Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 348 of 349
Found at i:114839095 original size:32 final size:32
Alignment explanation
Indices: 114839054--114839117 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
114839044 GCCATGGTAT
114839054 CTTTCAACCATGGTCTTACACATTTCATATCA
1 CTTTCAACCATGGTCTTACACATTTCATATCA
114839086 CTTTCAACCATGGTCTTACACATTTCATATCA
1 CTTTCAACCATGGTCTTACACATTTCATATCA
114839118 GGTTGCCATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.38
Consensus pattern (32 bp):
CTTTCAACCATGGTCTTACACATTTCATATCA
Found at i:114839137 original size:78 final size:78
Alignment explanation
Indices: 114839008--114839163 Score: 267
Period size: 78 Copynumber: 2.0 Consensus size: 78
114838998 GCCATGGTAT
*** *
114839008 CTTTCAACAATGGTCTTGTTCATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACAATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
114839073 ACATTTCATATCA
66 ACATTTCATATCA
*
114839086 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACAATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
114839151 ACATTTCATATCA
66 ACATTTCATATCA
114839164 GACTGCCATG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (78 bp):
CTTTCAACAATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
ACATTTCATATCA
Found at i:114839138 original size:46 final size:46
Alignment explanation
Indices: 114839086--114839302 Score: 407
Period size: 46 Copynumber: 4.7 Consensus size: 46
114839076 TTTCATATCA
*
114839086 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
*
114839132 CTTTCAACCATGGTCTTACACATTTCATATCAGACTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
*
114839178 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
114839224 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
114839270 CTTTCAACCATGGTCTTACACATTTCATATCAG
1 CTTTCAACCATGGTCTTACACATTTCATATCAG
114839303 AGAGCACACT
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 166 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (46 bp):
CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
Found at i:114839182 original size:124 final size:130
Alignment explanation
Indices: 114838961--114839303 Score: 450
Period size: 124 Copynumber: 2.6 Consensus size: 130
114838951 TGCCATAGTG
* * * * *
114838961 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACAATGGTCTT
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT
*** *
114839025 GTTCATTTCATATCATG-TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-AT-A-T-C
65 ACACATTTCATATCA-GACTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAATCAGTCC
114839085 -A
129 GA
114839086 -CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
114839150 CACATTTCATATCAGACTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
66 CACATTTCATATCAGACTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA-ATCA-G-T-
114839215 CCATGGTA
127 CC---G-A
*
114839223 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
114839288 CACATTTCATATCAGA
66 CACATTTCATATCAGA
114839304 GAGCACACTC
Statistics
Matches: 192, Mismatches: 10, Indels: 19
0.87 0.05 0.09
Matches are distributed among these distances:
123 5 0.03
124 102 0.53
126 2 0.01
127 1 0.01
130 1 0.01
132 1 0.01
137 1 0.01
138 79 0.41
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (130 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCAGACTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAATCAGTCCGA
Found at i:114845010 original size:24 final size:24
Alignment explanation
Indices: 114844978--114845028 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
114844968 TAATATAAAG
114844978 ACAAATGTATAG-TAAATAAAATAT
1 ACAAATGTATAGATAAA-AAAATAT
* * *
114845002 ACAAGTGTATGGATAAAAATATAT
1 ACAAATGTATAGATAAAAAAATAT
114845026 ACA
1 ACA
114845029 TTTGTAATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (24 bp):
ACAAATGTATAGATAAAAAAATAT
Found at i:114845334 original size:20 final size:21
Alignment explanation
Indices: 114845300--114845340 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
114845290 GCAGGGGAAG
114845300 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
*
114845321 GAAAGAAA-AAAAAGGGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
114845341 TCAAAGATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGAAAAAGAGAAAA
Found at i:114845346 original size:21 final size:21
Alignment explanation
Indices: 114845301--114845347 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
114845291 CAGGGGAAGG
*
114845301 AAAGAAAGAAAAAGAGAAAAG
1 AAAGAAAGAAAAAGAGAAAAC
*
114845322 AAAGAAA-AAAAAGGGAAAATC
1 AAAGAAAGAAAAAGAGAAAA-C
114845343 AAAGA
1 AAAGA
114845348 TGTGAAGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (21 bp):
AAAGAAAGAAAAAGAGAAAAC
Found at i:114847225 original size:54 final size:54
Alignment explanation
Indices: 114847155--114847291 Score: 256
Period size: 54 Copynumber: 2.5 Consensus size: 54
114847145 ATTGTCGTTG
114847155 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
114847209 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
* *
114847263 CAGGGGATTTAGCCTGAACTAGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
114847292 ACTGTAAGGA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:114847392 original size:46 final size:46
Alignment explanation
Indices: 114847325--114847598 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
114847315 AGTGTGCTCT
*
114847325 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
114847371 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
114847417 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
114847463 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
114847509 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
114847555 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
114847599 TCATGTCAAA
Statistics
Matches: 214, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 213 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:114852966 original size:23 final size:23
Alignment explanation
Indices: 114852940--114852985 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
114852930 TAACTCTTTG
114852940 TTGTATTGATATCTCTCATTATT
1 TTGTATTGATATCTCTCATTATT
114852963 TTGTATTGATATCTCTCATTATT
1 TTGTATTGATATCTCTCATTATT
114852986 GATACTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.57
Consensus pattern (23 bp):
TTGTATTGATATCTCTCATTATT
Found at i:114856740 original size:30 final size:31
Alignment explanation
Indices: 114856683--114856742 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
114856673 TTACACCAAT
*
114856683 TCAAAATTTATGTATCAAATTGCATATTTAA
1 TCAAAATTCATGTATCAAATTGCATATTTAA
*
114856714 TCAAAATTCATTTAT-AAATTTG-ATATTTA
1 TCAAAATTCATGTATCAAA-TTGCATATTTA
114856743 TCTTATTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (31 bp):
TCAAAATTCATGTATCAAATTGCATATTTAA
Found at i:114861647 original size:20 final size:20
Alignment explanation
Indices: 114861622--114861671 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
114861612 TGGCTTAAAA
114861622 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
114861642 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
114861659 GTGGTAGTGGATT
1 TTGGTAGTGGATT
114861672 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:114866275 original size:20 final size:20
Alignment explanation
Indices: 114866250--114866299 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
114866240 TGGCTTAAAA
114866250 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
114866270 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
114866287 GTGGTAGTGGATT
1 TTGGTAGTGGATT
114866300 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:114868308 original size:22 final size:22
Alignment explanation
Indices: 114868283--114868324 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
114868273 TATTCTTTTT
*
114868283 TTTTTTCACAATTTTGTTGTTG
1 TTTTCTCACAATTTTGTTGTTG
**
114868305 TTTTCTCACTGTTTTGTTGT
1 TTTTCTCACAATTTTGTTGT
114868325 CATTATGTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.10, C:0.12, G:0.14, T:0.64
Consensus pattern (22 bp):
TTTTCTCACAATTTTGTTGTTG
Found at i:114868756 original size:23 final size:23
Alignment explanation
Indices: 114868719--114868778 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
114868709 ATATTTTTAA
114868719 ATTTATTTTCAAATAGTTTGGAAAT
1 ATTTATTTT--AATAGTTTGGAAAT
* * *
114868744 ATTTATTTTAATATTTTTGATAT
1 ATTTATTTTAATAGTTTGGAAAT
114868767 ATTATATTTTAA
1 ATT-TATTTTAA
114868779 AATTCTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.45
24 8 0.26
25 9 0.29
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
ATTTATTTTAATAGTTTGGAAAT
Found at i:114868774 original size:24 final size:23
Alignment explanation
Indices: 114868742--114868791 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
114868732 TAGTTTGGAA
*
114868742 ATATTTATTTTAATATT-TTTGAT
1 ATATTTATTTTAAAATTCTTT-AT
114868765 ATATTATATTTTAAAATTCTTTAT
1 ATATT-TATTTTAAAATTCTTTAT
114868789 ATA
1 ATA
114868792 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 16 0.67
25 3 0.12
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
ATATTTATTTTAAAATTCTTTAT
Found at i:114877869 original size:113 final size:113
Alignment explanation
Indices: 114877668--114877885 Score: 282
Period size: 113 Copynumber: 1.9 Consensus size: 113
114877658 TTTGAAGAAC
* * *
114877668 GAAAACGCGGGAGAGTTTTGAATTTTTTTGTTTTGTTTGATGGGTTTAAACCTTCATCTAATCCC
1 GAAAACGCGGGAGAGGTTTGAA--TTTTTGTTTTGTTTGATAGGTTCAAACCTTCATCTAATCCC
* * *
114877733 TTTGGTTTTTTAATATTTAAAATTTAGTTCCTCTATTTTTAATATGGAGGAAA
64 TGTGATTTTTTAATATTTAAAATTCAG-TCCT-T-TTTTTAATATGGAGGAAA
*
114877786 GAAAACGCGGGAGAGGTTTGAA-TTTT-TTTTGTTT-ATAGG-TCAAACTCTTCTTCTAATCCCT
1 GAAAACGCGGGAGAGGTTTGAATTTTTGTTTTGTTTGATAGGTTCAAAC-CTTCATCTAATCCCT
*
114877847 GTGATTTTTTAGTATTTAAAATTCAGTCCTTTTTTTAAT
65 GTGATTTTTTAATATTTAAAATTCAGTCCTTTTTTTAAT
114877886 CTCATGAATT
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
110 8 0.09
111 1 0.01
112 9 0.10
113 40 0.44
114 8 0.09
115 4 0.04
118 21 0.23
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (113 bp):
GAAAACGCGGGAGAGGTTTGAATTTTTGTTTTGTTTGATAGGTTCAAACCTTCATCTAATCCCTG
TGATTTTTTAATATTTAAAATTCAGTCCTTTTTTTAATATGGAGGAAA
Found at i:114878963 original size:14 final size:14
Alignment explanation
Indices: 114878946--114878983 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
114878936 AATATAATTT
114878946 TAAAAATTAA-AATA
1 TAAAAATTAATAA-A
114878960 TAAAAA-TAATAAA
1 TAAAAATTAATAAA
114878973 TAAAAATTAAT
1 TAAAAATTAAT
114878984 TTAAAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAAAATTAATAAA
Found at i:114879407 original size:21 final size:21
Alignment explanation
Indices: 114879383--114879434 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
114879373 TATATATAAG
*
114879383 AATAAAATAGTAATTTCATAT
1 AATAAAACAGTAATTTCATAT
114879404 AATAAAACAGTAATTTCATAT
1 AATAAAACAGTAATTTCATAT
114879425 AATAAAACAG
1 AATAAAACAG
114879435 GATGGAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.31
Consensus pattern (21 bp):
AATAAAACAGTAATTTCATAT
Found at i:114883871 original size:16 final size:16
Alignment explanation
Indices: 114883850--114883920 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
114883840 GTTTGGTTCA
*
114883850 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
**
114883866 CTGTAATTTAATAGAG
1 CTGTAATGGAATAGAG
*
114883882 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
114883898 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
114883914 CTGTAAT
1 CTGTAAT
114883921 AAGTAATTCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:114883994 original size:44 final size:46
Alignment explanation
Indices: 114883902--114883994 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 46
114883892 ATAGAGCTGT
* *
114883902 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAAAGG
***
114883948 AATGAAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAAAGG
1 AATGAAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAAAGG
114883992 AAT
1 AAT
114883995 AATGTTGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 21 0.50
45 3 0.07
46 18 0.43
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (46 bp):
AATGAAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAAAGG
Found at i:114884189 original size:17 final size:17
Alignment explanation
Indices: 114884167--114884199 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
114884157 AATTATTATT
114884167 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
114884184 AAATATAATTTAATAA
1 AAATATAATTTAATAA
114884200 CATTCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:114884727 original size:18 final size:18
Alignment explanation
Indices: 114884704--114884738 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
114884694 ACGTGGTAGT
*
114884704 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
114884722 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
114884739 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:114884797 original size:40 final size:40
Alignment explanation
Indices: 114884746--114884990 Score: 373
Period size: 40 Copynumber: 6.1 Consensus size: 40
114884736 AGTATATCTG
* * *
114884746 TTAATACATACTTCATCCGGGTAAATTATACAATTTTCTG
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* *
114884786 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTTTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* *
114884826 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* *
114884866 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTG
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
*
114884906 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* * *
114884946 TTAATATATACTTCATCCGGATAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
114884986 TTAAT
1 TTAAT
114884991 GTGCTTGTGA
Statistics
Matches: 187, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 187 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.41
Consensus pattern (40 bp):
TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
Found at i:114884959 original size:120 final size:120
Alignment explanation
Indices: 114884746--114884990 Score: 445
Period size: 120 Copynumber: 2.0 Consensus size: 120
114884736 AGTATATCTG
*
114884746 TTAATACATACTTCATCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGGTAAA
1 TTAATACATACTTCACCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGGTAAA
*
114884811 TTATACAGTTTTTTATTAATACATACTTCATCCGGATAAATTATACAGTTTTCTA
66 TTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTTTCTA
* *
114884866 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTGTTAATACATACTTTACCCGGGTAAA
1 TTAATACATACTTCACCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGGTAAA
*
114884931 TTATACAGTTTTCTATTAATATATACTTCATCCGGATAAATTATACAGTTTTCTA
66 TTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTTTCTA
114884986 TTAAT
1 TTAAT
114884991 GTGCTTGTGA
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.41
Consensus pattern (120 bp):
TTAATACATACTTCACCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGGTAAA
TTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTTTCTA
Found at i:114891680 original size:25 final size:25
Alignment explanation
Indices: 114891646--114891695 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
114891636 GTTGTAGTCG
114891646 CCTAATAGTCAAGGTGTTTCAGTTT
1 CCTAATAGTCAAGGTGTTTCAGTTT
114891671 CCTAATAGTCAAGGTGTTTCAGTTT
1 CCTAATAGTCAAGGTGTTTCAGTTT
114891696 ACTTTCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (25 bp):
CCTAATAGTCAAGGTGTTTCAGTTT
Found at i:114893028 original size:6 final size:6
Alignment explanation
Indices: 114893017--114893045 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
114893007 ATGAGCTTCA
114893017 CTCCAC CTCCAC CTCCAC CTCCAC CTCCA
1 CTCCAC CTCCAC CTCCAC CTCCAC CTCCA
114893046 GTGTTTGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.66, G:0.00, T:0.17
Consensus pattern (6 bp):
CTCCAC
Found at i:114895706 original size:15 final size:14
Alignment explanation
Indices: 114895688--114895718 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
114895678 TTAATTTATT
114895688 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
114895703 TAATAATAATCTAA
1 TAATAATAATCTAA
114895717 TA
1 TA
114895719 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:114895729 original size:21 final size:20
Alignment explanation
Indices: 114895705--114895773 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
114895695 AATGCTAATA
114895705 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
114895726 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
114895745 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
114895766 ATAATAAT
1 ATAATAAT
114895774 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:114903007 original size:31 final size:29
Alignment explanation
Indices: 114902961--114903020 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
114902951 TTTTTAATTT
114902961 AACTCGAACAATTTCACTTGATTCGACTC
1 AACTCGAACAATTTCACTTGATTCGACTC
* *
114902990 AACTCGACACAAATTTCATTTTATTCGACTC
1 AACTCGA-AC-AATTTCACTTGATTCGACTC
114903021 GATTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 7 0.26
30 2 0.07
31 18 0.67
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (29 bp):
AACTCGAACAATTTCACTTGATTCGACTC
Found at i:114908148 original size:21 final size:21
Alignment explanation
Indices: 114908122--114908161 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
114908112 ATCTGCTCAA
* *
114908122 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
114908143 ACTCCACCTGCTGTGGAGT
1 ACTCCACCTGCTGTGGAGT
114908162 TTCACTCGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.23, T:0.30
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:114921981 original size:21 final size:21
Alignment explanation
Indices: 114921955--114921995 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
114921945 ATCTGCTCAA
* *
114921955 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
114921976 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
114921996 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:114941582 original size:24 final size:24
Alignment explanation
Indices: 114941550--114941599 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
114941540 AGTAACGATG
114941550 TATGTGCATGAATATGGAACTAAT
1 TATGTGCATGAATATGGAACTAAT
114941574 TATGTGCATGAATATGGAACTAAT
1 TATGTGCATGAATATGGAACTAAT
114941598 TA
1 TA
114941600 CACAGACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (24 bp):
TATGTGCATGAATATGGAACTAAT
Found at i:114941903 original size:15 final size:15
Alignment explanation
Indices: 114941883--114941960 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
114941873 TTTATGGAAA
114941883 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
114941898 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
114941912 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
114941928 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
114941942 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
114941958 ATC
1 ATC
114941961 GAGATATTGG
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:114941920 original size:30 final size:30
Alignment explanation
Indices: 114941879--114941960 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
114941869 CATATTTATG
*
114941879 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
114941909 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
114941939 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
114941961 GAGATATTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:114946552 original size:15 final size:15
Alignment explanation
Indices: 114946532--114946639 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
114946522 TTTATGGAAA
114946532 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
114946547 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
114946561 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
114946577 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
114946591 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
114946607 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
114946621 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
114946637 ATC
1 ATC
114946640 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:114946569 original size:30 final size:30
Alignment explanation
Indices: 114946526--114946649 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
114946516 TCCATATTTA
* *
114946526 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
114946556 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
114946586 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
114946616 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
114946647 TGG
1 TGG
114946650 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:114958426 original size:55 final size:55
Alignment explanation
Indices: 114958367--114958477 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
114958357 ATTCGGATTC
114958367 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
1 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
114958422 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
1 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
114958477 G
1 G
114958478 CTAAACGCCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (55 bp):
GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
Found at i:114968973 original size:9 final size:9
Alignment explanation
Indices: 114968959--114968992 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
114968949 TTAAATAATT
114968959 ATTTTAAAA
1 ATTTTAAAA
114968968 ATTTTAAAA
1 ATTTTAAAA
*
114968977 A-TTAAAAA
1 ATTTTAAAA
114968985 ATTTTAAA
1 ATTTTAAA
114968993 TATTAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:114968986 original size:17 final size:17
Alignment explanation
Indices: 114968964--114968999 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
114968954 TAATTATTTT
114968964 AAAAATTTTAAAAATTA
1 AAAAATTTTAAAAATTA
*
114968981 AAAAATTTTAAATATTA
1 AAAAATTTTAAAAATTA
114968998 AA
1 AA
114969000 TTGGTGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAAATTTTAAAAATTA
Found at i:114970199 original size:100 final size:101
Alignment explanation
Indices: 114970025--114970229 Score: 349
Period size: 100 Copynumber: 2.0 Consensus size: 101
114970015 GTTAGGTAGA
* * *
114970025 ATTTTGCTTTTAATTTGATGAATTTATTTTACTCTGAGTGAGCTAGCGGTTGTATTTGTGATGAT
1 ATTTTGCGTTTAATTTAATGAATTTATTTTACTCGGAGTGAGCTAGCGGTTGTATTTGTGATGAT
* *
114970090 ATATTGTTAATTGATTAGAGATTAGTATTTGTTATG
66 ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
*
114970126 ATTTTGCGTTTAATTTAATGAATTTA-TTTACTCGGAGTGAGCTAGCTGTTGTATTTGTGATGAT
1 ATTTTGCGTTTAATTTAATGAATTTATTTTACTCGGAGTGAGCTAGCGGTTGTATTTGTGATGAT
114970190 ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
66 ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
114970226 ATTT
1 ATTT
114970230 AGTATTGATG
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
100 74 0.76
101 24 0.24
ACGTcount: A:0.25, C:0.05, G:0.20, T:0.49
Consensus pattern (101 bp):
ATTTTGCGTTTAATTTAATGAATTTATTTTACTCGGAGTGAGCTAGCGGTTGTATTTGTGATGAT
ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
Found at i:114978271 original size:23 final size:23
Alignment explanation
Indices: 114978245--114978301 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
114978235 AGGTGATTAT
114978245 ATATAAAATTATAATAAATTAAA
1 ATATAAAATTATAATAAATTAAA
*
114978268 ATATATAAATT-TATTAAATTAAA
1 ATATA-AAATTATAATAAATTAAA
114978291 ATA-AATAATTA
1 ATATAA-AATTA
114978302 AATTTACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
23 19 0.63
24 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
ATATAAAATTATAATAAATTAAA
Found at i:114979281 original size:20 final size:20
Alignment explanation
Indices: 114979258--114979316 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
114979248 TTTTTTAGAT
114979258 AATTATGTTTATTTTTTTTA
1 AATTATGTTTATTTTTTTTA
* *
114979278 AATTAAGAGTTA-TTTTTTTA
1 AATTATG-TTTATTTTTTTTA
*
114979298 ATTTTATGTATTATTTTTT
1 A-ATTATGT-TTATTTTTT
114979317 CATTTAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
20 15 0.50
21 10 0.33
22 5 0.17
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (20 bp):
AATTATGTTTATTTTTTTTA
Found at i:114979328 original size:19 final size:20
Alignment explanation
Indices: 114979291--114979328 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
114979281 TAAGAGTTAT
*
114979291 TTTTTTAATTTTATGTATTA
1 TTTTTTAATTTAATGTATTA
*
114979311 TTTTTTCATTTAAT-TATT
1 TTTTTTAATTTAATGTATT
114979329 TTCACATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTTTTAATTTAATGTATTA
Found at i:114983242 original size:21 final size:21
Alignment explanation
Indices: 114983218--114983265 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
114983208 CCAAGAAGCT
114983218 CTTGGTTCATCAAATGAAAAC
1 CTTGGTTCATCAAATGAAAAC
**
114983239 CTTGAATCATCAAATGAAAAC
1 CTTGGTTCATCAAATGAAAAC
114983260 CTTGGT
1 CTTGGT
114983266 GGAGCTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.29
Consensus pattern (21 bp):
CTTGGTTCATCAAATGAAAAC
Found at i:114984080 original size:25 final size:24
Alignment explanation
Indices: 114984049--114984107 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 24
114984039 TATATGGAAA
114984049 AAAAAATTAAATTCATTAAACTATT
1 AAAAAATTAAATTCATTAAA-TATT
* * * *
114984074 AATAAATTTACATTTATTAAATTTT
1 AA-AAAATTAAATTCATTAAATATT
114984099 AAAAAATTA
1 AAAAAATTA
114984108 TAAAATAGTC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 6 0.21
25 7 0.25
26 15 0.54
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (24 bp):
AAAAAATTAAATTCATTAAATATT
Found at i:114984206 original size:99 final size:100
Alignment explanation
Indices: 114984090--114984286 Score: 351
Period size: 100 Copynumber: 2.0 Consensus size: 100
114984080 TTTACATTTA
* *
114984090 TTAAATTTTAAAAAATTATAAAATAGTCACTAAATTATCTGAAA-ATTTTATTTAAGTCATTGGG
1 TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAAGTCATTGGG
*
114984154 TTATTAAGTTTTTATTTAAGCAACGGTTCATATGG
66 TTATCAAGTTTTTATTTAAGCAACGGTTCATATGG
*
114984189 TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAATTCATTGGG
1 TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAAGTCATTGGG
114984254 TTATCAAGTTTTTATTTAAGCAACGGTTCATAT
66 TTATCAAGTTTTTATTTAAGCAACGGTTCATAT
114984287 AGTGGGCCAA
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 42 0.45
100 51 0.55
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (100 bp):
TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAAGTCATTGGG
TTATCAAGTTTTTATTTAAGCAACGGTTCATATGG
Found at i:114985014 original size:24 final size:25
Alignment explanation
Indices: 114984968--114985014 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
114984958 TACAATGACT
*
114984968 AATTTTTAAAAGTAAAGATTAATGA
1 AATTTTTAAAAGTAAAGACTAATGA
* *
114984993 AATTTTTAACAG-AATGACTAAT
1 AATTTTTAAAAGTAAAGACTAAT
114985015 TTGTTTCTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (25 bp):
AATTTTTAAAAGTAAAGACTAATGA
Found at i:114988019 original size:20 final size:19
Alignment explanation
Indices: 114987961--114988021 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 19
114987951 ATAATTCTAA
*
114987961 AAAATTATA-AAAAATCTT
1 AAAATTATATAAAAATATT
* * *
114987979 AAAAATAAATATAAATGATT
1 AAAATTATATAAAAAT-ATT
114987999 AAAATTATATTAAAAATATT
1 AAAATTATA-TAAAAATATT
114988019 AAA
1 AAA
114988022 TCAAAAGCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
18 7 0.21
19 5 0.15
20 15 0.45
21 6 0.18
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATTATATAAAAATATT
Found at i:114990934 original size:10 final size:10
Alignment explanation
Indices: 114990919--114990943 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
114990909 ATTTTTTTAT
114990919 TTTATAATAA
1 TTTATAATAA
114990929 TTTATAATAA
1 TTTATAATAA
114990939 TTTAT
1 TTTAT
114990944 TTAATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTATAATAA
Found at i:114995966 original size:19 final size:20
Alignment explanation
Indices: 114995937--114995991 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
114995927 TAAATATAAT
*
114995937 TTTTAAAATTTCTATAAA-TA
1 TTTTAAAATTT-TAAAAATTA
114995957 TTTT-AAATTTTAAAAATTA
1 TTTTAAAATTTTAAAAATTA
*
114995976 TTTTGAAGATTTTAAA
1 TTTT-AAAATTTTAAA
114995992 GTTATTCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 5 0.17
19 12 0.40
20 4 0.13
21 9 0.30
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
TTTTAAAATTTTAAAAATTA
Found at i:114996005 original size:21 final size:21
Alignment explanation
Indices: 114995924--114996005 Score: 55
Period size: 21 Copynumber: 4.0 Consensus size: 21
114995914 TTTTATATAT
* * * *
114995924 TTTTAAATATAATTTTTAAAA
1 TTTTAAAAATTATTTTCAAGA
*
114995945 TTTCTATAAA-TATTTT-AA-A
1 TTT-TAAAAATTATTTTCAAGA
*
114995964 TTTTAAAAATTATTTTGAAGA
1 TTTTAAAAATTATTTTCAAGA
*
114995985 TTTT-AAAGTTATTCTTCAAGA
1 TTTTAAAAATTATT-TTCAAGA
114996006 AAATAAACCA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 5 0.10
19 10 0.20
20 12 0.24
21 19 0.38
22 4 0.08
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (21 bp):
TTTTAAAAATTATTTTCAAGA
Found at i:114999868 original size:33 final size:33
Alignment explanation
Indices: 114999826--114999891 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
114999816 TTAGATGGTA
114999826 GCTTACACTAATACGCATAACGATAAATTATTT
1 GCTTACACTAATACGCATAACGATAAATTATTT
*
114999859 GCTTACACTAATACGCATAATGATAAATTATTT
1 GCTTACACTAATACGCATAACGATAAATTATTT
114999892 ATGTTTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (33 bp):
GCTTACACTAATACGCATAACGATAAATTATTT
Found at i:115005000 original size:15 final size:16
Alignment explanation
Indices: 115004966--115005003 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
115004956 AAAATTTAAT
*
115004966 TAATTAATTTAAACAA
1 TAATAAATTTAAACAA
*
115004982 TAATAAATTTATA-AA
1 TAATAAATTTAAACAA
115004997 TAATAAA
1 TAATAAA
115005004 AGAATCAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATAAATTTAAACAA
Found at i:115009798 original size:13 final size:13
Alignment explanation
Indices: 115009780--115009804 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115009770 AGTATCGAAT
115009780 TTTTTAATTAATG
1 TTTTTAATTAATG
115009793 TTTTTAATTAAT
1 TTTTTAATTAAT
115009805 AAACATCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:115018624 original size:13 final size:13
Alignment explanation
Indices: 115018606--115018630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115018596 ATATTGTTTT
115018606 TTCAGTGTTTTAA
1 TTCAGTGTTTTAA
115018619 TTCAGTGTTTTA
1 TTCAGTGTTTTA
115018631 GTTGGATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (13 bp):
TTCAGTGTTTTAA
Found at i:115024816 original size:16 final size:16
Alignment explanation
Indices: 115024795--115024829 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
115024785 AATTGGGTGG
115024795 TTTGGGT-TGAAGTTAA
1 TTTGGGTATGAA-TTAA
115024811 TTTGGGTATGAATTAA
1 TTTGGGTATGAATTAA
115024827 TTT
1 TTT
115024830 CAAGTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (16 bp):
TTTGGGTATGAATTAA
Found at i:115028979 original size:139 final size:138
Alignment explanation
Indices: 115028729--115029057 Score: 613
Period size: 139 Copynumber: 2.4 Consensus size: 138
115028719 TTCCACATTT
* * *
115028729 TAACAAATTGATACCTATATAAGCAAAGATCAAAACTTTAGCATAATTGATAACAGCTATGAAAT
1 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
115028794 CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTTTTAAC
66 CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACA-TTTTTAAC
115028859 AGTGTAAGG
130 AGTGTAAGG
115028868 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
1 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
*
115028933 GAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTTTAACA
66 CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTTTAACA
115028998 GTGTAAGG
131 GTGTAAGG
115029006 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATA
1 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATA
115029058 CCACTAACTA
Statistics
Matches: 186, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
138 69 0.37
139 117 0.63
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.28
Consensus pattern (138 bp):
TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTTTAACA
GTGTAAGG
Found at i:115039859 original size:17 final size:17
Alignment explanation
Indices: 115039837--115039870 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
115039827 CAAGCTTTGT
115039837 CATCTAATGTAAATTAG
1 CATCTAATGTAAATTAG
115039854 CATCTAATGTAAATTAG
1 CATCTAATGTAAATTAG
115039871 ATGAACTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
CATCTAATGTAAATTAG
Found at i:115039892 original size:20 final size:20
Alignment explanation
Indices: 115039867--115039909 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
115039857 CTAATGTAAA
115039867 TTAGATGAACTCTTAAACTC
1 TTAGATGAACTCTTAAACTC
115039887 TTAGATGAACTCTTAAACTC
1 TTAGATGAACTCTTAAACTC
115039907 TTA
1 TTA
115039910 AAGTGATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
TTAGATGAACTCTTAAACTC
Found at i:115042648 original size:62 final size:60
Alignment explanation
Indices: 115042576--115042780 Score: 241
Period size: 62 Copynumber: 3.3 Consensus size: 60
115042566 GCATACATTC
115042576 TTTGCCTTCAATTCAATAAATTCAACCAAAGAAGAGGGACCTTTAGGTCATATTACCCAACA
1 TTTGCCTTCAATTCAATAAATTCAACCAAA-AAGAGGGACCTTTAGGTCA-ATTACCCAACA
* * *
115042638 TTTGCCTTCAATTTACCCAAAAAATTCAACCAAAAAAGAGGAACC-TTAGGTCAATTTACCTAAC
1 TTTGCCTTCAA-TT---CAATAAATTCAACC-AAAAAGAGGGACCTTTAGGTCAA-TTACCCAAC
115042702 A
60 A
* * * *
115042703 TTTGCCTTCAATTCCATAAATTCAAGCAGAAAAGAGGGATCTTTAGGTCAATTAACCCAATA
1 TTTGCCTTCAATTCAATAAATTCAACCA-AAAAGAGGGACCTTTAGGTCAATT-ACCCAACA
*
115042765 TTTGCTTTCAATTCAA
1 TTTGCCTTCAATTCAA
115042781 AACCCAACAT
Statistics
Matches: 122, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
60 1 0.01
61 23 0.19
62 40 0.33
63 2 0.02
64 3 0.02
65 28 0.23
66 22 0.18
67 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (60 bp):
TTTGCCTTCAATTCAATAAATTCAACCAAAAAGAGGGACCTTTAGGTCAATTACCCAACA
Found at i:115043573 original size:24 final size:25
Alignment explanation
Indices: 115043531--115043593 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 25
115043521 AATGAAATTC
* *
115043531 AAATTAAATT-CAATAATTTTGT-TT
1 AAATTAAATTAAAATAATTTT-TAAT
115043555 AAATTAAATTAAAAT-ATTTTTAAT
1 AAATTAAATTAAAATAATTTTTAAT
*
115043579 AAATTTAATTAAAAT
1 AAATTAAATTAAAAT
115043594 TTTATTAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.03
24 30 0.88
25 3 0.09
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
AAATTAAATTAAAATAATTTTTAAT
Found at i:115043601 original size:24 final size:24
Alignment explanation
Indices: 115043554--115043601 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
115043544 TAATTTTGTT
115043554 TAAATTAAATTAAAATATTTTTAA
1 TAAATTAAATTAAAATATTTTTAA
*
115043578 TAAATTTAATTAAAAT-TTTATTAA
1 TAAATTAAATTAAAATATTT-TTAA
115043602 CAATCTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAATTAAATTAAAATATTTTTAA
Found at i:115044286 original size:48 final size:48
Alignment explanation
Indices: 115044234--115044329 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
115044224 TGTTTCATGC
115044234 TATAATATCGCTATAGTATTTAATCTCACCACCACCGCTGTTTTTACA
1 TATAATATCGCTATAGTATTTAATCTCACCACCACCGCTGTTTTTACA
*
115044282 TATAATATCGCTATAGTATTTAATCTCACTACCACCGCTGTTTTTACA
1 TATAATATCGCTATAGTATTTAATCTCACCACCACCGCTGTTTTTACA
115044330 CTAACCAGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (48 bp):
TATAATATCGCTATAGTATTTAATCTCACCACCACCGCTGTTTTTACA
Found at i:115048665 original size:62 final size:62
Alignment explanation
Indices: 115048568--115048695 Score: 238
Period size: 62 Copynumber: 2.1 Consensus size: 62
115048558 ACCTTTAGCT
*
115048568 TTGTTCCAAGCAACCCTAACCCTAAACTCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
1 TTGTTCCAAGCAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
*
115048630 TTGTTCCAAGGAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
1 TTGTTCCAAGCAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
115048692 TTGT
1 TTGT
115048696 GGAAAGGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (62 bp):
TTGTTCCAAGCAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
Found at i:115050336 original size:29 final size:29
Alignment explanation
Indices: 115050257--115050321 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
115050247 AAAATTTTAC
*
115050257 CACACT-ACAGTAATCACTCATTCAAAGT
1 CACACTAACAATAATCACTCATTCAAAGT
115050285 CACACTAACAATAATCACTCATTCAAAGT
1 CACACTAACAATAATCACTCATTCAAAGT
115050314 CACACTAA
1 CACACTAA
115050322 GTTATAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 6 0.17
29 29 0.83
ACGTcount: A:0.43, C:0.29, G:0.05, T:0.23
Consensus pattern (29 bp):
CACACTAACAATAATCACTCATTCAAAGT
Found at i:115053972 original size:18 final size:19
Alignment explanation
Indices: 115053930--115053976 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
115053920 ATATCTACTT
115053930 TTAATTTCATCGAATTAAA
1 TTAATTTCATCGAATTAAA
* * *
115053949 TAAATTTCATC-TATTATA
1 TTAATTTCATCGAATTAAA
115053967 TTAATTTCAT
1 TTAATTTCAT
115053977 TAAATCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (19 bp):
TTAATTTCATCGAATTAAA
Found at i:115062257 original size:275 final size:274
Alignment explanation
Indices: 115061758--115062260 Score: 690
Period size: 275 Copynumber: 1.8 Consensus size: 274
115061748 GGCACACATG
* * * *
115061758 GCCCATATACCTCCAAAAGGCCTTTTACCACTTAAGTGTTACTATCCTTTTATATAGTCTAGGTC
1 GCCCATATACCCCCAAAAGGCCTTTTACCACTTAAGTGTTACTACCCTTTTATATAGCCCAGGTC
* * * *
115061823 TCTCTTATGCTTTGATGATGTAGATTTCTCTAAGGTATTACATCCACCCCCCTTAGGGACTCAAT
66 TCTCTCATGCTTTGACGATGAAGATTTCTCTAAGGTATTACATCCACCCCCCTTAGAGACTCAAT
* * *
115061888 GTCCTCATTGAGGTTTGTCCCACCATCACTCAAGAAGCACAACAAGTGACTCTGATATCAATAAA
131 GTCCTCACTGAGGTTTGCCCCACCATCACTCAAGAAGCACAACAAATGACTCTGATATCAATAAA
* *
115061953 TGTCATAGCCAACACCTAACCCGGTAAGATATTGTTTGCTTTAAGCGCACATGACCCTTATAGCT
196 TGTCATAGCCAACACCCAACCCAGTAAGATATTGTTTGCTTTAAGCGCACATGACCCTTATAGCT
115062018 TTATTCTTGGGAGT
261 TTATTCTTGGGAGT
* *
115062032 GCCCATATACCCCCAAGAGGCCTTTTACCACTTAAGTGTTGCTACCCTTTTATATAGCCCAGGTC
1 GCCCATATACCCCCAAAAGGCCTTTTACCACTTAAGTGTTACTACCCTTTTATATAGCCCAGGTC
* * * *
115062097 TCTCTCGTGCTTTGCCGATGAAGGATTTGC-CTAGGGTATTACATTCACCCCCCTTAGAGAC-CT
66 TCTCTCATGCTTTGACGATGAA-GATTT-CTCTAAGGTATTACATCCACCCCCCTTAGAGACTC-
* * * * **
115062160 AATGTCTTCGCTGAGGTTTGCCCCACCATCGCTCAAGAGGCATGACAAAT-AGCTCTGATA-CTA
128 AATGTCCTCACTGAGGTTTGCCCCACCATCACTCAAGAAGCACAACAAATGA-CTCTGATATC-A
* *
115062223 ATAAATGTCATAGCCAATACCCAACCTAGTAAGATATT
191 ATAAATGTCATAGCCAACACCCAACCCAGTAAGATATT
115062261 ATCCGCTTTG
Statistics
Matches: 197, Mismatches: 27, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
274 79 0.40
275 117 0.59
276 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (274 bp):
GCCCATATACCCCCAAAAGGCCTTTTACCACTTAAGTGTTACTACCCTTTTATATAGCCCAGGTC
TCTCTCATGCTTTGACGATGAAGATTTCTCTAAGGTATTACATCCACCCCCCTTAGAGACTCAAT
GTCCTCACTGAGGTTTGCCCCACCATCACTCAAGAAGCACAACAAATGACTCTGATATCAATAAA
TGTCATAGCCAACACCCAACCCAGTAAGATATTGTTTGCTTTAAGCGCACATGACCCTTATAGCT
TTATTCTTGGGAGT
Found at i:115063481 original size:18 final size:18
Alignment explanation
Indices: 115063458--115063495 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
115063448 CCAAGATAGT
115063458 TGAATTGCTTCTTTAAGA
1 TGAATTGCTTCTTTAAGA
115063476 TGAATTGCTTCTTTAAGA
1 TGAATTGCTTCTTTAAGA
115063494 TG
1 TG
115063496 CATCATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.45
Consensus pattern (18 bp):
TGAATTGCTTCTTTAAGA
Found at i:115070937 original size:15 final size:15
Alignment explanation
Indices: 115070917--115070946 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
115070907 GTGATTCAGG
115070917 TCTCGAACACTAACC
1 TCTCGAACACTAACC
115070932 TCTCGAACACTAACC
1 TCTCGAACACTAACC
115070947 GTCAGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.07, T:0.20
Consensus pattern (15 bp):
TCTCGAACACTAACC
Found at i:115082571 original size:21 final size:22
Alignment explanation
Indices: 115082542--115082588 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
115082532 CAGAAGGAGT
*
115082542 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
115082564 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
115082585 GAGT
1 GAGT
115082589 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:115117763 original size:15 final size:15
Alignment explanation
Indices: 115117743--115117772 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
115117733 GGCGTGCCCT
115117743 TAAATACCATCTTTA
1 TAAATACCATCTTTA
115117758 TAAATACCATCTTTA
1 TAAATACCATCTTTA
115117773 CCATTGCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAATACCATCTTTA
Found at i:115123099 original size:32 final size:32
Alignment explanation
Indices: 115123058--115123122 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
115123048 CGATAACATA
*
115123058 ATATGATATTACACAAATCTGATGATCAAATT
1 ATATGATATTACACAAATCTGACGATCAAATT
*
115123090 ATATGATATTACACAGATCTGACGATCAAATT
1 ATATGATATTACACAAATCTGACGATCAAATT
115123122 A
1 A
115123123 AGTGTGGAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (32 bp):
ATATGATATTACACAAATCTGACGATCAAATT
Found at i:115129982 original size:27 final size:27
Alignment explanation
Indices: 115129951--115130018 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
115129941 CCTCAATGAA
115129951 GAAGCTGAGTTGAGTGAAGACGACATT
1 GAAGCTGAGTTGAGTGAAGACGACATT
*
115129978 GAAGCTCAGTTGAGTGAAGACGACATT
1 GAAGCTGAGTTGAGTGAAGACGACATT
115130005 GAAGCTGAGTTGAG
1 GAAGCTGAGTTGAG
115130019 AGAGAGAACT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.32, C:0.12, G:0.34, T:0.22
Consensus pattern (27 bp):
GAAGCTGAGTTGAGTGAAGACGACATT
Found at i:115131889 original size:12 final size:12
Alignment explanation
Indices: 115131844--115131899 Score: 60
Period size: 12 Copynumber: 4.5 Consensus size: 12
115131834 TGTTAAAATA
*
115131844 TATATATTAAAT
1 TATATATTATAT
115131856 TAT-TATTATATT
1 TATATATTATA-T
115131868 ATAGTATATTATAT
1 -TA-TATATTATAT
115131882 TATATATTATAT
1 TATATATTATAT
*
115131894 CATATA
1 TATATA
115131900 AATAAGTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 6 0.16
12 19 0.50
13 4 0.11
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (12 bp):
TATATATTATAT
Found at i:115131893 original size:5 final size:5
Alignment explanation
Indices: 115131841--115131886 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
115131831 ATGTGTTAAA
* *
115131841 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATT ATAT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATATT ATAT
115131887 ATTATATCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
5 27 0.77
6 8 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (5 bp):
ATATT
Found at i:115133237 original size:18 final size:19
Alignment explanation
Indices: 115133214--115133252 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
115133204 ATATATAGAT
115133214 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
115133232 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
115133251 AT
1 AT
115133253 TGAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:115133272 original size:23 final size:24
Alignment explanation
Indices: 115133227--115133274 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
115133217 TATATTGAAT
**
115133227 ATTGAATATATATTGATTATTTGA
1 ATTGAATATATATAAATTATTTGA
*
115133251 ATTGAATA-ATATAAATTGTTTGA
1 ATTGAATATATATAAATTATTTGA
115133274 A
1 A
115133275 AATTTTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (24 bp):
ATTGAATATATATAAATTATTTGA
Found at i:115140948 original size:102 final size:102
Alignment explanation
Indices: 115140812--115141434 Score: 521
Period size: 111 Copynumber: 5.8 Consensus size: 102
115140802 AATTCAATGG
* ** * * * * * **
115140812 CATTTCACCTGCAAG-ATCTCTTGCATCAGAGGGTGTTGGCATATT-TGACCCTTGCGTTCCAGG
1 CATTTCACCTGC-AGCATCTCTTACATCATCGGGTGTTGGAATATTCAG-CTCTTGCCTTTCTTG
115140875 CATGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
64 CATGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
115140914 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
115140979 TGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
66 TGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
* *
115141016 CATTTCATCTGCAGCATCTCTTACATCATCGGGTGCTGGAATATTCAGCTCTTGCCTTTCTTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
* * *
115141081 TGCTACGGTTCATGTTTTGATGGACTTGATCGTCGGAGCTCGATGG
66 TGCTACGGTTCGTGTTTTGAT---C--GA---T-GGAACTCGATGC
* ** * **
115141127 CATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATATTCAGCTCTTGCCTTTCTTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
* * * * *
115141192 TGCTACAGTTCATTTTTTGATGGGCTTGATCGTCGGAGCTCGATGG
66 TGCTACGGTTCGTGTTTTGAT---C--GA---T-GGAACTCGATGC
* * ** * ** *
115141238 CATTTCACCTGAAGCATCTCTTGCATCAAAGGATGTTGTCATATTCAGCTCTTGCCTTTCTTGCG
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
* * * * *
115141303 TGCTACGATTCATGTTTTGATGGACTCGATCGTCGGAGCTAGATGG
66 TGCTACGGTTCGTG-TTT--T-GA-TCGA---T-GGAACTCGATGC
* ** * *** * *
115141349 CATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTATCATATTCAGCTCTTGCCTTCCCTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
* *
115141414 TGCTACTGTTCATGTTTTGAT
66 TGCTACGGTTCGTGTTTTGAT
115141435 AAACTTGATT
Statistics
Matches: 466, Mismatches: 39, Indels: 28
0.87 0.07 0.05
Matches are distributed among these distances:
101 2 0.00
102 170 0.36
103 1 0.00
105 1 0.00
106 1 0.00
107 4 0.01
108 1 0.00
110 4 0.01
111 274 0.59
112 3 0.01
113 1 0.00
114 1 0.00
115 2 0.00
116 1 0.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (102 bp):
CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
TGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
Found at i:115141171 original size:111 final size:111
Alignment explanation
Indices: 115140995--115141542 Score: 672
Period size: 111 Copynumber: 4.9 Consensus size: 111
115140985 GGTTCGTGTT
* * * * ** * * **
115140995 TTGATCGAT-GGAACTCGATGCCATTTCATCTGCAGCATCTCTTACATCATCGGGTGCTGGAATA
1 TTGATCG-TCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATA
115141059 TTCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTGATGGAC
65 TTCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTGATGGAC
115141106 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
1 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
* * *
115141171 TCAGCTCTTGCCTTTCTTGCATGCTACAGTTCATTTTTTGATGGGC
66 TCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTGATGGAC
*
115141217 TTGATCGTCGGAGCTCGATGGCATTTCACCTGAAGCATCTCTTGCATCAAAGGATGTTGTCATAT
1 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
* *
115141282 TCAGCTCTTGCCTTTCTTGCGTGCTACGATTCATGTTTTGATGGAC
66 TCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTGATGGAC
* * *
115141328 TCGATCGTCGGAGCTAGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTATCATAT
1 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
* * * **
115141393 TCAGCTCTTGCCTTCCCTGCATGCTACTGTTCATGTTTTGATAAAC
66 TCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTGATGGAC
* * * * * * * * *
115141439 TTGATTTGT-GGAACTCAATGGCCA-TACACCTACAGCATGTCTTGCATAAAAGGGTCTCTGT-A
1 TTGA-TCGTCGGAGCTCGATGG-CATTTCACCTGCAGCATCTCTTGCATCAAAGGATGT-TGTCA
* * * * * * *
115141501 TATTCGGTTCTTGCCATCCCTGCATGCTTCGGCTCATGTTTT
63 TATTCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTT
115141543 CGTAAACTTG
Statistics
Matches: 385, Mismatches: 48, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
110 1 0.00
111 377 0.98
112 7 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (111 bp):
TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
TCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTGATGGAC
Found at i:115141322 original size:222 final size:213
Alignment explanation
Indices: 115140893--115141434 Score: 717
Period size: 222 Copynumber: 2.5 Consensus size: 213
115140883 GGTTCGTGTT
* * * ** * **
115140893 TTGATCGAT-GGAACTCGATGCCATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATA
1 TTGATCG-TCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATA
* *
115140957 TTCAGCTCTTGCCTTTCTTGCATGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGCCATTTC
65 TTCAGCTCTTGCCTTTCTTGCATGCTACAGTTCATGTTTTGATCGATGGAACTCGATGCCATTTC
* * ** *
115141022 ATCTGCAGCATCTCTTACATCATCGGGTGCTGGAATATTCAGCTCTTGCCTTTCTTGCATGCTAC
130 ACCTGAAGCATCTCTTACATCAAAGGATGCTGGAATATTCAGCTCTTGCCTTTCTTGCATGCTAC
*
115141087 GGTTCATGTTTTGATGGAC
195 GATTCATGTTTTGATGGAC
115141106 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
1 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
* *
115141171 TCAGCTCTTGCCTTTCTTGCATGCTACAGTTCATTTTTTGATGGGCTTGATCGTCGGAGCTCGAT
66 TCAGCTCTTGCCTTTCTTGCATGCTACAGTTCATGTTTTGAT---C--GA---T-GGAACTCGAT
* * * **
115141236 GGCATTTCACCTGAAGCATCTCTTGCATCAAAGGATGTTGTCATATTCAGCTCTTGCCTTTCTTG
122 GCCATTTCACCTGAAGCATCTCTTACATCAAAGGATGCTGGAATATTCAGCTCTTGCCTTTCTTG
*
115141301 CGTGCTACGATTCATGTTTTGATGGAC
187 CATGCTACGATTCATGTTTTGATGGAC
* * *
115141328 TCGATCGTCGGAGCTAGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTATCATAT
1 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
* * *
115141393 TCAGCTCTTGCCTTCCCTGCATGCTACTGTTCATGTTTTGAT
66 TCAGCTCTTGCCTTTCTTGCATGCTACAGTTCATGTTTTGAT
115141435 AAACTTGATT
Statistics
Matches: 288, Mismatches: 31, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
212 1 0.00
213 94 0.33
216 1 0.00
218 2 0.01
221 1 0.00
222 189 0.66
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (213 bp):
TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
TCAGCTCTTGCCTTTCTTGCATGCTACAGTTCATGTTTTGATCGATGGAACTCGATGCCATTTCA
CCTGAAGCATCTCTTACATCAAAGGATGCTGGAATATTCAGCTCTTGCCTTTCTTGCATGCTACG
ATTCATGTTTTGATGGAC
Found at i:115141527 original size:333 final size:324
Alignment explanation
Indices: 115140893--115141528 Score: 740
Period size: 333 Copynumber: 1.9 Consensus size: 324
115140883 GGTTCGTGTT
* ** *
115140893 TTGATCGATGGAACTCGATGCCATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATAT
1 TTGATCGATGGAACTCGATGCCATTTCACCTGAAGCATCTCTTACATCAAAGGATGTTGGAATAT
* * *
115140958 TCAGCTCTTGCCTTTCTTGCATGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGCCATTTCA
66 TCAGCTCTTGCCTTTCTTGCATGCTACGATTCATGTTTTGATCGATGGAACTAGATGCCATTTCA
* ** * * * *
115141023 TCTGCAGCATCTCTTACATCATCGGGTGCTGGAATATTCAGCTCTTGCCTTTCTTGCATGCTACG
131 CCTGCAGCATCTCTTACATCAAAGGATGCTAGAATATTCAGCTCTTGCCTTCCCTGCATGCTACG
** * * * *
115141088 GTTCATGTTTTGATGGACTTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCAT
196 GTTCATGTTTTGATAAACTTGATCGTCGGAACTCAATGGCATTACACCTACAGCATCTCTTGCAT
* * * * *
115141153 CAAAGGATGTTGTCATATTCAGCTCTTGCCTTTCTTGCATGCTACAGTTCATTTTTTGATGGGC
261 AAAAGGATCTTGTCATATTCAGCTCTTGCCATCCCTGCATGCTACAGTTCATTTTTTGATGGGC
* * * **
115141217 TTGATCG-TCGGAGCTCGATGGCATTTCACCTGAAGCATCTCTTGCATCAAAGGATGTTGTCATA
1 TTGATCGAT-GGAACTCGATGCCATTTCACCTGAAGCATCTCTTACATCAAAGGATGTTGGAATA
* *
115141281 TTCAGCTCTTGCCTTTCTTGCGTGCTACGATTCATGTTTTGATGGACTCGATCGTCGGAGCTAGA
65 TTCAGCTCTTGCCTTTCTTGCATGCTACGATTCATG-TTT--T-GA-TCGA---T-GGAACTAGA
* * * **
115141346 TGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTATCATATTCAGCTCTTGCCTTCCCT
121 TGCCATTTCACCTGCAGCATCTCTTACATCAAAGGATGCTAGAATATTCAGCTCTTGCCTTCCCT
* *
115141411 GCATGCTACTGTTCATGTTTTGATAAACTTGATTTGT-GGAACTCAATGGCCA-TACACCTACAG
186 GCATGCTACGGTTCATGTTTTGATAAACTTGA-TCGTCGGAACTCAATGG-CATTACACCTACAG
* * * *
115141474 CATGTCTTGCATAAAAGGGTCTCTGT-ATATTCGGTTCTTGCCATCCCTGCATGCT
249 CATCTCTTGCATAAAAGGATCT-TGTCATATTCAGCTCTTGCCATCCCTGCATGCT
115141529 TCGGCTCATG
Statistics
Matches: 256, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
323 1 0.00
324 86 0.34
325 3 0.01
327 1 0.00
328 2 0.01
329 4 0.02
332 1 0.00
333 150 0.59
334 8 0.03
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (324 bp):
TTGATCGATGGAACTCGATGCCATTTCACCTGAAGCATCTCTTACATCAAAGGATGTTGGAATAT
TCAGCTCTTGCCTTTCTTGCATGCTACGATTCATGTTTTGATCGATGGAACTAGATGCCATTTCA
CCTGCAGCATCTCTTACATCAAAGGATGCTAGAATATTCAGCTCTTGCCTTCCCTGCATGCTACG
GTTCATGTTTTGATAAACTTGATCGTCGGAACTCAATGGCATTACACCTACAGCATCTCTTGCAT
AAAAGGATCTTGTCATATTCAGCTCTTGCCATCCCTGCATGCTACAGTTCATTTTTTGATGGGC
Found at i:115141549 original size:111 final size:110
Alignment explanation
Indices: 115141354--115141626 Score: 314
Period size: 111 Copynumber: 2.5 Consensus size: 110
115141344 GATGGCATTT
* * * * * * *
115141354 CACCTGCAGCATCTCTTGCATCAAAGGATGTTATCATATTCAGCTCTTGCCTTCCCTGCATGCTA
1 CACCTACAGCATCTCTTGCATAAAAGGGTCTTGT-ATATTCGGCTCTTGCCATCCCTGCATGCTA
* * ** **
115141419 CTGTTCATGTTTTGATAAACTTGATTTGTGGAACTCAATGGCCATA
65 CGGCTCATGTTTTGATAAACTTGATTAATGGAAAACAATGGCCATA
* * *
115141465 CACCTACAGCATGTCTTGCATAAAAGGGTCTCTGTATATTCGGTTCTTGCCATCCCTGCATGCTT
1 CACCTACAGCATCTCTTGCATAAAAGGGTCT-TGTATATTCGGCTCTTGCCATCCCTGCATGCTA
**
115141530 CGGCTCATGTTTTCG-TAAACTTGATTAATGGAAAACAATGGCTGTA
65 CGGCTCATGTTTT-GATAAACTTGATTAATGGAAAACAATGGCCATA
* * *
115141576 CACCTACAGCACCTCTTCCATAAAAGGGTCTTTGAATATTCGGCTCTTGCC
1 CACCTACAGCATCTCTTGCATAAAAGGGTC-TTGTATATTCGGCTCTTGCC
115141627 TATATACTTG
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
111 132 0.97
112 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (110 bp):
CACCTACAGCATCTCTTGCATAAAAGGGTCTTGTATATTCGGCTCTTGCCATCCCTGCATGCTAC
GGCTCATGTTTTGATAAACTTGATTAATGGAAAACAATGGCCATA
Found at i:115143116 original size:15 final size:15
Alignment explanation
Indices: 115143092--115143122 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
115143082 AAACAATGTA
115143092 TGTTTATTTATTATT
1 TGTTTATTTATTATT
*
115143107 TGTTTGTTTATTATT
1 TGTTTATTTATTATT
115143122 T
1 T
115143123 ATTAATATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (15 bp):
TGTTTATTTATTATT
Found at i:115143164 original size:24 final size:22
Alignment explanation
Indices: 115143124--115143170 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
115143114 TTATTATTTA
*
115143124 TTAATATTGTTCGTGAACATGT
1 TTAATATTGTTCATGAACATGT
115143146 TTAATTATATGTTCATGAACATGT
1 TTAA-TAT-TGTTCATGAACATGT
115143170 T
1 T
115143171 CGTAAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 3 0.14
24 15 0.68
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.47
Consensus pattern (22 bp):
TTAATATTGTTCATGAACATGT
Found at i:115143179 original size:24 final size:22
Alignment explanation
Indices: 115143126--115143179 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 22
115143116 ATTATTTATT
*
115143126 AATATTGTTCGTGAACATGTTTA
1 AATA-TGTTCATGAACATGTTTA
115143149 ATTATATGTTCATGAACATGTTCGTA
1 A--ATATGTTCATGAACATGTT--TA
115143175 AATAT
1 AATAT
115143180 TAAACAAACG
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
23 1 0.04
24 19 0.73
25 3 0.12
26 3 0.12
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (22 bp):
AATATGTTCATGAACATGTTTA
Found at i:115143670 original size:12 final size:12
Alignment explanation
Indices: 115143653--115143679 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
115143643 AAATGTCTTT
115143653 AAAATAATAATA
1 AAAATAATAATA
115143665 AAAATAATAATA
1 AAAATAATAATA
115143677 AAA
1 AAA
115143680 TAAAAGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAATAATAATA
Found at i:115144878 original size:22 final size:22
Alignment explanation
Indices: 115144853--115144895 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
115144843 GAATCAACTA
*
115144853 TTTTGCTACCATTTCGTTATTG
1 TTTTGCTACAATTTCGTTATTG
*
115144875 TTTTGCTGCAATTTCGTTATT
1 TTTTGCTACAATTTCGTTATT
115144896 ATATTATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.56
Consensus pattern (22 bp):
TTTTGCTACAATTTCGTTATTG
Found at i:115146519 original size:30 final size:30
Alignment explanation
Indices: 115146485--115146547 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
115146475 ACTTATTTTA
115146485 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
115146515 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
115146545 TTG
1 TTG
115146548 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:115146686 original size:11 final size:11
Alignment explanation
Indices: 115146670--115146700 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
115146660 ATATATATTT
115146670 TAAAAATTATA
1 TAAAAATTATA
*
115146681 TAAAAATAATA
1 TAAAAATTATA
115146692 TAAAAATTA
1 TAAAAATTA
115146701 ATATGAGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:115146697 original size:12 final size:11
Alignment explanation
Indices: 115146670--115146704 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
115146660 ATATATATTT
*
115146670 TAAAAATTATA
1 TAAAAATAATA
115146681 TAAAAATAATA
1 TAAAAATAATA
115146692 TAAAAATTAATA
1 TAAAAA-TAATA
115146704 T
1 T
115146705 GAGCAGGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:115149987 original size:30 final size:30
Alignment explanation
Indices: 115149941--115150057 Score: 198
Period size: 30 Copynumber: 3.9 Consensus size: 30
115149931 TTTTATTATG
*
115149941 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
115149972 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
115150002 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
115150032 CTATTATTTGATACCCATATCTTTGA
1 CCAATATTTGATACCCATATCTTTGA
115150058 TTTTTCATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
30 76 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:115149996 original size:15 final size:15
Alignment explanation
Indices: 115149951--115150058 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
115149941 CCAATATCTC
115149951 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
115149966 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
115149981 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
115149996 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
115150011 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
115150026 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
115150041 GATACCCATATCTTT
1 GATACCCATATCTTT
115150056 GAT
1 GAT
115150059 TTTTCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:115154678 original size:30 final size:30
Alignment explanation
Indices: 115154632--115154755 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
115154622 TTTTATTATG
*
115154632 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
115154663 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
115154693 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
115154723 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
115154753 CCA
1 CCA
115154756 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:115154687 original size:15 final size:15
Alignment explanation
Indices: 115154642--115154749 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
115154632 CCAATATCTC
115154642 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
115154657 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
115154672 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
115154687 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
115154702 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
115154717 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
115154732 GATACCCATATCTTT
1 GATACCCATATCTTT
115154747 GAT
1 GAT
115154750 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:115163378 original size:15 final size:15
Alignment explanation
Indices: 115163358--115163387 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
115163348 TTTAATCCTT
*
115163358 TATAAATTATAAAAA
1 TATAAACTATAAAAA
115163373 TATAAACTATAAAAA
1 TATAAACTATAAAAA
115163388 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:115163825 original size:20 final size:20
Alignment explanation
Indices: 115163800--115163838 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
115163790 TTTTTCTCCA
115163800 TCTGTTTTCCTACATTTTCT
1 TCTGTTTTCCTACATTTTCT
*
115163820 TCTGTTTTCTTACATTTTC
1 TCTGTTTTCCTACATTTTC
115163839 CATTTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.23, G:0.05, T:0.62
Consensus pattern (20 bp):
TCTGTTTTCCTACATTTTCT
Found at i:115164546 original size:26 final size:28
Alignment explanation
Indices: 115164503--115164555 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
115164493 ATAACAATCC
* *
115164503 ATTTTTGTTTAAT-TTTTTATGAATTTT
1 ATTTTTGTTGAATATTTTTATAAATTTT
115164530 ATTTTT-TTGAATATTTTTATAAATTT
1 ATTTTTGTTGAATATTTTTATAAATTT
115164556 CAAATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (28 bp):
ATTTTTGTTGAATATTTTTATAAATTTT
Found at i:115165124 original size:15 final size:15
Alignment explanation
Indices: 115165104--115165133 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
115165094 TTTAATCCTT
*
115165104 TATAAATTATAAAAA
1 TATAAACTATAAAAA
115165119 TATAAACTATAAAAA
1 TATAAACTATAAAAA
115165134 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:115165401 original size:29 final size:29
Alignment explanation
Indices: 115165355--115165413 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 29
115165345 TAATATAATT
115165355 TTTTAAAAAAAAATTTAAAATCAT-TAAAA
1 TTTTAAAAAAAAATTTAAAAT-ATATAAAA
115165384 TTTTAAAAACAAAA-TTAAAATATATAAAA
1 TTTTAAAAA-AAAATTTAAAATATATAAAA
115165413 T
1 T
115165414 ATTTTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 2 0.07
29 22 0.79
30 4 0.14
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (29 bp):
TTTTAAAAAAAAATTTAAAATATATAAAA
Found at i:115180756 original size:11 final size:11
Alignment explanation
Indices: 115180742--115180775 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
115180732 CGAAACAGGG
115180742 GAGAAAGAAAA
1 GAGAAAGAAAA
115180753 GAGAAAGAAAA
1 GAGAAAGAAAA
*
115180764 GAAAAAGGAAAA
1 GAGAAA-GAAAA
115180776 TTAGAGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
GAGAAAGAAAA
Found at i:115183694 original size:13 final size:14
Alignment explanation
Indices: 115183678--115183713 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
115183668 CAATCTCATA
115183678 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
115183691 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
115183704 TCTC-ATTTCA
1 TCTCAATTTCA
115183714 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:115183703 original size:18 final size:19
Alignment explanation
Indices: 115183665--115183705 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
115183655 TGGTTCATGT
115183665 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
115183684 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
115183702 TTTC
1 TTTC
115183706 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:115183919 original size:23 final size:22
Alignment explanation
Indices: 115183881--115183941 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
115183871 GACACATAAA
*
115183881 GTGCCT-AAAACGACACACGAG
1 GTGCCTGAATACGACACACGAG
115183902 GTGCCTG-ATACGACACACGAG
1 GTGCCTGAATACGACACACGAG
115183923 GTGCCTGAAATACGACACA
1 GTGCCTG-AATACGACACA
115183942 TAAAGTGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 26 0.72
23 10 0.28
ACGTcount: A:0.34, C:0.28, G:0.25, T:0.13
Consensus pattern (22 bp):
GTGCCTGAATACGACACACGAG
Found at i:115183949 original size:23 final size:23
Alignment explanation
Indices: 115183871--115183951 Score: 80
Period size: 21 Copynumber: 3.7 Consensus size: 23
115183861 ATCAGTATAT
*
115183871 GACACATAAAGTGCCT-AAA-AC
1 GACACACAAAGTGCCTGAAATAC
* *
115183892 GACACACGAGGTGCCTG--ATAC
1 GACACACAAAGTGCCTGAAATAC
* *
115183913 GACACACGAGGTGCCTGAAATAC
1 GACACACAAAGTGCCTGAAATAC
*
115183936 GACACATAAAGTGCCT
1 GACACACAAAGTGCCT
115183952 AATCGGTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.64
23 17 0.34
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (23 bp):
GACACACAAAGTGCCTGAAATAC
Found at i:115184265 original size:15 final size:15
Alignment explanation
Indices: 115184240--115184293 Score: 81
Period size: 15 Copynumber: 3.5 Consensus size: 15
115184230 TCATATATAT
115184240 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
115184256 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
115184271 AATAATTTCAATCAA
1 TATAAATTCAATCAA
115184286 TATAAATT
1 TATAAATT
115184294 TATCACACAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:115185242 original size:13 final size:13
Alignment explanation
Indices: 115185224--115185251 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
115185214 CCTCTTTTTA
115185224 TTCTTTTGTTTCT
1 TTCTTTTGTTTCT
115185237 TTCTTTTGTTTCT
1 TTCTTTTGTTTCT
115185250 TT
1 TT
115185252 TATATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.79
Consensus pattern (13 bp):
TTCTTTTGTTTCT
Found at i:115185249 original size:22 final size:25
Alignment explanation
Indices: 115185205--115185252 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
115185195 CCTGCTACTC
*
115185205 TGTTTCTTTCCTCTTTTTATTCTTT
1 TGTTTCTTTCCTCTTTGTATTCTTT
115185230 TGTTTCTTT-CT-TTTGT-TTCTTT
1 TGTTTCTTTCCTCTTTGTATTCTTT
115185252 T
1 T
115185253 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 4 0.18
24 2 0.09
25 9 0.41
ACGTcount: A:0.02, C:0.17, G:0.06, T:0.75
Consensus pattern (25 bp):
TGTTTCTTTCCTCTTTGTATTCTTT
Found at i:115189112 original size:5 final size:5
Alignment explanation
Indices: 115189102--115189135 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
115189092 TTGTTTGTTC
115189102 TTTAT TTTAT TTTATT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTT
115189136 TCACAAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:115189123 original size:16 final size:16
Alignment explanation
Indices: 115189102--115189136 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
115189092 TTGTTTGTTC
115189102 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
115189118 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
115189134 TTT
1 TTT
115189137 CACAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:115197824 original size:85 final size:89
Alignment explanation
Indices: 115197730--115197904 Score: 313
Period size: 85 Copynumber: 2.0 Consensus size: 89
115197720 ATCAATGTCG
115197730 TCTTATTTCAAATCGAATCGATGCGTTTT-AGCTAGTTTCAC-ATTTTTTT-AAATTCTTTAAAA
1 TCTTATTTCAAATCGAATCGATGCGTTTTAAGCTAGTTTCACAATTTTTTTAAAATTCTTTAAAA
115197792 TGAAGACGATAT-TGATATTTGGC
66 TGAAGACGATATCTGATATTTGGC
115197815 TCTTATTTCAAATCGAATCGATGCGTTTTAAGCTAGTTTCACAATTTTTTTAGAAATTCTTTAAA
1 TCTTATTTCAAATCGAATCGATGCGTTTTAAGCTAGTTTCACAATTTTTTTA-AAATTCTTTAAA
115197880 ATGAAGACGATATCTGATATTTGGC
65 ATGAAGACGATATCTGATATTTGGC
115197905 AATTCGCGGA
Statistics
Matches: 85, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
85 29 0.34
86 12 0.14
87 8 0.09
89 25 0.29
90 11 0.13
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.42
Consensus pattern (89 bp):
TCTTATTTCAAATCGAATCGATGCGTTTTAAGCTAGTTTCACAATTTTTTTAAAATTCTTTAAAA
TGAAGACGATATCTGATATTTGGC
Found at i:115197918 original size:89 final size:84
Alignment explanation
Indices: 115197738--115197904 Score: 262
Period size: 89 Copynumber: 1.9 Consensus size: 84
115197728 CGTCTTATTT
115197738 CAAATCGAATCGATGCGTTTTAGCTAGTTTCACATTTTTTTAAATTCTTTAAAATGAAGACGATA
1 CAAATCGAATCGATGCGTTTTAGCTAGTTTCACATTTTTTTAAATTCTTTAAAATGAAGACGATA
* *
115197803 TTGATATTTGGCTCTTATTT
66 TTGATATTTGGC-CTAATTG
115197823 CAAATCGAATCGATGCGTTTTAAGCTAGTTTCACAATTTTTTTAGAAATTCTTTAAAATGAAGAC
1 CAAATCGAATCGATGCGTTTT-AGCTAGTTTCAC-ATTTTTTT--AAATTCTTTAAAATGAAGAC
115197888 GATATCTGATATTTGGC
62 GATAT-TGATATTTGGC
115197905 AATTCGCGGA
Statistics
Matches: 77, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
85 21 0.27
86 12 0.16
87 8 0.10
89 25 0.32
90 11 0.14
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (84 bp):
CAAATCGAATCGATGCGTTTTAGCTAGTTTCACATTTTTTTAAATTCTTTAAAATGAAGACGATA
TTGATATTTGGCCTAATTG
Found at i:115201036 original size:81 final size:79
Alignment explanation
Indices: 115200902--115201062 Score: 288
Period size: 81 Copynumber: 2.0 Consensus size: 79
115200892 GGATATATAA
115200902 AGCCTAATGCGAGGAAAGGAGGAAGGAGATGGAGAAAAAGCAAGAAAGGAGAAGAGCACATTTGG
1 AGCCTAATGCGAGGAAAGGAGGAAGGAGATGGAGAAAAAGCAAGAAAGGAGAAGAGCACATTTGG
115200967 GCGGCGATAGAAGCC
66 GCGG-GATAGAAGCC
115200982 AGCCTAATGCGAGGGAAAGGAGAGAAGGAGATGGAGAAAAAGC-AGAAAGGAGAAGAGCACATTT
1 AGCCTAATGCGA-GGAAAGGAG-GAAGGAGATGGAGAAAAAGCAAGAAAGGAGAAGAGCACATTT
115201046 GGGCGGGATAGAAGCC
64 GGGCGGGATAGAAGCC
115201062 A
1 A
115201063 ATGGGGACCG
Statistics
Matches: 79, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
80 23 0.29
81 36 0.46
82 20 0.25
ACGTcount: A:0.42, C:0.12, G:0.38, T:0.09
Consensus pattern (79 bp):
AGCCTAATGCGAGGAAAGGAGGAAGGAGATGGAGAAAAAGCAAGAAAGGAGAAGAGCACATTTGG
GCGGGATAGAAGCC
Found at i:115205968 original size:88 final size:90
Alignment explanation
Indices: 115205806--115206383 Score: 464
Period size: 88 Copynumber: 6.6 Consensus size: 90
115205796 GCCAAAGGAA
* * * * * * *
115205806 CAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATAT
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
* *
115205869 TGGTGGCGAAGTAGATCGCAGAAAG
66 TGGTAGCGAAGTAGATCGAAGAAAG
* * * * *
115205894 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATAT
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
* *
115205958 TGGTAG-GAAGTGGATCGAAG-ATG
66 TGGTAGCGAAGTAGATCGAAGAAAG
* * * * * * * *
115205981 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
* * *
115206046 TGG-CGTGAAGTAGATCGAAG-TAG
66 TGGTAGCGAAGTAGATCGAAGAAAG
* * * * * *
115206069 CAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATAT
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
* * *
115206132 TGGTGGCGAAGTAGATAGCAGAAAG
66 TGGTAGCGAAGTAGATCGAAGAAAG
* * * * * * * * *
115206157 TAAATCTTGTCTGCATGTATTGG-CGTGAAGTAAATCGAAGGTAGCAGATCCTATCTTCCTATAT
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
* * * *
115206221 TGATAG-GAAGTGGATCCAAG-ATG
66 TGGTAGCGAAGTAGATCGAAGAAAG
* * * * * *
115206244 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTAT
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
* * **
115206309 TGG-CGTGAAGTAGATCGAAGATTG
66 TGGTAGCGAAGTAGATCGAAGAAAG
* * * * *
115206333 TAGATCTTGCCTTCCTGTATTTGG-CAGCGAAGCAGATCGAAGATGGCAGAT
1 CAGATCTTGTCTTCCTATA-TTGGTC-GCGAAGTAGATCGAAGATAGCAGAT
115206384 TTTACCTCCC
Statistics
Matches: 379, Mismatches: 98, Indels: 24
0.76 0.20 0.05
Matches are distributed among these distances:
86 20 0.05
87 70 0.18
88 202 0.53
89 62 0.16
90 25 0.07
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (90 bp):
CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
TGGTAGCGAAGTAGATCGAAGAAAG
Found at i:115206273 original size:263 final size:263
Alignment explanation
Indices: 115205806--115206328 Score: 938
Period size: 263 Copynumber: 2.0 Consensus size: 263
115205796 GCCAAAGGAA
115205806 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTG
1 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTG
* * * *
115205871 GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGT
66 GTGGCGAAGTAGATAGCAGAAAGCAAATCTTGTCTGCATGTATTGGCGTGAAGTAAATCGAAGGT
* * *
115205936 AGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
131 AGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATAC
* * *
115206001 TGGTGGCGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
196 TGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAG
115206066 TAG
261 TAG
*
115206069 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
1 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTG
*
115206134 GTGGCGAAGTAGATAGCAGAAAGTAAATCTTGTCTGCATGTATTGGCGTGAAGTAAATCGAAGGT
66 GTGGCGAAGTAGATAGCAGAAAGCAAATCTTGTCTGCATGTATTGGCGTGAAGTAAATCGAAGGT
115206199 AGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATAC
131 AGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATAC
115206264 TGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAG
196 TGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAG
115206329 ATTGTAGATC
Statistics
Matches: 248, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
263 248 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (263 bp):
CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTG
GTGGCGAAGTAGATAGCAGAAAGCAAATCTTGTCTGCATGTATTGGCGTGAAGTAAATCGAAGGT
AGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATAC
TGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAG
TAG
Found at i:115206348 original size:132 final size:132
Alignment explanation
Indices: 115205806--115206328 Score: 931
Period size: 132 Copynumber: 4.0 Consensus size: 132
115205796 GCCAAAGGAA
*
115205806 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTG
1 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
115205871 GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGT
66 GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGT
115205936 AG
131 AG
115205938 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
1 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
*
115206003 GTGGCGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA-GT
66 GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGT
115206067 AG
131 AG
115206069 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
1 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
* * * * *
115206134 GTGGCGAAGTAGATAGCAGAAAGTAAATCTTGTCTGCATGTATTGGCGTGAAGTAAATCGAAGGT
66 GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGT
115206199 AG
131 AG
* * *
115206201 CAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTG
1 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
* *
115206266 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAG
66 GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
115206329 ATTGTAGATC
Statistics
Matches: 374, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
131 127 0.34
132 247 0.66
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTG
GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGT
AG
Found at i:115206478 original size:133 final size:133
Alignment explanation
Indices: 115206304--115206820 Score: 842
Period size: 133 Copynumber: 3.9 Consensus size: 133
115206294 CTTATCTTCA
* *
115206304 TGTA-TTGGC-GT-GAAGTAGATCGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
1 TGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
* *
115206366 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTTG
65 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTTG
115206431 TCCC
130 TCCC
* *
115206435 TGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
*
115206500 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGTCGATAACTCTTGT
66 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTTGT
115206565 CCC
131 CCC
115206568 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
*
115206633 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCT-TG
115206698 TCCC
130 TCCC
*
115206702 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* ** * * ** *
115206767 GGTTGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTATATTGAAGCCG
66 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCG
115206821 GTAATTCTAT
Statistics
Matches: 364, Mismatches: 18, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
131 4 0.01
132 5 0.01
133 237 0.65
134 118 0.32
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (133 bp):
TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTTGT
CCC
Found at i:115206502 original size:46 final size:46
Alignment explanation
Indices: 115205832--115206661 Score: 189
Period size: 44 Copynumber: 18.8 Consensus size: 46
115205822 ATATTGGTAG
* * * * **
115205832 GAAGTGGATCAAAGA-TGCAGATCTTGTCTTCCC-ATA-TTGGTGGC
1 GAAGTAGATCGAAGATTGCAGATCTTG-CCTCCCTGTATTTGGCAGC
* ** * * * *
115205876 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA-TTGGC-GT
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * ** * * *
115205920 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATA-TTGGTAG-
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * **
115205964 GAAGTGGATCGAAGA-TGCAGATCTTGTCTTCCC-ATA-TTGGTGGC
1 GAAGTAGATCGAAGATTGCAGATCTTG-CCTCCCTGTATTTGGCAGC
* ** * * * * *
115206008 GAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTA-TTGGC-GT
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * ** * * *
115206052 GAAGTAGATCGAAG-TAGCAGATCCTATCTTCCTATA-TTGGTAG-
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * **
115206095 GAAGTGGATCGAAGA-TGCAGATCTTGTCTTCCC-ATA-TTGGTGGC
1 GAAGTAGATCGAAGATTGCAGATCTTG-CCTCCCTGTATTTGGCAGC
* * ** * * * * * *
115206139 GAAGTAGATAGCAGAAAGTAAATCTTGTCTGCATGTA-TTGGC-GT
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * * ** * * **
115206183 GAAGTAAATCGAAGGTAGCAGATCCTATCTTCCTATA-TTGATAG-
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * * * **
115206227 GAAGTGGATCCAAGA-TGCAGATCTTGTCTTCCC-ATA-CTGGTGGC
1 GAAGTAGATCGAAGATTGCAGATCTTG-CCTCCCTGTATTTGGCAGC
** ** * * *
115206271 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA-TTGGC-GT
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* *
115206315 GAAGTAGATCGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGC
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * * * * *
115206361 GAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGT
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * ** * *
115206404 GGAGTACATTGAAG-CCG-ATAACTCTTG--TCCCTGTATTTGGCAGTG
1 GAAGTAGATCGAAGATTGCA-GA-TCTTGCCTCCCTGTATTTGGCAG-C
* * *
115206449 GAA-TAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGC
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * * *** *
115206494 GAAGTAGATCAAAGATGGCAGATTTTACCTCCCTG-A--CCACAGT
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * * * *
115206537 GGAGTACATTGAAG-TCG-ATAACTCTTG--TCCCTGTATTTGGCAGTG
1 GAAGTAGATCGAAGATTGCA-GA-TCTTGCCTCCCTGTATTTGGCAG-C
* *
115206582 GAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
* * * * *
115206627 GAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG
1 GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTG
115206662 ACCACAGTGG
Statistics
Matches: 566, Mismatches: 178, Indels: 82
0.69 0.22 0.10
Matches are distributed among these distances:
41 14 0.02
42 7 0.01
43 115 0.20
44 237 0.42
45 83 0.15
46 110 0.19
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (46 bp):
GAAGTAGATCGAAGATTGCAGATCTTGCCTCCCTGTATTTGGCAGC
Found at i:115206759 original size:46 final size:46
Alignment explanation
Indices: 115206431--115206759 Score: 200
Period size: 46 Copynumber: 7.3 Consensus size: 46
115206421 ATAACTCTTG
*
115206431 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCC
1 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
* * ** * * *
115206477 TTCCTGTATTTGGCAG-CGAAGTAGATCAAAGATGGCAGATTTTACC
1 TCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
*** * * * *
115206523 TCCCTG-A--CCACAGTGGAGTACATTGAAG-TCG-ATAACTCTTG--
1 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCTTGCC
115206564 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
1 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
* * * ** * * *
115206610 TTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACC
1 TCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
*** * * ** * * **
115206656 TCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTATC
1 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGCC
115206698 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
1 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
*
115206744 TTCCTGTATTTGGCAG
1 TCCCTGTATTTGGCAG
115206760 CAAAGCAGGT
Statistics
Matches: 200, Mismatches: 64, Indels: 38
0.66 0.21 0.13
Matches are distributed among these distances:
41 10 0.05
42 14 0.07
43 23 0.12
44 25 0.12
45 27 0.14
46 97 0.49
47 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC
Found at i:115207783 original size:11 final size:13
Alignment explanation
Indices: 115207759--115207787 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
115207749 ATGTTTATAT
115207759 AAAAAGAGTAAAA
1 AAAAAGAGTAAAA
115207772 AAAAAG-GTAAAA
1 AAAAAGAGTAAAA
115207784 AAAA
1 AAAA
115207788 TTACCTGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (13 bp):
AAAAAGAGTAAAA
Done.