Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 344 of 349
Found at i:113393099 original size:3 final size:3
Alignment explanation
Indices: 113393091--113393120 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
113393081 ATAAATTCAA
*
113393091 GAT GAT GAT GAT GAT GAT GAT GTT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
113393121 AAAGAGGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (3 bp):
GAT
Found at i:113394149 original size:16 final size:17
Alignment explanation
Indices: 113394124--113394158 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
113394114 TATTTATGAA
113394124 TTTTATATTTATATTAT
1 TTTTATATTTATATTAT
113394141 TTTTA-ATTTATATTAT
1 TTTTATATTTATATTAT
113394157 TT
1 TT
113394159 ATGAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATATTTATATTAT
Found at i:113406724 original size:26 final size:27
Alignment explanation
Indices: 113406678--113406736 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
113406668 GTTGTTGATT
* *
113406678 TTTATTTTCTTTTTCTTTTTATTATAA
1 TTTATTTTCGTTTTATTTTTATTATAA
* *
113406705 TTTATTTT-GTTTTATTTTTATTTTTA
1 TTTATTTTCGTTTTATTTTTATTATAA
113406731 TTTATT
1 TTTATT
113406737 GTGAATTTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.17, C:0.03, G:0.02, T:0.78
Consensus pattern (27 bp):
TTTATTTTCGTTTTATTTTTATTATAA
Found at i:113415564 original size:101 final size:101
Alignment explanation
Indices: 113415385--113415839 Score: 380
Period size: 101 Copynumber: 4.4 Consensus size: 101
113415375 CAAAGTTTAG
* * * * * * **
113415385 AACTATCCATAGTCCCTCC-CTAACCCTTAAATAAGAAGATAATATGCTTCAATGCACTC-AAAC
1 AACTACCCATAGCCCCTCCTC-AACCTTTAAATAAGAGGATAATGTGCTTTAGCGCACTCGAAA-
* * * *
113415448 CCATGTCCTCTTGCATTGGCAACAATGCTCTTGCCTAA
64 TCACGTCCTCCTGCATTGGCAACAATGCTCATGCCTAA
* * * * *
113415486 AACTATCTATAGCCCCTCCTCAACCTTTAAATAGGAGGATAATTTGCTTTAGCGCACTCGAAATT
1 AACTACCCATAGCCCCTCCTCAACCTTTAAATAAGAGGATAATGTGCTTTAGCGCACTCGAAATC
* * * *
113415551 ATGTCCTCCTGCATTGGTAACAAAGCTCATGCCCAA
66 ACGTCCTCCTGCATTGGCAACAATGCTCATGCCTAA
** * * * *
113415587 AACTACCCATAGTACCTCCCCAACCCTTAAATAAGAGGATAATGTGTTTTAGTGCACTC-AAACT
1 AACTACCCATAGCCCCTCCTCAACCTTTAAATAAGAGGATAATGTGCTTTAGCGCACTCGAAA-T
* * *
113415651 CACATCCTCCTACATTGGCAACAATGCTCATGCTTAGAA
65 CACGTCCTCCTGCATTGGCAACAATGCTCATGCCT--AA
* * * * *
113415690 CTACACATAACCCATTAACCCCTCATCAACCTTTAAATAGGAGGATAATGTACTTCAGCGCACTC
1 --A-AC-T-ACCCA-TAGCCCCTCCTCAACCTTTAAATAAGAGGATAATGTGCTTTAGCGCACTC
** * * *
113415755 GAACCCACGTCTTCTTGCATTGGCAACAATGCTCATGCCTAG
60 GAAATCACGTCCTCCTGCATTGGCAACAATGCTCATGCCTAA
* *
113415797 AACTATCCATAGTCCCTCC-CTAA-CTCTTAAATAAGAGGATAAT
1 AACTACCCATAGCCCCTCCTC-AACCT-TTAAATAAGAGGATAAT
113415840 ATACTTTATC
Statistics
Matches: 282, Mismatches: 58, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
100 6 0.02
101 181 0.64
102 8 0.03
103 3 0.01
104 2 0.01
105 2 0.01
106 2 0.01
107 2 0.01
108 5 0.02
109 69 0.24
110 2 0.01
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (101 bp):
AACTACCCATAGCCCCTCCTCAACCTTTAAATAAGAGGATAATGTGCTTTAGCGCACTCGAAATC
ACGTCCTCCTGCATTGGCAACAATGCTCATGCCTAA
Found at i:113415791 original size:210 final size:202
Alignment explanation
Indices: 113415385--113415841 Score: 545
Period size: 210 Copynumber: 2.2 Consensus size: 202
113415375 CAAAGTTTAG
*
113415385 AACTATCCATAGTCCCTCCCTAACCCTTAAATAAGAAGATAATATGCTTCAATGCACTCAAACCC
1 AACTATCCATAGTCCCTCCCTAACCCTTAAATAAGAGGATAATATGCTTCAATGCACTCAAACCC
** * * * * * * *
113415450 ATGTCCTCTTGCATTGGCAACAATGCTCTTGCCTAAAACTATCTATAGCCCCTCCTCAACCTTTA
66 ACATCCTCCTACATTGGCAACAATGCTCATGCCTAAAACTACCCATAACCCCTCATCAACCTTTA
* * * ** * *
113415515 AATAGGAGGATAATTTGCTTTAGCGCACTCGAAATTATGTCCTCCTGCATTGGTAACAAAGCTCA
131 AATAGGAGGATAATGTACTTCAGCGCACTCGAAACCACGTCCTCCTGCATTGGCAACAAAGCTCA
113415580 TGCCCAA
196 TGCCCAA
* * * * * * * *
113415587 AACTACCCATAGTACCTCCCCAACCCTTAAATAAGAGGATAATGTGTTTTAGTGCACTCAAACTC
1 AACTATCCATAGTCCCTCCCTAACCCTTAAATAAGAGGATAATATGCTTCAATGCACTCAAACCC
*
113415652 ACATCCTCCTACATTGGCAACAATGCTCATGCTTAGAACTACACATAACCCATTAACCCCTCATC
66 ACATCCTCCTACATTGGCAACAATGCTCATGCCT--AA--A-AC-T-ACCCA-TAACCCCTCATC
* * *
113415717 AACCTTTAAATAGGAGGATAATGTACTTCAGCGCACTCGAACCCACGTCTTCTTGCATTGGCAAC
123 AACCTTTAAATAGGAGGATAATGTACTTCAGCGCACTCGAAACCACGTCCTCCTGCATTGGCAAC
* * *
113415782 AATGCTCATGCCTAG
188 AAAGCTCATGCCCAA
*
113415797 AACTATCCATAGTCCCTCCCTAACTCTTAAATAAGAGGATAATAT
1 AACTATCCATAGTCCCTCCCTAACCCTTAAATAAGAGGATAATAT
113415842 ACTTTATCAC
Statistics
Matches: 210, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
202 84 0.40
204 2 0.01
206 1 0.00
207 2 0.01
208 1 0.00
209 3 0.01
210 117 0.56
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (202 bp):
AACTATCCATAGTCCCTCCCTAACCCTTAAATAAGAGGATAATATGCTTCAATGCACTCAAACCC
ACATCCTCCTACATTGGCAACAATGCTCATGCCTAAAACTACCCATAACCCCTCATCAACCTTTA
AATAGGAGGATAATGTACTTCAGCGCACTCGAAACCACGTCCTCCTGCATTGGCAACAAAGCTCA
TGCCCAA
Found at i:113415884 original size:101 final size:99
Alignment explanation
Indices: 113415382--113415887 Score: 349
Period size: 101 Copynumber: 4.9 Consensus size: 99
113415372 ATACAAAGTT
* * *
113415382 TAGAACTATCCATAGTCCCTCCCTAACCCTTAAATAAGAAGATAATATGCTTCAATGCAC-TCAA
1 TAGAACTATCCATAGTCCCTCCCTAA-CCTTAAATAAGAGGATAATATGCTT-TAT-CACATCGA
* * * *
113415446 ACCCATGTCCTCTTGCATTGGCAACAATGCTCTTGCC
63 ACCTACGTCCTCCTGCATTGGCAACAATGCTCATGCC
* * * * * * *
113415483 TAAAACTATCTATAGCCCCT-CCTCAACCTTTAAATAGGAGGATAATTTGCTTTAGCGCACTCGA
1 TAGAACTATCCATAGTCCCTCCCT-AACC-TTAAATAAGAGGATAATATGCTTTATCACA-TCGA
** * * *
113415547 AATTATGTCCTCCTGCATTGGTAACAAAGCTCATGCC
63 ACCTACGTCCTCCTGCATTGGCAACAATGCTCATGCC
* * * * * * *
113415584 CAAAACTACCCATAGTACCTCCCCAACCCTTAAATAAGAGGATAATGTGTTTTAGTGCAC-TC-A
1 TAGAACTATCCATAGTCCCTCCCTAA-CCTTAAATAAGAGGATAATATGCTTTA-T-CACATCGA
* * * *
113415647 AACTCACATCCTCCTACATTGGCAACAATGCTCATGCT
63 ACCT-ACGTCCTCCTGCATTGGCAACAATGCTCATGCC
* * * * * *
113415685 TAGAACTA-CACATA-ACCCATTAACCCCTCATCAACCTTTAAATAGGAGGATAATGTACTTCAG
1 TAGAACTATC-CATAGTCCC--T----CC-C-T-AACC-TTAAATAAGAGGATAATATGCTTTAT
* * * *
113415748 CGCACTCGAACCCACGTCTTCTTGCATTGGCAACAATGCTCATGCC
55 CACA-TCGAACCTACGTCCTCCTGCATTGGCAACAATGCTCATGCC
* *
113415794 TAGAACTATCCATAGTCCCTCCCTAACTCTTAAATAAGAGGATAATATACTTTATCACATTTGAA
1 TAGAACTATCCATAGTCCCTCCCTAAC-CTTAAATAAGAGGATAATATGCTTTATCACA-TCGAA
* * *
113415859 CCTACGTCCTCCTACACTGACAACAATGC
64 CCTACGTCCTCCTGCATTGGCAACAATGC
113415888 CAATGCTAAT
Statistics
Matches: 312, Mismatches: 67, Indels: 52
0.72 0.16 0.12
Matches are distributed among these distances:
99 2 0.01
100 13 0.04
101 205 0.66
102 7 0.02
103 3 0.01
104 2 0.01
106 2 0.01
107 3 0.01
108 3 0.01
109 65 0.21
110 7 0.02
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (99 bp):
TAGAACTATCCATAGTCCCTCCCTAACCTTAAATAAGAGGATAATATGCTTTATCACATCGAACC
TACGTCCTCCTGCATTGGCAACAATGCTCATGCC
Found at i:113424241 original size:21 final size:21
Alignment explanation
Indices: 113424205--113424276 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 21
113424195 TTTAATATTA
* *
113424205 TAAATAAAATACATTTTTTAT
1 TAAATTAAATAAATTTTTTAT
*
113424226 TAATATT-AATAAATTTTATAAT
1 TAA-ATTAAATAAATTTT-TTAT
113424248 TAAATTAAATAAATATTTTTTTAT
1 TAAATTAAAT-AA-A-TTTTTTAT
113424272 TAAAT
1 TAAAT
113424277 AGTAACTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
21 15 0.37
22 11 0.27
23 2 0.05
24 9 0.22
25 4 0.10
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (21 bp):
TAAATTAAATAAATTTTTTAT
Found at i:113424258 original size:22 final size:21
Alignment explanation
Indices: 113424205--113424266 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
113424195 TTTAATATTA
* * *
113424205 TAAATAAAATACATTTTTTAT
1 TAAATTAAATAAATTTTTAAT
113424226 TAATATT-AATAAATTTTATAAT
1 TAA-ATTAAATAAATTTT-TAAT
113424248 TAAATTAAATAAATATTTT
1 TAAATTAAATAAAT-TTTT
113424267 TTTATTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 15 0.44
22 16 0.47
23 3 0.09
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TAAATTAAATAAATTTTTAAT
Found at i:113435120 original size:144 final size:144
Alignment explanation
Indices: 113434861--113435275 Score: 604
Period size: 144 Copynumber: 2.9 Consensus size: 144
113434851 GAAATTTAGT
* * *
113434861 CCTTAATCTCAGTTCAGTCGGTATTATTGTTATTACAGTAA-T--GAGGACGAGGGTTCAGATAC
1 CCTTAATCTCAATTCAGTC-GCATTATTGTTATTACAGTAATTAGGAGGACGTGGGTTCAGATAC
*
113434923 ACTTAACTGTTTTTTCTTTCAATTTAAAGGGTGGGAATGGGTTATGGGCAATGATGTTTAAACCA
65 ACTTAACTGATTTTTCTTTCAATTTAAAGGGTGGGAATGGGTTATGGGCAATGATGTTTAAACCA
*
113434988 GATACACTTTCTGTA
130 GATACACTCTCTGTA
* **
113435003 CCTTAATCTCAATTCAGTCAGCATTATTGTTATTACAATAATTAGGAGGACGTGGGTTCAGATGT
1 CCTTAATCTCAATTCAGTC-GCATTATTGTTATTACAGTAATTAGGAGGACGTGGGTTCAGATAC
* * *
113435068 ACTTAACT-ATTTTTCTTTCAATTTAAAGGATGGGAATGGGTTATAGGTAATGATGTTTAAACCA
65 ACTTAACTGATTTTTCTTTCAATTTAAAGGGTGGGAATGGGTTATGGGCAATGATGTTTAAACCA
113435132 GATACACTCTCTGTA
130 GATACACTCTCTGTA
* * *
113435147 CCTTAATCTCAATTTAGTCGACATTATTGCTATTACAGTAATTAGGAGGACGTGGGTTCATATAC
1 CCTTAATCTCAATTCAGTCG-CATTATTGTTATTACAGTAATTAGGAGGACGTGGGTTCAGATAC
* * * * *
113435212 ACTTAAGTGCTTTTTCTTTCAATTTAAAGGGTGAGAGTGGGTTATGGGCAATAATGTTTAAACC
65 ACTTAACTGATTTTTCTTTCAATTTAAAGGGTGGGAATGGGTTATGGGCAATGATGTTTAAACC
113435276 TGGTTAAAAA
Statistics
Matches: 242, Mismatches: 26, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
142 37 0.15
143 2 0.01
144 130 0.54
145 73 0.30
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (144 bp):
CCTTAATCTCAATTCAGTCGCATTATTGTTATTACAGTAATTAGGAGGACGTGGGTTCAGATACA
CTTAACTGATTTTTCTTTCAATTTAAAGGGTGGGAATGGGTTATGGGCAATGATGTTTAAACCAG
ATACACTCTCTGTA
Found at i:113437121 original size:97 final size:97
Alignment explanation
Indices: 113436953--113437138 Score: 259
Period size: 97 Copynumber: 1.9 Consensus size: 97
113436943 ATACGTGGAC
* * * *
113436953 ATATTATGTTTAAAGGGAGTTGTCTAAATGAACATCATTTGATTATCAAACTAATTACGAGTGTT
1 ATATTATGTCTAAAGGGAGTTGTCTAAATGAACATCATTCGACTATCAAACCAATTACGAGTGTT
113437018 CTTTTTATTCTCGAATGTTGATATACATGCAT
66 CTTTTTATTCTCGAATGTTGATATACATGCAT
* * *
113437050 ATATTATGTCTAAAGGGAGTTGTCTAAATGAACATCATTCGGCTATTAGACCAATTACGAG-GAT
1 ATATTATGTCTAAAGGGAGTTGTCTAAATGAACATCATTCGACTATCAAACCAATTACGAGTG-T
* *
113437114 T-TGTTTTATTTTTGAATGTTGATAT
65 TCT-TTTTATTCTCGAATGTTGATAT
113437139 TAACAGCGAG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
96 2 0.03
97 76 0.97
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (97 bp):
ATATTATGTCTAAAGGGAGTTGTCTAAATGAACATCATTCGACTATCAAACCAATTACGAGTGTT
CTTTTTATTCTCGAATGTTGATATACATGCAT
Found at i:113445856 original size:22 final size:21
Alignment explanation
Indices: 113445809--113445861 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
113445799 ATATTTACTA
113445809 TTTTTTAAAAGATAAATAAAT
1 TTTTTTAAAAGATAAATAAAT
* * **
113445830 ATTTTTAAAAGGATAATTGGAT
1 TTTTTTAAAA-GATAAATAAAT
113445852 TTTTTTAAAA
1 TTTTTTAAAA
113445862 ATTAATTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (21 bp):
TTTTTTAAAAGATAAATAAAT
Found at i:113453105 original size:18 final size:19
Alignment explanation
Indices: 113453070--113453111 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
113453060 AAACTGTTTG
* **
113453070 ATTAATAAATTATTAAAA-
1 ATTAATAAAATAAAAAAAT
113453088 ATTAATAAAATAAAAAAAT
1 ATTAATAAAATAAAAAAAT
113453107 ATTAA
1 ATTAA
113453112 AAATTGGTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAATAAAATAAAAAAAT
Found at i:113464356 original size:20 final size:21
Alignment explanation
Indices: 113464331--113464370 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
113464321 ATATTTTAGT
*
113464331 AATAATTA-AATTAAAAAATA
1 AATAATTATAAATAAAAAATA
113464351 AATAATTATAAATAAAAAAT
1 AATAATTATAAATAAAAAAT
113464371 TCATACCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AATAATTATAAATAAAAAATA
Found at i:113467393 original size:3 final size:3
Alignment explanation
Indices: 113467385--113467462 Score: 113
Period size: 3 Copynumber: 26.0 Consensus size: 3
113467375 TAGAAGAGTC
* * *
113467385 TGA TGA TGA AGA TGA TGA AGA TGA TGA TGA -GTC TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA
113467430 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
113467463 AACAATGGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
2 1 0.01
3 65 0.97
4 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.33, T:0.31
Consensus pattern (3 bp):
TGA
Found at i:113468138 original size:14 final size:15
Alignment explanation
Indices: 113468119--113468167 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
113468109 ATTATTGAAC
113468119 TATTTAAAAAATT-T
1 TATTTAAAAAATTAT
*
113468133 TATTTAAATAATTAT
1 TATTTAAAAAATTAT
* *
113468148 ATTTTTAAAAAATTGT
1 -TATTTAAAAAATTAT
113468164 TATT
1 TATT
113468168 GTTCGCGTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 12 0.43
15 4 0.14
16 12 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
TATTTAAAAAATTAT
Found at i:113476238 original size:21 final size:22
Alignment explanation
Indices: 113476212--113476258 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
113476202 CTCTGCTCAA
*
113476212 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
113476233 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
113476255 ACTC
1 ACTC
113476259 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:113478711 original size:360 final size:360
Alignment explanation
Indices: 113478049--113478711 Score: 1308
Period size: 360 Copynumber: 1.8 Consensus size: 360
113478039 AACATAATTG
113478049 AAACGAAACAGTCTTTTCTTCATATGCAACTTATTTTGACTGTTCTTCTTCAAGAATTTCTCCTC
1 AAACGAAACAGTCTTTTCTTCATATGCAACTTATTTTGACTGTTCTTCTTCAAGAATTTCTCCTC
*
113478114 CAATGCTTTCCACAATTTACTTGCAGAAGTCTCTTTACTGAATGTATACTTTTGCTCTCTGGAAA
66 CAATGCTTTCCACAATTTACTTGCAGAAGTCTCTTTACTGAATGTATACTTTTGCTCTCTAGAAA
113478179 GACATGATCGAATTGTACCACATGCCAATCGGTTGATGGTCTTCCATTCTTTATCATCAACCCCT
131 GACATGATCGAATTGTACCACATGCCAATCGGTTGATGGTCTTCCATTCTTTATCATCAACCCCT
113478244 TCTGGTTTTTCTTCCTCAATGGCAATATCTAGACCCTGTTGAAAGAGGGCATCTAGAAGCTCACT
196 TCTGGTTTTTCTTCCTCAATGGCAATATCTAGACCCTGTTGAAAGAGGGCATCTAGAAGCTCACT
113478309 TTGCCACATGCCGAAATGACCTGTTCCATCAAAAACTTCCACTTCGTACATTTTGCCGAGGATTG
261 TTGCCACATGCCGAAATGACCTGTTCCATCAAAAACTTCCACTTCGTACATTTTGCCGAGGATTG
113478374 GAACTGCAAATACGAGATTTGTAGTGGAAATTTTT
326 GAACTGCAAATACGAGATTTGTAGTGGAAATTTTT
113478409 AAACGAAACAGTCTTTTCTTCATATGCAACTTATTTTGACTGTTCTTCTTCAAGAATTTCTCCTC
1 AAACGAAACAGTCTTTTCTTCATATGCAACTTATTTTGACTGTTCTTCTTCAAGAATTTCTCCTC
113478474 CAATGCTTTCCACAATTTACTTGCAGAAGTCTCTTTACTGAATGTATACTTTTGCTCTCTAGAAA
66 CAATGCTTTCCACAATTTACTTGCAGAAGTCTCTTTACTGAATGTATACTTTTGCTCTCTAGAAA
113478539 GACATGATCGAATTGTACCACATGCCAATCGGTTGATGGTCTTCCATTCTTTATCATCAACCCCT
131 GACATGATCGAATTGTACCACATGCCAATCGGTTGATGGTCTTCCATTCTTTATCATCAACCCCT
113478604 TCTGGTTTTTCTTCCTCAATGGCAATATCTAGACCCTGTTGAAAGAGGGCATCTAGAAGCTCACT
196 TCTGGTTTTTCTTCCTCAATGGCAATATCTAGACCCTGTTGAAAGAGGGCATCTAGAAGCTCACT
*
113478669 TTGCCACATGCCGAAATGACCTGTTCCATCAAAAATTTCCACT
261 TTGCCACATGCCGAAATGACCTGTTCCATCAAAAACTTCCACT
113478712 ACAAATATCG
Statistics
Matches: 301, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
360 301 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (360 bp):
AAACGAAACAGTCTTTTCTTCATATGCAACTTATTTTGACTGTTCTTCTTCAAGAATTTCTCCTC
CAATGCTTTCCACAATTTACTTGCAGAAGTCTCTTTACTGAATGTATACTTTTGCTCTCTAGAAA
GACATGATCGAATTGTACCACATGCCAATCGGTTGATGGTCTTCCATTCTTTATCATCAACCCCT
TCTGGTTTTTCTTCCTCAATGGCAATATCTAGACCCTGTTGAAAGAGGGCATCTAGAAGCTCACT
TTGCCACATGCCGAAATGACCTGTTCCATCAAAAACTTCCACTTCGTACATTTTGCCGAGGATTG
GAACTGCAAATACGAGATTTGTAGTGGAAATTTTT
Found at i:113481272 original size:8 final size:8
Alignment explanation
Indices: 113481265--113481296 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
113481255 TGTATACATT
*
113481265 CAACCATT
1 CAACCATC
113481273 CAACCATC
1 CAACCATC
113481281 CAACCATC
1 CAACCATC
113481289 CAACCATC
1 CAACCATC
113481297 ACATGTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.38, C:0.47, G:0.00, T:0.16
Consensus pattern (8 bp):
CAACCATC
Found at i:113482143 original size:2 final size:2
Alignment explanation
Indices: 113482136--113482160 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
113482126 TACAAAAAGA
113482136 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
113482161 ATAACACTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:113487056 original size:132 final size:131
Alignment explanation
Indices: 113486815--113487057 Score: 362
Period size: 132 Copynumber: 1.8 Consensus size: 131
113486805 AAACGGAGAC
* * * * *
113486815 AATGTCGATGTTTGGCAATTCGAGGAATCGTGCCCTACTGTGCTGGGTTGCAATTTCTCGTTTGC
1 AATGTCGATGTTTAGCAATTCGAGGAATAGTGCCCTACTGTGCTGGGTTGCAATCTCCCATTTGC
* *
113486880 TCAAAATAATCGAATATCTCTTTAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAAGGAAGG
66 TCAAAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAAGGAAGG
113486945 A
131 A
*
113486946 AATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCTA-TCGTGCTGGGTTGCAATCTCCCATTT
1 AATG-TCGATGTTTAGCAATTCGAGGAATAGTGCCCTACT-GTGCTGGGTTGCAATCTCCCATTT
* * *
113487010 GTTCAAAATAATCGAATATCCCTTCGGAATTTCATTCGTGTTTTCTAA
64 GCTCAAAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAA
113487058 GGCGAGGCAA
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
131 5 0.05
132 94 0.95
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (131 bp):
AATGTCGATGTTTAGCAATTCGAGGAATAGTGCCCTACTGTGCTGGGTTGCAATCTCCCATTTGC
TCAAAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAAGGAAGG
A
Found at i:113491098 original size:58 final size:58
Alignment explanation
Indices: 113491036--113491149 Score: 131
Period size: 58 Copynumber: 2.0 Consensus size: 58
113491026 ATTTGGTATT
* * * *
113491036 TTTTTGGTTCAATTAAACACCTGAA-TTTGTTTTTAAGGTTCAATTTAGTACTTAAAAG
1 TTTTTGATCCAATTAAACACCTGAACTTGGTTTTTAA-GTTCAAATTAGTACTTAAAAG
* ** * *
113491094 TTTTTTATCCAATTAAGTACCTGAACTTGGTTTTTTAGTTCAAATTGGTACTTAAA
1 TTTTTGATCCAATTAAACACCTGAACTTGGTTTTTAAGTTCAAATTAGTACTTAAA
113491150 CTTGATTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
58 37 0.80
59 9 0.20
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (58 bp):
TTTTTGATCCAATTAAACACCTGAACTTGGTTTTTAAGTTCAAATTAGTACTTAAAAG
Found at i:113491152 original size:31 final size:31
Alignment explanation
Indices: 113491094--113491178 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 31
113491084 TACTTAAAAG
* * *
113491094 TTTTTTA-TCC-AATTAAGTACCTGAACTTGG
1 TTTTTTACTCCAAATT-AGTACTTAAACTTGA
* * *
113491124 TTTTTTAGTTCAAATTGGTACTTAAACTTGA
1 TTTTTTACTCCAAATTAGTACTTAAACTTGA
113491155 TTTTTTACTCCAAATTAGTACTTA
1 TTTTTTACTCCAAATTAGTACTTA
113491179 CAGTAAATGG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
30 7 0.16
31 34 0.76
32 4 0.09
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.47
Consensus pattern (31 bp):
TTTTTTACTCCAAATTAGTACTTAAACTTGA
Found at i:113496056 original size:111 final size:111
Alignment explanation
Indices: 113495862--113496083 Score: 311
Period size: 111 Copynumber: 2.0 Consensus size: 111
113495852 CTAAGGTAAA
* * *
113495862 TCAAGACACATCATAATACCATTCTACTTAAGCTTATGACACTAGATCACTTGTCATTTATCTCT
1 TCAAGACACATCATAACACCATTCTACTTAAGCCTATGACACTAAATCACTTGTCATTTATCTCT
* *
113495927 AATCCACCAATAGTGAATCAACACGTGGCACCTCGAGACGGGAGAC
66 AATCCACCAATAGTGAATCAACACGTGACACCTCGAGACGGAAGAC
* * * *
113495973 TCAAGGCACGTCATAACACCATTCTACTTAAGCCTATGGCACTAAATCACTTGTTATTTATC-CT
1 TCAAGACACATCATAACACCATTCTACTTAAGCCTATGACACTAAATCACTTGTCATTTATCTC-
* ** *
113496037 TAGTTTACTAATAGTGAATCAACACGTGACACCTCGAGACGGAAGAC
65 TAATCCACCAATAGTGAATCAACACGTGACACCTCGAGACGGAAGAC
113496084 AACATGTAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
110 1 0.01
111 96 0.99
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (111 bp):
TCAAGACACATCATAACACCATTCTACTTAAGCCTATGACACTAAATCACTTGTCATTTATCTCT
AATCCACCAATAGTGAATCAACACGTGACACCTCGAGACGGAAGAC
Found at i:113500783 original size:16 final size:16
Alignment explanation
Indices: 113500759--113500791 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
113500749 TAATTAATAA
*
113500759 ATTTTTTTTATTAACC
1 ATTTGTTTTATTAACC
113500775 ATTTGTTTTATTAACC
1 ATTTGTTTTATTAACC
113500791 A
1 A
113500792 ATCTGTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (16 bp):
ATTTGTTTTATTAACC
Found at i:113500798 original size:17 final size:16
Alignment explanation
Indices: 113500764--113500799 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
113500754 AATAAATTTT
*
113500764 TTTTATTAACCATTTG
1 TTTTATTAACCATCTG
113500780 TTTTATTAACCAATCTG
1 TTTTATTAACC-ATCTG
113500797 TTT
1 TTT
113500800 GAAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.25, C:0.14, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTTATTAACCATCTG
Found at i:113501274 original size:21 final size:21
Alignment explanation
Indices: 113501250--113501293 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
113501240 ACAAATACAT
* *
113501250 AATGAACATATTACGTGCTAA
1 AATGAACAAATTAAGTGCTAA
113501271 AATGAACAAATTAAGTGCTAA
1 AATGAACAAATTAAGTGCTAA
113501292 AA
1 AA
113501294 CTCTCATATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.11, G:0.14, T:0.25
Consensus pattern (21 bp):
AATGAACAAATTAAGTGCTAA
Found at i:113509631 original size:14 final size:14
Alignment explanation
Indices: 113509612--113509646 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
113509602 CCACTTTTTA
113509612 TTTATTATTATTGT
1 TTTATTATTATTGT
113509626 TTTATTATTATTGT
1 TTTATTATTATTGT
113509640 TTTATTA
1 TTTATTA
113509647 ATTTTTCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (14 bp):
TTTATTATTATTGT
Found at i:113520004 original size:9 final size:9
Alignment explanation
Indices: 113519992--113520026 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
113519982 TTCTTTTTAC
113519992 TAAAAAAAT
1 TAAAAAAAT
113520001 TAAAATTAAAT
1 TAAAA--AAAT
113520012 TAAAAAAAT
1 TAAAAAAAT
113520021 TAAAAA
1 TAAAAA
113520027 TAAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 15 0.62
11 9 0.38
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:113520019 original size:21 final size:20
Alignment explanation
Indices: 113519992--113520035 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
113519982 TTCTTTTTAC
* *
113519992 TAAAAAAATTAAAATTAAAT
1 TAAAAAAATTAAAAATAAAA
113520012 TAAAAAAATTAAAAATAAAA
1 TAAAAAAATTAAAAATAAAA
113520032 TAAA
1 TAAA
113520036 TTTTCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (20 bp):
TAAAAAAATTAAAAATAAAA
Found at i:113528734 original size:30 final size:29
Alignment explanation
Indices: 113528653--113528736 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
113528643 TAAGTTCTTA
113528653 TATATTTTATAAA-TTTAAAATTTAATCCT
1 TATATTTT-TAAATTTTAAAATTTAATCCT
*
113528682 TATATTTTT--ATTTTCAAGAATTTAATTCT
1 TATATTTTTAAATTTT-AA-AATTTAATCCT
*
113528711 TTTACTTTTTAAATTTTAAAATTTAA
1 TATA-TTTTTAAATTTTAAAATTTAA
113528737 GTTAAATTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
26 1 0.02
27 3 0.06
28 3 0.06
29 21 0.45
30 12 0.26
31 2 0.04
32 5 0.11
ACGTcount: A:0.37, C:0.06, G:0.01, T:0.56
Consensus pattern (29 bp):
TATATTTTTAAATTTTAAAATTTAATCCT
Found at i:113536803 original size:18 final size:18
Alignment explanation
Indices: 113536763--113536804 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
113536753 AATACAATTG
*
113536763 AATAAATTATTAAAAAAT
1 AATAAATTATTAAAAAAA
*
113536781 TATAAA-TATTAAAATAAA
1 AATAAATTATTAAAA-AAA
113536799 AATAAA
1 AATAAA
113536805 AATAAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAAATTATTAAAAAAA
Found at i:113540282 original size:31 final size:30
Alignment explanation
Indices: 113540237--113540300 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
113540227 AAACACTCAT
*
113540237 TTAAATATT-AAAAAAATTGTATTTAAATTA
1 TTAAATATTAAAAAAAAAT-TATTTAAATTA
*
113540267 TTAAATTATTCAAAAAAAATTATTTAAATTA
1 TTAAA-TATTAAAAAAAAATTATTTAAATTA
113540298 TTA
1 TTA
113540301 GACTATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 5 0.16
31 18 0.58
32 8 0.26
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (30 bp):
TTAAATATTAAAAAAAAATTATTTAAATTA
Found at i:113545701 original size:16 final size:16
Alignment explanation
Indices: 113545682--113545721 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
113545672 TTCAAACCTG
*
113545682 AAAAAATTTGAGTCTA
1 AAAAAATTTAAGTCTA
*
113545698 AAAAAGTTTAAGTCTA
1 AAAAAATTTAAGTCTA
*
113545714 AGAAAATT
1 AAAAAATT
113545722 GAAACTTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (16 bp):
AAAAAATTTAAGTCTA
Found at i:113546552 original size:27 final size:27
Alignment explanation
Indices: 113546496--113546551 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
113546486 AGAAATATAT
*
113546496 AAATTTACATAAATATTTAAAAAATTA
1 AAATTTACATAAATATTTAAAAAATAA
* * *
113546523 AAATTTATATTAATA-TTAAATAATAA
1 AAATTTACATAAATATTTAAAAAATAA
113546549 AAA
1 AAA
113546552 AAAAACCTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
AAATTTACATAAATATTTAAAAAATAA
Found at i:113553657 original size:73 final size:73
Alignment explanation
Indices: 113553538--113553756 Score: 366
Period size: 73 Copynumber: 3.0 Consensus size: 73
113553528 GGCTTCCTCA
* *
113553538 GCAGAAAAGCTTGTTCTGTTTACAAGCTCAAGTTGGGGTTGGCTGAGCAACACCAGTAGCAATGG
1 GCAGAAAAGCTTGTTCTTTTTACAAGCTCAAGTTGGGGTTGGCTGAGCAACACCAGCAGCAATGG
113553603 ACAATGGT
66 ACAATGGT
* * * *
113553611 GCAGAAAAGCTTGTTGTTTTTAGAAGCTCAAGTTGGGGTTGGCTGAGAAACACCAGCAGTAATGG
1 GCAGAAAAGCTTGTTCTTTTTACAAGCTCAAGTTGGGGTTGGCTGAGCAACACCAGCAGCAATGG
*
113553676 GCAATGGT
66 ACAATGGT
*
113553684 GCAGAAAAGCTTGTTCTTTTTACAAGCTCAAGTTGGAGTTGGCTGAGCAACACCAGCAGCAATGG
1 GCAGAAAAGCTTGTTCTTTTTACAAGCTCAAGTTGGGGTTGGCTGAGCAACACCAGCAGCAATGG
113553749 ACAATGGT
66 ACAATGGT
113553757 ACAAATGGGT
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 133 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (73 bp):
GCAGAAAAGCTTGTTCTTTTTACAAGCTCAAGTTGGGGTTGGCTGAGCAACACCAGCAGCAATGG
ACAATGGT
Found at i:113554586 original size:16 final size:16
Alignment explanation
Indices: 113554567--113554634 Score: 50
Period size: 16 Copynumber: 4.3 Consensus size: 16
113554557 ATATTTAAAG
113554567 TAAAATTTTATTAATA
1 TAAAATTTTATTAATA
** * *
113554583 TAAAAAGTAAATAATAA
1 TAAAATTTTATTAAT-A
* *
113554600 TAAATTTTTA-TAA-G
1 TAAAATTTTATTAATA
113554614 TAAAATTTTATTAATA
1 TAAAATTTTATTAATA
*
113554630 GAAAA
1 TAAAA
113554635 AGTAAATAAT
Statistics
Matches: 37, Mismatches: 12, Indels: 6
0.67 0.22 0.11
Matches are distributed among these distances:
14 9 0.24
15 3 0.08
16 18 0.49
17 7 0.19
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (16 bp):
TAAAATTTTATTAATA
Found at i:113554618 original size:47 final size:47
Alignment explanation
Indices: 113554560--113554657 Score: 180
Period size: 47 Copynumber: 2.1 Consensus size: 47
113554550 ACATTGCATA
*
113554560 TTTA-AAGTAAAATTTTATTAATATAAAAAGTAAATAATAATAAATT
1 TTTATAAGTAAAATTTTATTAATAGAAAAAGTAAATAATAATAAATT
113554606 TTTATAAGTAAAATTTTATTAATAGAAAAAGTAAATAATAATAAATT
1 TTTATAAGTAAAATTTTATTAATAGAAAAAGTAAATAATAATAAATT
113554653 TTTAT
1 TTTAT
113554658 GTTAAATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 4 0.08
47 46 0.92
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (47 bp):
TTTATAAGTAAAATTTTATTAATAGAAAAAGTAAATAATAATAAATT
Found at i:113554957 original size:17 final size:17
Alignment explanation
Indices: 113554916--113554948 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
113554906 TATATATGTA
113554916 TAATAAATATATAAAAT
1 TAATAAATATATAAAAT
113554933 TAATAAATAT-TAAAAT
1 TAATAAATATATAAAAT
113554949 CTATAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATAAATATATAAAAT
Found at i:113556911 original size:20 final size:21
Alignment explanation
Indices: 113556872--113556913 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
113556862 GGGTTTATTA
*
113556872 ATTTTTATTTAATATTAATAT
1 ATTTATATTTAATATTAATAT
*
113556893 ATTTATATTTTAT-TTAATAT
1 ATTTATATTTAATATTAATAT
113556913 A
1 A
113556914 AATATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTATATTTAATATTAATAT
Found at i:113556925 original size:26 final size:26
Alignment explanation
Indices: 113556874--113556925 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
113556864 GTTTATTAAT
* **
113556874 TTTTATTTAATATTAATATATTTATA
1 TTTTATTTAATATAAATATAAATATA
113556900 TTTTATTTAATATAAATATAAATATA
1 TTTTATTTAATATAAATATAAATATA
113556926 AAATTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TTTTATTTAATATAAATATAAATATA
Found at i:113559698 original size:16 final size:16
Alignment explanation
Indices: 113559665--113559698 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
113559655 TTCACCTGTT
* *
113559665 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
113559681 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
113559697 AA
1 AA
113559699 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:113562525 original size:21 final size:21
Alignment explanation
Indices: 113562499--113562539 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
113562489 AGACGAGCAA
* *
113562499 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
113562520 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
113562540 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:113564476 original size:16 final size:16
Alignment explanation
Indices: 113564443--113564476 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
113564433 GGAGATTGTT
* *
113564443 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
113564459 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
113564475 AA
1 AA
113564477 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:113574687 original size:20 final size:20
Alignment explanation
Indices: 113574662--113574703 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
113574652 TTTTTTAACT
113574662 TAAAGTTAATTTATTTTTTC
1 TAAAGTTAATTTATTTTTTC
113574682 TAAAGTTAATTTATTTTTTC
1 TAAAGTTAATTTATTTTTTC
113574702 TA
1 TA
113574704 TCTAAAGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.60
Consensus pattern (20 bp):
TAAAGTTAATTTATTTTTTC
Found at i:113580793 original size:63 final size:64
Alignment explanation
Indices: 113580665--113580795 Score: 219
Period size: 63 Copynumber: 2.1 Consensus size: 64
113580655 ATTTGTTTCT
*
113580665 TGAAGTACTCTGTGTCTCGCACTTGTATCCGTAGTATATCCTGATTCCAAAGACCCCAAATACA
1 TGAAGTACTCTGTGTCTCACACTTGTATCCGTAGTATATCCTGATTCCAAAGACCCCAAATACA
* * *
113580729 TGAAGTCCTCTGTGTCTCACACTTGTATCCG-AGTATATCCTGATTCCAAGGACTCCAAATACA
1 TGAAGTACTCTGTGTCTCACACTTGTATCCGTAGTATATCCTGATTCCAAAGACCCCAAATACA
113580792 TGAA
1 TGAA
113580796 AAATCTTATG
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
63 34 0.54
64 29 0.46
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (64 bp):
TGAAGTACTCTGTGTCTCACACTTGTATCCGTAGTATATCCTGATTCCAAAGACCCCAAATACA
Found at i:113581963 original size:3 final size:3
Alignment explanation
Indices: 113581955--113581988 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
113581945 GAATAACCTC
113581955 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
113581989 GCATTAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:113591009 original size:16 final size:17
Alignment explanation
Indices: 113590990--113591022 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
113590980 TAGTCGAAAT
113590990 ATTT-AAAAAAATAAAA
1 ATTTAAAAAAAATAAAA
113591006 ATTTGAAAAAAAATAAA
1 ATTT-AAAAAAAATAAA
113591023 GGATAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
18 11 0.73
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
ATTTAAAAAAAATAAAA
Found at i:113595577 original size:47 final size:47
Alignment explanation
Indices: 113595468--113595578 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
113595458 CCGGGATAAG
*
113595468 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
113595515 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
113595562 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
113595579 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:113596355 original size:12 final size:12
Alignment explanation
Indices: 113596320--113596359 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
113596310 ATCCTCAAAT
*
113596320 TTTCCTTTTTTA
1 TTTCCTTTTTTC
*
113596332 TTTCTTTTTTTC
1 TTTCCTTTTTTC
*
113596344 TTTCCTTCTTTC
1 TTTCCTTTTTTC
113596356 TTTC
1 TTTC
113596360 TCACGTTTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTCCTTTTTTC
Found at i:113596397 original size:4 final size:4
Alignment explanation
Indices: 113596380--113596410 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
113596370 TCTAGGTTAG
*
113596380 TCTT TCTA TCTT TCTT TCTT TCTT TCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
113596411 CACTCTGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (4 bp):
TCTT
Found at i:113596446 original size:14 final size:14
Alignment explanation
Indices: 113596427--113596457 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
113596417 GTAACTTTTC
113596427 TATTCTTTACTCAT
1 TATTCTTTACTCAT
*
113596441 TATTCTTTATTCAT
1 TATTCTTTACTCAT
113596455 TAT
1 TAT
113596458 ACTATATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTCTTTACTCAT
Found at i:113605315 original size:15 final size:16
Alignment explanation
Indices: 113605259--113605334 Score: 63
Period size: 15 Copynumber: 4.9 Consensus size: 16
113605249 TAGAATTTCA
*
113605259 AAATTAAAAAGATAC-
1 AAATTAAAAATATACT
*
113605274 AAATATTAAAAT-TGACT
1 AAAT-TAAAAATAT-ACT
*
113605291 AATTTAAAAAATATA-T
1 AAATT-AAAAATATACT
113605307 AAATTAAAAATA-ACT
1 AAATTAAAAATATACT
113605322 AAATT-AAAATATA
1 AAATTAAAAATATA
113605335 ATTATACAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
14 7 0.14
15 19 0.39
16 13 0.27
17 9 0.18
18 1 0.02
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (16 bp):
AAATTAAAAATATACT
Found at i:113621311 original size:15 final size:15
Alignment explanation
Indices: 113621291--113621321 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
113621281 TTACAGTTTT
113621291 TTCTTATTCTTCTTC
1 TTCTTATTCTTCTTC
*
113621306 TTCTTATTCTTTTTC
1 TTCTTATTCTTCTTC
113621321 T
1 T
113621322 GTTATTAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (15 bp):
TTCTTATTCTTCTTC
Found at i:113625600 original size:54 final size:54
Alignment explanation
Indices: 113625516--113625650 Score: 252
Period size: 54 Copynumber: 2.5 Consensus size: 54
113625506 CCTTACAGCG
*
113625516 GGATTACCAGTCCAGGCTAAATCCCATATAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTATAATATAAACTCATAGAGTATTGTCA
113625570 GGATTACCAGTCCAGGCTAAATCCCCTATAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTATAATATAAACTCATAGAGTATTGTCA
*
113625624 GGATTACCAATCCAGGCTAAATCCCCT
1 GGATTACCAGTCCAGGCTAAATCCCCT
113625651 GCAACGACAA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (54 bp):
GGATTACCAGTCCAGGCTAAATCCCCTATAATATAAACTCATAGAGTATTGTCA
Found at i:113628416 original size:21 final size:21
Alignment explanation
Indices: 113628359--113628420 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
113628349 GAAACAGTAT
*
113628359 ACGACACATAAAGTGCCTGAA
1 ACGACACATATAGTGCCTGAA
** *
113628380 ACGACACACGTGGTGCCT-AA
1 ACGACACATATAGTGCCTGAA
*
113628400 TATGACACATATAGTGCCTGA
1 -ACGACACATATAGTGCCTGA
113628421 TCGGCAAAGC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 28 0.90
22 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.19
Consensus pattern (21 bp):
ACGACACATATAGTGCCTGAA
Found at i:113629553 original size:23 final size:27
Alignment explanation
Indices: 113629524--113629583 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
113629514 TTATTAATTT
113629524 ATTAAT-TAATATAATAATATAATATC-A
1 ATTAATATAA-ATAATAATA-AATATCTA
113629551 ATTAAT-TAAATAATAATAAATATCTA
1 ATTAATATAAATAATAATAAATATCTA
*
113629577 TTTAATA
1 ATTAATA
113629584 CACAAATACA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 6 0.20
26 15 0.50
27 9 0.30
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (27 bp):
ATTAATATAAATAATAATAAATATCTA
Found at i:113634537 original size:23 final size:23
Alignment explanation
Indices: 113634511--113634555 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
113634501 GATCCTTGCA
* *
113634511 ATTACTTTAAAATTTTATTTGTC
1 ATTACTTGAAAATTTTAATTGTC
* *
113634534 ATTAGTTGAATATTTTAATTGT
1 ATTACTTGAAAATTTTAATTGT
113634556 AAAATATCCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (23 bp):
ATTACTTGAAAATTTTAATTGTC
Found at i:113637059 original size:2 final size:2
Alignment explanation
Indices: 113637054--113637078 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
113637044 ATTTTTTTTT
113637054 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
113637079 TGTTAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:113641843 original size:28 final size:28
Alignment explanation
Indices: 113641785--113641844 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
113641775 ATCAATTCGA
*
113641785 AAATCGATTTAGTTTGGAAAGCCATATT
1 AAATCGATTTAGTTTGGAAAGCCATACT
* **
113641813 AAATTGATTTAGTTTGGAAAGTTATACT
1 AAATCGATTTAGTTTGGAAAGCCATACT
113641841 AAAT
1 AAAT
113641845 AATAATGTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (28 bp):
AAATCGATTTAGTTTGGAAAGCCATACT
Found at i:113642075 original size:2 final size:2
Alignment explanation
Indices: 113642070--113642107 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
113642060 ACACACACAC
*
113642070 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
113642108 AAACGAGTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:113642825 original size:3 final size:3
Alignment explanation
Indices: 113642769--113642811 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
113642759 TTTGCTTCTC
113642769 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
113642812 GAAAGGTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:113644327 original size:43 final size:42
Alignment explanation
Indices: 113644304--113644613 Score: 205
Period size: 43 Copynumber: 7.2 Consensus size: 42
113644294 AACGGAAAAT
*
113644304 GCCGCTAAAAGTAGATACCTTTAGCGGCGCTTTACCATAAAC
1 GCCGCTAAAAGTAGAGACCTTTAGCGGCGCTTTACCATAAAC
* * * *
113644346 GCCGCTAATAGTATAGACCTTTAGCGGCGC-TTAGCAAACAAAC
1 GCCGCTAAAAGTAGAGACCTTTAGCGGCGCTTTA-C-CATAAAC
* * * * * ** *
113644389 GCTGCTAAAA-TCACATACCATTAGCGGCGTTTGTTTGCA-AAGC
1 GCCGCTAAAAGT-AGAGACCTTTAGCGGCG-CT-TTACCATAAAC
* * *
113644432 GCCGCTAAAAGTACAGACCTTTAGCGGAGCTTTAGCCCA-AAAA
1 GCCGCTAAAAGTAGAGACCTTTAGCGGCGCTTTA--CCATAAAC
* ** * * * *
113644475 ACCGCTAAATTTACAGACCTATAGCGGCGCTTACACCAAAAAC
1 GCCGCTAAAAGTAGAGACCTTTAGCGGCGCTT-TACCATAAAC
* * * * *
113644518 TCCGCCAAAAGTACAGACCTTTTAGCGGCGCTTTATCCACAAAT
1 GCCGCTAAAAGTAGAGACC-TTTAGCGGCGCTTTA-CCATAAAC
* * * *
113644562 GCCGCCAAAAGTAGAGTCCTTTAGCGGCGCTTTCCCCACAAAC
1 GCCGCTAAAAGTAGAGACCTTTAGCGGCGCTTT-ACCATAAAC
113644605 GCCGCTAAA
1 GCCGCTAAA
113644614 TTTACAGATT
Statistics
Matches: 209, Mismatches: 45, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
41 5 0.02
42 33 0.16
43 132 0.63
44 37 0.18
46 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (42 bp):
GCCGCTAAAAGTAGAGACCTTTAGCGGCGCTTTACCATAAAC
Found at i:113644621 original size:87 final size:86
Alignment explanation
Indices: 113644426--113644613 Score: 207
Period size: 87 Copynumber: 2.2 Consensus size: 86
113644416 CGTTTGTTTG
* **
113644426 CAAAGCGCCGCTAAAAGTACAGACCTTTAGCGGAGCTTTAGCCCAAAAAACCGCTAAATTTACAG
1 CAAA-CGCCGCTAAAAGTACAGACCTTTAGCGGAGCTTTAGCCCAAAAAACCGCCAAAAGTACAG
113644491 ACCTATAGCGGCGCTTACACCA
65 ACCTATAGCGGCGCTTACACCA
* * * * * ** *
113644513 AAAACTCCGCCAAAAGTACAGACCTTTTAGCGGCGCTTTA-TCCACAAATGCCGCCAAAAGTAGA
1 CAAACGCCGCTAAAAGTACAGACC-TTTAGCGGAGCTTTAGCCCA-AAAAACCGCCAAAAGTACA
* * * *
113644577 GTCCTTTAGCGGCGCTTTCCCCA
64 GACCTATAGCGGCGCTTACACCA
113644600 CAAACGCCGCTAAA
1 CAAACGCCGCTAAA
113644614 TTTACAGATT
Statistics
Matches: 81, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
86 21 0.26
87 60 0.74
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.19
Consensus pattern (86 bp):
CAAACGCCGCTAAAAGTACAGACCTTTAGCGGAGCTTTAGCCCAAAAAACCGCCAAAAGTACAGA
CCTATAGCGGCGCTTACACCA
Found at i:113644966 original size:21 final size:21
Alignment explanation
Indices: 113644941--113644985 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
113644931 GCTCTGCTCC
*
113644941 GCCTCTCTCGCTGCTGCCGCT
1 GCCTCCCTCGCTGCTGCCGCT
*
113644962 GCCTCCCTCGCTGCTGCTGCT
1 GCCTCCCTCGCTGCTGCCGCT
113644983 GCC
1 GCC
113644986 GCTGCCGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.49, G:0.24, T:0.27
Consensus pattern (21 bp):
GCCTCCCTCGCTGCTGCCGCT
Found at i:113646101 original size:36 final size:36
Alignment explanation
Indices: 113646049--113646124 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
113646039 AAAAATTAAA
*
113646049 CTTAAACCAAAGCATTATAGATTAATTTCACACTTT
1 CTTAAACCAAAACATTATAGATTAATTTCACACTTT
113646085 CTTAAACCAAAACATTATAGATTAATTTCACACTTT
1 CTTAAACCAAAACATTATAGATTAATTTCACACTTT
113646121 CTTA
1 CTTA
113646125 CCTTAATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (36 bp):
CTTAAACCAAAACATTATAGATTAATTTCACACTTT
Found at i:113650624 original size:9 final size:9
Alignment explanation
Indices: 113650610--113650746 Score: 103
Period size: 9 Copynumber: 14.6 Consensus size: 9
113650600 ATGTATTAGT
113650610 TAAGTTATG
1 TAAGTTATG
113650619 TAAGTTATG
1 TAAGTTATG
*
113650628 TGAGTTATG
1 TAAGTTATG
*
113650637 TAAGTTGTTATA
1 TAA---GTTATG
*
113650649 TACGTTATG
1 TAAGTTATG
* *
113650658 TGAGTTATA
1 TAAGTTATG
*
113650667 TAAATTATG
1 TAAGTTATG
113650676 TAAGTTATG
1 TAAGTTATG
113650685 TAAGTTATG
1 TAAGTTATG
*
113650694 TAGGTTGTTATG
1 TA---AGTTATG
*
113650706 TAAATTATG
1 TAAGTTATG
**
113650715 TAAGTTACA
1 TAAGTTATG
*
113650724 TGAGTTATG
1 TAAGTTATG
* *
113650733 TAACTTATT
1 TAAGTTATG
113650742 TAAGT
1 TAAGT
113650747 AATGATCAAT
Statistics
Matches: 97, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
9 82 0.85
12 15 0.15
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:113650702 original size:57 final size:57
Alignment explanation
Indices: 113650614--113650746 Score: 167
Period size: 57 Copynumber: 2.3 Consensus size: 57
113650604 ATTAGTTAAG
* ** * *
113650614 TTATGTAAGTTATGTGAGTTATGTAAGTTGTTATATACGTTATGTGAGTTATATAAA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACATAAA
* * * *
113650671 TTATGTAAGTTATGTAAGTTATGTAGGTTGTTATGTAAATTATGTAAGTTACATGAG
1 TTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACATAAA
* *
113650728 TTATGTAACTTATTTAAGT
1 TTATGTAAGTTATGTAAGT
113650747 AATGATCAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (57 bp):
TTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACATAAA
Found at i:113652705 original size:25 final size:26
Alignment explanation
Indices: 113652650--113652705 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
113652640 TTATAATTAA
* * *
113652650 ATTAATATAATATATAAAAATTTAGG
1 ATTAATATAAGATAAAAAAATTTACG
*
113652676 A-TAATATTAGATAAAAAAATTT-CG
1 ATTAATATAAGATAAAAAAATTTACG
113652700 ATTAAT
1 ATTAAT
113652706 TAAAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 2 0.08
25 22 0.88
26 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (26 bp):
ATTAATATAAGATAAAAAAATTTACG
Found at i:113654118 original size:7 final size:7
Alignment explanation
Indices: 113654106--113654154 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
113654096 ACAAAATTAG
113654106 ACCCTAA
1 ACCCTAA
113654113 ACCCTAA
1 ACCCTAA
* *
113654120 ATCTTAA
1 ACCCTAA
113654127 ACCCTAA
1 ACCCTAA
*
113654134 ACTCTAA
1 ACCCTAA
*
113654141 ACCATAA
1 ACCCTAA
113654148 ACCCTAA
1 ACCCTAA
113654155 CCTTATAAAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:113654130 original size:21 final size:21
Alignment explanation
Indices: 113654098--113654177 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
113654088 CGTTCTCCAC
*
113654098 AAAA-TTAGACCCTAAACCCT
1 AAAACTTAAACCCTAAACCCT
* *
113654118 AAATCTTAAACCCTAAACTCT
1 AAAACTTAAACCCTAAACCCT
* * *
113654139 AAACCATAAACCCT-AACCTT
1 AAAACTTAAACCCTAAACCCT
113654159 ATAAACATTAAACCCTAAA
1 A-AAAC-TTAAACCCTAAA
113654178 TTCTAGATAC
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 8 0.17
21 29 0.62
22 8 0.17
23 2 0.04
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (21 bp):
AAAACTTAAACCCTAAACCCT
Found at i:113654552 original size:14 final size:14
Alignment explanation
Indices: 113654535--113654578 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
113654525 TTAACTTATC
*
113654535 CCCTATCCCTTAAA
1 CCCTAACCCTTAAA
113654549 CCCTAACCCTT-AA
1 CCCTAACCCTTAAA
113654562 CCACTAACCCTTAAA
1 CC-CTAACCCTTAAA
113654577 CC
1 CC
113654579 TTAATACTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 4 0.15
14 19 0.70
15 4 0.15
ACGTcount: A:0.32, C:0.45, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAACCCTTAAA
Found at i:113654700 original size:23 final size:22
Alignment explanation
Indices: 113654655--113654701 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 22
113654645 AAATAGTAGT
113654655 AAACCCTAAAAACCAAACATAAC
1 AAACCCT-AAAACCAAACATAAC
113654678 AAACCCT-AAACCATAACATTAAC
1 AAACCCTAAAACCA-AACA-TAAC
113654701 A
1 A
113654702 TACTAAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.27
22 4 0.18
23 12 0.55
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (22 bp):
AAACCCTAAAACCAAACATAAC
Found at i:113655555 original size:41 final size:41
Alignment explanation
Indices: 113655488--113655929 Score: 499
Period size: 41 Copynumber: 10.8 Consensus size: 41
113655478 AATTCAAAAA
* * * *
113655488 AGACGTTTAGCGGCGTTTCTCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* * *
113655529 AGACTTTTTGCGGCGTTTTTCTAAAAACACCGCTAATACTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* * * *
113655570 AGACTTTTGACGGCGTTTTCCCAAAAACGCCGCTAATACTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* * * *
113655611 AGACTTTTTGCGGCGTTTTCCCAAAAACGCCGCTAATACTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* * *
113655652 AGACCTTTGGCGGCGTTTTTATAAAAACGCCGTTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* ** *
113655693 AGACCTTTGGCGGCGTTTTGGTAAAAAACGCCGCTAACGCTC
1 AGACTTTTGGCGGCGTTTTTCT-AAAAACGCCGCTAATGCTC
*
113655735 AGACCTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* *
113655776 AGACTTTTGGCGGCGTTTTTATAAAAACTCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* * * ** * * *
113655817 AGACCTTTGGCGACATTTTTGGAAAAATGCCGCGAATTCTC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
* * *
113655858 AGACTTTTTGCGGCGTTTCTT-GAAAAACGCCGCTAATTCTC
1 AGACTTTTGGCGGCGTTT-TTCTAAAAACGCCGCTAATGCTC
* * **
113655899 GGACTTTTGGAGGCGTTTTTCCGAAAACGCC
1 AGACTTTTGGCGGCGTTTTTCTAAAAACGCC
113655930 ACTATTTCTC
Statistics
Matches: 348, Mismatches: 50, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
40 2 0.01
41 307 0.88
42 39 0.11
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (41 bp):
AGACTTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTC
Found at i:113655873 original size:206 final size:206
Alignment explanation
Indices: 113655510--113655917 Score: 539
Period size: 206 Copynumber: 2.0 Consensus size: 206
113655500 GCGTTTCTCC
* * *
113655510 AAAAACGCCGCTAATGCTCAGACTTTTTGCGGCGTTTTTCTAAAAACACCGCTAATACTCAGACT
1 AAAAACGCCGCTAACGCTCAGACCTTTGGCGGCGTTTTTCTAAAAACACCGCTAATACTCAGACT
* * * * *
113655575 TTTGACGGCGTTTTCCCAAAAACGCCGCTAATACTCAGACTTTTTGCGGCGTTTTCCCAAAAACG
66 TTTGACGGCGTTTTCACAAAAACGCCGCTAATACTCAGACCTTTGGCGACATTTTCCCAAAAACG
* * * *
113655640 CCGCTAATACTCAGACCTTTGGCGGCGTTT-TTATAAAAACGCCGTTAATGCTCAGACCTTTGGC
131 CCGCGAATACTCAGACCTTTGGCGGCGTTTCTT-GAAAAACGCCGCTAATGCTCAGACCTTTGGA
113655704 GGCGTTTTGGTA
195 GGCGTTTTGGTA
* *
113655716 AAAAACGCCGCTAACGCTCAGACCTTTGGCGGCGTTTTTCTAAAAACGCCGCTAATGCTCAGACT
1 AAAAACGCCGCTAACGCTCAGACCTTTGGCGGCGTTTTTCTAAAAACACCGCTAATACTCAGACT
* * * * * *** *
113655781 TTTGGCGGCGTTTTTATAAAAACTCCGCTAATGCTCAGACCTTTGGCGACATTTTTGGAAAAATG
66 TTTGACGGCGTTTTCACAAAAACGCCGCTAATACTCAGACCTTTGGCGACATTTTCCCAAAAACG
* * * * * *
113655846 CCGCGAATTCTCAGACTTTTTGCGGCGTTTCTTGAAAAACGCCGCTAATTCTCGGACTTTTGGAG
131 CCGCGAATACTCAGACCTTTGGCGGCGTTTCTTGAAAAACGCCGCTAATGCTCAGACCTTTGGAG
113655911 GCGTTTT
196 GCGTTTT
113655918 TCCGAAAACG
Statistics
Matches: 172, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
206 170 0.99
207 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (206 bp):
AAAAACGCCGCTAACGCTCAGACCTTTGGCGGCGTTTTTCTAAAAACACCGCTAATACTCAGACT
TTTGACGGCGTTTTCACAAAAACGCCGCTAATACTCAGACCTTTGGCGACATTTTCCCAAAAACG
CCGCGAATACTCAGACCTTTGGCGGCGTTTCTTGAAAAACGCCGCTAATGCTCAGACCTTTGGAG
GCGTTTTGGTA
Found at i:113655955 original size:40 final size:41
Alignment explanation
Indices: 113655881--113655957 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
113655871 CGTTTCTTGA
* * *
113655881 AAAACGCCGCTAATTCTCGGACTTTTGGAGGCGTTTTTCCG
1 AAAACGCCACTAATTCTCGGACTTATAGAGGCGTTTTTCCG
* *
113655922 AAAACGCCACTATTTCTC-GACTTATAGTGGCGTTTT
1 AAAACGCCACTAATTCTCGGACTTATAGAGGCGTTTT
113655958 GGTTCAAACG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 15 0.48
41 16 0.52
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (41 bp):
AAAACGCCACTAATTCTCGGACTTATAGAGGCGTTTTTCCG
Found at i:113661437 original size:22 final size:22
Alignment explanation
Indices: 113661412--113661454 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
113661402 ATTGTTTGGA
* *
113661412 TATTGTATTACTCTTATTTTAT
1 TATTATATTACTATTATTTTAT
*
113661434 TATTATTTTACTATTATTTTA
1 TATTATATTACTATTATTTTA
113661455 AAGGTATTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTATATTACTATTATTTTAT
Found at i:113661441 original size:11 final size:11
Alignment explanation
Indices: 113661419--113661454 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
113661409 GGATATTGTA
*
113661419 TTACTCTTATT
1 TTACTATTATT
*
113661430 TTATTATTATT
1 TTACTATTATT
113661441 TTACTATTATT
1 TTACTATTATT
113661452 TTA
1 TTA
113661455 AAGGTATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (11 bp):
TTACTATTATT
Found at i:113663426 original size:16 final size:15
Alignment explanation
Indices: 113663400--113663434 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
113663390 TGATGTCAAT
113663400 AATATAAAATATTAA
1 AATATAAAATATTAA
*
113663415 AATATAAAAATATTAG
1 AATAT-AAAATATTAA
113663431 AATA
1 AATA
113663435 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:113663604 original size:20 final size:20
Alignment explanation
Indices: 113663547--113663653 Score: 63
Period size: 22 Copynumber: 5.0 Consensus size: 20
113663537 AATACTACAT
113663547 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
113663566 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
113663589 AAATATGTACATAATATAGTGTAA
1 AAATATGTACATAATATA----AA
**
113663613 AAATACATACATAATATAATTA
1 AAATATGTACATAATATAA--A
* *
113663635 AAATATATACATAAGATAA
1 AAATATGTACATAATATAA
113663654 CATGTAAAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
19 8 0.12
20 8 0.12
22 20 0.29
23 14 0.21
24 18 0.26
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.31
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:113663613 original size:24 final size:23
Alignment explanation
Indices: 113663584--113663776 Score: 101
Period size: 24 Copynumber: 8.1 Consensus size: 23
113663574 ACGTGATAAT
*
113663584 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
113663607 GTGTAAAAATACATACATAATATA
1 AT-TAAAAATATATACATAATATA
*
113663631 ATT-AAAATATATACATAAGATAA
1 ATTAAAAATATATACATAATAT-A
*
113663654 CATGTAAAATATATATATAAATAATATA
1 -AT-T-AAA-A-ATATATACATAATATA
* *
113663682 GTATTAAATATATATACATAAAAT-
1 --ATTAAAAATATATACATAATATA
* * *
113663706 AGT-ATAATATATACGTAATATAGA
1 ATTAAAAATATATACATAATAT--A
* * *
113663730 ATT-TAGA-ATATACCTAATAT-
1 ATTAAAAATATATACATAATATA
*
113663750 ATTAAAAGAATATATATATAATATA
1 ATT-AAA-AATATATACATAATATA
113663775 AT
1 AT
113663777 ATTAAGAAAT
Statistics
Matches: 127, Mismatches: 26, Indels: 32
0.69 0.14 0.17
Matches are distributed among these distances:
20 3 0.02
21 14 0.11
22 19 0.15
23 16 0.13
24 36 0.28
25 16 0.13
27 5 0.04
28 3 0.02
29 15 0.12
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.35
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:113663667 original size:27 final size:28
Alignment explanation
Indices: 113663615--113663703 Score: 82
Period size: 27 Copynumber: 3.3 Consensus size: 28
113663605 TAGTGTAAAA
* * *
113663615 ATACATACATAATATAAT-TAAA-ATAT
1 ATACATAAATAACATAGTATAAATATAT
113663641 ATACATAAGATAACAT-GTA-AAATATAT
1 ATACATAA-ATAACATAGTATAAATATAT
*
113663668 AT--ATAAATAATATAGTATTAAATATAT
1 ATACATAAATAACATAGTA-TAAATATAT
113663695 ATACATAAA
1 ATACATAAA
113663704 ATAGTATAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
24 6 0.12
25 7 0.14
26 11 0.22
27 22 0.43
29 5 0.10
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (28 bp):
ATACATAAATAACATAGTATAAATATAT
Found at i:113663677 original size:29 final size:29
Alignment explanation
Indices: 113663637--113663703 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
113663627 TATAATTAAA
*
113663637 ATATATACATAAGATAACATGTAAA-ATAT
1 ATATATAAATAAGATAACAT-TAAATATAT
* **
113663666 ATATATAAATAATATAGTATTAAATATAT
1 ATATATAAATAAGATAACATTAAATATAT
*
113663695 ATACATAAA
1 ATATATAAA
113663704 ATAGTATAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAATATAT
Found at i:113664317 original size:30 final size:30
Alignment explanation
Indices: 113664276--113664374 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
113664266 TAGGTACAAG
113664276 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
113664306 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
113664336 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
113664366 TGGTGGTGG
1 TGGTGGTGG
113664375 CAAAGGCTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.17, C:0.06, G:0.51, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:113664583 original size:45 final size:45
Alignment explanation
Indices: 113664529--113664618 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
113664519 GTAGGTTAGG
113664529 TAAGGCTAAATTGGGTTTTGATGTAAATGGGTTAAAATTGGCCTA
1 TAAGGCTAAATTGGGTTTTGATGTAAATGGGTTAAAATTGGCCTA
113664574 TAAGGCTAAATTGGGTTTTGATGTAAATGGGTTAAAATTGGCCTA
1 TAAGGCTAAATTGGGTTTTGATGTAAATGGGTTAAAATTGGCCTA
113664619 CAACAGCTGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (45 bp):
TAAGGCTAAATTGGGTTTTGATGTAAATGGGTTAAAATTGGCCTA
Found at i:113664937 original size:15 final size:15
Alignment explanation
Indices: 113664909--113664942 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
113664899 GTTGATTCTT
*
113664909 AAAAAGCATAAATTG
1 AAAAAACATAAATTG
*
113664924 AAAAAACATTAATTG
1 AAAAAACATAAATTG
113664939 AAAA
1 AAAA
113664943 TAGCTCAGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.65, C:0.06, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAAACATAAATTG
Found at i:113664984 original size:88 final size:85
Alignment explanation
Indices: 113664769--113665017 Score: 259
Period size: 88 Copynumber: 2.8 Consensus size: 85
113664759 CATCTTGTAG
* * *
113664769 CTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACA-AAATT
1 CTCAG-ACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAACATAAA-T
* *
113664833 TGTAAAACAGATTTTGAAAATAC
64 TG-AAAAAACATTTTGAAAATAC
* * * * *
113664856 CTCGGTATGTGACCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTCTTAAAAAGCATAAA
1 CTCAG-ACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT-TTAAAAA-CATAAA
*
113664921 TTGAAAAAACATTAATTGAAAATAG
63 TTGAAAAAACATT--TTGAAAATAC
* *
113664946 CTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAA
1 CTCAGACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA---TTTT-AAAAACATAA
113665010 ATTGAAAA
62 ATTGAAAA
113665018 CACCTCAGCG
Statistics
Matches: 134, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
87 42 0.31
88 49 0.37
89 5 0.04
90 31 0.23
91 7 0.05
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (85 bp):
CTCAGACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAACATAAATTG
AAAAAACATTTTGAAAATAC
Found at i:113665019 original size:88 final size:85
Alignment explanation
Indices: 113664769--113665017 Score: 261
Period size: 87 Copynumber: 2.8 Consensus size: 85
113664759 CATCTTGTAG
* *
113664769 CTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-AAAACA-AAAT
1 CTCAG-ACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACATAAA-
*
113664832 TTGTAAAACAGATTTTGAAAATAC
64 TTG-AAAA-ACATTTTGAAAATAC
* * * * * *
113664856 CTCGGTATGTGACCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTCTTAAAAAGCATAAA
1 CTCAG-ACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAA-CATAAA
*
113664921 TTGAAAAAACATTAATTGAAAATAG
64 TTG-AAAAACATT--TTGAAAATAC
* *
113664946 CTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAA
1 CTCAGACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAAACATAA
113665010 ATTGAAAA
63 ATTGAAAA
113665018 CACCTCAGCG
Statistics
Matches: 134, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
87 44 0.33
88 43 0.32
89 13 0.10
90 29 0.22
91 5 0.04
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (85 bp):
CTCAGACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACATAAATT
GAAAAACATTTTGAAAATAC
Found at i:113665058 original size:77 final size:76
Alignment explanation
Indices: 113664925--113665551 Score: 644
Period size: 77 Copynumber: 8.2 Consensus size: 76
113664915 CATAAATTGA
** * * * *
113664925 AAAAACATTAATTGAAAATAGCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
113664988 TTGATTTTTTTG
66 TTGA-TTTTTTG
* *
113665000 AAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
113665065 TTGATTTTTTG
66 TTGATTTTTTG
** * *
113665076 ATGAACAGAAATT-AAAACTACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAACATGA
1 AAAAACAGAAATTGAAAAC-ACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
113665138 GTTGATTTTTTTG
65 GTTGA-TTTTTTG
* *
113665151 AAAAATAGAAGTTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
113665216 TTGATTTTTTTG
66 TTGA-TTTTTTG
* * * * *
113665228 ACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCC-AAGGCTCAACTCACCTCTTGCAATATG
1 AAAAACAGAAATTG-AAAACACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATG
113665292 AGTTGATTTTTTG
64 AGTTGATTTTTTG
* *
113665305 AAAAACAGAAATTGAAAACACCTCAGC--ATG---TGAGGCTCAACTCGCCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
113665365 TTGA-TTTTTG
66 TTGATTTTTTG
* * * * *
113665375 AAAAACATAAATTGAGCAGAAATTGAAAATACCTCAACG-G-GTCTTGAAGCTCAACTCACCTCT
1 ------A-AAA---A-CAGAAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCT
113665438 CGCAATATGAGTTGATTTTTTG
55 CGCAATATGAGTTGATTTTTTG
** * * * * *
113665460 ---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
113665520 TTGATTTTTTG
66 TTGATTTTTTG
113665531 AATTAAAACAGAAATTGAAAA
1 -A--AAAACAGAAATTGAAAA
113665552 TAGAAATGGA
Statistics
Matches: 473, Mismatches: 45, Indels: 66
0.81 0.08 0.11
Matches are distributed among these distances:
70 7 0.01
71 90 0.19
74 35 0.07
75 57 0.12
76 46 0.10
77 128 0.27
78 48 0.10
79 2 0.00
80 1 0.00
81 21 0.04
84 32 0.07
85 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (76 bp):
AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTG
Found at i:113665149 original size:151 final size:150
Alignment explanation
Indices: 113664934--113665553 Score: 706
Period size: 151 Copynumber: 4.1 Consensus size: 150
113664924 AAAAAACATT
* * * *
113664934 AATTGAAAATAGCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* * *
113664999 GAAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
65 GAAAAACAGAAATTGAAAACACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
113665064 GTTGATTTTTTGATGAACAGA
130 GTTGATTTTTTGATGAACAGA
*
113665085 AATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTT
1 AATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * *
113665149 TGAAAAATAGAAGTTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
64 TGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
**
113665214 AGTTGATTTTTTTGACAAACAGA
129 AGTTGA-TTTTTTGATGAACAGA
* * *
113665237 AATTGAAAAATACCTCAGCGTGTAAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
1 AATTG-AAAATACCTCAACGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
113665301 TTTGAAAAACAGAAATTGAAAACACCTCAGCA--TG---TGAGGCTCAACTCGCCTCTCGCAATA
62 TTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* *
113665361 TGAGTTGATTTTTGAAAAACATAAATTGAGCAGA
127 TGAGTTGATTTTT--------T-GA-TGAACAGA
* * *
113665395 AATTGAAAATACCTCAACGGGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
** * * * *
113665460 ---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAG
66 AAAAACAGAAATTGAAAACACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
113665520 TTGATTTTTTGAATTAAAACAGA
131 TTGATTTTTTG-A-T-GAACAGA
113665543 AATTGAAAATA
1 AATTGAAAATA
113665554 GAAATGGAAA
Statistics
Matches: 406, Mismatches: 38, Indels: 53
0.82 0.08 0.11
Matches are distributed among these distances:
147 4 0.01
148 21 0.05
149 33 0.08
150 5 0.01
151 121 0.30
152 40 0.10
153 12 0.03
154 37 0.09
155 104 0.26
156 3 0.01
157 16 0.04
158 10 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (150 bp):
AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAACAGAAATTGAAAACACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGATGAACAGA
Found at i:113665428 original size:155 final size:154
Alignment explanation
Indices: 113664870--113665637 Score: 584
Period size: 151 Copynumber: 4.9 Consensus size: 154
113664860 GTATGTGACC
** * * **
113664870 TGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTCTT-AAAAAGCATAAATTGAAAAAACATT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CA-AAATTG-----ACAGA
* * * ** *
113664934 AATTGAAAATAGCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
59 AATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
113664999 GAAAAACATAAATTGAAAACACCTCAGCGTG
124 GAAAAACAGAAATTGAAAACACCTCAGCATG
113665030 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG---------A-TGAACAGA
1 T-----GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAATTG-ACAGA
* * *
113665085 AATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTT
59 AATTGAAAA-TACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
113665149 TGAAAAATAGAAGTTGAAAACACCTCAGCGTGTG
123 TGAAAAACAGAAATTGAAAACACCTCAGC--ATG
***
113665183 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--TTGAC--AA---ACAGAAATT
1 ---TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTGACAGAAATT
* ** *
113665241 GAAAAATACCTCAGCGTGT-AAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTT
63 G-AAAATACCTCAACGTGTCTTG--AA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
113665304 GAAAAACAGAAATTGAAAACACCTCAGCATG
124 GAAAAACAGAAATTGAAAACACCTCAGCATG
*
113665335 TGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATTG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGA-CAGAAATTG
*
113665400 AAAATACCTCAACGGGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG---A
64 AAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
** * * *
113665461 TGATAAATTGAAAATACCTCAATGTGACT-
129 ACAGAAATTGAAAACACCTC-A-G-CA-TG
* *
113665490 TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATAG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-A--AAAACA-AAATTG---ACAG
* * * * * * *
113665555 AAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTTTCGCAATATGAGCTGATTTTTT
58 AAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
113665618 TGAAACACATAAATTAAAAA
123 TGAAAAACAGAAATTGAAAA
113665638 AAAAAGAAAT
Statistics
Matches: 507, Mismatches: 52, Indels: 95
0.78 0.08 0.15
Matches are distributed among these distances:
149 38 0.07
150 9 0.02
151 119 0.23
152 29 0.06
153 16 0.03
154 40 0.08
155 100 0.20
156 11 0.02
157 17 0.03
158 10 0.02
159 47 0.09
160 9 0.02
161 16 0.03
162 1 0.00
163 11 0.02
165 30 0.06
166 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (154 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTGACAGAAATTGAA
AATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAC
AGAAATTGAAAACACCTCAGCATG
Found at i:113665510 original size:71 final size:71
Alignment explanation
Indices: 113665394--113665531 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 71
113665384 AATTGAGCAG
*
113665394 AAATTGAAAATACCTCAACGGGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
113665459 GATGAT
66 GATGAT
* * * *
113665465 AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
113665530 GA
66 GA
113665532 ATTAAAACAG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGGGACTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GATGAT
Found at i:113666120 original size:73 final size:73
Alignment explanation
Indices: 113666034--113666288 Score: 206
Period size: 73 Copynumber: 3.3 Consensus size: 73
113666024 AAGGCAAAAA
113666034 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
113666099 GTTGATTT
66 GTTGATTT
* * * *** * * * * *
113666107 TTGAAAAAAAGAAATTGAAAA-ACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCA
1 TTGAAAAACAGAAATTGAAAATAC-----CTCAGCGTGCC-CTGAG-G-CTC-A---AC---TCA
113666171 CCTCTCGCAATATGAGTTGATTT
51 CCTCTCGCAATATGAGTTGATTT
* * * *
113666194 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
113666259 GTTGATTTT
66 GTTGA-TTT
* *
113666268 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
113666289 AACAAAAATT
Statistics
Matches: 138, Mismatches: 27, Indels: 33
0.70 0.14 0.17
Matches are distributed among these distances:
72 2 0.01
73 43 0.31
74 23 0.17
76 1 0.01
77 5 0.04
78 3 0.02
79 2 0.01
80 4 0.03
81 2 0.01
82 3 0.02
83 4 0.03
84 1 0.01
87 43 0.31
88 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:113666140 original size:13 final size:14
Alignment explanation
Indices: 113666107--113666141 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
113666097 GAGTTGATTT
113666107 TTGAAAAAAAGAAA
1 TTGAAAAAAAGAAA
*
113666121 TTGAAAAACAGAAA
1 TTGAAAAAAAGAAA
113666135 TT-AAAAA
1 TTGAAAAA
113666142 TACCTCGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.69, C:0.03, G:0.11, T:0.17
Consensus pattern (14 bp):
TTGAAAAAAAGAAA
Found at i:113666186 original size:186 final size:186
Alignment explanation
Indices: 113665849--113666203 Score: 509
Period size: 186 Copynumber: 1.9 Consensus size: 186
113665839 GAGTTGATTT
* * * *
113665849 TTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGT
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*** * * * * *
113665914 TGATTTTTTTGAAACATAAATTAAATAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
66 TGATTTTTGAAAAAAAGAAATTAAATAAACGAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTC
113665979 AACTCACCTCTCGCAATATGAGTTGA-TTTGAAAAGCAGAATTTGTAAGGCAAAAA
131 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAGCAGAATTTGTAAGGCAAAAA
*
113666034 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGT--CCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
113666099 GTTGATTTTTGAAAAAAAGAAATTGAA-AAAC-AGAAATTAAAAATACCTCGGCGTGCCCCGAGG
64 GTTGATTTTTGAAAAAAAGAAATTAAATAAACGA-AAATTAAAAATACCTCAGCGTGCCCCGAGG
*
113666162 CTCAGCTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCA
128 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAGCA
113666204 TAAATTGAAA
Statistics
Matches: 149, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
185 30 0.20
186 58 0.39
187 50 0.34
188 11 0.07
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (186 bp):
TTGAAAAACAAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAAAAAGAAATTAAATAAACGAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAGCAGAATTTGTAAGGCAAAAA
Found at i:113666213 original size:87 final size:87
Alignment explanation
Indices: 113666031--113666200 Score: 304
Period size: 87 Copynumber: 2.0 Consensus size: 87
113666021 TGTAAGGCAA
* *
113666031 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
113666096 TGAGTTGATTTTTGAAAAAAAG
66 TGAGTTGATTTTTGAAAAAAAG
* *
113666118 AAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
113666183 TGAGTTGATTTTTGAAAA
66 TGAGTTGATTTTTGAAAA
113666201 GCATAAATTG
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (87 bp):
AAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAAAAG
Found at i:113666388 original size:91 final size:89
Alignment explanation
Indices: 113666205--113666374 Score: 261
Period size: 91 Copynumber: 1.9 Consensus size: 89
113666195 TGAAAAGCAT
* * *
113666205 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
113666270 GAAAAGCATAAATTGAAAAAACAA
66 GAAAAGCAGAAATTGAAAAAACAA
113666294 AAATTGAAAATACCTCAGCATGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGC--GTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTT
113666359 TTTG-AAAGACAGAAAT
63 TTTGAAAAG-CAGAAAT
113666375 AAAAACATCA
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
89 18 0.25
91 42 0.58
92 13 0.18
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCAGAAATTGAAAAAACAA
Found at i:113667252 original size:12 final size:12
Alignment explanation
Indices: 113667235--113667267 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
113667225 CCCTCTCTCT
113667235 TTTTCTTTTTTC
1 TTTTCTTTTTTC
*
113667247 TTTTCTTTTCTC
1 TTTTCTTTTTTC
113667259 TTTT-TTTTT
1 TTTTCTTTTT
113667268 AAGATGCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:113667257 original size:17 final size:17
Alignment explanation
Indices: 113667235--113667267 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
113667225 CCCTCTCTCT
113667235 TTTTCT-TTTTTCTTTTC
1 TTTTCTCTTTTT-TTTTC
113667252 TTTTCTCTTTTTTTTT
1 TTTTCTCTTTTTTTTT
113667268 AAGATGCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTCTCTTTTTTTTTC
Found at i:113668201 original size:8 final size:8
Alignment explanation
Indices: 113668188--113668212 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
113668178 GTCATGACAT
113668188 GAAGGGGC
1 GAAGGGGC
113668196 GAAGGGGC
1 GAAGGGGC
113668204 GAAGGGGC
1 GAAGGGGC
113668212 G
1 G
113668213 CATGAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.64, T:0.00
Consensus pattern (8 bp):
GAAGGGGC
Found at i:113673330 original size:8 final size:8
Alignment explanation
Indices: 113673313--113673355 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
113673303 TGATGTGAAT
113673313 AATA-TAA
1 AATATTAA
113673320 AATATTAA
1 AATATTAA
113673328 AATATTAA
1 AATATTAA
*
113673336 AATATCAA
1 AATATTAA
*
113673344 AATATTAG
1 AATATTAA
113673352 AATA
1 AATA
113673356 ATAATAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
7 4 0.12
8 28 0.88
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (8 bp):
AATATTAA
Found at i:113673625 original size:25 final size:25
Alignment explanation
Indices: 113673506--113673718 Score: 126
Period size: 23 Copynumber: 8.9 Consensus size: 25
113673496 TATGTGATAA
* *
113673506 TATTAAAAATATGTACATAATATAG
1 TATTAAAGATATATACATAATATAG
* * * *
113673531 TGTAAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAATATAG
* *
113673555 -ATTAAA-ATATATACATAAGATAA
1 TATTAAAGATATATACATAATATAG
* * *
113673578 CATGTAAATATATATATAAATAATATAG
1 TAT-T-AA-AGATATATACATAATATAG
*
113673606 TATTAAAGATATATACATAAAATAG
1 TATTAAAGATATATACATAATATAG
* *
113673631 TA-T-AATATATATACGTAATATAG
1 TATTAAAGATATATACATAATATAG
* * *
113673654 AATT-TAGA-ATATACCTAATATA-
1 TATTAAAGATATATACATAATATAG
* * *
113673676 T-TAAAAGA-ATATATATAATATAA
1 TATTAAAGATATATACATAATATAG
*
113673699 TATT-AAGAAATATA-ATAATA
1 TATTAAAGATATATACATAATA
113673719 ACAAAAAAAG
Statistics
Matches: 149, Mismatches: 28, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
21 1 0.01
22 29 0.19
23 46 0.31
24 12 0.08
25 39 0.26
26 4 0.03
27 2 0.01
28 16 0.11
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
TATTAAAGATATATACATAATATAG
Found at i:113673716 original size:23 final size:25
Alignment explanation
Indices: 113673673--113673718 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
113673663 TATACCTAAT
113673673 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
113673698 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
113673719 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:113674225 original size:18 final size:18
Alignment explanation
Indices: 113674202--113674255 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
113674192 ACAAGTGGTG
113674202 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
113674220 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
113674232 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
113674250 GTGGAG
1 GTGGAG
113674256 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:113674238 original size:30 final size:30
Alignment explanation
Indices: 113674202--113674265 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
113674192 ACAAGTGGTG
113674202 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
* *
113674232 GTGGAGCAAGTGTGGCTAGTGGAGTTGGTG
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
113674262 GTGG
1 GTGG
113674266 CAAATGCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.25
Consensus pattern (30 bp):
GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
Found at i:113675380 original size:16 final size:15
Alignment explanation
Indices: 113675361--113675403 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
113675351 TAAAAAAATT
113675361 ATATATAAAATTTTGA
1 ATATATAAAATTTT-A
113675377 ATATA-AAAATTATTA
1 ATATATAAAATT-TTA
113675392 AT-TATAAAATTT
1 ATATATAAAATTT
113675404 ATATCCGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.12
15 15 0.60
16 7 0.28
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATATAAAATTTTA
Found at i:113675405 original size:16 final size:15
Alignment explanation
Indices: 113675363--113675405 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
113675353 AAAAAATTAT
113675363 ATATAAAATTT-TGA
1 ATATAAAATTTATGA
* *
113675377 ATATAAAAATTATTA
1 ATATAAAATTTATGA
113675392 ATTATAAAATTTAT
1 A-TATAAAATTTAT
113675406 ATCCGATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 10 0.42
15 3 0.12
16 11 0.46
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATAAAATTTATGA
Found at i:113676274 original size:27 final size:29
Alignment explanation
Indices: 113676243--113676312 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 29
113676233 TATTAATATA
*
113676243 AATTTAAATATTATAA-TTTGAATA-TTC
1 AATTTAAATATTATAATTTTCAATACTTC
* * *
113676270 AATTTAAAAATAAAAATTTTCAATACTTC
1 AATTTAAATATTATAATTTTCAATACTTC
*
113676299 AATTAAAATATTAT
1 AATTTAAATATTAT
113676313 TTTATAATTG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
27 13 0.39
28 7 0.21
29 13 0.39
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (29 bp):
AATTTAAATATTATAATTTTCAATACTTC
Found at i:113678370 original size:15 final size:13
Alignment explanation
Indices: 113678336--113678365 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
113678326 TTAAAAATAC
113678336 TAATTTTAATAAA
1 TAATTTTAATAAA
113678349 TAATTTTAATAAA
1 TAATTTTAATAAA
113678362 -AATT
1 TAATT
113678366 ATTTTTGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAATTTTAATAAA
Found at i:113682918 original size:28 final size:27
Alignment explanation
Indices: 113682887--113682939 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
113682877 TCTTTTTTTT
113682887 TTCTCC-TTTATTTTCCATTCTCTTCTGC
1 TTCTCCATTTATTTTCC-TTC-CTTCTGC
*
113682915 TTCTCCATTTGTTTTCCTTCCTTCT
1 TTCTCCATTTATTTTCCTTCCTTCT
113682940 CCATATCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.22
28 9 0.39
29 9 0.39
ACGTcount: A:0.06, C:0.32, G:0.04, T:0.58
Consensus pattern (27 bp):
TTCTCCATTTATTTTCCTTCCTTCTGC
Found at i:113689725 original size:24 final size:25
Alignment explanation
Indices: 113689679--113689725 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
113689669 AACAAACTGG
* * *
113689679 TTCTTCTGTTAAAAATTTTATCAAT
1 TTCTACTGTTAAAAATCTGATCAAT
113689704 TTCTACTGTTAAAAA-CTGATCA
1 TTCTACTGTTAAAAATCTGATCA
113689726 CTATACATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 5 0.26
25 14 0.74
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (25 bp):
TTCTACTGTTAAAAATCTGATCAAT
Found at i:113694603 original size:61 final size:62
Alignment explanation
Indices: 113694508--113694632 Score: 173
Period size: 61 Copynumber: 2.0 Consensus size: 62
113694498 CTCAATTTTC
* * *
113694508 AATTCATTTACTTAATTTTAAAAGCAGTCCTACTAACCA-TTTTTTATTACAA-ACATAACGG
1 AATTCATTTACTTAATTTTAAAAGAAATCCTACTAAACATTTTTTTATTA-AAGACATAACGG
* * *
113694569 AATTCATTTACTTAATTTTAAAATAAATCCTACTAAATATTTTTTTATTAAAGACATAAGGG
1 AATTCATTTACTTAATTTTAAAAGAAATCCTACTAAACATTTTTTTATTAAAGACATAACGG
113694631 AA
1 AA
113694633 AAATAACTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
61 36 0.64
62 20 0.36
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (62 bp):
AATTCATTTACTTAATTTTAAAAGAAATCCTACTAAACATTTTTTTATTAAAGACATAACGG
Found at i:113697008 original size:3 final size:3
Alignment explanation
Indices: 113697000--113697032 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
113696990 TACTCTTCTA
113697000 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
113697033 CTTTCTCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:113704487 original size:5 final size:5
Alignment explanation
Indices: 113704477--113704517 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
113704467 TTAAAAATAT
113704477 TTATA TTATA TTATA TTATA TTAATA TTAATA TTAATA TTA
1 TTATA TTATA TTATA TTATA TT-ATA TT-ATA TT-ATA TTA
113704518 ATAATTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 18 0.51
6 17 0.49
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
TTATA
Found at i:113704505 original size:6 final size:6
Alignment explanation
Indices: 113704472--113704520 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
113704462 ATTTTTTAAA
*
113704472 AATATT TATATT -ATATT -ATATT -ATATT AATATT AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
113704517 AATA
1 AATA
113704521 ATTTTTATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
5 15 0.37
6 26 0.63
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
AATATT
Found at i:113705291 original size:127 final size:127
Alignment explanation
Indices: 113705155--113705713 Score: 467
Period size: 131 Copynumber: 4.4 Consensus size: 127
113705145 AAAAAATCGA
* * *
113705155 AACCCAGCACGGTAGGACACGATTCCTCGAATTTCCAAACTTTGAACATTGTCTTATTTTAGAAT
1 AACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGTCTTATTTTAGAAT
* *
113705220 TTAGAAAACGTGAGTGAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATTGC
66 TTAGAAAACGTGAGTGAAATTCTAAAGGGATACTCGATTATTTTGAACAAACGAGAAATTGC
** ** ** ** * * * **
113705282 AACCCAGCACGATAGGATACGA-TCCT-TTATACCCCGAAAACAACGATAAATT-T-TGACTTCC
1 AACCCAGCACGATAGGGCACGATTCCTCGAAT-TTCC--AAACATTGA-ACATTGTCTTATTTTA
* * * * * * ** * * * *
113705343 GAAAGTTTAG-ACA-TTGA---AAATTAC-AAAAGGATGCCCAATTATTAAG-TCCAACAAAAAA
62 G-AA-TTTAGAAAACGTGAGTGAAATT-CTAAAGGGATACTCGATTATTTTGAACAAACGAGAAA
* *
113705401 TCGA
124 TTGC
* *
113705405 AACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACTTTGAACATTGTCTTATTTTAGAAT
1 AACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGTCTTATTTTAGAAT
* * *
113705470 TTAGAAAACGTGAGTGAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGGGAAATTGC
66 TTAGAAAACGTGAGTGAAATTCTAAAGGGATACTCGATTATTTTGAACAAACGAGAAATTGC
* * * * * * *
113705532 AACCCAGCACGATAGGGCACGATTCCCCAAATTGCCAAACATTAAACGTTGCCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGTCTT-ATTTT--AG
** * * * *
113705597 AATTTTTAAAGACATGAGTGAAATTCCAAAGGAATACTCGATTATTTTGAACAAACGGGAAATTG
63 AATTTAGAAA-ACGTGAGTGAAATTCTAAAGGGATACTCGATTATTTTGAACAAACGAGAAATTG
113705662 C
127 C
*
113705663 AACCCAGCACGATAGGGCACGATT-CTCCGAATTTCCAAACATAGAACATTG
1 AACCCAGCACGATAGGGCACGATTCCT-CGAATTTCCAAACATTGAACATTG
113705714 CCTTCGTTTT
Statistics
Matches: 325, Mismatches: 84, Indels: 42
0.72 0.19 0.09
Matches are distributed among these distances:
121 9 0.03
122 11 0.03
123 37 0.11
124 25 0.08
125 6 0.02
126 25 0.08
127 84 0.26
128 15 0.05
129 9 0.03
130 11 0.03
131 93 0.29
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (127 bp):
AACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGTCTTATTTTAGAAT
TTAGAAAACGTGAGTGAAATTCTAAAGGGATACTCGATTATTTTGAACAAACGAGAAATTGC
Found at i:113705476 original size:250 final size:251
Alignment explanation
Indices: 113705034--113705547 Score: 1003
Period size: 250 Copynumber: 2.1 Consensus size: 251
113705024 AGCATCACAT
113705034 CCAGCACGATAGGATACGATCCTTTATACCCCCGAAAACAACGATAAATTTTGACTTCCGAAAGT
1 CCAGCACGATAGGATACGATCCTTTATACCCCCGAAAACAACGATAAATTTTGACTTCCGAAAGT
113705099 TTAGACATTGAAAATTACAAAAGGATGCCCAATTATTAAGTCCAACAAAAAATCGAAACCCAGCA
66 TTAGACATTGAAAATTACAAAAGGATGCCCAATTATTAAGTCCAACAAAAAATCGAAACCCAGCA
113705164 CGGTAGGACACGATTCCTCGAATTTCCAAACTTTGAACATTGTCTTATTTTAGAATTTAGAAAAC
131 CGGTAGGACACGATTCCTCGAATTTCCAAACTTTGAACATTGTCTTATTTTAGAATTTAGAAAAC
113705229 GTGAGTGAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATTGCAAC
196 GTGAGTGAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATTGCAAC
113705285 CCAGCACGATAGGATACGATCCTTTATA-CCCCGAAAACAACGATAAATTTTGACTTCCGAAAGT
1 CCAGCACGATAGGATACGATCCTTTATACCCCCGAAAACAACGATAAATTTTGACTTCCGAAAGT
113705349 TTAGACATTGAAAATTACAAAAGGATGCCCAATTATTAAGTCCAACAAAAAATCGAAACCCAGCA
66 TTAGACATTGAAAATTACAAAAGGATGCCCAATTATTAAGTCCAACAAAAAATCGAAACCCAGCA
*
113705414 CGGTAGGGCACGATTCCTCGAATTTCCAAACTTTGAACATTGTCTTATTTTAGAATTTAGAAAAC
131 CGGTAGGACACGATTCCTCGAATTTCCAAACTTTGAACATTGTCTTATTTTAGAATTTAGAAAAC
*
113705479 GTGAGTGAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGGGAAATTGCAAC
196 GTGAGTGAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATTGCAAC
113705535 CCAGCACGATAGG
1 CCAGCACGATAGG
113705548 GCACGATTCC
Statistics
Matches: 261, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
250 233 0.89
251 28 0.11
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (251 bp):
CCAGCACGATAGGATACGATCCTTTATACCCCCGAAAACAACGATAAATTTTGACTTCCGAAAGT
TTAGACATTGAAAATTACAAAAGGATGCCCAATTATTAAGTCCAACAAAAAATCGAAACCCAGCA
CGGTAGGACACGATTCCTCGAATTTCCAAACTTTGAACATTGTCTTATTTTAGAATTTAGAAAAC
GTGAGTGAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATTGCAAC
Found at i:113714025 original size:15 final size:16
Alignment explanation
Indices: 113714007--113714048 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
113713997 GATCATTAAA
113714007 TTTTAATTTATT-ATG
1 TTTTAATTTATTAATG
113714022 TTTTAA-TTATTAATG
1 TTTTAATTTATTAATG
113714037 TTATTAATTTAT
1 TT-TTAATTTAT
113714049 AACATTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.21
15 11 0.46
16 4 0.17
17 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (16 bp):
TTTTAATTTATTAATG
Found at i:113714033 original size:14 final size:14
Alignment explanation
Indices: 113713987--113714045 Score: 55
Period size: 15 Copynumber: 4.0 Consensus size: 14
113713977 TATATTTTAA
* *
113713987 ATTATGTTTTGATC
1 ATTATGTTTTAATT
**
113714001 ATTAAATTTTAATTT
1 ATTATGTTTTAA-TT
113714016 ATTATGTTTTAATT
1 ATTATGTTTTAATT
113714030 ATTAATGTTATTAATT
1 ATT-ATGTT-TTAATT
113714046 TATAACATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 14 0.39
15 16 0.44
16 6 0.17
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (14 bp):
ATTATGTTTTAATT
Found at i:113714033 original size:29 final size:31
Alignment explanation
Indices: 113713987--113714062 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
113713977 TATATTTTAA
*
113713987 ATTATGTTTTGATCATTAA-ATT-TTAATTT
1 ATTATGTTTTAATCATTAATATTATTAATTT
* *
113714016 ATTATGTTTTAATTATTAATGTTATTAATTT
1 ATTATGTTTTAATCATTAATATTATTAATTT
* **
113714047 ATAACATTTTAATCAT
1 ATTATGTTTTAATCAT
113714063 CGTGATATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 17 0.45
30 2 0.05
31 19 0.50
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (31 bp):
ATTATGTTTTAATCATTAATATTATTAATTT
Found at i:113715427 original size:14 final size:14
Alignment explanation
Indices: 113715386--113715437 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
113715376 ACAAATCAAT
*
113715386 AATATTAATGATTAA
1 AATA-TAATAATTAA
*
113715401 AACATAATAAATTAA
1 AATATAAT-AATTAA
*
113715416 AATTTAATAATTAA
1 AATATAATAATTAA
113715430 AATATAAT
1 AATATAAT
113715438 TTAAATAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 17 0.55
15 14 0.45
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (14 bp):
AATATAATAATTAA
Done.