATTATTTA-AAAGAATTATA
113359143 AAATTATTTAAAAGAATTATA
1 AAATTATTTAAAAGAATTATA
113359164 AAATATATTT
1 AAAT-TATTT
113359174 TTTTTTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.11
20 14 0.50
21 6 0.21
22 5 0.18
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AAATTATTTAAAAGAATTATA
Found at i:113359465 original size:14 final size:16
Alignment explanation
Indices: 113359446--113359476 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
113359436 TAATTATTTT
113359446 CAAA-ATTTTATATAG
1 CAAATATTTTATATAG
113359461 CAAATATTTTATATAG
1 CAAATATTTTATATAG
113359477 TACTCACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (16 bp):
CAAATATTTTATATAG
Found at i:113365786 original size:18 final size:19
Alignment explanation
Indices: 113365763--113365802 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
113365753 TATGCATTTT
*
113365763 TTTAATGTGAT-TTTAAGG
1 TTTAATGTGATATTTAAAG
*
113365781 TTTAATTTGATATTTAAAG
1 TTTAATGTGATATTTAAAG
113365800 TTT
1 TTT
113365803 TTCGGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (19 bp):
TTTAATGTGATATTTAAAG
Found at i:113365934 original size:31 final size:30
Alignment explanation
Indices: 113365863--113365939 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 30
113365853 TAAAGTCAAG
113365863 TTTAGGTACCTAA-TTAAACCTAAAAAAAATC
1 TTTAGGTACC-AATTTAAACCTAAAAAAAA-C
* *
113365894 TTTAAGTACCAATTTAAACCTCAAAATTAAA-
1 TTTAGGTACCAATTTAAACCT-AAAA-AAAAC
113365925 TTTAGGTACCAATTT
1 TTTAGGTACCAATTT
113365940 GTATATTTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
30 2 0.05
31 31 0.77
32 4 0.10
33 3 0.08
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (30 bp):
TTTAGGTACCAATTTAAACCTAAAAAAAAC
Found at i:113365974 original size:6 final size:6
Alignment explanation
Indices: 113365963--113365991 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
113365953 TTTATACCTA
113365963 AATTTG AATTTG AATTTG AATTTG AATTT
1 AATTTG AATTTG AATTTG AATTTG AATTT
113365992 AAGTTTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
AATTTG
Found at i:113368047 original size:14 final size:15
Alignment explanation
Indices: 113367993--113368039 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
113367983 ATAACTTAAA
113367993 TTCAACACTTAATTT
1 TTCAACACTTAATTT
* *
113368008 TCCAATACTTAATTT
1 TTCAACACTTAATTT
113368023 TTCAACACTTAATTT
1 TTCAACACTTAATTT
113368038 TT
1 TT
113368040 TTAACTTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.49
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:113368332 original size:8 final size:7
Alignment explanation
Indices: 113368307--113368335 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
113368297 AAGTTGATGT
113368307 GTTTTTA
1 GTTTTTA
113368314 -TTTTTA
1 GTTTTTA
113368320 GTTTTTA
1 GTTTTTA
113368327 GTTTTTA
1 GTTTTTA
113368334 GT
1 GT
113368336 AATGTTATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (7 bp):
GTTTTTA
Found at i:113370839 original size:50 final size:50
Alignment explanation
Indices: 113370764--113370940 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
113370754 CCATGGCAAC
* *
113370764 AAGTGATAAGTGATAGCTTCGGCTACATTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
113370814 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* *
113370864 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* **
113370914 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
113370941 CTGATCAGTG
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
50 96 0.81
51 23 0.19
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
Found at i:113370954 original size:31 final size:31
Alignment explanation
Indices: 113370916--113371095 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
113370906 ACAAATGACA
113370916 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
113370947 AGTGAAAAGTGGTAGCTTCGGCTACCTGATA
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
113370978 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
113371009 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
113371040 AATGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
113371071 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
113371096 AAGTGATTTC
Statistics
Matches: 134, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
30 1 0.01
31 131 0.98
32 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:113371269 original size:49 final size:48
Alignment explanation
Indices: 113371188--113371282 Score: 138
Period size: 49 Copynumber: 2.0 Consensus size: 48
113371178 GCATTAGTGA
*
113371188 GATATGTGATTCGTGTATAACCATAGCCGGGCTATGGCATCGATATGT
1 GATATGTGATTCGTGTATAACCATAGCCGGGCTATGACATCGATATGT
* *
113371236 GATATGTGATTACTTGTA-AGACCATAGCTGGGCTATGACATCGATAT
1 GATATGTGATT-CGTGTATA-ACCATAGCCGGGCTATGACATCGATAT
113371283 ATGAAGATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 12 0.29
49 30 0.71
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (48 bp):
GATATGTGATTCGTGTATAACCATAGCCGGGCTATGACATCGATATGT
Found at i:113376674 original size:19 final size:19
Alignment explanation
Indices: 113376650--113376690 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
113376640 TTAAATTGTT
*
113376650 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
113376669 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
113376688 TTA
1 TTA
113376691 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:113378472 original size:39 final size:39
Alignment explanation
Indices: 113378418--113378713 Score: 493
Period size: 39 Copynumber: 7.5 Consensus size: 39
113378408 TAATGGAGAA
113378418 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
113378457 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
113378496 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
113378535 TTATTTCCGGGCTAAGTCCTGAAGGCATTGGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
113378574 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
113378613 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
113378652 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
113378691 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
113378714 CATGCTTTGT
Statistics
Matches: 242, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 233 0.96
40 1 0.00
41 8 0.03
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:113387076 original size:29 final size:30
Alignment explanation
Indices: 113387017--113387074 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
113387007 TCCGAGCCTT
*
113387017 GGGGAAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAAATGTAATTATGAAAAAGTTTA
* * *
113387047 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAAATGTAATTATGAAAAAGTT
113387075 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAATGTAATTATGAAAAAGTTTA
Found at i:113387304 original size:13 final size:13
Alignment explanation
Indices: 113387286--113387317 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
113387276 TTTCCAGAAA
113387286 TTATGAATTTATT
1 TTATGAATTTATT
113387299 TTATGAATTTATT
1 TTATGAATTTATT
*
113387312 TGATGA
1 TTATGA
113387318 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:113387525 original size:50 final size:50
Alignment explanation
Indices: 113387412--113387653 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
113387402 ATTTGGGTAA
* * *
113387412 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
113387468 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113387518 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
113387568 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
113387618 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
113387654 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:113387601 original size:100 final size:103
Alignment explanation
Indices: 113387412--113387661 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
113387402 ATTTGGGTAA
113387412 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
113387477 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
113387518 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
113387580 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
113387618 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
113387662 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Done.