Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 37 of 349
Found at i:10501311 original size:9 final size:8
Alignment explanation
Indices: 10501289--10501313 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
10501279 AGTAAATATT
10501289 AATTTTTA
1 AATTTTTA
10501297 AATTTTTA
1 AATTTTTA
10501305 AATTTTTA
1 AATTTTTA
10501313 A
1 A
10501314 TCTTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
AATTTTTA
Found at i:10501441 original size:27 final size:27
Alignment explanation
Indices: 10501380--10501441 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
10501370 TGATAATTTG
* * *
10501380 AATATTTTAAAAAACATAATTTATTTC
1 AATATTTTAAAAAACAAAATTGACTTC
* *
10501407 AATTTTTTAATAAAATAAAATTGACTT-
1 AATATTTTAA-AAAACAAAATTGACTTC
10501434 AATATTTT
1 AATATTTT
10501442 CTACATTAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (27 bp):
AATATTTTAAAAAACAAAATTGACTTC
Found at i:10508495 original size:19 final size:19
Alignment explanation
Indices: 10508473--10508510 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10508463 GTTTCATCGC
10508473 GGGCC-ATTTGCATTCTTTT
1 GGGCCAATTTGC-TTCTTTT
*
10508492 GGGCCAATTTTCTTCTTTT
1 GGGCCAATTTGCTTCTTTT
10508511 ATTTTCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.11, C:0.21, G:0.18, T:0.50
Consensus pattern (19 bp):
GGGCCAATTTGCTTCTTTT
Found at i:10520655 original size:46 final size:46
Alignment explanation
Indices: 10520595--10520914 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
10520585 TTTGACATGA
* * * ** * *
10520595 TGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
10520641 TGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10520687 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10520733 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
10520779 TGCCATGATGTCTTTCAACGATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10520825 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10520871 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
10520915 AGAGCACACT
Statistics
Matches: 256, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 252 0.98
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:10525268 original size:22 final size:22
Alignment explanation
Indices: 10525243--10525288 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10525233 TAGTCCAACT
*
10525243 ATGGTTTTACACAT-ATAATGCC
1 ATGGTCTTACA-ATCATAATGCC
*
10525265 ATGGTCTTACATTCATAATGCC
1 ATGGTCTTACAATCATAATGCC
10525287 AT
1 AT
10525289 AACCAGGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (22 bp):
ATGGTCTTACAATCATAATGCC
Found at i:10525720 original size:76 final size:75
Alignment explanation
Indices: 10525581--10525758 Score: 198
Period size: 76 Copynumber: 2.4 Consensus size: 75
10525571 AAAGGGTTGC
* * * *
10525581 GCCCAGCGCTAGTCGGATGAACCGACGGTAATGAATGTGAGCCCAGTTCTGGTAGGATAAACCAA
1 GCCCAGCGCTAGTCGGATAAACCGACGATAATGAATGTAAGCCCAGTTCTAGTAGGATAAACCAA
10525646 CAAT-ATTAT
66 CAATGATTAT
* * * * *
10525655 GCACCCAGTGCTAGTCGGATAAACCGACGAT-ATTAATTGTAAGCCTAGTTCTAGTTGGATGAAC
1 G--CCCAGCGCTAGTCGGATAAACCGACGATAATGAA-TGTAAGCCCAGTTCTAGTAGGATAAAC
** *
10525719 CAACGGTGATTGT
63 CAACAATGATTAT
*
10525732 GCCCAGCGCTAGTCGGATAAACTGACG
1 GCCCAGCGCTAGTCGGATAAACCGACG
10525759 GTTGTGTGCA
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
74 1 0.01
75 28 0.33
76 52 0.60
77 5 0.06
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (75 bp):
GCCCAGCGCTAGTCGGATAAACCGACGATAATGAATGTAAGCCCAGTTCTAGTAGGATAAACCAA
CAATGATTAT
Found at i:10533141 original size:13 final size:13
Alignment explanation
Indices: 10533123--10533148 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10533113 AAGTAATCGA
10533123 ACACGGGCGTGTC
1 ACACGGGCGTGTC
10533136 ACACGGGCGTGTC
1 ACACGGGCGTGTC
10533149 CCTGCCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:10537496 original size:17 final size:17
Alignment explanation
Indices: 10537476--10537513 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
10537466 ATTTCTTTTA
10537476 TTTTTAAGATTCATTCG
1 TTTTTAAGATTCATTCG
*
10537493 TTTTTAAGATTCATTTG
1 TTTTTAAGATTCATTCG
10537510 TTTT
1 TTTT
10537514 CTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.61
Consensus pattern (17 bp):
TTTTTAAGATTCATTCG
Found at i:10549233 original size:12 final size:13
Alignment explanation
Indices: 10549208--10549236 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10549198 AAAAAGGGAA
10549208 AAAAATTAGTAAT
1 AAAAATTAGTAAT
10549221 AAAAATTAG-AAT
1 AAAAATTAGTAAT
10549233 AAAA
1 AAAA
10549237 TTTAAATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (13 bp):
AAAAATTAGTAAT
Found at i:10560830 original size:15 final size:15
Alignment explanation
Indices: 10560810--10560838 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10560800 TATGCATGTA
10560810 AAATATAAAAGACAG
1 AAATATAAAAGACAG
10560825 AAATATAAAAGACA
1 AAATATAAAAGACA
10560839 TAACAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.07, G:0.10, T:0.14
Consensus pattern (15 bp):
AAATATAAAAGACAG
Found at i:10562539 original size:22 final size:22
Alignment explanation
Indices: 10562500--10562542 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10562490 AGCAAAATAA
*
10562500 TAGCGAAATGATAATAAAACAG
1 TAGCGAAATGACAATAAAACAG
* *
10562522 TAGCGAAATGGCAGTAAAACA
1 TAGCGAAATGACAATAAAACA
10562543 ACAACAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.12, G:0.21, T:0.16
Consensus pattern (22 bp):
TAGCGAAATGACAATAAAACAG
Found at i:10567728 original size:13 final size:13
Alignment explanation
Indices: 10567710--10567734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10567700 TTTAGATTTT
10567710 TTTTAAAATTATA
1 TTTTAAAATTATA
10567723 TTTTAAAATTAT
1 TTTTAAAATTAT
10567735 TAATAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTAAAATTATA
Found at i:10567765 original size:19 final size:20
Alignment explanation
Indices: 10567741--10567779 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10567731 TTATTAATAA
*
10567741 TATAAAT-TTTTAGAATTTT
1 TATAAATATTTTAAAATTTT
10567760 TATAAATATTTTAAAATTTT
1 TATAAATATTTTAAAATTTT
10567780 AAAATTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TATAAATATTTTAAAATTTT
Found at i:10567776 original size:10 final size:9
Alignment explanation
Indices: 10567744--10567785 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
10567734 TTAATAATAT
10567744 AAATTTTTA
1 AAATTTTTA
*
10567753 GAATTTTTA
1 AAATTTTTA
10567762 TAAATATTTTA
1 -AAAT-TTTTA
10567773 AAA-TTTTA
1 AAATTTTTA
10567781 AAATT
1 AAATT
10567786 AGTTTGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 8 0.29
9 9 0.32
10 6 0.21
11 5 0.18
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (9 bp):
AAATTTTTA
Found at i:10567780 original size:19 final size:19
Alignment explanation
Indices: 10567741--10567785 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
10567731 TTATTAATAA
*
10567741 TATAAATTTTTAGAATTTT
1 TATAAATTTTTAGAAATTT
10567760 TATAAATATTTTA-AAATTT
1 TATAAAT-TTTTAGAAATTT
10567779 TA-AAATT
1 TATAAATT
10567786 AGTTTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 4 0.17
19 14 0.58
20 5 0.21
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TATAAATTTTTAGAAATTT
Found at i:10572861 original size:12 final size:12
Alignment explanation
Indices: 10572844--10572868 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10572834 CCTACCTATA
10572844 CTACTCTTTAAG
1 CTACTCTTTAAG
10572856 CTACTCTTTAAG
1 CTACTCTTTAAG
10572868 C
1 C
10572869 CATAGCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.40
Consensus pattern (12 bp):
CTACTCTTTAAG
Found at i:10586716 original size:47 final size:47
Alignment explanation
Indices: 10586607--10586718 Score: 129
Period size: 47 Copynumber: 2.4 Consensus size: 47
10586597 CCGGGATAAG
*
10586607 CACATAGTGCTTCATCAAAACAAATCCAGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCAAAACAAATCCAGAACTTTAACAGTATAGTA
* * ** * *
10586654 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCAAAACAAATCCAGAACTTTAACAGTA-TAGTA
10586701 CACATAGTG-TCTCATCAA
1 CACATAGTGCT-TCATCAA
10586719 CTCAATGTCG
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
46 1 0.02
47 49 0.94
48 2 0.04
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCAAAACAAATCCAGAACTTTAACAGTATAGTA
Found at i:10587488 original size:4 final size:4
Alignment explanation
Indices: 10587479--10587511 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
10587469 CCCTTTTCTA
10587479 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
10587512 CACGTTTGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:10591279 original size:7 final size:7
Alignment explanation
Indices: 10591263--10591291 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
10591253 TAATAACGAA
10591263 TTTC-TT
1 TTTCTTT
10591269 TTTCTTT
1 TTTCTTT
10591276 TTTCTTT
1 TTTCTTT
10591283 TTTCTTT
1 TTTCTTT
10591290 TT
1 TT
10591292 AAAGTTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTCTTT
Found at i:10594009 original size:6 final size:6
Alignment explanation
Indices: 10593998--10594023 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10593988 TTTTACTGTC
10593998 ATACAT ATACAT ATACAT ATACAT AT
1 ATACAT ATACAT ATACAT ATACAT AT
10594024 GATTTAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATACAT
Found at i:10597770 original size:7 final size:7
Alignment explanation
Indices: 10597758--10597784 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10597748 AGAAAGAGAA
10597758 AAAAAAG
1 AAAAAAG
10597765 AAAAAAG
1 AAAAAAG
10597772 AAAAAAG
1 AAAAAAG
10597779 AAAAAA
1 AAAAAA
10597785 CTAAAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:10597784 original size:16 final size:17
Alignment explanation
Indices: 10597744--10597777 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
10597734 GAGGAGAAGG
*
10597744 AAAGAGAAAGAGAAAAA
1 AAAGAGAAAAAGAAAAA
10597761 AAAGA-AAAAAGAAAAA
1 AAAGAGAAAAAGAAAAA
10597777 A
1 A
10597778 GAAAAAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAGAGAAAAAGAAAAA
Found at i:10597790 original size:14 final size:14
Alignment explanation
Indices: 10597758--10597792 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
10597748 AGAAAGAGAA
*
10597758 AAAAAAGAAAAAAG
1 AAAAAAGAAAAAAC
10597772 AAAAAAGAAAAAAC
1 AAAAAAGAAAAAAC
10597786 TAAAAAA
1 -AAAAAA
10597793 CATTTGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.86, C:0.03, G:0.09, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAAAAC
Found at i:10599459 original size:20 final size:20
Alignment explanation
Indices: 10599430--10599473 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
10599420 ACATAGTAAG
*
10599430 TTGATTAGTGATAAGGTATA
1 TTGATCAGTGATAAGGTATA
* *
10599450 TTGATCAGTGATATGGTATG
1 TTGATCAGTGATAAGGTATA
10599470 TTGA
1 TTGA
10599474 CTAAGTTGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.27, T:0.41
Consensus pattern (20 bp):
TTGATCAGTGATAAGGTATA
Found at i:10606614 original size:16 final size:17
Alignment explanation
Indices: 10606589--10606638 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
10606579 TTTTCTTACT
10606589 TTAT-TAAATTATTATA
1 TTATATAAATTATTATA
*
10606605 TTATAT-AATTATTATT
1 TTATATAAATTATTATA
* *
10606621 TTATTTAAATTATAATA
1 TTATATAAATTATTATA
10606638 T
1 T
10606639 GAACTATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATATAAATTATTATA
Found at i:10606827 original size:15 final size:15
Alignment explanation
Indices: 10606781--10606832 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
10606771 AAAAAGATAT
10606781 TATTA-TTATTATTA
1 TATTAGTTATTATTA
* *
10606795 TTATTAAGATATAAATTA
1 -TATT-AGTTAT-TATTA
10606813 TATTAGTTATTATTA
1 TATTAGTTATTATTA
10606828 TATTA
1 TATTA
10606833 TGAAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
15 13 0.43
16 6 0.20
17 7 0.23
18 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (15 bp):
TATTAGTTATTATTA
Found at i:10606967 original size:31 final size:32
Alignment explanation
Indices: 10606910--10606970 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
10606900 ACATTTGCAT
10606910 TATTTATGTATAATTAGTGAAAAGATATTTTA
1 TATTTATGTATAATTAGTGAAAAGATATTTTA
10606942 TATTTAT-TATTAATTAGT-AAAAGATATTT
1 TATTTATGTA-TAATTAGTGAAAAGATATTT
10606971 ATTAGATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (32 bp):
TATTTATGTATAATTAGTGAAAAGATATTTTA
Found at i:10606984 original size:32 final size:31
Alignment explanation
Indices: 10606920--10606994 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
10606910 TATTTATGTA
* *
10606920 TAATTAGTGAAAAGATATTTTATATTTATTAT
1 TAATTAGT-AAAAGATATTTTAGATGTATTAT
10606952 TAATTAGTAAAAGATATTTATTAGATGT-TTAT
1 TAATTAGTAAAAGATA-TT-TTAGATGTATTAT
*
10606984 T-ATTATTAAAA
1 TAATTAGTAAAA
10606995 TTATTAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
31 17 0.45
32 15 0.39
33 6 0.16
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (31 bp):
TAATTAGTAAAAGATATTTTAGATGTATTAT
Found at i:10607256 original size:13 final size:14
Alignment explanation
Indices: 10607223--10607256 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
10607213 GAAACAGGGG
10607223 AAGAAAAAGAAAGA
1 AAGAAAAAGAAAGA
10607237 AAG-AAAAGAAA-A
1 AAGAAAAAGAAAGA
10607249 AAGAAAAA
1 AAGAAAAA
10607257 CTAGGGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 12 0.63
14 3 0.16
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAAAGA
Found at i:10607463 original size:21 final size:21
Alignment explanation
Indices: 10607413--10607463 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
10607403 TTGAAAAAAT
*
10607413 AATGAATTAGGGATTTAATTG
1 AATGAATTTGGGATTTAATTG
10607434 AATGAATTTGGGATTTAATTG
1 AATGAATTTGGGATTTAATTG
10607455 AATGAATTT
1 AATGAATTT
10607464 TAAGTTAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (21 bp):
AATGAATTTGGGATTTAATTG
Found at i:10613792 original size:26 final size:26
Alignment explanation
Indices: 10613714--10613895 Score: 255
Period size: 26 Copynumber: 7.2 Consensus size: 26
10613704 GCCTAGCCTA
10613714 TTTT-AAT-AACTGGGGCA-AAGCCC
1 TTTTCAATAAACTGGGGCATAAGCCC
**
10613737 TTTTCGGTAAACTGGGGCA-AAGCCC
1 TTTTCAATAAACTGGGGCATAAGCCC
*
10613762 TTTTCAATAAACTAGGGCATAAGCCC
1 TTTTCAATAAACTGGGGCATAAGCCC
** *
10613788 TTTTCGGTAAACTGGGGCATAAGACC
1 TTTTCAATAAACTGGGGCATAAGCCC
*
10613814 TTTTCAATAAACTAGGGCATAAGCCC
1 TTTTCAATAAACTGGGGCATAAGCCC
**
10613840 TTTTCGGTAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTGGGGCATAAGCCC
10613866 TTTTCAATAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTGGGGCATAAGCCC
10613892 TTTT
1 TTTT
10613896 GCACTTCCTC
Statistics
Matches: 138, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
23 4 0.03
24 1 0.01
25 32 0.23
26 101 0.73
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
TTTTCAATAAACTGGGGCATAAGCCC
Found at i:10613836 original size:52 final size:52
Alignment explanation
Indices: 10613714--10613895 Score: 309
Period size: 52 Copynumber: 3.6 Consensus size: 52
10613704 GCCTAGCCTA
*
10613714 TTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
*
10613762 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGACC
1 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
10613814 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
*
10613866 TTTTCAATAAACTGGGGCATAAGCCCTTTT
1 TTTTCAATAAACTAGGGCATAAGCCCTTTT
10613896 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
48 4 0.03
49 3 0.02
50 9 0.07
51 25 0.20
52 85 0.67
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (52 bp):
TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
Found at i:10614756 original size:27 final size:27
Alignment explanation
Indices: 10614694--10614771 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
10614684 GGGCATATTC
10614694 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
10614721 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
10614748 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
10614772 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:10614842 original size:27 final size:27
Alignment explanation
Indices: 10614816--10615268 Score: 159
Period size: 27 Copynumber: 16.7 Consensus size: 27
10614806 ATCTACAAAC
* *
10614816 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
** * *
10614843 CAATAGAATTTCCA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-CAGTAA-TTTTATAAA-T
* * *
10614872 CAAGAGTATTTCTA-TAACTTTGTAAAT
1 CAAGGGTATTTC-AGTAATTTTATAAAT
* *
10614899 CAAGGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
** * * *
10614926 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** *
10614952 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCAGTAATTTTATAAAT
* ** * *
10614979 CTAGGGGTATTTTGGTAAATTTACAAAT
1 C-AAGGGTATTTCAGTAATTTTATAAAT
** * * * *
10615007 TGAGGGTATTCCTGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
* * *
10615034 CAAGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** *
10615060 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTCAGTAATTTTA-TAAAT
* * * *
10615087 CGAGGGTATTT-TGTTAATTTTGTAAAC
1 CAAGGGTATTTCAG-TAATTTTATAAAT
* * *
10615114 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *** * *
10615141 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
*** *
10615168 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** * *
10615195 CGAGGGTAAAAT-GGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTATAAAT
* * * *
10615222 CGAGGGTACTTT-GGTAATTTTACAATT
1 CAAGGGTA-TTTCAGTAATTTTATAAAT
**
10615249 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
10615269 GGTAAACTAA
Statistics
Matches: 339, Mismatches: 71, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
26 29 0.09
27 276 0.81
28 21 0.06
29 13 0.04
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTATAAAT
Found at i:10614961 original size:54 final size:53
Alignment explanation
Indices: 10614901--10615148 Score: 239
Period size: 54 Copynumber: 4.6 Consensus size: 53
10614891 TTGTAAATCA
* * *
10614901 AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC
1 AGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
* * * **
10614954 AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAAATTTACAAATTG
1 AG-GGTATTTTAGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAA-CC
* * * * * *
10615009 AGGGTATTCCT-GTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACT
1 AGGGTATT-TTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
* ** * **
10615062 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGTTAATTTTGTAAACC
1 AGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
**
10615115 GAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 -AGGGTATTTTAGTAATTTTACAAATCGAGGGTA
10615149 AAACAGTAAT
Statistics
Matches: 157, Mismatches: 31, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
52 1 0.01
53 43 0.27
54 108 0.69
55 5 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC
Found at i:10615002 original size:81 final size:80
Alignment explanation
Indices: 10614901--10615134 Score: 308
Period size: 81 Copynumber: 2.9 Consensus size: 80
10614891 TTGTAAATCA
* *
10614901 AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAG-GGTATTTT
*
10614965 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
* * *
10614981 AGGGGTATTTTGGTAAATTTACAAATTGAGGGTATTCCTGTAATTTTACAAACCAAGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTT
*
10615046 AGCAATTTTACAAACT
65 AGTAATTTTACAAACT
** * * * ** *
10615062 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGTTAATTTTGTAAACCGAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTA
10615127 GTAATTTT
66 GTAATTTT
10615135 GTAAATCGAG
Statistics
Matches: 133, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 61 0.46
81 70 0.53
82 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTA
GTAATTTTACAAACT
Found at i:10615266 original size:54 final size:53
Alignment explanation
Indices: 10614877--10615268 Score: 213
Period size: 54 Copynumber: 7.3 Consensus size: 53
10614867 AAAGTCAAGA
* * *
10614877 GTATTTCTA-TAACTTTGTAAATCAAGGGTATTTTAGTAATTTTACAAATTGAGG
1 GTATTTC-AGTAA-TTTATAAATCGAGGGTATTTTAGTAATTTTACAAATCGAGG
* * * * *
10614931 GTATTTCGGTAATTTCACAAA-CCAGTGGTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTCAGTAATTT-ATAAATCGAG-GGTATTTTAGTAATTTTACAAATCGA-GG
** * * * * *
10614985 GTATTTTGGTAAATTTACAAATTGAGGGTATTCCT-GTAATTTTACAAACCAAGG
1 GTATTTCAGT-AATTTATAAATCGAGGGTATT-TTAGTAATTTTACAAATCGAGG
* * * * * **
10615039 GTATTTTAGCAATTT-TACAAACTAGGGTATTTTGGTAATTTTACTGATCGAGG
1 GTATTTCAGTAATTTATA-AATCGAGGGTATTTTAGTAATTTTACAAATCGAGG
* * * **
10615092 GTATTT-TGTTAATTTTGTAAACCGAGGGTATTTTAGTAATTTTGTAAATCGAGG
1 GTATTTCAG-TAA-TTTATAAATCGAGGGTATTTTAGTAATTTTACAAATCGAGG
*** * * **** * *
10615146 GTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGG
1 GTATTTCAGTAATT-TATAAATCGAGGGTATTTTAGTAATTTTACAAATCGAGG
** * * * * *
10615200 GTAAAAT-GGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAATTTGAGG
1 GT-ATTTCAGTAATT-TATAAATCGAGGGTATTTTAGTAATTTTACAAATCGAGG
10615254 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
10615269 GGTAAACTAA
Statistics
Matches: 261, Mismatches: 60, Indels: 35
0.73 0.17 0.10
Matches are distributed among these distances:
52 3 0.01
53 50 0.19
54 192 0.74
55 16 0.06
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (53 bp):
GTATTTCAGTAATTTATAAATCGAGGGTATTTTAGTAATTTTACAAATCGAGG
Found at i:10620273 original size:36 final size:34
Alignment explanation
Indices: 10620231--10620760 Score: 292
Period size: 36 Copynumber: 14.6 Consensus size: 34
10620221 ACAACAACTT
* *
10620231 TTAAAAATTGTTGGGATAGATCCATCTAAGGCAAAC
1 TTAAAAA-GGTTGGGATAGA-CCATCTAAGGCAACC
* * * **
10620267 TTAAAAAGGTTGGCATAGACCTTGTCTAAGACAAGG
1 TTAAAAAGGTTGGGATAGACC--ATCTAAGGCAACC
*
10620303 TATAAAAAAAAGGTT-GGATAGAGCCGTCTAAGGCAACC
1 T-T---AAAAAGGTTGGGATAGA-CCATCTAAGGCAACC
10620341 TTAAAAAGGTTGGGATAGACCTATCTAAGGCAACC
1 TTAAAAAGGTTGGGATAGACC-ATCTAAGGCAACC
* *
10620376 TTAAATAGGTTGGGATAGACCATGTCAAAGGCAACC
1 TTAAAAAGGTTGGGATAGACCA--TCTAAGGCAACC
* *
10620412 TTAAATAGGTTGGGATAGACCATGTCAAAGGCAACC
1 TTAAAAAGGTTGGGATAGACCA--TCTAAGGCAACC
* * *
10620448 TTTAAAAAATGTTGGGATAGACCCATCTAAGGAAACA
1 -TT-AAAAAGGTTGGGATAGA-CCATCTAAGGCAACC
* * * *
10620485 TTAAAATGGTTGGGATGGACCTTGTCTAAGGCAACTT
1 TTAAAAAGGTTGGGATAGACC--ATCTAAGGCAAC-C
* * * *
10620522 TTAAAAAAGGTTGGCATAGGTCCATTTAAAGCAACC
1 TT-AAAAAGGTTGGGATA-GACCATCTAAGGCAACC
** * ** * *
10620558 TTGGAAAGGCTGGGATA-AATATTGTCTAATGAAACC
1 TTAAAAAGGTTGGGATAGACCA---TCTAAGGCAACC
* * * *
10620594 TTTAAAAAAGGTTGTGATAAACCCATCTAAAGTAACC
1 -TT-AAAAAGGTTGGGATAGA-CCATCTAAGGCAACC
* * * *
10620631 TTAAAAAGGTTGAGATAAATCTCGTCTAAGGCAACTT
1 TTAAAAAGGTTGGGATAGA-C-CATCTAAGGCAAC-C
* * * * *
10620668 TTAGAAAAGGTTGGTATTGACCTATTTAAGACAACG
1 TTA-AAAAGGTTGGGATAGACC-ATCTAAGGCAACC
* *
10620704 TTAAAAATGTTGGGATAGACCTATTTACA-GCAACAC
1 TTAAAAAGGTTGGGATAGACC-ATCTA-AGGCAAC-C
* *
10620740 TAAAAAAGGTTAGGATAGACC
1 TTAAAAAGGTTGGGATAGACC
10620761 TTTTCTTATA
Statistics
Matches: 390, Mismatches: 72, Indels: 64
0.74 0.14 0.12
Matches are distributed among these distances:
33 1 0.00
34 16 0.04
35 116 0.30
36 122 0.31
37 49 0.13
38 61 0.16
39 13 0.03
40 12 0.03
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (34 bp):
TTAAAAAGGTTGGGATAGACCATCTAAGGCAACC
Found at i:10620367 original size:109 final size:106
Alignment explanation
Indices: 10620225--10620540 Score: 325
Period size: 109 Copynumber: 2.9 Consensus size: 106
10620215 TTGTCTACAA
* *
10620225 CAACTTTTAAAAATTGTTGGGATAGATCCATCTAAGGCAAACTTAAAAAGGTTGGCATAGACCTT
1 CAACCTTTAAAAA-TGTTGGGATAGA-CCATCTAAGGCAAACTTAAAAAGGTTGGGATAGACCTT
** *
10620290 GTCTAAGACAAGGTATAAAAAAAAGGTT-GGATAGAGCC-GTCTAAGG
64 GTCTAAGACAACCT-T---AAAAAGGTTGGGATAGA-CCAGTCAAAGG
* * * *
10620336 CAACC-TTAAAAAGGTTGGGATAGACCTATCTAAGGCAACCTTAAATAGGTTGGGATAGACCATG
1 CAACCTTTAAAAATGTTGGGATAGACC-ATCTAAGGCAAACTTAAAAAGGTTGGGATAGACCTTG
* * *
10620400 TCAAAGGCAACCTTAAATAGGTTGGGATAGACCATGTCAAAGG
65 TCTAAGACAACCTTAAAAAGGTTGGGATAGACCA-GTCAAAGG
* *
10620443 CAACCTTTAAAAAATGTTGGGATAGACCCATCTAAGG-AAACATTAAAATGGTTGGGATGGACCT
1 CAACCTTT-AAAAATGTTGGGATAGA-CCATCTAAGGCAAAC-TTAAAAAGGTTGGGATAGACCT
* * *
10620507 TGTCTAAGGCAACTTTTAAAAAAGGTTGGCATAG
63 TGTCTAAGACAAC-CTT-AAAAAGGTTGGGATAG
10620541 GTCCATTTAA
Statistics
Matches: 173, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
105 10 0.06
106 7 0.04
107 12 0.07
108 8 0.05
109 107 0.62
110 11 0.06
111 18 0.10
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (106 bp):
CAACCTTTAAAAATGTTGGGATAGACCATCTAAGGCAAACTTAAAAAGGTTGGGATAGACCTTGT
CTAAGACAACCTTAAAAAGGTTGGGATAGACCAGTCAAAGG
Found at i:10620572 original size:73 final size:73
Alignment explanation
Indices: 10620188--10620725 Score: 433
Period size: 73 Copynumber: 7.4 Consensus size: 73
10620178 CCTTGATAAG
* ** ** * ** *
10620188 GCAACATTAAAAAGGTTGCTATAGTTCTTGTCTACA-ACAACTTTTAAAAATTGTTGGGATAGAT
1 GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTA-AGGCAACTTTTAAAAAAGGTTGGGATAGAC
*
10620252 CCATCTAAG
65 CCATCTAAA
* * * * **
10620261 GCAAACTTAAAAAGGTTGGCATAGACCTTGTCTAAGACAAGGTATAAAAAAAAGGTT-GGATAGA
1 GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA-CT-TTTAAAAAAGGTTGGGATAGA
* * *
10620325 GCCGTCTAAG
64 CCCATCTAAA
* * *
10620335 GCAACCTTAAAAAGGTTGGGATAGACC-TATCTAAGGCAAC-CTT-AAATAGGTTGGGATAGA-C
1 GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACC
*
10620396 CATGTCAAA
66 CATCT-AAA
* * * * *
10620405 GGCAACCTTAAATAGGTTGGGATAGACCATGTCAAAGGCAACCTTTAAAAAATGTTGGGATAGAC
1 -GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGAC
*
10620470 CCATCTAAG
65 CCATCTAAA
* * * * * **
10620479 GAAACATTAAAATGGTTGGGATGGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGCATAGGTC
1 GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACC
*
10620544 CATTTAAA
66 CATCTAAA
** * * ** * * * * *
10620552 GCAACCTTGGAAAGGCTGGGATAAATATTGTCTAATGAAACCTTTAAAAAAGGTTGTGATAAACC
1 GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACC
10620617 CATCTAAA
66 CATCTAAA
* * * * * * * *
10620625 GTAACCTTAAAAAGGTTGAGATAAATCTCGTCTAAGGCAACTTTTAGAAAAGGTTGGTATTGACC
1 GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACC
* *
10620690 TAT-TTAA
66 CATCTAAA
* *
10620697 GACAACGTTAAAAATGTTGGGATAGACCT
1 G-CAACCTTAAAAAGGTTGGGATAGACCT
10620726 ATTTACAGCA
Statistics
Matches: 365, Mismatches: 89, Indels: 22
0.77 0.19 0.05
Matches are distributed among these distances:
69 12 0.03
70 9 0.02
71 26 0.07
72 16 0.04
73 230 0.63
74 58 0.16
75 14 0.04
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (73 bp):
GCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACC
CATCTAAA
Found at i:10620725 original size:35 final size:36
Alignment explanation
Indices: 10620672--10620761 Score: 103
Period size: 35 Copynumber: 2.5 Consensus size: 36
10620662 CAACTTTTAG
* * * *
10620672 AAAAGGTTGGTATTGACCTATTTA-AGACAAC-GTTA
1 AAAAGGTTGGGATAGACCTATTTACAG-CAACACTAA
*
10620707 AAAATGTTGGGATAGACCTATTTACAGCAACACTAA
1 AAAAGGTTGGGATAGACCTATTTACAGCAACACTAA
*
10620743 AAAAGGTTAGGATAGACCT
1 AAAAGGTTGGGATAGACCT
10620762 TTTCTTATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
35 25 0.54
36 21 0.46
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (36 bp):
AAAAGGTTGGGATAGACCTATTTACAGCAACACTAA
Found at i:10621143 original size:45 final size:45
Alignment explanation
Indices: 10621079--10621165 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
10621069 AACACGTTGC
* *
10621079 AAACATGTTGTCAACTTGATTCCCATGATATCAAAAAATTATACA
1 AAACATGTTGTCAACTTGATTCCCATGACACCAAAAAATTATACA
* *
10621124 AAACATTTTGTCGACTTGATTCCCATGACACCAAAAAATTAT
1 AAACATGTTGTCAACTTGATTCCCATGACACCAAAAAATTAT
10621166 GAGACAACTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (45 bp):
AAACATGTTGTCAACTTGATTCCCATGACACCAAAAAATTATACA
Found at i:10624443 original size:18 final size:18
Alignment explanation
Indices: 10624420--10624463 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10624410 TACTCATAAT
*
10624420 CAGAGAAAGAACAAGTAC
1 CAGAGAAAGAACAAATAC
*
10624438 CAGAGAAAGAATAAATAC
1 CAGAGAAAGAACAAATAC
10624456 CAGCAGAA
1 CAG-AGAA
10624464 GGTAATAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.57, C:0.16, G:0.20, T:0.07
Consensus pattern (18 bp):
CAGAGAAAGAACAAATAC
Found at i:10625235 original size:9 final size:9
Alignment explanation
Indices: 10625221--10625249 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
10625211 ACACTCTTGT
10625221 ATTCACAAC
1 ATTCACAAC
10625230 ATTCACAAC
1 ATTCACAAC
10625239 ATTCACAAC
1 ATTCACAAC
10625248 AT
1 AT
10625250 AAGCAAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (9 bp):
ATTCACAAC
Found at i:10634377 original size:35 final size:35
Alignment explanation
Indices: 10634319--10634415 Score: 106
Period size: 35 Copynumber: 2.8 Consensus size: 35
10634309 TGCCAATAGC
* *
10634319 TGGAGTAGGTGGTGGAC-AGCAGATGCACCAGTGGG
1 TGGAGCAGGTGGTGGACGA-CAGATGCACCAGTGCG
* * * *
10634354 TGGATCAGGTGGTGAACGACAGATGCGCCAGTGCT
1 TGGAGCAGGTGGTGGACGACAGATGCACCAGTGCG
* *
10634389 TGGAGCAGGTTGTGGACGGCAGATGCA
1 TGGAGCAGGTGGTGGACGACAGATGCA
10634416 ATTGGTTTTC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
35 49 0.98
36 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.42, T:0.19
Consensus pattern (35 bp):
TGGAGCAGGTGGTGGACGACAGATGCACCAGTGCG
Found at i:10635557 original size:31 final size:31
Alignment explanation
Indices: 10635512--10635688 Score: 302
Period size: 31 Copynumber: 5.7 Consensus size: 31
10635502 TTAGTCTTGA
*
10635512 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
10635542 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
10635573 CATATCACTGGGCCGAAGCCTTTTCATATAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
10635604 CATATCACTGGGCCGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
10635635 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
10635666 CATATCACTAGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
10635689 ACTGTAAACA
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.04
31 133 0.96
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:10635759 original size:42 final size:42
Alignment explanation
Indices: 10635712--10635843 Score: 246
Period size: 42 Copynumber: 3.1 Consensus size: 42
10635702 TGGCCCTTAG
*
10635712 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
10635754 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
10635796 GCCCATTTCAATATCACATGTAATTTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
10635838 GCCCAT
1 GCCCAT
10635844 CTGGGGAGAC
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:10636027 original size:25 final size:25
Alignment explanation
Indices: 10635993--10636062 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
10635983 CTCTTTTAAT
*
10635993 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
10636018 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
10636043 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
10636063 AGCACTTCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:10636938 original size:26 final size:26
Alignment explanation
Indices: 10636875--10636945 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
10636865 CATATTCTTT
10636875 ATTTTACCATACAAGGGTATTACGGTC
1 ATTTTACC-TACAAGGGTATTACGGTC
* *
10636902 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTA-CCTACAAGGG-TATTACGGTC
*
10636929 TTTTTACCTACAAGGGT
1 ATTTTACCTACAAGGGT
10636946 GTTCTGGTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
25 1 0.03
26 9 0.24
27 24 0.65
28 3 0.08
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (26 bp):
ATTTTACCTACAAGGGTATTACGGTC
Found at i:10636992 original size:27 final size:27
Alignment explanation
Indices: 10636959--10637175 Score: 138
Period size: 27 Copynumber: 8.0 Consensus size: 27
10636949 CTGGTAAATC
*
10636959 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
** *
10636986 TGTAAACCAATGGTATTTTTA-TAATTTT
1 TACAAACCAAGGGTA-TTTTAGTAA-TTT
* * *
10637014 TAAAAAGTCAAGGGTATTTTTGTAATTT
1 TACAAA-CCAAGGGTATTTTAGTAATTT
** **
10637042 TGTAAA-TTAGTGGTATTTTAGTAATTT
1 TACAAACCAAG-GGTATTTTAGTAATTT
*** **
10637069 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
* **
10637096 CACAAACC-AGTGGTATTTCGGTAATTT
1 TACAAACCAAG-GGTATTTTAGTAATTT
*
10637123 TACAAA-CTAGGTGTATTTTAGTAATTT
1 TACAAACCAAGG-GTATTTTAGTAATTT
* *
10637150 TACAAA-CTAGAGGTATTTTGGTAATT
1 TACAAACCAAG-GGTATTTTAGTAATT
10637176 CTATCCTACA
Statistics
Matches: 154, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
26 6 0.04
27 112 0.73
28 26 0.17
29 10 0.06
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTTAGTAATTT
Found at i:10637108 original size:54 final size:54
Alignment explanation
Indices: 10637050--10637208 Score: 178
Period size: 54 Copynumber: 2.9 Consensus size: 54
10637040 TTTGTAAATT
* * *
10637050 AGTGGTATTTTAGTAATTTTACAAATTGAGG-GTATTTCGGTAATTTCACAAACC
1 AGTGGTATTTTGGTAATTTTACAAACT-AGGTGTATTTCAGTAATTTCACAAACC
* * * *
10637104 AGTGGTATTTCGGTAATTTTACAAACTAGGTGTATTTTAGTAATTTTACAAACT
1 AGTGGTATTTTGGTAATTTTACAAACTAGGTGTATTTCAGTAATTTCACAAACC
* * ** *
10637158 AGAGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 AGTGGTATTTTGGTAATTTTA-CAAACTAGGTGTATTTCAGTAATTTCACAA
10637209 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.03
54 82 0.93
55 3 0.03
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (54 bp):
AGTGGTATTTTGGTAATTTTACAAACTAGGTGTATTTCAGTAATTTCACAAACC
Found at i:10637192 original size:81 final size:81
Alignment explanation
Indices: 10637054--10637208 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
10637044 TAAATTAGTG
* * *
10637054 GTATTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGTA
1 GTATTTTAGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGTA
*
10637119 ATTTTACAAACTAGGT
66 ATTTCACAAACTAGGT
* **
10637135 GTATTTTAGTAATTTTACAAACTAGA-GGTATTTTGGTAA-TTCTATCCTA-CAGGGGTATTTCA
1 GTATTTTAGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTC-A-CAAACCAGGGGTATTTCA
10637197 GTAATTTCACAA
63 GTAATTTCACAA
10637209 TCGAGGGTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 3 0.05
81 56 0.88
82 5 0.08
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGTA
ATTTCACAAACTAGGT
Found at i:10637215 original size:27 final size:27
Alignment explanation
Indices: 10637053--10637215 Score: 107
Period size: 27 Copynumber: 6.0 Consensus size: 27
10637043 GTAAATTAGT
* * *
10637053 GGTATTTTAGTAATTTTACAAATTGA-G
1 GGTATTTCAGTAATTTCACAAA-CGAGG
* * *
10637080 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTCAGTAATTTCACAAACGAGG
* * *
10637107 GGTATTTCGGTAATTTTACAAACTAGG
1 GGTATTTCAGTAATTTCACAAACGAGG
* * * * *
10637134 TGTATTTTAGTAATTTTACAAACTAGA
1 GGTATTTCAGTAATTTCACAAACGAGG
** **
10637161 GGTATTTTGGTAA-TTCTATCCTAC-AGG
1 GGTATTTCAGTAATTTC-A-CAAACGAGG
*
10637188 GGTATTTCAGTAATTTCACAATCGAGG
1 GGTATTTCAGTAATTTCACAAACGAGG
10637215 G
1 G
10637216 TAAAACGGTA
Statistics
Matches: 107, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
26 5 0.05
27 96 0.90
28 6 0.06
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTCACAAACGAGG
Found at i:10637241 original size:27 final size:27
Alignment explanation
Indices: 10637207--10637431 Score: 281
Period size: 27 Copynumber: 8.3 Consensus size: 27
10637197 GTAATTTCAC
* *
10637207 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
10637234 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAATGGTAATTTTATA
* *
10637261 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
10637288 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * * *
10637315 AATTGAGGATAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * * *
10637342 AATCGAGGATGAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* ** *
10637369 AATCGAGGGTGAAACAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
10637396 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
10637423 AATCGAGGG
1 AATCGAGGG
10637432 CATTTCAATA
Statistics
Matches: 175, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 173 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:10639057 original size:7 final size:7
Alignment explanation
Indices: 10639047--10639125 Score: 56
Period size: 7 Copynumber: 11.7 Consensus size: 7
10639037 GCTAACTCTT
10639047 AACCCTA
1 AACCCTA
*
10639054 AA-CCTT
1 AACCCTA
10639060 AA-C-TA
1 AACCCTA
*
10639065 AACCCCA
1 AACCCTA
*
10639072 CACCCTA
1 AACCCTA
* *
10639079 AATCTTA
1 AACCCTA
*
10639086 AACCTTA
1 AACCCTA
10639093 AACCCTA
1 AACCCTA
10639100 AACCCTA
1 AACCCTA
* *
10639107 AATCATA
1 AACCCTA
*
10639114 CACCCTA
1 AACCCTA
10639121 AACCC
1 AACCC
10639126 CTTATATATG
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
5 3 0.06
6 7 0.13
7 44 0.81
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:10639104 original size:28 final size:27
Alignment explanation
Indices: 10639047--10639126 Score: 83
Period size: 28 Copynumber: 3.0 Consensus size: 27
10639037 GCTAACTCTT
*
10639047 AACCCTAAACCTT-AA-CTAAACCCCA
1 AACCCTAAATCTTAAACCTAAACCCCA
* *
10639072 CACCCTAAATCTTAAACCTTAAACCCTA
1 AACCCTAAATCTTAAACC-TAAACCCCA
* *
10639100 AACCCTAAATCATACACCCTAAACCCC
1 AACCCTAAATCTTA-AACCTAAACCCC
10639127 TTATATATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 11 0.25
26 2 0.05
27 1 0.02
28 27 0.61
29 3 0.07
ACGTcount: A:0.41, C:0.40, G:0.00, T:0.19
Consensus pattern (27 bp):
AACCCTAAATCTTAAACCTAAACCCCA
Found at i:10639740 original size:140 final size:140
Alignment explanation
Indices: 10639359--10639906 Score: 735
Period size: 140 Copynumber: 3.9 Consensus size: 140
10639349 TATATATATA
** * * * * * *
10639359 TCGTCTTAGGACTGGAC-AAATCCAACTATTATTTAAGTGTTGACTTAGGCATACATATACCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* * * * *
10639423 CCTTATACAAAGAGTTGGCCAAAACATAAGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGTCG
66 CCTTATACAAAGAGTT-GCGAAAGCGTATGTTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
*
10639488 CCACAATAGTG
130 CCAAAATAGTG
10639499 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* * *
10639564 CCTTATACAAAGAGTTGCCGAAAGCGTATATTGGCATGTCTATCCCAACACATAAGAAAGTGTCA
66 CCTTATACAAAGAGTTG-CGAAAGCGTATGTTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
10639629 CCAAAATAGTG
130 CCAAAATAGTG
* *
10639640 TCGTCTTAGGACTACACAAAAACCAACTCTTA-TCAAGCATTGCCTTAGGCATACATATCCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* * * **
10639704 CCTTATACAAAGAGTTGCGTAAAGCGTATCTTGGCATGTCTATCGCAACACTTAAAAAAACGTCG
66 CCTTATACAAAGAGTTGCG-AAAGCGTATGTTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
*
10639769 CCATAATAGTG
130 CCAAAATAGTG
* * * * * *
10639780 TCGTCTTAGGGCTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCTTTAAGCATGCATATCCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
*
10639844 CCTTATACAAAAAGTTGGCGAAAGCGTATGTTGGCCA-GTCTATCCCAACACTTAAGAAAGTGT
66 CCTTATACAAAGAGTT-GCGAAAGCGTATGTTGG-CATGTCTATCCCAACACTTAAGAAAGTGT
10639907 TGCCCCATAA
Statistics
Matches: 361, Mismatches: 41, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
139 15 0.04
140 204 0.57
141 142 0.39
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (140 bp):
TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
CCTTATACAAAGAGTTGCGAAAGCGTATGTTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGC
CAAAATAGTG
Found at i:10639920 original size:140 final size:140
Alignment explanation
Indices: 10639142--10639928 Score: 734
Period size: 140 Copynumber: 5.6 Consensus size: 140
10639132 TATGCATACA
* * *
10639142 CCAACCCTTATACAAAGAGTTGGCCACAA-TGTATGTTGGCAAGTCTATCCCAAAACTTAGGAAA
1 CCAACCCTTATACAAAGAGTTGGCCA-AAGCGTATGTTGGCAAGTCTATCCCAACACTTAAGAAA
* ** * * * **
10639206 GTG-TCAGCCCA-AAAGTGTACGTAGGGATAGTG-TTGGATAAAG-CAGACTCTTATTTAAGTTT
65 GTGTTC--CCCATATAGTGT-CGT---CTTAG-GACTAGACAAAGCCA-ACTCTTATTTAAGCGT
*
10639267 TGCCTTAAGCATACATATC
122 TGCCTTAGGCATACATATC
* * * * * ** * *
10639286 TCAATCCTTATACAAAAAGTTGACCAAAGCGTATGTCGAAAAGTCTATCGCAACACTT-AGGAA-
1 CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAAGAAAG
* * * * * * *
10639349 T-AT----ATATA-TATCGTCTTAGGACTGGACAAATCCAACTATTATTTAAGTGTTGACTTAGG
66 TGTTCCCCATATAGTGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGG
*
10639408 CATACATATA
131 CATACATATC
* * *
10639418 CCAACCCTTATACAAAGAGTTGGCCAAAACATAAGTTGGCAAGTCTATCCCAACACTTAAGAAAG
1 CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAAGAAAG
* *
10639483 TG-TCGCCACA-ATAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTT
66 TGTTC-CC-CATATAGTGTCGTCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTT
10639546 AGGCATACATATC
128 AGGCATACATATC
* * *
10639559 CCAACCCTTATACAAAGAGTT-GCCGAAAGCGTATATTGGCATGTCTATCCCAACACATAAGAAA
1 CCAACCCTTATACAAAGAGTTGGCC-AAAGCGTATGTTGGCAAGTCTATCCCAACACTTAAGAAA
* * * * * *
10639623 GTG-TCACCAAAATAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTA-TCAAGCATTGCCTT
65 GTGTTC-CCCATATAGTGTCGTCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTT
10639686 AGGCATACATATC
128 AGGCATACATATC
* * * * *
10639699 CCAACCCTTATACAAAGAGTT-GCGTAAAGCGTATCTTGGCATGTCTATCGCAACACTTAAAAAA
1 CCAACCCTTATACAAAGAGTTGGC-CAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAAGAAA
** * * *
10639763 ACG-TCGCCATAATAGTGTCGTCTTAGGGCTAGACAAAGCCAACTCTTATTTAAGCGTTGCTTTA
65 GTGTTCCCCAT-ATAGTGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTA
* *
10639827 AGCATGCATATC
129 GGCATACATATC
* * *
10639839 CCAACCCTTATACAAAAAGTTGGCGAAAGCGTATGTTGGCCAGTCTATCCCAACACTTAAGAAAG
1 CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAAGAAAG
*
10639904 TGTTGCCCCATA-AGTGTCGTATTAG
66 TGTT-CCCCATATAGTGTCGTCTTAG
10639929 CACTGTTTTG
Statistics
Matches: 535, Mismatches: 84, Indels: 52
0.80 0.13 0.08
Matches are distributed among these distances:
131 1 0.00
132 87 0.16
133 6 0.01
134 2 0.00
135 3 0.01
136 3 0.01
137 2 0.00
139 18 0.03
140 218 0.41
141 138 0.26
142 7 0.01
143 5 0.01
144 45 0.08
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (140 bp):
CCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAAGAAAG
TGTTCCCCATATAGTGTCGTCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGG
CATACATATC
Found at i:10642659 original size:13 final size:13
Alignment explanation
Indices: 10642636--10642677 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
10642626 GCTCAGCAGG
*
10642636 GACACGCCCGTGT
1 GACACGACCGTGT
10642649 GACAC-AGCCGTGT
1 GACACGA-CCGTGT
10642662 GACACGACCGTGT
1 GACACGACCGTGT
10642675 GAC
1 GAC
10642678 GTGATTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 25 0.96
14 1 0.04
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.14
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:10648849 original size:28 final size:28
Alignment explanation
Indices: 10648818--10648906 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 28
10648808 CACTTAACGG
*
10648818 GCGAAGTATCGGGGATGGCACTTAGTGT
1 GCGAAGTATCGAGGATGGCACTTAGTGT
* * *
10648846 GCGATA-CATCCAGAATGGCACTTAGTGT
1 GCGA-AGTATCGAGGATGGCACTTAGTGT
* *
10648874 GCGAAGTAACGAGGATGGAACTTAGTGT
1 GCGAAGTATCGAGGATGGCACTTAGTGT
10648902 GCGAA
1 GCGAA
10648907 ACATCCAGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
27 1 0.02
28 48 0.96
29 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.34, T:0.22
Consensus pattern (28 bp):
GCGAAGTATCGAGGATGGCACTTAGTGT
Found at i:10648891 original size:56 final size:56
Alignment explanation
Indices: 10648818--10648931 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
10648808 CACTTAACGG
* * * * * *
10648818 GCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAATGGCACTTAGTGT
1 GCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAACGACACTTAGTGT
10648874 GCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAACGACACTTAGTGT
1 GCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAACGACACTTAGTGT
10648930 GC
1 GC
10648932 AAGGTATAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (56 bp):
GCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAACGACACTTAGTGT
Found at i:10648924 original size:28 final size:28
Alignment explanation
Indices: 10648836--10648931 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
10648826 TCGGGGATGG
* * *
10648836 CACTTAGTGTGCGATACATCCAGAATGG
1 CACTTAGTGTGCGAAACATCCAGAACGA
** * * **
10648864 CACTTAGTGTGCGAAGTAACGAGGATGGA
1 CACTTAGTGTGCGAAACATCCA-GAACGA
10648893 -ACTTAGTGTGCGAAACATCCAGAACGA
1 CACTTAGTGTGCGAAACATCCAGAACGA
10648920 CACTTAGTGTGC
1 CACTTAGTGTGC
10648932 AAGGTATAGG
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
27 4 0.08
28 45 0.87
29 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATCCAGAACGA
Found at i:10649045 original size:32 final size:32
Alignment explanation
Indices: 10649009--10649103 Score: 118
Period size: 32 Copynumber: 3.0 Consensus size: 32
10648999 TGAGTATGAG
* * * *
10649009 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
* * *
10649041 ATTGGTACAATATGGTATAGGTATGTATGAAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
*
10649073 ATTGGTACAATATGGTACATGTATGTACGGA
1 ATTGGTACAATATGGTACAGGTATGTACGGA
10649104 GATTCAATTG
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (32 bp):
ATTGGTACAATATGGTACAGGTATGTACGGAA
Found at i:10655070 original size:28 final size:28
Alignment explanation
Indices: 10655028--10655129 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 28
10655018 TAATTATATG
* **
10655028 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAATGTGCGAAGTATCAAGGA
* * *
10655056 TGGCACTTAATGTGCGATA-CATCCAGAA
1 TGGCACTTAATGTGCGA-AGTATCAAGGA
* *
10655084 TGGCACTTAGTGTGCGAAGTAACAAGGA
1 TGGCACTTAATGTGCGAAGTATCAAGGA
*
10655112 TGGCACTTAGTGTGCGAA
1 TGGCACTTAATGTGCGAA
10655130 ACATCCAGAA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (28 bp):
TGGCACTTAATGTGCGAAGTATCAAGGA
Found at i:10655114 original size:56 final size:56
Alignment explanation
Indices: 10655028--10655154 Score: 173
Period size: 56 Copynumber: 2.3 Consensus size: 56
10655018 TAATTATATG
** * ** *
10655028 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAATGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACAAGGATGGCACTTAATGTGCGAAACATCCAGAA
*
10655084 TGGCACTTAGTGTGCGAAGTAACAAGGATGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACAAGGATGGCACTTAATGTGCGAAACATCCAGAA
* *
10655140 CGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
10655155 AAGGTATAGG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACAAGGATGGCACTTAATGTGCGAAACATCCAGAA
Found at i:10655146 original size:28 final size:28
Alignment explanation
Indices: 10655055--10655154 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 28
10655045 AGTATCGGGG
* *
10655055 ATGGCACTTAATGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
** * * *
10655083 ATGGCACTTAGTGTGCGAAGTAACAAGG
1 ATGGCACTTAGTGTGCGAAACATCCAGA
10655111 ATGGCACTTAGTGTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
* *
10655139 ACGACACTTAGTGTGC
1 ATGGCACTTAGTGTGC
10655155 AAGGTATAGG
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAACATCCAGA
Found at i:10655268 original size:32 final size:32
Alignment explanation
Indices: 10655232--10655305 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
10655222 TGAGTATGAG
* *
10655232 ATTGGTACGAGATGATACAAGTATCTACGGAA
1 ATTGGTACAAGATGATACAAGTATCTACGAAA
* * * * *
10655264 ATTGGTACAATATGGTATAGGTATGTACGAAA
1 ATTGGTACAAGATGATACAAGTATCTACGAAA
10655296 ATTGGTACAA
1 ATTGGTACAA
10655306 TATGGTATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.28
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAAGTATCTACGAAA
Found at i:10655306 original size:32 final size:32
Alignment explanation
Indices: 10655252--10655322 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
10655242 GATGATACAA
* *
10655252 GTATCTACGGAAATTGGTACAATATGGTATAG
1 GTATGTACGAAAATTGGTACAATATGGTATAG
*
10655284 GTATGTACGAAAATTGGTACAATATGGTATAT
1 GTATGTACGAAAATTGGTACAATATGGTATAG
10655316 GTATGTA
1 GTATGTA
10655323 TGGAGATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.34
Consensus pattern (32 bp):
GTATGTACGAAAATTGGTACAATATGGTATAG
Found at i:10659351 original size:156 final size:155
Alignment explanation
Indices: 10659068--10659382 Score: 603
Period size: 156 Copynumber: 2.0 Consensus size: 155
10659058 ATAACTTAGA
10659068 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGGTGAAAAGTTAGGGGCAA
1 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGGTGAAAAGTTAGGGGCAA
*
10659133 ATTGGTTATTTTTCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATTT
66 ATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATTT
10659198 ATTTTTCCTGATATAAACCTCGAGC
131 ATTTTTCCTGATATAAACCTCGAGC
10659223 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGTGTGAAAAGTTAGGGGCA
1 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAG-GTGAAAAGTTAGGGGCA
*
10659288 AATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCGAAAATAAACAATGGGAGGTATTAATAATT
65 AATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATT
10659353 TATTTTTCCTGATATAAACCTCGAGC
130 TATTTTTCCTGATATAAACCTCGAGC
10659379 AACT
1 AACT
10659383 AATTCCGGAG
Statistics
Matches: 157, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
155 47 0.30
156 110 0.70
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.31
Consensus pattern (155 bp):
AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGGTGAAAAGTTAGGGGCAA
ATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATTT
ATTTTTCCTGATATAAACCTCGAGC
Found at i:10665589 original size:6 final size:6
Alignment explanation
Indices: 10665578--10665760 Score: 366
Period size: 6 Copynumber: 30.5 Consensus size: 6
10665568 TGATGGTTTG
10665578 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10665626 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10665674 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10665722 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTA
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTA
10665761 ATATTTGGTT
Statistics
Matches: 177, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 177 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:10669055 original size:22 final size:22
Alignment explanation
Indices: 10669027--10669148 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
10669017 TTCCATATCC
10669027 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
10669049 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
10669073 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
10669096 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
10669120 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
10669143 ATCACA
1 ATCACA
10669149 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:10669062 original size:47 final size:46
Alignment explanation
Indices: 10668999--10669541 Score: 566
Period size: 47 Copynumber: 11.4 Consensus size: 46
10668989 CCCTTCGGGA
*
10668999 CTTATCACATTTATACACTTCCATATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTCCATAT-CATCACATTGGCCATTCGGC
10669046 CTTATCACATATATACACTTTCACAT-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-TTC-CATATCATCACATTGGCCATTCGGC
* * *
10669093 CTTATCTCATATATGCATGTTCACAT-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-CTTC-CATATCATCACATTGGCCATTCGGC
* * *
10669140 CTTATCACACATACACATGTTCACAT-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-CTTC-CATATCATCACATTGGCCATTCGGC
* * *
10669187 CTTATCACACATACACATGTTCACAT-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-CTTC-CATATCATCACATTGGCCATTCGGC
* * * *
10669234 CTTATCTCGTATATGCATGTTCACAT-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-CTTC-CATATCATCACATTGGCCATTCGGC
* * *
10669281 CTTATCACACATACACATGTTCACAT-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-CTTC-CATATCATCACATTGGCCATTCGGC
*
10669328 CTTATCACATATATATACACTTTCACAT-TCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACAC-TTC-CATATCATCACATTGGCCATTCGGC
* *
10669377 CTTATCACATATATACACTTTCACAT-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATACAC-TTC-CATATCATCACATTGGCCATTCGGC
* *
10669424 CTTATCACATATATATACACTTTCACAT-TCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACAC-TTC-CATATCATCACATTGGCCATTCGGC
*
10669473 CTTATCACATATATATACACTTTCACAT-TCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACAC-TTC-CATATCATCACATTGGCCATTCGGC
10669522 CTTATCACATATATACACTT
1 CTTATCACATATATACACTT
10669542 TCACATTTAT
Statistics
Matches: 462, Mismatches: 26, Indels: 17
0.91 0.05 0.03
Matches are distributed among these distances:
46 2 0.00
47 316 0.68
48 4 0.01
49 140 0.30
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (46 bp):
CTTATCACATATATACACTTCCATATCATCACATTGGCCATTCGGC
Found at i:10669163 original size:94 final size:94
Alignment explanation
Indices: 10668999--10669548 Score: 779
Period size: 94 Copynumber: 5.8 Consensus size: 94
10668989 CCCTTCGGGA
* *
10668999 CTTATCACATTTATACA-CTTC-CATATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACATGTTCACAT-T-CATCACATTGGCCATTCGGCCTTATCACATATATAC
10669062 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
10669093 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
10669157 TGTTCACATTCATCACATTGGCCATTCGGC
66 T-TTCACATTCATCACATTGGCCATTCGGC
* * * * *
10669187 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCGTATATGCA-
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
10669251 TGTTCACATTCATCACATTGGCCATTCGGC
66 T-TTCACATTCATCACATTGGCCATTCGGC
* *
10669281 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
10669346 ACTTTCACATTCATCACATTGGTCATTCGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
10669377 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATA
* *
10669441 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACTTTCACATTCATCACATTGGCCATTCGGC
*
10669473 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
10669537 CACTTTCACATT
63 CACTTTCACATT
10669549 TATTCAAATA
Statistics
Matches: 420, Mismatches: 27, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.00
94 216 0.51
95 4 0.01
96 151 0.36
97 2 0.00
98 46 0.11
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGC
Found at i:10669253 original size:141 final size:142
Alignment explanation
Indices: 10669026--10669548 Score: 797
Period size: 141 Copynumber: 3.7 Consensus size: 142
10669016 CTTCCATATC
10669026 CATCACATTGGCCATTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATTGGCCATTC
1 CATCACATTGGCCATTCGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTC
10669090 GGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
66 GGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
10669155 CATGTTCACATT
131 CATGTTCACATT
* *
10669167 CATCACATTGGCCATTCGGCCTTATCAC-ACATACACA-TGTTCACATTCATCACATTGGCCATT
1 CATCACATTGGCCATTCGGCCTTATCACAATATATACACT-TTCACATTCATCACATTGGCCATT
*
10669230 CGGCCTTATCTCGTATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
65 CGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
10669295 ACATGTTCACATT
130 ACATGTTCACATT
*
10669308 CATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGTCATT
1 CATCACATTGGCCATTCGGCCTTATCACA-ATATATACACTTTCACATTCATCACATTGGCCATT
* * * * *
10669373 CGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
65 CGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ACA
*
10669437 TATACACT-TTCACATT
127 TACACA-TGTTCACATT
* *
10669453 CATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
1 CATCACATTGGCCATTCGGCCTTATCACA-ATATATACACTTTCACATTCATCACATTGGCCATT
* * *
10669518 AGGCCTTATCACATATATACACT-TTCACATT
65 CGGCCTTATCTCATATATGCA-TGTTCACATT
10669549 TATTCAAATA
Statistics
Matches: 357, Mismatches: 17, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
140 1 0.00
141 164 0.46
143 82 0.23
144 2 0.01
145 107 0.30
146 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (142 bp):
CATCACATTGGCCATTCGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTC
GGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
CATGTTCACATT
Found at i:10671076 original size:56 final size:56
Alignment explanation
Indices: 10671005--10671124 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
10670995 TATTAGTTTA
10671005 TTGCCCATGCCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
10671061 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
10671117 TTGCCCAT
1 TTGCCCAT
10671125 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:10674193 original size:35 final size:35
Alignment explanation
Indices: 10674147--10674220 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
10674137 TGATTTGTAC
* *
10674147 ATCTGTATCTATATCTG-AGATGGGCTTAGGCCCAA
1 ATCTGCATCTATATCTGTA-ATGGGCTTAAGCCCAA
*
10674182 ATCTGCATCTATTTCTGTAATGGGCTTAAGCCCAA
1 ATCTGCATCTATATCTGTAATGGGCTTAAGCCCAA
10674217 ATCT
1 ATCT
10674221 ATATTTGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
35 34 0.97
36 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (35 bp):
ATCTGCATCTATATCTGTAATGGGCTTAAGCCCAA
Found at i:10674681 original size:21 final size:21
Alignment explanation
Indices: 10674657--10674716 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
10674647 TTTGATGATA
10674657 AATACAGAAACATAAGAGTTG
1 AATACAGAAACATAAGAGTTG
* *
10674678 AAT----AAACAT-TGA--TA
1 AATACAGAAACATAAGAGTTG
10674692 AATACAGAAACATAAGAGTTG
1 AATACAGAAACATAAGAGTTG
10674713 AATA
1 AATA
10674717 AACATTTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 14
0.61 0.09 0.30
Matches are distributed among these distances:
14 4 0.14
16 2 0.07
17 6 0.21
18 6 0.21
19 2 0.07
21 8 0.29
ACGTcount: A:0.55, C:0.08, G:0.15, T:0.22
Consensus pattern (21 bp):
AATACAGAAACATAAGAGTTG
Found at i:10674696 original size:35 final size:35
Alignment explanation
Indices: 10674652--10674722 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
10674642 AATGTTTTGA
10674652 TGATAAATACAGAAACATAAGAGTTGAATAAACAT
1 TGATAAATACAGAAACATAAGAGTTGAATAAACAT
10674687 TGATAAATACAGAAACATAAGAGTTGAATAAACAT
1 TGATAAATACAGAAACATAAGAGTTGAATAAACAT
10674722 T
1 T
10674723 TTTGAATTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.54, C:0.08, G:0.14, T:0.24
Consensus pattern (35 bp):
TGATAAATACAGAAACATAAGAGTTGAATAAACAT
Found at i:10677581 original size:14 final size:14
Alignment explanation
Indices: 10677523--10677582 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 14
10677513 AAACAAATAA
10677523 TTTAAAAT-TAATAT
1 TTTAAAATCTAA-AT
10677537 ATTTAAAAATCATAAAT
1 -TTT-AAAATC-TAAAT
*
10677554 TTT-AAAGCTAAAAT
1 TTTAAAATCT-AAAT
10677568 TTTAAAATCTAAAT
1 TTTAAAATCTAAAT
10677582 T
1 T
10677583 CAAATTTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
13 1 0.03
14 16 0.42
15 8 0.21
16 8 0.21
17 2 0.05
18 3 0.08
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (14 bp):
TTTAAAATCTAAAT
Found at i:10678481 original size:18 final size:18
Alignment explanation
Indices: 10678444--10678481 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10678434 AAAAAATAAC
*
10678444 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
10678462 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTT-AAAAT
10678480 AT
1 AT
10678482 ATGGTGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:10678908 original size:13 final size:13
Alignment explanation
Indices: 10678883--10678920 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
10678873 AATTTGGCAA
10678883 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
10678896 TG-TTTTGGAAAAG
1 TGCTTTT-GAAAAG
10678909 TGCTTTTGAAAA
1 TGCTTTTGAAAA
10678921 ATTTGGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.17
13 15 0.65
14 4 0.17
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:10680466 original size:10 final size:10
Alignment explanation
Indices: 10680451--10680486 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
10680441 AATCTGTTAA
10680451 AAAAACAAGT
1 AAAAACAAGT
10680461 AAAAACAAGT
1 AAAAACAAGT
10680471 ATAAAACAAGT
1 A-AAAACAAGT
10680482 AAAAA
1 AAAAA
10680487 AAAAGTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.11
Consensus pattern (10 bp):
AAAAACAAGT
Found at i:10680476 original size:11 final size:11
Alignment explanation
Indices: 10680452--10680497 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
10680442 ATCTGTTAAA
10680452 AAAACAAGTA-
1 AAAACAAGTAT
10680462 AAAACAAGTAT
1 AAAACAAGTAT
*
10680473 AAAACAAGTAA
1 AAAACAAGTAT
*
10680484 AAAAAAAGTAT
1 AAAACAAGTAT
10680495 AAA
1 AAA
10680498 GTTGAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
10 10 0.31
11 22 0.69
ACGTcount: A:0.72, C:0.07, G:0.09, T:0.13
Consensus pattern (11 bp):
AAAACAAGTAT
Found at i:10680477 original size:21 final size:22
Alignment explanation
Indices: 10680452--10680497 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
10680442 ATCTGTTAAA
*
10680452 AAAACAAGT-AAAAACAAGTAT
1 AAAACAAGTAAAAAAAAAGTAT
10680473 AAAACAAGTAAAAAAAAAGTAT
1 AAAACAAGTAAAAAAAAAGTAT
10680495 AAA
1 AAA
10680498 GTTGAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.72, C:0.07, G:0.09, T:0.13
Consensus pattern (22 bp):
AAAACAAGTAAAAAAAAAGTAT
Found at i:10680896 original size:5 final size:5
Alignment explanation
Indices: 10680851--10680883 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
10680841 TATTGTTGAT
10680851 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
10680884 TTTATTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:10680899 original size:13 final size:13
Alignment explanation
Indices: 10680856--10680898 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 13
10680846 TTGATTTTAA
10680856 TTTAATTTAATTT
1 TTTAATTTAATTT
10680869 AATTTAATTTAATTT
1 --TTTAATTTAATTT
*
10680884 TTT-ATTTTATTT
1 TTTAATTTAATTT
10680896 TTT
1 TTT
10680899 TGCAAGGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 11 0.41
13 3 0.11
15 13 0.48
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTAATTTAATTT
Found at i:10681204 original size:16 final size:16
Alignment explanation
Indices: 10681183--10681243 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
10681173 AAAATAGTAT
10681183 AAAAAATAAAATATGA
1 AAAAAATAAAATATGA
***
10681199 AAAAAATATCTTAATG-
1 AAAAAATAAAAT-ATGA
*
10681215 AAAAAATAGAATATGA
1 AAAAAATAAAATATGA
*
10681231 AAAAAATACAATA
1 AAAAAATAAAATA
10681244 AAATACGAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
15 3 0.08
16 30 0.83
17 3 0.08
ACGTcount: A:0.69, C:0.03, G:0.07, T:0.21
Consensus pattern (16 bp):
AAAAAATAAAATATGA
Found at i:10681539 original size:136 final size:134
Alignment explanation
Indices: 10681261--10681766 Score: 790
Period size: 136 Copynumber: 3.8 Consensus size: 134
10681251 AAAAATAGTA
* * * *
10681261 TAAAATAATAT-AAGAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATTTTA
1 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTA
* * * *
10681325 -AAA-ATATA-AACAAAGGGACAAAATTAGGGTTAT-TTAAAAAACACTAAAGTAATACATTTAT
66 GAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAGTAATACATTTAT
10681386 GTAC
131 GTAC
*
10681390 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCGAATATTTTA
1 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTA
10681455 GAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAAAACACTAAAGTAATACATTT
66 GAAATACAAATAATAAAGGGACAAAATTAGGGTTATAT--AAAAAAACACTAAAGTAATACATTT
10681520 ATGTAC
129 ATGTAC
* **
10681526 TAAAATAAGATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCATAATATTTTA
1 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTA
*
10681591 GAAATACAAATAATAAAGGGACAAAATTAGGGTTATAT-AAAAAACACTAAAGTTATACATTTAT
66 GAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAGTAATACATTTAT
10681655 GTAC
131 GTAC
*
10681659 TAAAATATAATATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATT
1 T-AAA-ATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATT
*
10681724 TTAAAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
63 TTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
10681767 GATAAAAAAT
Statistics
Matches: 347, Mismatches: 19, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
129 10 0.03
130 49 0.14
131 3 0.01
132 3 0.01
133 54 0.16
134 4 0.01
135 6 0.02
136 217 0.63
137 1 0.00
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.28
Consensus pattern (134 bp):
TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTA
GAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAGTAATACATTTAT
GTAC
Found at i:10681601 original size:23 final size:23
Alignment explanation
Indices: 10681552--10681606 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
10681542 ATAAAATACA
*
10681552 AAAATAGT-ATATTTTAAAAAAT
1 AAAATAATAATATTTTAAAAAAT
* *
10681574 AAAATCATAATATTTT-AGAAAT
1 AAAATAATAATATTTTAAAAAAT
10681596 ACAAATAATAA
1 A-AAATAATAA
10681607 AGGGACAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAATAATAATATTTTAAAAAAT
Found at i:10681729 original size:97 final size:94
Alignment explanation
Indices: 10681663--10681863 Score: 312
Period size: 97 Copynumber: 2.1 Consensus size: 94
10681653 ATGTACTAAA
*
10681663 ATATAATATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAA
1 ATATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAA
10681728 AAATACAAATAATAAAGGGACAAAATTAGGGTT
65 AAATAC--A-AATAAAGGGACAAAATTAGGGTT
* *
10681761 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
10681826 AATACAAATAATAAAGGGACAAAATTAGGGTT
66 AATAC--A-AATAAAGGGACAAAATTAGGGTT
10681858 ATATAA
1 ATATAA
10681864 AAAAACACTA
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
97 92 0.92
98 8 0.08
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.28
Consensus pattern (94 bp):
ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
AATACAAATAAAGGGACAAAATTAGGGTT
Found at i:10681782 original size:233 final size:232
Alignment explanation
Indices: 10681530--10681998 Score: 836
Period size: 233 Copynumber: 2.0 Consensus size: 232
10681520 ATGTACTAAA
10681530 ATAAGATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCAT-AATATTTTAGAA
1 ATAAGATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATC-TGAATATTTTAGAA
*
10681594 ATACAAATAATAAAGGGACAAAATTAGGGTTATAT-AAAAAACACTAAAGTTATACATTTATGTA
65 ATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGTA
*
10681658 CTAAAATATAATATAAAAAAATAAAATACGAAAATAGTATATTTT-AAAAAATAAAATCCGAATA
130 CT-AAA-ATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATA
*
10681722 TTTTAAAAATACAAATAATAAAGGGACAAAATTAGGGTTAT
192 TTTTAAAAATACAAATAATAAAGGGACAAAATTAGAGTTAT
*
10681763 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
1 ATAAGATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
10681828 TACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGTAC
66 TACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGTAC
10681893 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTT
131 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTT
*
10681958 AGAAATACAAATAATAAAGGGACAAAATTAGAGTTAT
196 AAAAATACAAATAATAAAGGGACAAAATTAGAGTTAT
10681995 ATAA
1 ATAA
10681999 AAAACACTAA
Statistics
Matches: 228, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
231 30 0.13
232 69 0.30
233 99 0.43
234 30 0.13
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.28
Consensus pattern (232 bp):
ATAAGATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
TACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGTAC
TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTT
AAAAATACAAATAATAAAGGGACAAAATTAGAGTTAT
Found at i:10681973 original size:135 final size:136
Alignment explanation
Indices: 10681761--10682133 Score: 671
Period size: 135 Copynumber: 2.8 Consensus size: 136
10681751 AATTAGGGTT
*
10681761 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGA
10681826 AATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGT
66 AATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGT
10681891 ACT-AA
131 ACTAAA
10681896 A-ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAG
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTT-AAAAAATAAAATCCGAATATTTTAG
* *
10681960 AAATACAAATAATAAAGGGACAAAATTAGAGTTATAT-AAAAAACACTAAAGTTATACATTTATG
65 AAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATG
10682024 TACTAAA
130 TACTAAA
*
10682031 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGA
*
10682096 AATAAAAATAATAAAGGGACAAAATTAGGGTTATATAA
66 AATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
10682134 GATAAAAAAT
Statistics
Matches: 228, Mismatches: 6, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
134 67 0.29
135 123 0.54
136 38 0.17
ACGTcount: A:0.57, C:0.06, G:0.09, T:0.28
Consensus pattern (136 bp):
ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGA
AATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGT
ACTAAA
Found at i:10682079 original size:367 final size:368
Alignment explanation
Indices: 10681394--10682333 Score: 1717
Period size: 367 Copynumber: 2.6 Consensus size: 368
10681384 ATGTACTAAA
10681394 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAAT-TCGAATATTTTAGAA
1 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCT-GAATATTTTAGAA
*
10681458 ATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAAAACACTAAAGTAATACATTTATG
65 ATACAAATAATAAAGGGACAAAATTAGGGTTATAT--AAAAAAACACTAAAGTTATACATTTATG
*
10681523 TACTAAAATAAGATAAAAAATAAAATACAAAAATAGTATATTTT-AAAAAATAAAATCATAATAT
128 TACTAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCATAATAT
*
10681587 TTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAACACTAAAGTTATACATT
193 TTTAGAAATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATT
*
10681652 TATGTACTAAAATATAATATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCC
258 TATGTACTAAAATATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCC
*
10681717 GAATATTTTAAAAATACAAATAATAAAGGGACAAAATTAGGGTTAT
323 GAATATTTTAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
10681763 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
1 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
*
10681828 TACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGTAC
66 TACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAGTTATACATTTATGTAC
**
10681893 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTT
131 TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCATAATATTTT
10681958 AGAAATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATTTAT
196 AGAAATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATTTAT
10682023 GTACTAAAATATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAA
261 GTACTAAAATATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAA
10682087 TATTTTAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
326 TATTTTAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
* *
10682130 ATAAGATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGAAA
1 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
*
10682195 TACAAATAATAAAGGGAC-AAATTAGGGTTATATAAAAAAACACTAAAGTTATACATTTATGTAT
66 TACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAGTTATACATTTATGTAC
10682259 TAAAATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCATAATATTT
131 TAAAATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCATAATATTT
10682324 TAGAAATACA
195 TAGAAATACA
10682334 CCTATTCAAT
Statistics
Matches: 554, Mismatches: 14, Indels: 8
0.96 0.02 0.01
Matches are distributed among these distances:
366 55 0.10
367 300 0.54
368 101 0.18
369 97 0.18
370 1 0.00
ACGTcount: A:0.57, C:0.06, G:0.09, T:0.28
Consensus pattern (368 bp):
ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
TACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAGTTATACATTTATGTAC
TAAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCATAATATTTT
AGAAATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATTTAT
GTACTAAAATATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAA
TATTTTAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
Found at i:10682148 original size:97 final size:96
Alignment explanation
Indices: 10682031--10682229 Score: 362
Period size: 97 Copynumber: 2.1 Consensus size: 96
10682021 ATGTACTAAA
10682031 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
10682096 AATAAAAATAATAAAGGGACAAAATTAGGGTT
66 AATAAAAATAATAAAGGGAC-AAATTAGGGTT
* *
10682128 ATATAAGATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
*
10682193 AATACAAATAATAAAGGGACAAATTAGGGTT
66 AATAAAAATAATAAAGGGACAAATTAGGGTT
10682224 ATATAA
1 ATATAA
10682230 AAAAACACTA
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 17 0.17
97 82 0.83
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.28
Consensus pattern (96 bp):
ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
AATAAAAATAATAAAGGGACAAATTAGGGTT
Found at i:10682173 original size:232 final size:233
Alignment explanation
Indices: 10681897--10682331 Score: 761
Period size: 232 Copynumber: 1.9 Consensus size: 233
10681887 ATGTACTAAA
10681897 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
1 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
10681962 ATACAAATAATAAAGGGACAAAATTAGAGTTATAT-AAAAAACACTAAAGTTATACATTTATGTA
66 ATACAAATAATAAAGGGAC-AAATTAGAGTTATATAAAAAAACACTAAAGTTATACATTTATGTA
*
10682026 CTAAAATATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTT-AAAAAATAAAATCCGAATA
130 -TAAAA-ATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCAGAATA
10682089 TTTTAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
193 TTTTAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
*
10682130 ATAAGATAAAAAATAAAATATGAAAATAGTATATTTT-AAAAAATAAAATCCGAATATTTTAGAA
1 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
*
10682194 ATACAAATAATAAAGGGACAAATTAGGGTTATATAAAAAAACACTAAAGTTATACATTTATGTAT
66 ATACAAATAATAAAGGGACAAATTAGAGTTATATAAAAAAACACTAAAGTTATACATTTATGTAT
* *
10682259 TAAAATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCATAATATTT
131 AAAAATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCAGAATATTT
*
10682324 TAGAAATA
196 TAAAAATA
10682332 CACCTATTCA
Statistics
Matches: 193, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
230 7 0.04
231 48 0.25
232 102 0.53
233 36 0.19
ACGTcount: A:0.58, C:0.05, G:0.09, T:0.28
Consensus pattern (233 bp):
ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
ATACAAATAATAAAGGGACAAATTAGAGTTATATAAAAAAACACTAAAGTTATACATTTATGTAT
AAAAATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCAGAATATTT
TAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
Found at i:10684325 original size:12 final size:12
Alignment explanation
Indices: 10684310--10684343 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10684300 GCCGATATAG
10684310 AGCCCGATCCAC
1 AGCCCGATCCAC
*
10684322 AGCCCGATCTAC
1 AGCCCGATCCAC
*
10684334 AGCCAGATCC
1 AGCCCGATCC
10684344 CGAGCTTGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.44, G:0.18, T:0.12
Consensus pattern (12 bp):
AGCCCGATCCAC
Found at i:10688266 original size:124 final size:123
Alignment explanation
Indices: 10688062--10688302 Score: 421
Period size: 124 Copynumber: 1.9 Consensus size: 123
10688052 TATTATAATA
*
10688062 TGTTATATTTAAAAATAACAAAAAAAATACCTTTAATTTTTTCTTCTCCTTCTTTCTCCCTCTCT
1 TGTTATATTTAAAAATAAAAAAAAAAATACCTTTAA--TTTTCTTCTCCTTCTTTCTCCCTCTCT
*
10688127 TCTCTTCTGTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTTATTTTTTTCAGAAAATC
64 TCTCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTT-TTTTTTTCAGAAAATC
10688188 TGTTATATTTAAAAATAAGAAAAAAAAATACCTTTAA-TTTCTTCTCCTTCTTTCTCCCTCTCTT
1 TGTTATATTTAAAAATAA-AAAAAAAAATACCTTTAATTTTCTTCTCCTTCTTTCTCCCTCTCTT
10688252 CTCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTTTTTTTTTC
65 CTCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTTTTTTTTTC
10688303 TTTTGTTCTC
Statistics
Matches: 112, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
123 8 0.07
124 69 0.62
126 18 0.16
127 17 0.15
ACGTcount: A:0.24, C:0.20, G:0.03, T:0.53
Consensus pattern (123 bp):
TGTTATATTTAAAAATAAAAAAAAAAATACCTTTAATTTTCTTCTCCTTCTTTCTCCCTCTCTTC
TCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTTTTTTTTTCAGAAAATC
Found at i:10688498 original size:26 final size:27
Alignment explanation
Indices: 10688460--10688516 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
10688450 AAGACCAATA
* *
10688460 TTTTATTATTTTTTTCAGATTC-ATTT
1 TTTTAATAGTTTTTTCAGATTCAATTT
10688486 TTTTAATAGTTTTTTCAGATTCAATTT
1 TTTTAATAGTTTTTTCAGATTCAATTT
10688513 TTTT
1 TTTT
10688517 TAACAGATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (27 bp):
TTTTAATAGTTTTTTCAGATTCAATTT
Found at i:10690769 original size:228 final size:225
Alignment explanation
Indices: 10690361--10691709 Score: 1066
Period size: 228 Copynumber: 5.9 Consensus size: 225
10690351 ATTCAAATAG
* * * * *
10690361 ATGCAAATTTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTT-GAGGTGGAAAGCTCCGACA
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACCATCA-CCTTGGAGGTTGAAAGCTCAGACA
* * * * * *
10690425 CCATCGATAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCACCAAATCAACAGAGGCTT
65 CCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCC-CCAGACCAACAGAGG-TT
** * * * * * * * *
10690490 -ATCTTTGCTAGTAAGCAGCTAGAATATGGTCGTACACTTGCTGACTACAACATTCAGAAGGAGT
128 GATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAAT
* *
10690554 CCACCCTGCACTTGGTCCTTCGTTTGAGGAGTGGT
193 CCACCCTCCATTTGGTCCTTCGTTTG-GG-GTGGT
* * * * * *
10690589 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATCACCCTT-GAGGTGGAAAGCTCGGACA
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACCATCA-CCTTGGAGGTTGAAAGCTCAGACA
* * * *
10690653 CCATTGATAATGTCAAGGCCAAGATCCAAGACAAATAAGGGATCCCTCCAGACCAGCAGAGGCTT
65 CCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCC-CCAGACCAACAGAGG-TT
* * * * *
10690718 -ATCTTTGCCGGTAAGCAACTAGAAGATGGTCGTACCCTGGCTGATTACAACATCCAAAAGGATT
128 GATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAAT
* * * * * *
10690782 CCACCCTCCATTTGGTGCTCCGCCTTCGTGGAGGA
193 CCACCCTCCATTTGGTCCTTCG--TTTGGGGTGGT
* * * * * * * * *
10690817 ATGCAAATCTTTGTTAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
* * * ** *
10690882 CATTGACAATGTCAAGGCTAAGATCCAGGAT-AAGGAGGGTATTCGGCCAGACCAGCAGAGGTTG
66 CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGG-A-TCCCCCAGACCAACAGAGGTTG
* * *
10690946 ATCTTTGCTGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACATCATCCAAAAGGAATC
129 ATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAATC
*
10691011 CACCCTCTATTTGGTGCTTCGTCTCCGTGGTGGTATGCAAATGTGGTGGT
194 CACCCTCCATTTGGT-C--C-T-T-C---GT--T-TG-----G-GGTGGT
* * * * * * * *
10691061 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
* * *
10691126 CATTGACAATGTCAAGGCTAAGATCCAGGACAAAG-AGGGTATTCCCCCAGACCAACAGAGGTTG
66 CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGG-A-TCCCCCAGACCAACAGAGGTTG
* * * *
10691190 ATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAAAAGGAATC
129 ATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAATC
* * *
10691255 CACCCTCCACTTGGTGCTTCGTCTTTGTGGTGGT
194 CACCCTCCATTTGGTCCTTCG--TTTGGGGTGGT
* * * * * * * * *
10691289 ATGCAGATTTTTGTGAAGACTCTTACCAGGAAA-ACGATCACCTTGGAAGTTGAGAGTTCTGACA
1 ATGCAAATTTTTGTTAAGACCCTGACC-GGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACA
* * * * * *
10691353 CTATTGACAATGTCAAGGCCAAAATCCAGGATAAGGAAAGTATCCCTCCAGACCAACAGAGGTTG
65 CCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCC-CCAGACCAACAGAGGTTG
* * * * * * * *
10691418 AT-TTTCGCGGGTAAGCAGCTTG-AGAATGGCAGGACACTTGCAGACTACAACAT-TAAAAGGAA
129 ATCTTT-GCCGGTAAGCAACTAGAAG-ATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAA
* * * *
10691480 TCGACCCTCCATTTGGTTCTTCGTCTTCGTGGTGGG
192 TCCACCCTCCATTTGGTCCTTCGT-TT-GGGGTGGT
* ** * * * * *
10691516 ATGCAAATTTTTGTGAAGACATTGACAGGAAAGACCATCACTTTGGAAGTTGAAAGCTCGGACAT
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
* * * * * *
10691581 TATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCTAGACCAGCAGAGGTTGA
66 CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCCCC-AGACCAACAGAGGTTGA
* * * ** * *
10691646 TCTTTGCAGGGAAGCAACTTGAAGATGGAAGGAC-CTTGGCAGACTACAACATCCAGAAA-GAAT
130 TCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACAC-TGGCTGACTACAACATCCA-AAAGGAAT
10691709 C
193 C
10691710 GACTCTGCAC
Statistics
Matches: 943, Mismatches: 137, Indels: 82
0.81 0.12 0.07
Matches are distributed among these distances:
225 1 0.00
226 10 0.01
227 196 0.21
228 510 0.54
229 13 0.01
230 3 0.00
231 1 0.00
232 1 0.00
234 3 0.00
235 3 0.00
237 3 0.00
238 2 0.00
239 1 0.00
240 1 0.00
241 1 0.00
244 191 0.20
245 3 0.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (225 bp):
ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCCCCAGACCAACAGAGGTTGAT
CTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAATCCA
CCCTCCATTTGGTCCTTCGTTTGGGGTGGT
Found at i:10691056 original size:16 final size:16
Alignment explanation
Indices: 10691037--10691068 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10691027 CTTCGTCTCC
10691037 GTGGTGGTATGCAAAT
1 GTGGTGGTATGCAAAT
10691053 GTGGTGGTATGCAAAT
1 GTGGTGGTATGCAAAT
10691069 ATTTGTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.38, T:0.31
Consensus pattern (16 bp):
GTGGTGGTATGCAAAT
Found at i:10691246 original size:244 final size:243
Alignment explanation
Indices: 10690817--10691523 Score: 835
Period size: 244 Copynumber: 3.0 Consensus size: 243
10690807 TCGTGGAGGA
* *
10690817 ATGCAAATCTTTGTTAAGAC-CTTGACAGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATA
1 ATGCAAATATTTGTTAAGACTCTT-ACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATA
** *
10690881 CCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCGGCCAGACCAGCAGAGGTTG
65 CCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAACAGAGGTTG
* * * * *
10690946 ATCTTTGCTGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACATCATCCAAAAGGAATC
130 ATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAATC
*
10691011 CACCCTCTATTTGGTGCTTCGTCTCCGTGGTGGTATGCAAATGTGGTGGT
195 CACCCTCCATTTGGTGCTTCGTCT-CGTGGTGGTATGCAAATGTGGTGGT
*
10691061 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATAC
* *
10691126 CATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAACAGAGGTTGA
66 CATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAACAGAGGTTGA
* *
10691191 TCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAAAAGGAATCC
131 TCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAATCC
*
10691256 ACCCTCCACTTGGTGCTTCG--TC-------T-T-----TGTGGTGGT
196 ACCCTCCATTTGGTGCTTCGTCTCGTGGTGGTATGCAAATGTGGTGGT
* * * * * * * * *
10691289 ATGCAGATTTTTGTGAAGACTCTTACCAGGAAA-ACGATCACCTTGGAAGTTGAGAGTTCTGACA
1 ATGCAAATATTTGTTAAGACTCTTACC-GGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATA
* * * **
10691353 CTATTGACAATGTCAAGGCCAAAATCCAGGATAAGGAAAGTA-TCCCTCCAGACCAACAGAGGTT
65 CCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCC-CCAGACCAACAGAGGTT
* * * * * * *
10691417 GAT-TTTCGCGGGTAAGCAGCTTG-AGAATGGCAGGACACTTGCAGACTACAACAT-TAAAAGGA
129 GATCTTT-GCCGGTAAGCAACTTGAAG-ATGGCCGCACACTCGCTGACTACAACATCCAAAAGGA
* * *
10691479 ATCGACCCTCCATTTGGTTCTTCGTCTTCGTGGTGGGATGCAAAT
192 ATCCACCCTCCATTTGGTGCTTCGTC-TCGTGGTGGTATGCAAAT
10691524 TTTTGTGAAG
Statistics
Matches: 397, Mismatches: 45, Indels: 43
0.82 0.09 0.09
Matches are distributed among these distances:
227 37 0.09
228 149 0.38
229 5 0.01
230 2 0.01
233 1 0.00
234 1 0.00
238 1 0.00
241 1 0.00
242 1 0.00
243 1 0.00
244 195 0.49
245 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (243 bp):
ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATAC
CATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAACAGAGGTTGA
TCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAATCC
ACCCTCCATTTGGTGCTTCGTCTCGTGGTGGTATGCAAATGTGGTGGT
Found at i:10691600 original size:227 final size:226
Alignment explanation
Indices: 10691053--10691709 Score: 788
Period size: 227 Copynumber: 2.9 Consensus size: 226
10691043 GTATGCAAAT
* * * * *
10691053 GTGGTGGTATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGT
1 GTGGTGGTATGCAAATTTTTGTGAAGACTCTTACAGGAAAGACCATCACTTTGGAAGTTGAGAGT
* * * * * *
10691118 TCAGATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAACA
66 TCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTA-TCCCCCAGACCAACA
* * * * * *
10691183 GAGGTTGATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAAA
130 GAGGTTGATCTTTGCGGGTAAGCAACTTGAAGATGGCAGGAC-CTTGCAGACTACAACATCCAAA
*
10691248 AGGAATCCACCCTCCACTTGGTGCTTCGTCTTT
194 AGGAATCCACCCTCCACTTGGTGCTTCGTCTTC
* * *
10691281 GTGGTGGTATGCAGATTTTTGTGAAGACTCTTACCAGGAAA-ACGATCACCTTGGAAGTTGAGAG
1 GTGGTGGTATGCAAATTTTTGTGAAGACTCTTA-CAGGAAAGACCATCACTTTGGAAGTTGAGAG
* * *
10691345 TTCTGACACTATTGACAATGTCAAGGCCAAAATCCAGGATAAGGAAAGTATCCCTCCAGACCAAC
65 TTCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCC-CCAGACCAAC
* *
10691410 AGAGGTTGAT-TTTCGCGGGTAAGCAGCTTG-AGAATGGCAGGACACTTGCAGACTACAACAT-T
129 AGAGGTTGATCTTT-GCGGGTAAGCAACTTGAAG-ATGGCAGGAC-CTTGCAGACTACAACATCC
* * *
10691472 AAAAGGAATCGACCCTCCATTTGGTTCTTCGTCTTC
191 AAAAGGAATCCACCCTCCACTTGGTGCTTCGTCTTC
* * *
10691508 GTGGTGGGATGCAAATTTTTGTGAAGACAT-TGACAGGAAAGACCATCACTTTGGAAGTTGAAAG
1 GTGGTGGTATGCAAATTTTTGTGAAGAC-TCTTACAGGAAAGACCATCACTTTGGAAGTTGAGAG
* * * * * * * *
10691572 CTCGGACATTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCTAGACCAGC
65 TTCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCC-AGACCAAC
*
10691637 AGAGGTTGATCTTTGCAGGG-AAGCAACTTGAAGATGGAAGGACCTTGGCAGACTACAACATCCA
129 AGAGGTTGATCTTTGC-GGGTAAGCAACTTGAAGATGGCAGGACCTT-GCAGACTACAACATCCA
10691701 GAAA-GAATC
192 -AAAGGAATC
10691710 GACTCTGCAC
Statistics
Matches: 367, Mismatches: 49, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
226 12 0.03
227 185 0.50
228 161 0.44
229 9 0.02
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (226 bp):
GTGGTGGTATGCAAATTTTTGTGAAGACTCTTACAGGAAAGACCATCACTTTGGAAGTTGAGAGT
TCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCAGACCAACAG
AGGTTGATCTTTGCGGGTAAGCAACTTGAAGATGGCAGGACCTTGCAGACTACAACATCCAAAAG
GAATCCACCCTCCACTTGGTGCTTCGTCTTC
Found at i:10692788 original size:17 final size:18
Alignment explanation
Indices: 10692749--10692791 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
10692739 GCTCCTATTG
10692749 TCTTTTTTCTTTCCTCTCC
1 TCTTTTTTCTTTCCTCT-C
* *
10692768 TCTTTTTTTTTTGCTCT-
1 TCTTTTTTCTTTCCTCTC
10692785 TCTTTTT
1 TCTTTTT
10692792 CTCCCCCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
19 15 0.68
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (18 bp):
TCTTTTTTCTTTCCTCTC
Found at i:10695833 original size:26 final size:26
Alignment explanation
Indices: 10695804--10695908 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
10695794 TGGTACAAAT
10695804 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
10695830 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10695856 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
10695882 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10695908 T
1 T
10695909 AATGGGCATT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10697635 original size:27 final size:27
Alignment explanation
Indices: 10697485--10697642 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
10697475 AGGAAGCGTC
*
10697485 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
10697512 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
10697539 CT-GTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
10697565 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
10697592 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
10697619 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
10697643 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
25 1 0.01
26 30 0.26
27 82 0.71
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:10697642 original size:53 final size:54
Alignment explanation
Indices: 10697482--10697624 Score: 245
Period size: 53 Copynumber: 2.7 Consensus size: 54
10697472 TGGAGGAAGC
10697482 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
10697536 GTCCT-GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
10697589 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
10697625 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
53 58 0.68
54 27 0.32
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:10700690 original size:24 final size:24
Alignment explanation
Indices: 10700645--10700691 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10700635 AGGACTGTAA
**
10700645 AGGAGTTCCAAGATATTTTTCCGG
1 AGGAGTTCCAAGATATGCTTCCGG
10700669 AGGAGCTTCCAAGAT-TGCTTCCG
1 AGGAG-TTCCAAGATATGCTTCCG
10700692 AACCGAGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (24 bp):
AGGAGTTCCAAGATATGCTTCCGG
Found at i:10703858 original size:26 final size:26
Alignment explanation
Indices: 10703829--10703936 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
10703819 TGGTACAAAT
10703829 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
10703855 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10703881 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
10703907 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10703933 TGAT
1 TGAT
10703937 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10705554 original size:27 final size:26
Alignment explanation
Indices: 10705514--10705654 Score: 151
Period size: 27 Copynumber: 5.2 Consensus size: 26
10705504 AGGAAGTGTC
10705514 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTATGCCA-AATTATCTGAT
* *
10705541 CTGGTGGCTTTGCCACATATATCTG-T
1 CTGGTGGCTATGCCAAAT-TATCTGAT
10705567 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCA-AATTATCTGAT
* * *
10705595 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAAAT-TATCTGAT
*
10705622 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCA-AATTATCTG-AT
10705649 CTGGTG
1 CTGGTG
10705655 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 9, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTATGCCAAATTATCTGAT
Found at i:10705592 original size:54 final size:54
Alignment explanation
Indices: 10705510--10705672 Score: 240
Period size: 54 Copynumber: 3.0 Consensus size: 54
10705500 ATGGAGGAAG
*
10705510 TGTCCTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTTTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATC
*
10705564 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATC
* * * * *
10705618 TGTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTCGTCACA-ATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTTTGCCACATATATC
10705671 TG
1 TG
10705673 GCAGCCTCGC
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 13 0.13
54 87 0.87
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATC
Found at i:10705665 original size:27 final size:27
Alignment explanation
Indices: 10705514--10705672 Score: 145
Period size: 27 Copynumber: 5.9 Consensus size: 27
10705504 AGGAAGTGTC
*
10705514 CTGGTGGCTAT-GCCATAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
* *
10705541 CTGGTGGCTTTGCCACATATATCTGT-C
1 CTGGTGGCTTCGCCACA-ATATCTGTAT
10705568 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
10705595 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
10705622 CTGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
10705649 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
10705673 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 5, Indels: 24
0.80 0.03 0.17
Matches are distributed among these distances:
25 1 0.01
26 10 0.09
27 99 0.86
28 5 0.04
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:10705666 original size:81 final size:80
Alignment explanation
Indices: 10705514--10705672 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
10705504 AGGAAGTGTC
* * *
10705514 CTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
10705579 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
10705595 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
10705658 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
10705673 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 17 0.25
81 51 0.75
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:10708204 original size:84 final size:84
Alignment explanation
Indices: 10707934--10708206 Score: 222
Period size: 84 Copynumber: 3.2 Consensus size: 84
10707924 CATATAAACA
10707934 CATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTACTAAAC
1 CATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTACTAAAC
10707999 ATTTAATACATCAAAGTTT
66 ATTTAATACATCAAAGTTT
** * * ** *
10708018 CATATAATA-TCATTCACAACCAAAAT-ACCAA-AACATGAC-CATTAACATAACATCCTATATT
1 CATATAA-AGTCATT--CAA--AACTTGACCAACATCAT--CTCATTACCAT-GTAT-C-A-AAT
* * * * * * **
10708079 CAAGT-CAAAATATGCTATTACCT-AAA--CA
55 -ACGTACTAAACAT-TTAATACATCAAAGTTT
10708107 CATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTACTAAAC
1 CATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTACTAAAC
10708172 ATTTAATACATCAAAGTTT
66 ATTTAATACATCAAAGTTT
10708191 CATATAATA-TCATTCA
1 CATATAA-AGTCATTCA
10708207 CAACCAAAAT
Statistics
Matches: 137, Mismatches: 30, Indels: 44
0.65 0.14 0.21
Matches are distributed among these distances:
81 9 0.07
82 11 0.08
83 1 0.01
84 27 0.20
85 8 0.06
86 20 0.15
87 20 0.15
88 7 0.05
89 13 0.09
90 1 0.01
91 11 0.08
92 9 0.07
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.30
Consensus pattern (84 bp):
CATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTACTAAAC
ATTTAATACATCAAAGTTT
Found at i:10708217 original size:173 final size:173
Alignment explanation
Indices: 10707928--10708250 Score: 646
Period size: 173 Copynumber: 1.9 Consensus size: 173
10707918 GGCATTCATA
10707928 TAAACACATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTA
1 TAAACACATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTA
10707993 CTAAACATTTAATACATCAAAGTTTCATATAATATCATTCACAACCAAAATACCAAAACATGACC
66 CTAAACATTTAATACATCAAAGTTTCATATAATATCATTCACAACCAAAATACCAAAACATGACC
10708058 ATTAACATAACATCCTATATTCAAGTCAAAATATGCTATTACC
131 ATTAACATAACATCCTATATTCAAGTCAAAATATGCTATTACC
10708101 TAAACACATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTA
1 TAAACACATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTA
10708166 CTAAACATTTAATACATCAAAGTTTCATATAATATCATTCACAACCAAAATACCAAAACATGACC
66 CTAAACATTTAATACATCAAAGTTTCATATAATATCATTCACAACCAAAATACCAAAACATGACC
10708231 ATTAACATAACATCCTATAT
131 ATTAACATAACATCCTATAT
10708251 ACATGCCACA
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
173 150 1.00
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (173 bp):
TAAACACATATAAAGTCATTCAAAACTTGACCAACATCATCTCATTACCATGTATCAAATACGTA
CTAAACATTTAATACATCAAAGTTTCATATAATATCATTCACAACCAAAATACCAAAACATGACC
ATTAACATAACATCCTATATTCAAGTCAAAATATGCTATTACC
Found at i:10711101 original size:3 final size:3
Alignment explanation
Indices: 10711087--10711540 Score: 81
Period size: 3 Copynumber: 150.3 Consensus size: 3
10711077 AATAGGACGG
* * * * *
10711087 ATA ATA AAA ATA ATA GTA ATG ATA ATA ATA A-A TATA ATG GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * * * * *
10711132 ATA TTA A-A A-A ATTA AT- ATA ATG ATG ATA ATA GTG TTA A-A A-A
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * **
10711173 ATA ATA ATA ATA A-A CA-A ACGA CATA TTA ATG ATA ATA GATA ATA ACG
1 ATA ATA ATA ATA ATA -ATA A-TA -ATA ATA ATA ATA ATA -ATA ATA ATA
*
10711220 ATA ATA ATA ATGGA AGTA ATGA A-A ATA ATA ATA ATA GA-A ACA ATA
1 ATA ATA ATA AT--A A-TA AT-A ATA ATA ATA ATA ATA -ATA ATA ATA
* * * *
10711265 GTA ATA A-A AGTA ATA ATA A-A ATA GAAA ATA ACA ATG ATA CATTA ATA
1 ATA ATA ATA A-TA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -A-TA ATA
* * * * *
10711312 ATA ATA AT- ATA CGTG CTA ATA ATA ATA ACA AT- ATA A-A AAA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
10711355 ATA CT- ATA TTA ATA AAA ATA ATA ATA GTA GGTTA ATA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA
* ** * * *
10711401 ATA AAA AGGTA A-A A-A ATA ATA AGG A-A ATA ATA AAA ATA CTA TTA
1 ATA ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
10711445 CATTA CTA CTA CTA CTA ATA ATA ATA ATA A-A GCA-A ACA GTA ATA AT-
1 -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA
* * * *
10711491 ATA TAGA ATA ATA GTA A-A AGTA ATA ATA ATA ATA ATA ATA TTA AAA
1 ATA -ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
10711537 ATA A
1 ATA A
10711541 CACTCTCCCC
Statistics
Matches: 328, Mismatches: 79, Indels: 88
0.66 0.16 0.18
Matches are distributed among these distances:
2 38 0.12
3 252 0.77
4 26 0.08
5 11 0.03
6 1 0.00
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:10711377 original size:23 final size:23
Alignment explanation
Indices: 10711344--10711403 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
10711334 TAATAACAAT
*
10711344 ATAAAAA-AATAATACTATATTA
1 ATAAAAATAATAATACTAGATTA
* *
10711366 ATAAAAATAATAATAGTAGGTTA
1 ATAAAAATAATAATACTAGATTA
* *
10711389 ATAATAATAGTAATA
1 ATAAAAATAATAATA
10711404 AAAAGGTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 7 0.22
23 25 0.78
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (23 bp):
ATAAAAATAATAATACTAGATTA
Found at i:10711527 original size:27 final size:27
Alignment explanation
Indices: 10711460--10711536 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
10711450 CTACTACTAC
*
10711460 TAATAATAATAATAA-AGCAAACAGTAA
1 TAATAATAATAATAATAGTAAA-AGTAA
*
10711487 TAAT-ATATAGAATAATAGTAAAAGTAA
1 TAATAATA-ATAATAATAGTAAAAGTAA
*
10711514 TAATAATAATAATAATATTAAAA
1 TAATAATAATAATAATAGTAAAA
10711537 ATAACACTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.07
27 32 0.74
28 8 0.19
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (27 bp):
TAATAATAATAATAATAGTAAAAGTAA
Found at i:10711834 original size:24 final size:26
Alignment explanation
Indices: 10711807--10711859 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
10711797 ATCTCGTGTA
*
10711807 TTTCTTGTATT-GAAAGTCTCT-CTT
1 TTTCTTGTATTCGAAACTCTCTCCTT
*
10711831 TTTCTTGTATTCGAATCTCTCTCCTT
1 TTTCTTGTATTCGAAACTCTCTCCTT
10711857 TTT
1 TTT
10711860 TCTCCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 8 0.32
26 6 0.24
ACGTcount: A:0.13, C:0.21, G:0.09, T:0.57
Consensus pattern (26 bp):
TTTCTTGTATTCGAAACTCTCTCCTT
Found at i:10711858 original size:25 final size:24
Alignment explanation
Indices: 10711807--10711858 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
10711797 ATCTCGTGTA
* *
10711807 TTTCTTGTATTGAAAGTCTCTCTT
1 TTTCTTGTATTGAAACTCTCTCCT
*
10711831 TTTCTTGTATTCGAATCTCTCTCCT
1 TTTCTTGTATT-GAAACTCTCTCCT
10711856 TTT
1 TTT
10711859 TTCTCCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.13, C:0.21, G:0.10, T:0.56
Consensus pattern (24 bp):
TTTCTTGTATTGAAACTCTCTCCT
Found at i:10711991 original size:24 final size:24
Alignment explanation
Indices: 10711959--10712004 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
10711949 TCTTTTTGCA
10711959 GGCAAGTAGGGTGATGGAGTTAAT
1 GGCAAGTAGGGTGATGGAGTTAAT
10711983 GGCAAGTAGGGTGATGGAGTTA
1 GGCAAGTAGGGTGATGGAGTTA
10712005 GTGGTTGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.04, G:0.43, T:0.24
Consensus pattern (24 bp):
GGCAAGTAGGGTGATGGAGTTAAT
Done.