Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 38 of 349
Found at i:10712561 original size:177 final size:176
Alignment explanation
Indices: 10712295--10712642 Score: 516
Period size: 177 Copynumber: 2.0 Consensus size: 176
10712285 GAGAAGAGAT
* * *
10712295 TTGTAGCTTGAAGCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATTTACTCCA
1 TTGTAGCTTGAACCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTACGCCA
* * * * *
10712360 TTGTCGCTACATGGAGATAAGATTCGCCCTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAG
66 TTGCCACTACATGAAGATAAGATTCGCCCTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAG
10712425 ATCTACAATTTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGAC
131 ATCTACAATTTTCAGTCTGCTCCACTGCAAC-TCAAGGAGATAAGAC
* * * * *
10712472 TTGTATCTTGAACCTGCTCTACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCGCCA
1 TTGTAGCTTGAACCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTACGCCA
* **
10712537 TTGCCACTACATGAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGGTTAGAGAGATAAG
66 TTGCCACTACATGAAGATAAGATTCGCCCTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAG
* * *
10712602 ATCTGCAATTTTCAGTCTGCTTCACTGCAACTCAGGGAGAT
131 ATCTACAATTTTCAGTCTGCTCCACTGCAACTCAAGGAGAT
10712643 GAGGCTAGTA
Statistics
Matches: 152, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
176 9 0.06
177 143 0.94
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (176 bp):
TTGTAGCTTGAACCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTACGCCA
TTGCCACTACATGAAGATAAGATTCGCCCTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAG
ATCTACAATTTTCAGTCTGCTCCACTGCAACTCAAGGAGATAAGAC
Found at i:10712775 original size:220 final size:220
Alignment explanation
Indices: 10712549--10712953 Score: 569
Period size: 220 Copynumber: 1.8 Consensus size: 220
10712539 GCCACTACAT
* *
10712549 GAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGGTTAGAGAGATAAGATCTGCAATT-T
1 GAAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGGTTAGAGAGATAAAATCTGCAATTAT
* * * * *
10712613 TCAGTCTGCTTCACTGCAACTCAGGGAGATGAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCT
66 T-AGCCCGCTCCACTACAACTCAGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCT
* * *
10712678 CGGGAAGATAAGATTCACCATCTTCGATCTGTTTCACTACTGCTTAGGGAGATAAGGCTAGTGGT
130 CGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGT
10712743 TTAAATCTGCTTCCCTAGTACCTCGG
195 TTAAATCTGCTTCCCTAGTACCTCGG
* * * *
10712769 GAAGATAATATTCGCCATCTTCGATCTGCTCCACTACTGTTTAGAGAGATAAAATCTGTAATTAT
1 GAAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGGTTAGAGAGATAAAATCTGCAATTAT
* ** * * * *
10712834 TAGCCCGCTCCGCTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
66 TAGCCCGCTCCACTACAACTCAGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTC
*** *
10712899 GAGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
131 GAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
10712954 ATCTGCAATC
Statistics
Matches: 159, Mismatches: 25, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
220 157 0.99
221 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (220 bp):
GAAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGGTTAGAGAGATAAAATCTGCAATTAT
TAGCCCGCTCCACTACAACTCAGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTC
GAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGTT
TAAATCTGCTTCCCTAGTACCTCGG
Found at i:10712797 original size:45 final size:45
Alignment explanation
Indices: 10712659--10712806 Score: 122
Period size: 45 Copynumber: 3.3 Consensus size: 45
10712649 AGTAGCCTAA
*
10712659 ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATCTTCG
1 ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
* * * * * ** * *** **
10712704 ATCTGTTTCACTACTGCTTAGGG-AGATAAGGCTAGTGGT-TTAA
1 ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
* *
10712747 ATCTGCTTCCCTAGTACCTCGGGAAGATAATATTCGCCATCTTCG
1 ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
10712792 ATCTGC-TCCACTACT
1 ATCTGCTTCC-CTACT
10712807 GTTTAGAGAG
Statistics
Matches: 70, Mismatches: 30, Indels: 6
0.66 0.28 0.06
Matches are distributed among these distances:
43 19 0.27
44 21 0.30
45 30 0.43
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (45 bp):
ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
Found at i:10712806 original size:88 final size:88
Alignment explanation
Indices: 10712635--10712820 Score: 273
Period size: 88 Copynumber: 2.1 Consensus size: 88
10712625 ACTGCAACTC
*
10712635 AGGGAGATGAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
1 AGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
* *
10712700 TTCGATCTGTTTCACTACTGCTT
66 TTCGATCTGCTCCACTACTGCTT
* ** * * *
10712723 AGGGAGATAAGGCTAGTGGTTTAAATCTGCTTCCCTAGTACCTCGGGAAGATAATATTCGCCATC
1 AGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
*
10712788 TTCGATCTGCTCCACTACTGTTT
66 TTCGATCTGCTCCACTACTGCTT
*
10712811 AGAGAGATAA
1 AGGGAGATAA
10712821 AATCTGTAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (88 bp):
AGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
TTCGATCTGCTCCACTACTGCTT
Found at i:10712819 original size:132 final size:132
Alignment explanation
Indices: 10712712--10715067 Score: 3093
Period size: 132 Copynumber: 17.8 Consensus size: 132
10712702 CGATCTGTTT
* * *
10712712 CACTACTGCTTAGGGAGATAAGGCTAGTGGTTTAAATCTGCTTCCCTAGTACCTCGGGAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * * * * *
10712777 TATTCGCCATCTTCGATCTGCTCCACTACTGTTTAGAGAGATAAAATCTGTAATTATTAG-CCCG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA-TCTTCGACCCG
10712841 CTC
130 CTC
* *
10712844 CGCTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCT-TGAGAAGATA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA-AAGATA
* * *
10712908 AGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC-AGCCT
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGA-CCC
*
10712972 ACTC
129 GCTC
* *
10712976 CACTACTGCTTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * *
10713041 GATCCACCGTCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCAATCTTC-AGCCTG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGA-CCCG
10713105 CTC
130 CTC
* * *
10713108 CACTACTGCTTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCAGAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * ** *
10713173 GATCCGCCGTCTTTGATCTGCTCCACTACTTCTTAAGGAGATAAGATCTAAAATCTTC-AGCCTG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGA-CCCG
10713237 CTC
130 CTC
* * *
10713240 CACTACTTCTTAGGGAGATAAGACTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* *
10713305 GATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TATC-ATCCC
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCT-TCGA-CCC
10713368 GCTC
129 GCTC
* * * *
10713372 CACTACTACTTAGGGAGATAAGACTAATGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * *
10713437 GATTCACCGTCTTCGATCTGCTCCATTACTGTTTAGGGAGATAAGATCTGCAATCTT-TAGCCTG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGA-CCCG
10713501 CTC
130 CTC
* *
10713504 CACTACTGCTTAGGGAGATAATGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * * * *
10713569 GATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATTATTAG-CCCA
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA-TCTTCGACCCG
10713633 CTC
130 CTC
* * * *
10713636 CACTACTTCTTAGGGAGATAAGGCTTGTGGCTTAAATTTGCTTCCCTACTACCTCGGGAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * * *
10713701 GATTCGCCATCTTCGATTTGCTCCACTACTGCATAGGGAGATAAGATTTGTAATTTTC-ACCCTG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGACCC-G
10713765 CTC
130 CTC
*
10713768 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * * * *
10713833 GATTCGTCGTCTTCGATCTGTTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAG-CCCG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA-TCTTCGACCCG
10713897 CTC
130 CTC
* * *
10713900 TATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * *
10713965 GATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAG-CCCG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC-TTCGACCCG
10714029 CTC
130 CTC
* * *
10714032 CATTACTGCTTAGGGAGATAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTC-GAGAAGATA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA-AAGATA
* * *
10714096 AGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAG-CCC
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA-TCTTCGACCC
10714160 GCTC
129 GCTC
* *
10714164 CATTACTGTTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * *
10714229 GATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGAAGATAGGATCTGCAATCATTAG-CCCG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC-TTCGACCCG
10714293 CTC
130 CTC
* *
10714296 CATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTC-GAGAAGATA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA-AAGATA
* * *
10714360 AGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCTTC-AGCCT
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGA-CCC
10714424 GCTC
129 GCTC
* *
10714428 CACTACTGCTTAGGGAGATAATGCTAGTGGCTTAAATCTGCTTTCCTACTACCTCGGAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * *
10714493 GATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCATTAG-CCCG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC-TTCGACCCG
10714557 CTC
130 CTC
* * * *
10714560 CACTACTGCTTAGGGAGATAAGGATAATGGCTTAAATTTGCTTCTCTACTACCTC-GAGAAGATA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA-AAGATA
* * * *
10714624 AGATTCACCGTCTTCGATTTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC-AGCCT
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGA-CCC
10714688 GCTC
129 GCTC
* * *
10714692 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTATTACCTCGAAAAGATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * * * *
10714757 GATTCACCGTCTTCAATCTGCTCCACTACTACTCAGGGAGATAAGATCTGCAATCATTAG-CCCG
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC-TTCGACCCG
10714821 CTC
130 CTC
* * *
10714824 CATTACTGTTTAGGGAGATAAGGGTAGTGGCTTAAATCTGCTTCCCTACTACCTC-GAGAAGATA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA-AAGATA
* * * * * * *
10714888 AGATTCGCCGTATTTGATTTGCCCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC-AGTCT
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGA-CCC
*
10714952 ACTC
129 GCTC
* * * * *
10714956 TACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTTCTTACTACCTCGGGAATATAA
1 CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
* * *
10715021 GATTCCCCATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAAGAT
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
10715068 TTGTAATTTT
Statistics
Matches: 1977, Mismatches: 213, Indels: 68
0.88 0.09 0.03
Matches are distributed among these distances:
131 25 0.01
132 1929 0.98
133 23 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
CACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAA
GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCGACCCGC
TC
Found at i:10714799 original size:44 final size:44
Alignment explanation
Indices: 10712916--10714803 Score: 291
Period size: 44 Copynumber: 42.9 Consensus size: 44
10712906 TAAGATTTGT
* *
10712916 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* ** * * * ** *
10712961 -ATCTTCAGCCTACTCCACTACTGCTTAAGGAGATAAGGCT-AG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * * * *
10713003 TGGCCTAAATCTGCTTCC-CTACTACCTCGGAAAGATAAGATCCAC
1 CGTCTTCAATCTGC-TCCACTACTACTTAGG-GAGATAAGATTCAC
** **
10713048 CGTCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* ** * * ** *
10713093 -ATCTTCAGCCTGCTCCACTACTGCTTAAGGAGATAAGGCT-AG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * ** * *
10713135 TGGCCTAAATCTGCTTCC-CTACTACCTCAGAAAGATAAGATCCGC
1 CGTCTTCAATCTGC-TCCACTACTA-CTTAGGGAGATAAGATTCAC
** * * *
10713180 CGTCTTTGATCTGCTCCACTACTTCTTAAGGAGATAAGA-TCTAA
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTC-AC
** ** * * *
10713224 AATCTTCAGCCTGCTCCACTACTTCTTAGGGAGATAAGACT-AG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * *
10713267 TGGCTTAAATCTGCTTCC-CTACTACCTCGGGAAGATAAGATTCGC
1 CGTCTTCAATCTGC-TCCACTACTACTTAGGG-AGATAAGATTCAC
* * *
10713312 TGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-T--C
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * *
10713353 TGTAATT-ATCATCCCGCTCCACTACTACTTAGGGAGATAAGACT-AA
1 CGT-CTTCA--AT-CTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * **
10713399 TGGCTTAAATCTGCTTCC-CTACTACCTCGAAAAGATAAGATTCAC
1 CGTCTTCAATCTGC-TCCACTACTACTTAG-GGAGATAAGATTCAC
* * **
10713444 CGTCTTCGATCTGCTCCATTACTGTTTAGGGAGATAAGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* * ** * * *
10713489 -ATCTTTAGCCTGCTCCACTACTGCTTAGGGAGAT-A-ATGCTAG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTC-AC
* * * * * * *
10713531 TGGCTTAAATCTACTTCC-CTACTACCTCGGAAAGATAAGATTCAC
1 CGTCTTCAATCTGC-TCCACTACTACTTAGG-GAGATAAGATTCAC
* * *
10713576 CGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
** * ** ** * * *
10713621 ATTATT-AGCCCACTCCACTACTTCTTAGGGAGATAAGGCTT--G
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAA-GATTCAC
* * * * * * *
10713663 TGGCTTAAATTTGCTTCC-CTACTACCTCGGGAAGATAAGATTCGC
1 CGTCTTCAATCTGC-TCCACTACTACTTAGGG-AGATAAGATTCAC
* * * * * ***
10713708 CATCTTCGATTTGCTCCACTACTGCATAGGGAGATAAGATTTGT
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
** * ** * ** *
10713752 AATTTTCACCCTGCTCCACTACTGCTTAGGGAGATAAGGCT-AG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * * * **
10713795 TGGCTTAAATCTACTTCC-CTACTACCTCGGAAAGATAAGATTCGT
1 CGTCTTCAATCTGC-TCCACTACTACTTAGG-GAGATAAGATTCAC
* * *
10713840 CGTCTTCGATCTGTTCCACTACTACTTAGGGAGATAAGATTTGTA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGA-TT-CAC
** * ** * * * * ** *
10713885 ATTATT-AGCCCGCTCTATTACTGCTTAGGGAGATAAGGCT-AG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * ** *
10713927 TGGCTTAAATCTGCTTCC-CTACTACCTCGAAAAGATAAGATTCGC
1 CGTCTTCAATCTGC-TCCACTACTACTTAG-GGAGATAAGATTCAC
* *
10713972 CGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAGGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* ** * * * * *
10714017 -ATCATT-AGCCCGCTCCATTACTGCTTAGGGAGATAA-A-GCTAG
1 CGTC-TTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTC-AC
* * * * * * * *
10714059 TGGCTTAAATCTACTTCC-CTACTACCTCGAGAAGATAAGATTCGC
1 CGTCTTCAATCTGC-TCCACTACTACTTAG-GGAGATAAGATTCAC
* * *
10714104 CGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
** * ** * * ** ** *
10714149 ATTATT-AGCCCGCTCCATTACTGTTTAGGGAGATAAGGCT-AG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * * *
10714191 TGGCTTAAATCTGCTTCC-CTACTACCTCGGAAAGATAAGATTCGC
1 CGTCTTCAATCTGC-TCCACTACTACTTAGG-GAGATAAGATTCAC
* * *
10714236 CGTCTTCGATCTGCTCCACTACTACTTAGGAAGATAGGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* ** * * * ** *
10714281 -ATCATT-AGCCCGCTCCATTACTGCTTAGGGAGATAAGGCT-AG
1 CGTC-TTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * * * *
10714323 TGGCTTAAATCTACTTCC-CTACTACCTCGAGAAGATAAGATTCGC
1 CGTCTTCAATCTGC-TCCACTACTACTTAG-GGAGATAAGATTCAC
* * * *
10714368 CGTCTTCGATTTGCTCCACTACTGCTTAGAGAGATAAGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* ** * * *
10714413 -ATCTTCAGCCTGCTCCACTACTGCTTAGGGAGAT-A-ATGCTAG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTC-AC
* * * * * * * *
10714455 TGGCTTAAATCTGCTTTC-CTACTACCTCGGAAAGATAAGATTCGC
1 CGTCTTCAATCTGC-TCCACTACTACTTAGG-GAGATAAGATTCAC
* * *
10714500 CGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* ** * * *
10714545 -ATCATT-AGCCCGCTCCACTACTGCTTAGGGAGATAAGGA-T-AA
1 CGTC-TTCAATCTGCTCCACTACTACTTAGGGAGATAA-GATTCAC
* * * * * * * * *
10714587 TGGCTTAAATTTGCTTCTCTACTACCTCGAGAAGATAAGATTCAC
1 CGTCTTCAATCTGCTCCACTACTACTTAG-GGAGATAAGATTCAC
* * * *
10714632 CGTCTTCGATTTACTCCACTACTGCTTAGGGAGATAAGATCTGCA-
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT-T-CAC
* ** * ** *
10714677 -ATCTTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCT-AG
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
* * * * * * * **
10714719 TGGCTTAAATCTACTTCC-CTATTACCTCGAAAAGATAAGATTCAC
1 CGTCTTCAATCTGC-TCCACTACTACTTAG-GGAGATAAGATTCAC
*
10714764 CGTCTTCAATCTGCTCCACTACTACTCAGGGAGATAAGAT
1 CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGAT
10714804 CTGCAATCAT
Statistics
Matches: 1248, Mismatches: 474, Indels: 243
0.64 0.24 0.12
Matches are distributed among these distances:
40 3 0.00
41 14 0.01
42 18 0.01
43 208 0.17
44 691 0.55
45 291 0.23
46 23 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
CGTCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATTCAC
Found at i:10719546 original size:19 final size:20
Alignment explanation
Indices: 10719522--10719568 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
10719512 TTGTGACACT
*
10719522 CAATGCATATG-ATAAAATG
1 CAATGCAAATGCATAAAATG
*
10719541 CAATGCAAATGCATGAAATG
1 CAATGCAAATGCATAAAATG
10719561 -AATGCAAA
1 CAATGCAAA
10719569 AAGAGACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (20 bp):
CAATGCAAATGCATAAAATG
Found at i:10721444 original size:3 final size:3
Alignment explanation
Indices: 10721429--10721729 Score: 111
Period size: 3 Copynumber: 99.7 Consensus size: 3
10721419 AAATAGGACA
* * * **
10721429 AAT AAT AAA AAT AAT AGT AAT GAT AAT AAT AA- ATAT AAT GGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * * * ** *
10721474 AAT ATT AA- AAA AATT AAT -CT AAT GAT GAT AAT AGT GTT AAA AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * *
10721518 AAT AAT AAT AAT AAAT AA- ACG ACAT ATT AAT AAT AAT AGAA AAT AAC
1 AAT AAT AAT AAT -AAT AAT AAT A-AT AAT AAT AAT AAT A-AT AAT AAT
* * *
10721565 GAT AAT AAT AAT AGA- AGT AAT GAA- AAT AAT AAT AAT AGA- AAC AAT
1 AAT AAT AAT AAT A-AT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT
* * * *
10721610 AGT AAT AAA AAT AAT AAT AA- AAT AGAA AAT AAT AAT GAT ACATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT A-A-T AAT
* * * * *
10721657 AAT AAT AAC AAT -AT AA- AAA AAT AAT ACT -AT ATT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
10721702 AAT AGT AGGTT AAT AAT AAT AAT AAT AA
1 AAT AAT A--AT AAT AAT AAT AAT AAT AA
10721730 GGTAAAAAAA
Statistics
Matches: 216, Mismatches: 58, Indels: 48
0.67 0.18 0.15
Matches are distributed among these distances:
2 15 0.07
3 180 0.83
4 17 0.08
5 4 0.02
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:10721573 original size:25 final size:27
Alignment explanation
Indices: 10721515--10721577 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
10721505 TAGTGTTAAA
10721515 AATAATAATAATAATAAATAAACGACAT
1 AATAATAATAATAATAAATAAACGA-AT
*
10721543 ATTAATAATAATAGA-AAAT-AACG-AT
1 AATAATAATAATA-ATAAATAAACGAAT
10721568 AATAATAATA
1 AATAATAATA
10721578 GAAGTAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 11 0.34
27 4 0.12
28 16 0.50
29 1 0.03
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (27 bp):
AATAATAATAATAATAAATAAACGAAT
Found at i:10721669 original size:59 final size:57
Alignment explanation
Indices: 10721594--10721753 Score: 155
Period size: 59 Copynumber: 2.6 Consensus size: 57
10721584 ATGAAAATAA
10721594 TAATAATAGA-AACAATAGTAATAAAAATAATAATAAAATAGAAAATAATAAT-GATACAT
1 TAATAATA-ATAACAATAGTAA-AAAAATAATAATAAAATA-AAAATAATAATAG-TACAT
* **
10721653 TAATAATAATAACAATA-TAAAAAAATAATACTATATTAATAAAAATAATAATAGTAGGT
1 TAATAATAATAACAATAGTAAAAAAATAATA--ATA-AAATAAAAATAATAATAGTACAT
*
10721712 TAATAATAATAATAATAAGGTAAAAAAAATGAAATAATAAAA
1 TAATAATAATAACAAT-A-GT-AAAAAAAT--AATAATAAAA
10721754 ACACTATTAC
Statistics
Matches: 85, Mismatches: 5, Indels: 19
0.78 0.05 0.17
Matches are distributed among these distances:
57 10 0.12
58 4 0.05
59 47 0.55
60 6 0.07
62 3 0.04
63 11 0.13
65 4 0.05
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (57 bp):
TAATAATAATAACAATAGTAAAAAAATAATAATAAAATAAAAATAATAATAGTACAT
Found at i:10721702 original size:23 final size:23
Alignment explanation
Indices: 10721669--10721728 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
10721659 TAATAACAAT
*
10721669 ATAAAAA-AATAATACTATATTA
1 ATAAAAATAATAATACTAGATTA
* *
10721691 ATAAAAATAATAATAGTAGGTTA
1 ATAAAAATAATAATACTAGATTA
*
10721714 ATAATAATAATAATA
1 ATAAAAATAATAATA
10721729 AGGTAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
22 7 0.21
23 26 0.79
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (23 bp):
ATAAAAATAATAATACTAGATTA
Found at i:10721844 original size:21 final size:22
Alignment explanation
Indices: 10721797--10721852 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
10721787 AAAAGAACAC
* *
10721797 AATAATAGT-ATATAGAATAAT
1 AATAAAAGTAATATAGAATAAA
*
10721818 AGTAAAAGTAATA-AGAATAAA
1 AATAAAAGTAATATAGAATAAA
*
10721839 AATAAAAATAATAT
1 AATAAAAGTAATAT
10721853 TAAAAATAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (22 bp):
AATAAAAGTAATATAGAATAAA
Found at i:10721848 original size:18 final size:18
Alignment explanation
Indices: 10721827--10721861 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10721817 TAGTAAAAGT
10721827 AATAAGAATAAAAATAAA
1 AATAAGAATAAAAATAAA
* *
10721845 AATAATATTAAAAATAA
1 AATAAGAATAAAAATAA
10721862 TACTCTCCAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AATAAGAATAAAAATAAA
Found at i:10722185 original size:25 final size:25
Alignment explanation
Indices: 10722144--10722196 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
10722134 TCGTGTATTC
*
10722144 CTTGTATTGAAAGTCTCT-TTTTTT
1 CTTGTATTGAAACTCTCTCTTTTTT
*
10722168 CTTGTATTTGAATCTCTCTCCTTTTTT
1 CTTGTA-TTGAAACTCTCT-CTTTTTT
10722195 CT
1 CT
10722197 CCAAAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.25
25 10 0.42
27 8 0.33
ACGTcount: A:0.13, C:0.19, G:0.09, T:0.58
Consensus pattern (25 bp):
CTTGTATTGAAACTCTCTCTTTTTT
Found at i:10724191 original size:228 final size:228
Alignment explanation
Indices: 10723794--10725376 Score: 1311
Period size: 228 Copynumber: 6.9 Consensus size: 228
10723784 GACACAACAG
* * * * * *
10723794 ATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACAC
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
* *
10723859 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
* * * * * *
10723924 TCTTCGCTGGGAAACAGCTTGAGGATGGCCGTACCCTTGCTGACTACAACATCCAAAAGGAGTCC
131 TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAGTCT
10723989 ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
196 ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * *
10724022 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAAAGCTCCGACAC
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
* * *
10724087 AATTGATAATGTCAAGGCTAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
* * * * * * *
10724152 TCTTTGCCGGTAAGCAACTGGAAGATGGTCGCACCCTTGCTGACTACAACATTCAAAAAGAGTCT
131 TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAGTCT
* *
10724217 ACCCTCCACCTTGTGCTTCGTCTCAGGGGTGGC
196 ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * * * *
10724250 ATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
* * * *
10724315 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
* * ** * *
10724380 TCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAA-GAGTC
131 TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCA-AAAGGAGTC
* *
10724444 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGC
195 TACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * * * *
10724478 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCA-CTTTAGAGGTGGAGAGTTCTGATA
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTT-GAGGTGGAGAGCTCCGACA
* * * * * *
10724542 CAATTGATAACGTTAAGTCCAAGATTCAGGACAAGG-AGGGCATCCCACCAGACCAGCAGAGG-T
65 CAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGG-ATCCCACCTGACCAACAGAGGCT
* * * * * * * * *
10724605 TAATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAACATTCAAAAGGAA
129 T-ATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAG
* * *
10724670 TCTACCCTCCAT-TTGGT-GTTGCGTCTTC-GTGGTGGT
193 TCTACCCTCCATCTT-GTCCTT-CGTC-TCAGGGGTGGC
* * * * * * * * * *
10724706 ATGCA-AGTTTTTGTGAAGACCCTCACAGGAAAGACTATTA-CCTTGGAAGTTGAGAGTTCTGAT
1 ATGCAGA-TATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTT-GAGGTGGAGAGCTCCGAC
* * * * * * * * *
10724769 ACGATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCGGATCAACAGAGGCT
64 ACAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCT
* * * ** * * * *
10724834 GATTTTTGCTGGCAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTATAATATTCAGAAA-GAG
129 TATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCA-AAAGGAG
* * * * *
10724898 TCAACCCTCCA-CTTGGTGCTTCGCCTGC-GTGGTGGA
193 TCTACCCTCCATCTT-GTCCTTCGTCT-CAGGGGTGGC
** * * * *
10724934 ATGCAGATATTTGTGAAAACTTTGACCGGTAAA-ACCATTA-CGTTGGAGGTGGAGAGCTCCGAC
1 ATGCAGATATTTGTGAAAACCCTCACTGG-AAAGACCATCACCCTT-GAGGTGGAGAGCTCCGAC
** * * *
10724997 ACGGTTGATAATGTTAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAACAGAGG-
64 ACAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGG-ATCCCACCTGACCAACAGAGGC
* * * * * ** * * * *
10725060 TTGATTTTTGCCGGAAAGCAGCTCGAGGACGGGAGGACTCTTGCGGACTATAACATTCAAAAGGA
128 TT-ATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGA
* * * * * * * *
10725125 GTCGACCCTGCAT-TTGGT-TTTGCGCCTTAGAGGAGGG
192 GTCTACCCTCCATCTT-GTCCTT-CGTCTCAGGGGTGGC
* * * * * * * *
10725162 ATGCAGATATTTGTCAAGACCTTGACTGGGAAA-ACCATCACCCTGGAGGTTGAGAGCTCGGATA
1 ATGCAGATATTTGTGAAAACCCTCACT-GGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACA
* * * * * * * * *
10725226 CGATTGACAATGTAAAAGCAAAGATTCAGGACAAGG-AGGGAATTCCC-CCGGATCAGCAGAGG-
65 CAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGG-A-TCCCACCTGACCAACAGAGGC
* * * * * * *
10725288 TTGATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGAACCCTAGCTGACTACAATATCCAGAAGGA
128 TT-ATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGA
* *
10725353 GTCTACTCTGCATCTTGTCCTTCG
192 GTCTACCCTCCATCTTGTCCTTCG
10725377 CCTCCGTGGT
Statistics
Matches: 1119, Mismatches: 208, Indels: 56
0.81 0.15 0.04
Matches are distributed among these distances:
227 26 0.02
228 1064 0.95
229 29 0.03
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (228 bp):
ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAGTCT
ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
Found at i:10725168 original size:684 final size:679
Alignment explanation
Indices: 10723793--10725376 Score: 1578
Period size: 684 Copynumber: 2.3 Consensus size: 679
10723783 CGACACAACA
* * * * * * *
10723793 GATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACA
1 GATGCAGATCTTTGTAAAAAC-CTCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATA
* * * * *
10723858 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTT
65 CAATTGATAATGT-AAAGCCAAGATTCAGGACAAGG-AGGGAT-CCCCCAGACCAGCAGAGG-TT
* * * * * * *
10723923 ATCTTCGCTGGGAAACAGCTTGAGGATGGCCGTACCCTTGCTGACTACAACATCCAAAAGGAGTC
126 ATCTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTACAACATCCAAAAGGAATC
* *
10723988 CACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACTGGCA
191 CACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACAGGAA
* * * *
10724053 AGACAATCACCCTTGAGGTTGAAAGCTCCGACACAATTGATAATGTCAAGGCTAAGATCCAGGAT
256 AGACAATCACCCTTGAAGTTGAAAGCTCCGACACAATTGACAATGTCAAAGCTAAGATCCAGGAC
* * * * **
10724118 AAGGAAGGGATCCCTCCTGACCAACAGAGGCTTATCTTTGCCGGTAAGCAACTGGAAGATGGTCG
321 AAGGAAGGGATCCCACCGGACCAACAGAGGCTGATCTTTGCCGGCAAGCAACTGGAAGATGGGAG
* *
10724183 CACCCTTGCTGACTACAACATTCAAAAAGAGTCTACCCTCCACCTTGTGCTTCGTCTCAGGGGTG
386 CACCCTTGCTGACTACAACATTCAAAAAGAGTCAACCCTCCACCTTGTGCTTCGCCTCAGGGGTG
* * *
10724248 GCATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGAC
451 GAATGCAAATATTTGTCAAAACTCTTACCGGCAAAACAATCACCCTTGAAGTGGAAAGCTCCGAC
*
10724313 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAACAGAGGCT
516 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCTGACCAACAGAGGCT
* * * * * *
10724378 TATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAAGAGT
581 TATCTTTGCCGGAAAACAACTCGAGGACGGCAGCACCCTTGCGGACTACAACATCCAGAAAGAGT
* * * *
10724443 CTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGG
646 CGACCCTCCACCTTGTCCTTCGCCTTAGAGGAGG
* ** * *
10724477 CATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCTGATA
1 GATGCAGATCTTTGTAAAAAC-CTCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATA
* *
10724542 CAATTGATAACGTTAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGAGGTTA
65 CAATTGATAATGTAAAG-CCAAGATTCAGGACAAGGAGGG-ATCCC-CCAGACCAGCAGAGGTT-
* * *
10724607 ATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAACATTCAAAAGGAATC
126 ATCTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTACAACATCCAAAAGGAATC
* * * * * * *
10724672 TACCCTCCAT-TTGGT-GTTGCGTCTTC-GTGGTGGTATGCA-AGTTTTTGTGAAGACCCTCACA
191 CACCCTCCATCTT-GTCCTT-CGTC-TCAGGGGTGGCATGCAGA-TCTTCGTGAAAACCCTCACA
* * * * * * * *
10724733 GGAAAGACTATTA-CCTTGGAAGTTGAGAGTTCTGATACGATTGACAATGTGAAAGCTAAGATCC
252 GGAAAGACAATCACCCTT-GAAGTTGAAAGCTCCGACACAATTGACAATGTCAAAGCTAAGATCC
* * * * * * *
10724797 AGGACAAGGAAGGTATTCCACCGGATCAACAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAGGAT
316 AGGACAAGGAAGGGATCCCACCGGACCAACAGAGGCTGATCTTTGCCGGCAAGCAACTGGAAGAT
* * * * *
10724862 GGGAGGACCCTTGCTGATTATAATATTCAGAAAGAGTCAACCCTCCA-CTTGGTGCTTCGCCTGC
381 GGGAGCACCCTTGCTGACTACAACATTCAAAAAGAGTCAACCCTCCACCTT-GTGCTTCGCCT-C
* * * * * * * * *
10724926 -GTGGTGGAATGCAGATATTTGTGAAAACT-TTGACCGGTAAAACCATTA-CGTTGGAGGTGGAG
444 AGGGGTGGAATGCAAATATTTGTCAAAACTCTT-ACCGGCAAAACAATCACCCTT-GAAGTGGAA
** * * * *
10724988 AGCTCCGACACGGTTGATAATGTTAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA
507 AGCTCCGACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCTGACCA
* * * * * * * *
10725053 ACAGAGG-TTGATTTTTGCCGGAAAGCAGCTCGAGGACGGGAGGACTCTTGCGGACTATAACATT
572 ACAGAGGCTT-ATCTTTGCCGGAAAACAACTCGAGGACGGCAGCACCCTTGCGGACTACAACATC
* * *
10725117 CA-AAAGGAGTCGACCCTGCA-TTTGGT-TTTGCGCCTTAGAGGAGG
636 CAGAAA-GAGTCGACCCTCCACCTT-GTCCTT-CGCCTTAGAGGAGG
* * * * * * * *
10725161 GATGCAGATATTTGTCAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCGGATA
1 GATGCAGATCTTTGTAAAAACC-TCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATA
* * * * *
10725226 CGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAGCAGAGGTTG
65 CAATTGATAATGT-AAAGCCAAGATTCAGGACAAGGAGGG-A-TCCCCCAGACCAGCAGAGGTT-
* * * * * * * * *
10725291 ATCTTTGCTGGGAAGC-AGTTGGAGGACGGTC-GAACCCTAGCTGACTACAATATCCAGAAGGAG
126 ATCTTTGCTGGGAAACAACTT-GAAGATGG-CAGAACCCTTGCAGACTACAACATCCAAAAGGAA
* * *
10725354 TCTACTCTGCATCTTGTCCTTCG
189 TCCACCCTCCATCTTGTCCTTCG
10725377 CCTCCGTGGT
Statistics
Matches: 729, Mismatches: 147, Indels: 48
0.79 0.16 0.05
Matches are distributed among these distances:
683 41 0.06
684 673 0.92
685 15 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (679 bp):
GATGCAGATCTTTGTAAAAACCTCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATAC
AATTGATAATGTAAAGCCAAGATTCAGGACAAGGAGGGATCCCCCAGACCAGCAGAGGTTATCTT
TGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTACAACATCCAAAAGGAATCCACCC
TCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACAGGAAAGACA
ATCACCCTTGAAGTTGAAAGCTCCGACACAATTGACAATGTCAAAGCTAAGATCCAGGACAAGGA
AGGGATCCCACCGGACCAACAGAGGCTGATCTTTGCCGGCAAGCAACTGGAAGATGGGAGCACCC
TTGCTGACTACAACATTCAAAAAGAGTCAACCCTCCACCTTGTGCTTCGCCTCAGGGGTGGAATG
CAAATATTTGTCAAAACTCTTACCGGCAAAACAATCACCCTTGAAGTGGAAAGCTCCGACACAAT
TGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCTGACCAACAGAGGCTTATCT
TTGCCGGAAAACAACTCGAGGACGGCAGCACCCTTGCGGACTACAACATCCAGAAAGAGTCGACC
CTCCACCTTGTCCTTCGCCTTAGAGGAGG
Found at i:10725388 original size:456 final size:453
Alignment explanation
Indices: 10723793--10725380 Score: 1528
Period size: 456 Copynumber: 3.5 Consensus size: 453
10723783 CGACACAACA
* * * * * *
10723793 GATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACA
1 GATGCAGATATTTGTCAAAACTCTTACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGACA
* * * * *
10723858 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTT
66 CAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGCTT
* *
10723923 ATCTTCGCTGGGAAACAGCTT-GAGGATGGCCGTACCCTTGCTGACTACAACATCCA-AAAGGAG
131 ATCTTTGCTGGGAAACAG-TTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAA-GAG
* * *
10723986 TCCACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACTGG
194 TCTACCCTCCATCTTGTCCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACTGG
* * * * * * *
10724051 CAAGACAATCACCCTTGAGGTTGAAAGCTCCGACACAATTGATAATGTCAAGGCTAAGATCCAGG
259 AAAAACCATCA-CCTTGAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCAGG
* * * *
10724116 ATAAGGAAGGGATCCCTCCTGACCAACAGAGGCTTATCTTTGCCGGTAAGCAACTGGAAGATGGT
323 ATAAGG-AGGGATCCCACCTGACCAACAGAGG-TTATTTTTGCCGGAAAGCAACTCGAAGATGG-
* * * * * *
10724181 C-GCACCCTTGCTGACTACAACATTCAAAAAGAGTCTACCCTCCACCTT-GTGCTT-CGTCTCAG
385 CAGAACCCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCA-TTTGGT-CTTGCGTCTTAG
*
10724243 GGGTGG
448 AGGTGG
* * * * * *
10724249 CATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGACA
1 GATGCAGATATTTGTCAAAACTCTTACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGACA
* * * *
10724314 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTA-TCCCTCCTGACCAACAGAGGCT
66 CAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCC-CCGGACCAACAGAGGCT
* * *
10724378 TATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAAGAGT
130 TATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAGT
* * * * *
10724443 CTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGCATGCAGATCTTTGTAAAAACGCTCACTGGA
195 CTACCCTCCATCTTGTCCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACTGGA
* * * * * * *
10724508 AAAACCATCACTTTAGAGGTGGAGAGTTCTGATACAATTGATAACGTTAAGTCCAAGATTCAGGA
260 AAAACCATCACCTT-GAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCAGGA
* * * * *
10724573 CAAGGAGGGCATCCCACCAGACCAGCAGAGGTTAATTTTTGCTGGGAAA-CAACTTGAAGATGGC
324 TAAGGAGGG-ATCCCACCTGACCAACAGAGGTT-ATTTTTGC-CGGAAAGCAACTCGAAGATGGC
* * * *
10724637 AGAACCCTTGCAGACTATAACATTCAAAAGGAATCTACCCTCCATTTGGTGTTGCGTCTTCGTGG
386 AGAACCCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGCGTCTTAGAGG
10724702 TGG
451 TGG
* * * * * * * * * * * * * *
10724705 TATGCA-AGTTTTTGTGAAGACCCTCAC-AGGAAAGACTATTACCTTGGAAGTTGAGAGTTCTGA
1 GATGCAGA-TATTTGTCAAAACTCTTACTGGGAAA-ACCATCACCCTGGAAGTGGAAAGCTCCGA
* * * * * * *
10724768 TACGATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCGGATCAACAGAGGC
64 CACAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGC
* * * * * ** * * * * *
10724833 TGATTTTTGCTGGCAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTATAATATTCAGAAAGAG
129 TTATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAG
* * * * * ** * *
10724898 TCAACCCTCCA-CTTGGTGCTTCGCCTGC-GTGGTGGAATGCAGATATTTGTGAAAACTTTGACC
194 TCTACCCTCCATCTT-GTCCTTCGCCT-CAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACT
* * * **
10724961 GGTAAAACCATTACGTTGGAGGTGGAGAGCTCCGACACGGTTGATAATGTTAAGGCCAAGATCCA
257 GGAAAAACCATCACCTT-GAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCA
* * * *
10725026 AGATAAGGAGGGTATCCCACCTGACCAACAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAGGACG
321 GGATAAGGAGGG-ATCCCACCTGACCAACAGAGGTT-ATTTTTGCCGGAAAGCAACTCGAAGATG
* * * * * * * *
10725091 GGAGGACTCTTGCGGACTATAACATTCAAAAGGAGTCGACCCTGCATTTGGTTTTGCGCCTTAGA
384 GCAGAACCCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGCGTCTTAGA
*
10725156 GGAGG
449 GGTGG
* * * * * *
10725161 GATGCAGATATTTGTCAAGAC-CTTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCGGAT
1 GATGCAGATATTTGTCAAAACTCTT-ACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGAC
* * * * * * * * *
10725225 ACGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAGCAGAGG-T
65 ACAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGCT
* * * * * *
10725289 TGATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGAACCCTAGCTGACTACAATATCCAGAAGGAG
130 T-ATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAG
* *
10725354 TCTACTCTGCATCTTGTCCTTCGCCTC
194 TCTACCCTCCATCTTGTCCTTCGCCTC
10725381 CGTGGTGGTT
Statistics
Matches: 935, Mismatches: 176, Indels: 43
0.81 0.15 0.04
Matches are distributed among these distances:
455 35 0.04
456 881 0.94
457 19 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (453 bp):
GATGCAGATATTTGTCAAAACTCTTACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGACA
CAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGCTT
ATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAGTC
TACCCTCCATCTTGTCCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACTGGAA
AAACCATCACCTTGAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCAGGATA
AGGAGGGATCCCACCTGACCAACAGAGGTTATTTTTGCCGGAAAGCAACTCGAAGATGGCAGAAC
CCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGCGTCTTAGAGGTGG
Found at i:10725639 original size:87 final size:87
Alignment explanation
Indices: 10725488--10725670 Score: 330
Period size: 87 Copynumber: 2.1 Consensus size: 87
10725478 TTTTTTAAGG
10725488 TAATGATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCG
1 TAAT-ATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCG
10725553 GACTATTTCATAATCTCCTATCC
65 GACTATTTCATAATCTCCTATCC
* *
10725576 TAATATACTTTGGTGTGAAGTGGTTAGAGAGCTACAACTCAGTTACTATATTAAATAAGGTTCGG
1 TAATATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCGG
*
10725641 ACTATTTCATAATCTCGTATCC
66 ACTATTTCATAATCTCCTATCC
10725663 TAATATAC
1 TAATATAC
10725671 ATTCATCTTG
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
87 88 0.96
88 4 0.04
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (87 bp):
TAATATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCGG
ACTATTTCATAATCTCCTATCC
Found at i:10727359 original size:9 final size:9
Alignment explanation
Indices: 10727345--10727376 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
10727335 CCATTTGTCC
10727345 TTGCATCTG
1 TTGCATCTG
10727354 TTGCATCTG
1 TTGCATCTG
10727363 TTGCATC-G
1 TTGCATCTG
10727371 TTGCAT
1 TTGCAT
10727377 GTCTTAGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (9 bp):
TTGCATCTG
Found at i:10728756 original size:30 final size:30
Alignment explanation
Indices: 10728720--10728777 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
10728710 CTTAGCAAGC
10728720 AAATGCCTCTAAAATAATAACAAAATTAAA
1 AAATGCCTCTAAAATAATAACAAAATTAAA
10728750 AAATGCCTCTAAAATAATAACAAAATTA
1 AAATGCCTCTAAAATAATAACAAAATTA
10728778 TCAATAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAA
Found at i:10728836 original size:22 final size:22
Alignment explanation
Indices: 10728811--10728853 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10728801 TATCCAAACA
10728811 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* *
10728833 ATAATAATAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
10728854 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.60, C:0.12, G:0.09, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:10734964 original size:19 final size:19
Alignment explanation
Indices: 10734940--10734976 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
10734930 AAATTCCTTA
10734940 TTCCA-TTCGCCAACTAACT
1 TTCCATTTC-CCAACTAACT
10734959 TTCCATTTCCCAACTAAC
1 TTCCATTTCCCAACTAAC
10734977 ATGTAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.27, C:0.38, G:0.03, T:0.32
Consensus pattern (19 bp):
TTCCATTTCCCAACTAACT
Found at i:10736319 original size:5 final size:5
Alignment explanation
Indices: 10736309--10736334 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10736299 ATATGCCGGG
10736309 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
10736335 ATTATGTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:10737083 original size:17 final size:17
Alignment explanation
Indices: 10737038--10737083 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
10737028 TAAAACTATA
10737038 AAAAATCATTAAAAATGT
1 AAAAATCA-TAAAAATGT
** *
10737056 AAAAAAAATAAAATTGT
1 AAAAATCATAAAAATGT
10737073 AAAAATCATAA
1 AAAAATCATAA
10737084 CAAGTTATTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (17 bp):
AAAAATCATAAAAATGT
Found at i:10750147 original size:51 final size:51
Alignment explanation
Indices: 10750087--10750188 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
10750077 CCTCCTTCTC
10750087 AATTAAGTAATTTCATCCAATTAG-GTAACTGGGGATTGGTTTTATGGTAGG
1 AATTAAGTAATTTCATCCAATT-GCGTAACTGGGGATTGGTTTTATGGTAGG
* *
10750138 AATTAAGTAATTTCTTCCAATTGCGTAATTGGGGATTGGTTTTATGGTAGG
1 AATTAAGTAATTTCATCCAATTGCGTAACTGGGGATTGGTTTTATGGTAGG
10750189 TATAGAGAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 47 0.98
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.39
Consensus pattern (51 bp):
AATTAAGTAATTTCATCCAATTGCGTAACTGGGGATTGGTTTTATGGTAGG
Found at i:10751144 original size:12 final size:12
Alignment explanation
Indices: 10751108--10751145 Score: 55
Period size: 10 Copynumber: 3.4 Consensus size: 12
10751098 ATAAAATGAT
10751108 ATTATATTTATA
1 ATTATATTTATA
10751120 A-TAT-TTTAT-
1 ATTATATTTATA
10751129 ATTATATTTATA
1 ATTATATTTATA
10751141 ATTAT
1 ATTAT
10751146 GATAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
9 1 0.04
10 8 0.35
11 8 0.35
12 6 0.26
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTATATTTATA
Found at i:10751153 original size:21 final size:20
Alignment explanation
Indices: 10751097--10751153 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
10751087 TTGATTCATA
*
10751097 TATAAAATGAT-ATTATATT
1 TATAATATGATAATTATATT
**
10751116 TATAATATTTTATATTATATT
1 TATAATATGATA-ATTATATT
10751137 TATAATTATGATAATTA
1 TATAA-TATGATAATTA
10751154 AATTAATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 8 0.27
21 17 0.57
22 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (20 bp):
TATAATATGATAATTATATT
Found at i:10753313 original size:26 final size:26
Alignment explanation
Indices: 10753277--10753326 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
10753267 AGTAGGTTAA
10753277 TTTTGAAAAATCACCATAAATTTTAG
1 TTTTGAAAAATCACCATAAATTTTAG
10753303 TTTTGAAAAATCACCATAAATTTT
1 TTTTGAAAAATCACCATAAATTTT
10753327 GGAAATCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (26 bp):
TTTTGAAAAATCACCATAAATTTTAG
Found at i:10767741 original size:40 final size:40
Alignment explanation
Indices: 10767646--10767743 Score: 133
Period size: 40 Copynumber: 2.5 Consensus size: 40
10767636 CTTTTCAGGT
* * * *
10767646 CAAATCCTATCCGCCTTAAGTTACCGTAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAATTACCATAGTGAATCAGGAA
* * *
10767686 TAAATCCTATTCACTTTAAATTACTATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAATTACCATAGTGAATCAGGAA
10767726 CAAATCCTATCCACTTTA
1 CAAATCCTATCCACTTTA
10767744 TATTCTCGAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (40 bp):
CAAATCCTATCCACTTTAAATTACCATAGTGAATCAGGAA
Found at i:10771583 original size:25 final size:25
Alignment explanation
Indices: 10771549--10771598 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
10771539 CGGAAAAGTT
10771549 AAGGAATGATATCTCTTCTTTTGTG
1 AAGGAATGATATCTCTTCTTTTGTG
10771574 AAGGAATGATATCTCTTCTTTTGTG
1 AAGGAATGATATCTCTTCTTTTGTG
10771599 CAAATGGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.44
Consensus pattern (25 bp):
AAGGAATGATATCTCTTCTTTTGTG
Found at i:10774491 original size:35 final size:35
Alignment explanation
Indices: 10774440--10774510 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
10774430 GCTTTTTAGG
*
10774440 TCATACTGGATTTTATAGAAGGTTTATTAAAGATT
1 TCATACTGGATTTTATAGAAGATTTATTAAAGATT
*
10774475 TCATGCTGGATTTTATAGAAGATTTATTAAAGATT
1 TCATACTGGATTTTATAGAAGATTTATTAAAGATT
10774510 T
1 T
10774511 TTCTAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.44
Consensus pattern (35 bp):
TCATACTGGATTTTATAGAAGATTTATTAAAGATT
Found at i:10785694 original size:21 final size:21
Alignment explanation
Indices: 10785660--10785704 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
10785650 ACACCTATTA
*
10785660 TTTATTTTTACTTTTTTTA-T
1 TTTATTTTTACTTTATTTAGT
10785680 TTTATTTTTACCTTTATTTAGT
1 TTTATTTTTA-CTTTATTTAGT
10785702 TTT
1 TTT
10785705 TGAAATTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.45
21 8 0.36
22 4 0.18
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTATTTTTACTTTATTTAGT
Found at i:10788095 original size:13 final size:13
Alignment explanation
Indices: 10788077--10788107 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
10788067 TTACCAAAGG
10788077 GACACGACCATGT
1 GACACGACCATGT
*
10788090 GACACGGCCATGT
1 GACACGACCATGT
10788103 GACAC
1 GACAC
10788108 ACCCGTGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.13
Consensus pattern (13 bp):
GACACGACCATGT
Found at i:10791504 original size:12 final size:12
Alignment explanation
Indices: 10791489--10791519 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
10791479 TATTTTTCTT
10791489 TATTTTTATTTC
1 TATTTTTATTTC
*
10791501 TATTTCTATTTC
1 TATTTTTATTTC
10791513 TATTTTT
1 TATTTTT
10791520 CATGTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (12 bp):
TATTTTTATTTC
Found at i:10796306 original size:11 final size:11
Alignment explanation
Indices: 10796290--10796314 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10796280 TGTGAGAAGA
10796290 CAAAATTTTCT
1 CAAAATTTTCT
10796301 CAAAATTTTCT
1 CAAAATTTTCT
10796312 CAA
1 CAA
10796315 TTCTGTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (11 bp):
CAAAATTTTCT
Found at i:10797118 original size:46 final size:46
Alignment explanation
Indices: 10797064--10797373 Score: 478
Period size: 46 Copynumber: 6.7 Consensus size: 46
10797054 TGACATAGTG
* * * *
10797064 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
10797110 TCTTTCAACCATGGTCTTGTTCATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
10797156 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
10797202 TCTTTCAACCATGGTCTTACAAATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
10797248 TCTTTCAACCATGGTATTACACATTTCATATCAGGTTGCCATGGAA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
10797294 TCTTTCAACCATGGTCTTAAACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
10797340 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
10797374 AGAGCACACT
Statistics
Matches: 244, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 240 0.98
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:10799072 original size:46 final size:46
Alignment explanation
Indices: 10799022--10799236 Score: 306
Period size: 46 Copynumber: 4.7 Consensus size: 46
10799012 TGCCACAGTG
* * * *
10799022 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGCTGCCATGGTA
*** * * *
10799068 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCGTGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGCTGCCATGGTA
*
10799114 TCTTTCAACCATGGTCTTACAAATTTCATATCATGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGCTGCCATGGTA
*
10799160 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGCTGCCATGGTA
10799206 TCTTTCAACCATGGTCTTACACATTTCATAT
1 TCTTTCAACCATGGTCTTACACATTTCATAT
10799237 TAGAGAGCAC
Statistics
Matches: 153, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 149 0.97
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGCTGCCATGGTA
Found at i:10803678 original size:3 final size:3
Alignment explanation
Indices: 10803670--10803701 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10803660 ATTTTAAGAG
10803670 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10803702 AACAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10808246 original size:21 final size:22
Alignment explanation
Indices: 10808222--10808267 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
10808212 ATTACACACG
*
10808222 TATGTGTATAAAAAT-TATAAA
1 TATGTATATAAAAATATATAAA
*
10808243 TATGTATTTAAAAATAATATAAA
1 TATGTATATAAAAAT-ATATAAA
10808266 TA
1 TA
10808268 ATAAAATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 13 0.62
23 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (22 bp):
TATGTATATAAAAATATATAAA
Found at i:10808313 original size:19 final size:20
Alignment explanation
Indices: 10808281--10808318 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10808271 AAATATGCAT
*
10808281 AATTAAAATTAAAA-AATAA
1 AATTAAAATCAAAATAATAA
*
10808300 AATTAATATCAAAATAATA
1 AATTAAAATCAAAATAATA
10808319 TTTTAGTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
AATTAAAATCAAAATAATAA
Found at i:10810013 original size:26 final size:26
Alignment explanation
Indices: 10809984--10810034 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
10809974 TATATACTAA
* *
10809984 ATATATATATATTTTTATTTTTAATC
1 ATATATACATATTTTTAATTTTAATC
* *
10810010 ATATTTACATTTTTTTAATTTTAAT
1 ATATATACATATTTTTAATTTTAAT
10810035 ATAATCACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (26 bp):
ATATATACATATTTTTAATTTTAATC
Found at i:10810047 original size:25 final size:26
Alignment explanation
Indices: 10809995--10810057 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
10809985 TATATATATA
* * *
10809995 TTTTTATTTTTAATCATATTTACATT
1 TTTTTAATTTTAATCATAATCACATT
10810021 TTTTTAATTTTAAT-ATAATCAC-TT
1 TTTTTAATTTTAATCATAATCACATT
10810045 TTTATTATATTTT
1 TTT-TTA-ATTTT
10810058 TAATTTGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 5 0.16
25 9 0.28
26 18 0.56
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTTTAATTTTAATCATAATCACATT
Found at i:10810060 original size:27 final size:28
Alignment explanation
Indices: 10809995--10810061 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 28
10809985 TATATATATA
* *
10809995 TTTT-TATTTTTAATCATATTTACATTT
1 TTTTATATTTTTAATCATAATCACATTT
10810022 TTTTA-A-TTTTAAT-ATAATCAC-TTT
1 TTTTATATTTTTAATCATAATCACATTT
10810046 TTATTATATTTTTAAT
1 TT-TTATATTTTTAAT
10810062 TTGTGTATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
24 5 0.15
25 9 0.26
26 8 0.24
27 12 0.35
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTTATATTTTTAATCATAATCACATTT
Found at i:10810105 original size:41 final size:40
Alignment explanation
Indices: 10810044--10810130 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 40
10810034 TATAATCACT
* *
10810044 TTTTATTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAATATATTTTTAATTTGTGTATTATTTTAAGAATTG
* * * * *
10810084 TTTTAATATAGTTTTTTATTTGTTTCTTATTTTAATATTTG
1 TTTTAATATA-TTTTTAATTTGTGTATTATTTTAAGAATTG
10810125 TTTTAA
1 TTTTAA
10810131 ATGTATTTGA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 9 0.23
41 30 0.77
ACGTcount: A:0.24, C:0.01, G:0.09, T:0.66
Consensus pattern (40 bp):
TTTTAATATATTTTTAATTTGTGTATTATTTTAAGAATTG
Found at i:10810812 original size:30 final size:28
Alignment explanation
Indices: 10810766--10810822 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
10810756 CTTCCTTTTC
*
10810766 TTTTTTTTTTATTAAATGACCCAATATT
1 TTTTTTTTTTAGTAAATGACCCAATATT
* *
10810794 TTTTATTTTTTACGTAAATGGCTCAATAT
1 TTTT-TTTTTTA-GTAAATGACCCAATAT
10810823 GCTTGTACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 7 0.29
30 13 0.54
ACGTcount: A:0.28, C:0.11, G:0.07, T:0.54
Consensus pattern (28 bp):
TTTTTTTTTTAGTAAATGACCCAATATT
Found at i:10814052 original size:9 final size:9
Alignment explanation
Indices: 10814038--10814063 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
10814028 TTGTGTTGAA
10814038 GTTATTTAG
1 GTTATTTAG
10814047 GTTATTTAG
1 GTTATTTAG
10814056 GTTATTTA
1 GTTATTTA
10814064 ATACTTGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (9 bp):
GTTATTTAG
Found at i:10815389 original size:16 final size:16
Alignment explanation
Indices: 10815365--10815398 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10815355 ATTACATACC
10815365 ATTGAATCATTCAGTT
1 ATTGAATCATTCAGTT
*
10815381 ATTGCATCATTCAGTT
1 ATTGAATCATTCAGTT
10815397 AT
1 AT
10815399 CTTTCTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (16 bp):
ATTGAATCATTCAGTT
Found at i:10822411 original size:23 final size:21
Alignment explanation
Indices: 10822354--10822412 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 21
10822344 AAATATTAGT
*
10822354 TTATATAAAATATTTTAATTT
1 TTATATAAAATATTTTAATTA
* *
10822375 TTCATGTAAGAATATTTTTATTAA
1 TT-ATATAA-AATATTTTAATT-A
10822399 TTATATAATAATAT
1 TTATATAA-AATAT
10822413 ATATCTGACT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 2 0.07
22 5 0.17
23 21 0.70
24 2 0.07
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (21 bp):
TTATATAAAATATTTTAATTA
Found at i:10825623 original size:17 final size:18
Alignment explanation
Indices: 10825590--10825624 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10825580 AAAGATAAGA
10825590 TTAAATACAAATAAAAAT
1 TTAAATACAAATAAAAAT
10825608 TTAAA-ACAATATAAAAA
1 TTAAATACAA-ATAAAAA
10825625 GTATACTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (18 bp):
TTAAATACAAATAAAAAT
Found at i:10825859 original size:29 final size:29
Alignment explanation
Indices: 10825800--10825869 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
10825790 ACATAGTGAT
*
10825800 AAATAA-ATAATAATATAATATATAATGA
1 AAATAATATAATAATAAAATATATAATGA
* *
10825828 AAATGATATAATGAATAAAATATAT-ATTA
1 AAATAATATAAT-AATAAAATATATAATGA
10825857 AAATAATATAATA
1 AAATAATATAATA
10825870 TATATGATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 6 0.17
29 19 0.53
30 11 0.31
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (29 bp):
AAATAATATAATAATAAAATATATAATGA
Found at i:10837880 original size:16 final size:16
Alignment explanation
Indices: 10837856--10837889 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10837846 TGTTTGCATA
* *
10837856 TTCTTTTTGTGGTTTT
1 TTCTATTTGTAGTTTT
10837872 TTCTATTTGTAGTTTT
1 TTCTATTTGTAGTTTT
10837888 TT
1 TT
10837890 TTAAATTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.15, T:0.74
Consensus pattern (16 bp):
TTCTATTTGTAGTTTT
Found at i:10846437 original size:13 final size:13
Alignment explanation
Indices: 10846421--10846453 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10846411 TTTAATTAAA
*
10846421 TTAGTTAATTAGT
1 TTAGATAATTAGT
10846434 TTAGATAATTAGT
1 TTAGATAATTAGT
10846447 TTA-ATAA
1 TTAGATAA
10846454 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:10853266 original size:6 final size:6
Alignment explanation
Indices: 10853255--10853340 Score: 68
Period size: 6 Copynumber: 14.3 Consensus size: 6
10853245 AATCCTCCTA
* * * *
10853255 TTTTAT TTTTAT TTTTA- -TTTAT TCTTAT TCTTAT TCTTAT TTTATTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT
* * * *
10853302 ATTTTAT TCTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
10853341 CAATTTTCTT
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
4 4 0.06
6 54 0.83
7 4 0.06
8 3 0.05
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:10853320 original size:9 final size:10
Alignment explanation
Indices: 10853262--10853334 Score: 55
Period size: 10 Copynumber: 7.3 Consensus size: 10
10853252 CTATTTTATT
*
10853262 TTTATTTTTA
1 TTTATTCTTA
10853272 TTTATTCTTA
1 TTTATTCTTA
10853282 TTCTTATTCTTA
1 -T-TTATTCTTA
10853294 TTT-TAT-TTA
1 TTTAT-TCTTA
10853303 TTTTATTCTTA
1 -TTTATTCTTA
10853314 TTT-TTCTT-
1 TTTATTCTTA
* *
10853322 TTGATTTTTA
1 TTTATTCTTA
10853332 TTT
1 TTT
10853335 TCATTTCAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
8 2 0.04
9 13 0.25
10 21 0.41
11 6 0.12
12 9 0.18
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.75
Consensus pattern (10 bp):
TTTATTCTTA
Found at i:10853329 original size:32 final size:34
Alignment explanation
Indices: 10853257--10853334 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 34
10853247 TCCTCCTATT
*
10853257 TTATTTTTATTTTTATTTATTCTTATTCTTATTC
1 TTATTTTTATTTATATTTATTCTTATTCTTATTC
* *
10853291 TTA-TTTTATTTAT-TTTATTCTTATTTTTCTT-
1 TTATTTTTATTTATATTTATTCTTATTCTTATTC
10853322 TTGATTTTTATTT
1 TT-ATTTTTATTT
10853335 TCATTTCAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
31 2 0.05
32 17 0.44
33 17 0.44
34 3 0.08
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (34 bp):
TTATTTTTATTTATATTTATTCTTATTCTTATTC
Found at i:10855130 original size:21 final size:22
Alignment explanation
Indices: 10855090--10855130 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10855080 TACTTAGCAT
10855090 ATTTATGGATGTTTACTGCTAG
1 ATTTATGGATGTTTACTGCTAG
* *
10855112 ATTTGTGGAT-TTTAGTGCT
1 ATTTATGGATGTTTACTGCT
10855131 TTTAATCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.20, C:0.07, G:0.24, T:0.49
Consensus pattern (22 bp):
ATTTATGGATGTTTACTGCTAG
Found at i:10860410 original size:6 final size:6
Alignment explanation
Indices: 10860399--10860484 Score: 68
Period size: 6 Copynumber: 14.3 Consensus size: 6
10860389 AATCCTCCTA
* * * *
10860399 TTTTAT TTTTAT TTTTA- -TTTAT TCTTAT TCTTAT TCTTAT TTTATTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT
* * * *
10860446 ATTTTAT TCTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
10860485 CAATTTTCTT
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
4 4 0.06
6 54 0.83
7 4 0.06
8 3 0.05
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:10860464 original size:9 final size:10
Alignment explanation
Indices: 10860406--10860478 Score: 55
Period size: 10 Copynumber: 7.3 Consensus size: 10
10860396 CTATTTTATT
*
10860406 TTTATTTTTA
1 TTTATTCTTA
10860416 TTTATTCTTA
1 TTTATTCTTA
10860426 TTCTTATTCTTA
1 -T-TTATTCTTA
10860438 TTT-TAT-TTA
1 TTTAT-TCTTA
10860447 TTTTATTCTTA
1 -TTTATTCTTA
10860458 TTT-TTCTT-
1 TTTATTCTTA
* *
10860466 TTGATTTTTA
1 TTTATTCTTA
10860476 TTT
1 TTT
10860479 TCATTTCAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
8 2 0.04
9 13 0.25
10 21 0.41
11 6 0.12
12 9 0.18
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.75
Consensus pattern (10 bp):
TTTATTCTTA
Found at i:10860473 original size:32 final size:34
Alignment explanation
Indices: 10860401--10860478 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 34
10860391 TCCTCCTATT
*
10860401 TTATTTTTATTTTTATTTATTCTTATTCTTATTC
1 TTATTTTTATTTATATTTATTCTTATTCTTATTC
* *
10860435 TTA-TTTTATTTAT-TTTATTCTTATTTTTCTT-
1 TTATTTTTATTTATATTTATTCTTATTCTTATTC
10860466 TTGATTTTTATTT
1 TT-ATTTTTATTT
10860479 TCATTTCAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
31 2 0.05
32 17 0.44
33 17 0.44
34 3 0.08
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (34 bp):
TTATTTTTATTTATATTTATTCTTATTCTTATTC
Found at i:10862274 original size:21 final size:22
Alignment explanation
Indices: 10862234--10862274 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10862224 TACTTAGCAT
10862234 ATTTATGGATGTTTACTGCTAG
1 ATTTATGGATGTTTACTGCTAG
* *
10862256 ATTTGTGGAT-TTTAGTGCT
1 ATTTATGGATGTTTACTGCT
10862275 TTTAATCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.20, C:0.07, G:0.24, T:0.49
Consensus pattern (22 bp):
ATTTATGGATGTTTACTGCTAG
Found at i:10863399 original size:13 final size:13
Alignment explanation
Indices: 10863383--10863415 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10863373 TTTAATTAAA
*
10863383 TTAGTTAATTAGT
1 TTAGATAATTAGT
10863396 TTAGATAATTAGT
1 TTAGATAATTAGT
10863409 TTA-ATAA
1 TTAGATAA
10863416 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:10868419 original size:14 final size:14
Alignment explanation
Indices: 10868400--10868450 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
10868390 CATAACTTAT
10868400 ATTATATACATATA
1 ATTATATACATATA
* *
10868414 ATTATATACATTTT
1 ATTATATACATATA
10868428 ATTATTATAACATATA
1 ATTA-TAT-ACATATA
10868444 TATTATA
1 -ATTATA
10868451 CATATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 16 0.53
15 3 0.10
16 7 0.23
17 4 0.13
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTATATACATATA
Found at i:10868447 original size:17 final size:17
Alignment explanation
Indices: 10868399--10868449 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
10868389 TCATAACTTA
10868399 TATTATATACATATA-AT
1 TATTATA-ACATATATAT
*
10868416 TA-TAT-ACAT-TTTAT
1 TATTATAACATATATAT
10868430 TATTATAACATATATAT
1 TATTATAACATATATAT
10868447 TAT
1 TAT
10868450 ACATATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 1 0.04
14 8 0.29
15 3 0.11
16 7 0.25
17 9 0.32
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTATAACATATATAT
Found at i:10870416 original size:26 final size:26
Alignment explanation
Indices: 10870365--10870447 Score: 148
Period size: 26 Copynumber: 3.2 Consensus size: 26
10870355 TGGTACAAAT
*
10870365 TGATAATGGGTTTAGGTAAATATTCCA
1 TGATAATGGG-TTAGGTAAATGTTCCA
10870392 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10870418 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10870444 TGAT
1 TGAT
10870448 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
26 45 0.82
27 10 0.18
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10871960 original size:26 final size:26
Alignment explanation
Indices: 10871931--10871983 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10871921 TTTACAGTTT
10871931 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
10871957 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
10871983 T
1 T
10871984 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:10887775 original size:60 final size:62
Alignment explanation
Indices: 10887676--10887823 Score: 198
Period size: 60 Copynumber: 2.4 Consensus size: 62
10887666 ACTGTGTTAC
* * *
10887676 TATGGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTATGGCCCAGATTAATACTGA
1 TATGGGCTAGGCCCAGTATACTCTGATACTTGTAATAGGGCTATGGCCCAGATTAATACTGA
* *
10887736 TATGGGCTAGGCCCAGTATACTCTGATA-TTGTAA-GGGGCTATGGCCCAGATTAATATTGA
1 TATGGGCTAGGCCCAGTATACTCTGATACTTGTAATAGGGCTATGGCCCAGATTAATACTGA
10887796 TATGGGCTAAGGCCCAGT-TAACTCTGAT
1 TATGGGCT-AGGCCCAGTAT-ACTCTGAT
10887824 TTCTGAATAG
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
60 51 0.65
61 27 0.34
62 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (62 bp):
TATGGGCTAGGCCCAGTATACTCTGATACTTGTAATAGGGCTATGGCCCAGATTAATACTGA
Found at i:10887802 original size:28 final size:28
Alignment explanation
Indices: 10887711--10887816 Score: 101
Period size: 28 Copynumber: 3.7 Consensus size: 28
10887701 ACTTGTAATA
*
10887711 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTATGGCCCAGATTAATATTGATAT
* *
10887739 GGGCTA-GGCCCAGTATACTCTGATATTG-TAAG
1 GGGCTATGGCCCAG---A-T-TAATATTGAT-AT
10887771 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTATGGCCCAGATTAATATTGATAT
*
10887799 GGGCTAAGGCCCAG-TTAA
1 GGGCTATGGCCCAGATTAA
10887817 CTCTGATTTC
Statistics
Matches: 64, Mismatches: 6, Indels: 17
0.74 0.07 0.20
Matches are distributed among these distances:
27 11 0.17
28 27 0.42
29 2 0.03
30 2 0.03
31 2 0.03
32 13 0.20
33 7 0.11
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (28 bp):
GGGCTATGGCCCAGATTAATATTGATAT
Found at i:10890789 original size:26 final size:26
Alignment explanation
Indices: 10890753--10890812 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
10890743 GAAGCTCTGG
*
10890753 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * * *
10890779 GGAGCCTTTAATCGGGAAGTTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
10890805 AGAGCCAT
1 AGAGCCAT
10890813 ATATCGAGAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:10892712 original size:20 final size:21
Alignment explanation
Indices: 10892665--10892710 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
10892655 GGGGAATAGC
*
10892665 AAAAATTATGAGGGGTATCAA
1 AAAAATTATGAGGAGTATCAA
10892686 AAAAATTATGAGGAAGTA-CAA
1 AAAAATTATGAGG-AGTATCAA
10892707 AAAA
1 AAAA
10892711 TTTCTAGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.57, C:0.04, G:0.20, T:0.20
Consensus pattern (21 bp):
AAAAATTATGAGGAGTATCAA
Found at i:10895489 original size:29 final size:29
Alignment explanation
Indices: 10895456--10895512 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
10895446 TTTCTAGATT
10895456 ATGACCATTGGTGCCATCTCTACTCCAAA
1 ATGACCATTGGTGCCATCTCTACTCCAAA
10895485 ATGACCATTGGTGCCATCTCTACTCCAA
1 ATGACCATTGGTGCCATCTCTACTCCAA
10895513 CTTCATTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
ATGACCATTGGTGCCATCTCTACTCCAAA
Found at i:10897788 original size:33 final size:32
Alignment explanation
Indices: 10897751--10897815 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
10897741 TACCAAAATG
* *
10897751 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGTTAGGTACACTTAGTGT
* * *
10897784 GTACACTTGGAAATGTTAGGTATACTTAGTGT
1 GTACACTTGAAAAGGTTAGGTACACTTAGTGT
10897816 CTACTATATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (32 bp):
GTACACTTGAAAAGGTTAGGTACACTTAGTGT
Found at i:10897841 original size:33 final size:33
Alignment explanation
Indices: 10897804--10897866 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
10897794 AAATGTTAGG
*
10897804 TATACTTAGTGTCTACTA-TATGGAAAGGAAAGT
1 TATACTTAGTGTCTACCACT-TGGAAAGGAAAGT
* *
10897837 TATACTTTGTGTGTACCACTTGGAAAGGAA
1 TATACTTAGTGTCTACCACTTGGAAAGGAA
10897867 TGTACACCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (33 bp):
TATACTTAGTGTCTACCACTTGGAAAGGAAAGT
Found at i:10902074 original size:3 final size:3
Alignment explanation
Indices: 10902068--10902114 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
10902058 TATGTAAATA
* *
10902068 AAT AAT AAT AGAT AA- AAT AAT AAT AAT GAT AGT AAT AAT AAAT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
10902114 A
1 A
10902115 TATATACAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 2 0.05
3 29 0.78
4 6 0.16
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:10902083 original size:18 final size:17
Alignment explanation
Indices: 10902063--10902113 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
10902053 AAACATATGT
10902063 AAATAAATAATAATAGATA
1 AAAT-AATAATAAT-GATA
10902082 AAATAATAATAATGATA
1 AAATAATAATAATGATA
*
10902099 GTAATAATAAATAAT
1 -AAATAAT-AATAAT
10902114 ATATATACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 4 0.14
18 15 0.52
19 10 0.34
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
AAATAATAATAATGATA
Found at i:10905411 original size:27 final size:27
Alignment explanation
Indices: 10905373--10905426 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
10905363 CATCCATGTC
10905373 CCATGTACCCTTCTAATGCTCATTTCT
1 CCATGTACCCTTCTAATGCTCATTTCT
10905400 CCATGTACCCTTCTAATGCTCATTTCT
1 CCATGTACCCTTCTAATGCTCATTTCT
10905427 TACTTACCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.33, G:0.07, T:0.41
Consensus pattern (27 bp):
CCATGTACCCTTCTAATGCTCATTTCT
Found at i:10907069 original size:7 final size:7
Alignment explanation
Indices: 10907057--10907089 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
10907047 ACAAAGATTG
10907057 ACAGAGA
1 ACAGAGA
10907064 ACAGAGA
1 ACAGAGA
10907071 ACAGAGA
1 ACAGAGA
10907078 ACAGAGA
1 ACAGAGA
10907085 ACAGA
1 ACAGA
10907090 AAGCAAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.27, T:0.00
Consensus pattern (7 bp):
ACAGAGA
Found at i:10909736 original size:46 final size:46
Alignment explanation
Indices: 10909683--10909773 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
10909673 TTTGGGCATC
10909683 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTA
*
10909729 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
10909774 CCGAGAGATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTA
Found at i:10912402 original size:17 final size:18
Alignment explanation
Indices: 10912370--10912438 Score: 106
Period size: 17 Copynumber: 3.8 Consensus size: 18
10912360 CATATCTTCT
10912370 TAAGATTGCATATCATATC
1 TAAGATTGC-TATCATATC
10912389 TAAGATTG-TATCATATC
1 TAAGATTGCTATCATATC
10912406 TAAGATTGCATATC-TATC
1 TAAGATTGC-TATCATATC
10912424 TAAGATTGCTATCAT
1 TAAGATTGCTATCAT
10912439 TAAGATTATA
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
17 21 0.45
18 14 0.30
19 12 0.26
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (18 bp):
TAAGATTGCTATCATATC
Found at i:10912412 original size:36 final size:36
Alignment explanation
Indices: 10912370--10912438 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
10912360 CATATCTTCT
10912370 TAAGATTGCATATCATATCTAAGATTG-TATCATATC
1 TAAGATTGCATATC-TATCTAAGATTGCTATCATATC
10912406 TAAGATTGCATATCTATCTAAGATTGCTATCAT
1 TAAGATTGCATATCTATCTAAGATTGCTATCAT
10912439 TAAGATTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 12 0.38
36 20 0.62
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (36 bp):
TAAGATTGCATATCTATCTAAGATTGCTATCATATC
Found at i:10912596 original size:21 final size:20
Alignment explanation
Indices: 10912558--10912597 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10912548 TTGGACTTCG
* *
10912558 TTTTTTTTTTTGGTTTATTA
1 TTTTTGTTTTTGGCTTATTA
10912578 TTTTTGTTTTTGGACTTATT
1 TTTTTGTTTTTGG-CTTATT
10912598 TCTGGGCCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.10, C:0.03, G:0.12, T:0.75
Consensus pattern (20 bp):
TTTTTGTTTTTGGCTTATTA
Found at i:10912903 original size:42 final size:42
Alignment explanation
Indices: 10912801--10912967 Score: 140
Period size: 42 Copynumber: 3.8 Consensus size: 42
10912791 GCTATCTTTG
* * *
10912801 ATCTGCTCCC-TCGTCAATACAAGAGATGCCAAATCTGTTATCTTCG
1 ATCTGCTCCCGTC-T-AATAC-AGAGACGCCAAAT-TGCT-TCTTCA
* *
10912847 ATCTGCTCCCGTCTAATATAGATACGCCAAATTGCTTCTTCA
1 ATCTGCTCCCGTCTAATACAGAGACGCCAAATTGCTTCTTCA
* * * *
10912889 ATC-GCTCCCTGTCTAATACAGAGATGCCAAATCTGTTATCTCCG
1 ATCTGCTCCC-GTCTAATACAGAGACGCCAAAT-TGCT-TCTTCA
* *
10912933 ATTTGGCTCCCGTCTAATACAGAGATGCCAAATTG
1 ATCT-GCTCCCGTCTAATACAGAGACGCCAAATTG
10912968 TCATCTTAGA
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 6 0.06
42 27 0.26
43 6 0.06
44 19 0.18
45 26 0.25
46 17 0.17
47 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (42 bp):
ATCTGCTCCCGTCTAATACAGAGACGCCAAATTGCTTCTTCA
Found at i:10912920 original size:86 final size:88
Alignment explanation
Indices: 10912805--10912967 Score: 251
Period size: 87 Copynumber: 1.9 Consensus size: 88
10912795 TCTTTGATCT
* *
10912805 GCTCCCTCGTCAATACAAGAGATGCCAAATCTGTTATCTTCGATCT-GCTCCCGTCTAATATAGA
1 GCTCCCTCGTCAATACAAGAGATGCCAAATCTGTTATCTCCGATCTGGCTCCCGTCTAATACAGA
*
10912869 TACGCCAAATTGCTTCTTCAATC
66 GACGCCAAATTGCTTCTTCAATC
*
10912892 GCTCCCT-GTCTAATAC-AGAGATGCCAAATCTGTTATCTCCGATTTGGCTCCCGTCTAATACAG
1 GCTCCCTCGTC-AATACAAGAGATGCCAAATCTGTTATCTCCGATCTGGCTCCCGTCTAATACAG
*
10912955 AGATGCCAAATTG
65 AGACGCCAAATTG
10912968 TCATCTTAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
86 30 0.43
87 39 0.57
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (88 bp):
GCTCCCTCGTCAATACAAGAGATGCCAAATCTGTTATCTCCGATCTGGCTCCCGTCTAATACAGA
GACGCCAAATTGCTTCTTCAATC
Found at i:10913157 original size:77 final size:77
Alignment explanation
Indices: 10912997--10913252 Score: 363
Period size: 78 Copynumber: 3.3 Consensus size: 77
10912987 ATGTAAACAC
* * *
10912997 ATGAAGGTCAAATCTGCTATGTCTCTGATCTCTCCCCATCTAATACAG-GATGCCAAATCATCTT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
* *
10913061 AGATCTGCTTTA
66 GGATCTGCTTCA
* * *
10913073 ATGAAGGTCA-ATCTGTTATGTTCTTTAATCTCTCCCCGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAGATCTGCTATG-TCTTTGATCTCTCCCCGTCTAATACAGAGATGCCAAATCATCT
10913137 TGGATCTGCTTCA
65 TGGATCTGCTTCA
* * *
10913150 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTTCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATC-TCTCCCCGTCTAATACAGAGATGCCAAATCATCT
10913215 TGGATCTGCTTCA
65 TGGATCTGCTTCA
*
10913228 ATGAAGGTTAGATCTGCTTATGTCT
1 ATGAAGGTCAGATCTGC-TATGTCT
10913253 GATCTGCTCT
Statistics
Matches: 160, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
75 9 0.06
76 34 0.21
77 42 0.26
78 69 0.43
79 6 0.04
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (77 bp):
ATGAAGGTCAGATCTGCTATGTCTTTGATCTCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
GGATCTGCTTCA
Found at i:10921554 original size:18 final size:16
Alignment explanation
Indices: 10921531--10921565 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
10921521 GCTTCCAGAT
10921531 TTTCTTTCTCTTACTCTC
1 TTTCTTTCT-TT-CTCTC
10921549 TTTCTTTCTTTCTCTC
1 TTTCTTTCTTTCTCTC
10921565 T
1 T
10921566 ATTAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 2 0.12
18 9 0.53
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTCTTTCTTTCTCTC
Found at i:10922449 original size:18 final size:18
Alignment explanation
Indices: 10922428--10922468 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
10922418 TTCTCAATCC
*
10922428 TCTTTTCAATCTCCGACT
1 TCTTTTCAATCTCCGAAT
*
10922446 TCTTTTCAATCTCTGAAT
1 TCTTTTCAATCTCCGAAT
10922464 TCTTT
1 TCTTT
10922469 CTCTCGAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.27, G:0.05, T:0.51
Consensus pattern (18 bp):
TCTTTTCAATCTCCGAAT
Found at i:10925361 original size:23 final size:22
Alignment explanation
Indices: 10925317--10925374 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
10925307 AAAAGGTATC
* *
10925317 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
10925338 TACAAAATCATATCTTCTATGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
10925361 TGCATATCATATCT
1 TACAAATCATATCT
10925375 AAGATTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.60
23 9 0.30
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:10925380 original size:19 final size:19
Alignment explanation
Indices: 10925353--10925425 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
10925343 AATCATATCT
*
10925353 TCTATGATTGCATATCATA
1 TCTAAGATTGCATATCATA
10925372 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
10925389 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
10925408 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
10925426 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
17 17 0.34
19 33 0.66
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:10925432 original size:36 final size:36
Alignment explanation
Indices: 10925358--10925433 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
10925348 TATCTTCTAT
*
10925358 GATTGCATATCATATCTAAGATTGTATCATATCTAA
1 GATTGCATATCATATCTAAGATTGTATCATATCGAA
*
10925394 GATTGTATATCATATCTAAGATTGCATATCAT-T-GAA
1 GATTGCATATCATATCTAAGATTG--TATCATATCGAA
10925430 GATT
1 GATT
10925434 ATATTTCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
36 29 0.81
37 1 0.03
38 6 0.17
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (36 bp):
GATTGCATATCATATCTAAGATTGTATCATATCGAA
Found at i:10925433 original size:17 final size:19
Alignment explanation
Indices: 10925358--10925433 Score: 88
Period size: 19 Copynumber: 4.2 Consensus size: 19
10925348 TATCTTCTAT
*
10925358 GATTGCATATCATATCTAA
1 GATTGCATATCATATCGAA
*
10925377 GATTG--TATCATATCTAA
1 GATTGCATATCATATCGAA
* *
10925394 GATTGTATATCATATCTAA
1 GATTGCATATCATATCGAA
10925413 GATTGCATATCAT-T-GAA
1 GATTGCATATCATATCGAA
10925430 GATT
1 GATT
10925434 ATATTTCCAT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 23 0.43
18 1 0.02
19 29 0.55
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (19 bp):
GATTGCATATCATATCGAA
Found at i:10925582 original size:21 final size:20
Alignment explanation
Indices: 10925543--10925583 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
10925533 CTTGGACTTC
**
10925543 ATTTTTTTTTTGGGTTTATT
1 ATTTTTTTTTTGGACTTATT
10925563 ATTTTTGTTTTTGGACTTATT
1 ATTTTT-TTTTTGGACTTATT
10925584 TCTGGGCCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.02, G:0.15, T:0.71
Consensus pattern (20 bp):
ATTTTTTTTTTGGACTTATT
Found at i:10925778 original size:17 final size:18
Alignment explanation
Indices: 10925745--10925779 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10925735 TTGAATTCTA
10925745 TTTGAAAAGAAACATCAT
1 TTTGAAAAGAAACATCAT
*
10925763 TTTGAATAGAAA-ATCAT
1 TTTGAAAAGAAACATCAT
10925780 GAAGTTGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (18 bp):
TTTGAAAAGAAACATCAT
Found at i:10926536 original size:10 final size:10
Alignment explanation
Indices: 10926521--10926546 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10926511 AATGAACTAA
10926521 CATTTTACAG
1 CATTTTACAG
10926531 CATTTTACAG
1 CATTTTACAG
10926541 CATTTT
1 CATTTT
10926547 CTCGAGGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.46
Consensus pattern (10 bp):
CATTTTACAG
Found at i:10929067 original size:12 final size:11
Alignment explanation
Indices: 10929043--10929072 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
10929033 CATTTTGTTC
10929043 TTTAGTTTCTTT
1 TTTA-TTTCTTT
10929055 TTTATTTCTTT
1 TTTATTTCTTT
10929066 TTTATTT
1 TTTATTT
10929073 TTGTTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTATTTCTTT
Found at i:10929960 original size:60 final size:60
Alignment explanation
Indices: 10929867--10930000 Score: 259
Period size: 60 Copynumber: 2.2 Consensus size: 60
10929857 TAAGAAATAA
10929867 GTGCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTTAT
1 GTGCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTTAT
10929927 GTGCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTTAT
1 GTGCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTTAT
*
10929987 GTGCATATTTTTTT
1 GTGCATATTATTTT
10930001 TCTTTTCTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 73 1.00
ACGTcount: A:0.19, C:0.07, G:0.15, T:0.59
Consensus pattern (60 bp):
GTGCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTTAT
Found at i:10932725 original size:5 final size:5
Alignment explanation
Indices: 10932710--10932768 Score: 50
Period size: 5 Copynumber: 11.0 Consensus size: 5
10932700 ATTCATCCCA
10932710 TGCATT TGCAT TGCAT TGCACCTT GTGCAT TGCAT TGCA- T-CAT ATGCAT
1 TGCA-T TGCAT TGCAT TGCA---T -TGCAT TGCAT TGCAT TGCAT -TGCAT
10932759 TGCAT TGCAT
1 TGCAT TGCAT
10932769 CATGTGCATT
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
3 2 0.04
4 1 0.02
5 30 0.65
6 8 0.17
8 1 0.02
9 4 0.09
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (5 bp):
TGCAT
Found at i:10932738 original size:19 final size:19
Alignment explanation
Indices: 10932716--10932778 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
10932706 CCCATGCATT
* *
10932716 TGCATTGCATTGCACCTTG
1 TGCATTGCATTGCATCATG
*
10932735 TGCATTGCATTGCATCATA
1 TGCATTGCATTGCATCATG
10932754 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
10932773 TGCATT
1 TGCATT
10932779 AGATTCCCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:10932762 original size:24 final size:24
Alignment explanation
Indices: 10932696--10932768 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
10932686 TTTCTTTCCT
*
10932696 TTGCATT-CATCCCATGCATTTGCA
1 TTGCATTGCATCCTATGCA-TTGCA
10932720 TTGCATTGCA-CCT-TG---TGCA
1 TTGCATTGCATCCTATGCATTGCA
*
10932739 TTGCATTGCATCATATGCATTGCA
1 TTGCATTGCATCCTATGCATTGCA
10932763 TTGCAT
1 TTGCAT
10932769 CATGTGCATT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
19 14 0.34
20 2 0.05
21 2 0.05
23 2 0.05
24 19 0.46
25 2 0.05
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (24 bp):
TTGCATTGCATCCTATGCATTGCA
Found at i:10936871 original size:138 final size:138
Alignment explanation
Indices: 10936692--10938146 Score: 2299
Period size: 138 Copynumber: 10.6 Consensus size: 138
10936682 CGGTGAATTC
* *
10936692 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* *
10936757 GTTGCAGTGGAATAGATTGAAGCTAAATTACAGATATTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
10936822 TCGAAGTT
131 TCGAAGTT
* * * * *
10936830 ACAAGTCATATCTCCCTGAAGTTGCAGTAGAGCATATTGAAGATAGCAAATCTTATTTTCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* *
10936895 GTTGCAGTGGAACAGATTGAAGCTAAATTATAGATTTTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
*
10936960 TCAAAGTT
131 TCGAAGTT
* *
10936968 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* *
10937033 GTTGCAGTGGAACAGATTGAAGCTAAATTACGGATCTTATCTCTCTGAAGTTGCAGTAGAACAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
*
10937098 TCAAAGTT
131 TCGAAGTT
* * * *
10937106 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGACTGAAGATAGTAAATCATATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
10937171 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
10937236 TCGAAGTT
131 TCGAAGTT
* * *
10937244 ACCAA-TCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGATAGAAAATCTTATTTCCCTGA
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGA
* *
10937308 AGTTGTAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAG
65 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
*
10937373 GTCAAAGTT
130 GTCGAAGTT
* * *
10937382 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGATAGAAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* *
10937447 GTTGCAGTGGAACAGCTTGAAGCTAAATTACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
*
10937512 TCAAAGTT
131 TCGAAGTT
* *
10937520 ACAAGTCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* * *
10937585 GTTGCAGTGGAACAGATTGAAGCTAAGTTACA-AGTCTTATCTCTCTGAAATTGCAATAGAGCAG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGA-TCTTATCTCTCTGAAGTTGCAGTAGAGCAG
10937649 GTCGAAGTT
130 GTCGAAGTT
* * *
10937658 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGTAAATCTTATTTTCCTAAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* * *
10937723 GTTACAGTGGAATAGATTTAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
10937788 TCGAAGTT
131 TCGAAGTT
* *
10937796 ACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* * * * *
10937861 GTTACAGTAGAACAAATTGAAACTAAATTACAGATCTTATCTCTCTGAAGTTGCTA-TAGAGTAG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGC-AGTAGAGCAG
10937925 GTCGAAGTT
130 GTCGAAGTT
*
10937934 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
*
10937999 GTTGCAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
10938064 TCGAAGTT
131 TCGAAGTT
* * * * * * *
10938072 ACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAG-GTCGAAGTTA-TAAGTCTTATCTCCCTGA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCAAATCTTATTTCCCTGA
10938135 AGTTGCAGTGGA
65 AGTTGCAGTGGA
10938147 GTAGACTGAA
Statistics
Matches: 1218, Mismatches: 92, Indels: 15
0.92 0.07 0.01
Matches are distributed among these distances:
137 32 0.03
138 1181 0.97
139 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (138 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
TCGAAGTT
Found at i:10938081 original size:458 final size:458
Alignment explanation
Indices: 10937609--10938543 Score: 1566
Period size: 458 Copynumber: 2.0 Consensus size: 458
10937599 GATTGAAGCT
10937609 AAGTTACAAGTCTTATCTCTCTGAAATTGCAATAGAGCAGGTCGAAGTTACAAGTCTTATCTCCC
1 AAGTTACAAGTCTTATCTCTCTGAAATTGCAATAGAGCAGGTCGAAGTTACAAGTCTTATCTCCC
* *
10937674 TGAAGTTGCAGTGGAGCAGACTGAAGATAGTAAATCTTATTTTCCTAAAGTTACAGTGGAATAGA
66 TGAAGTTGCAGTGGAGCAGACTGAAGAAAGTAAATCTTATTTTCCTAAAGTTACAGTGGAACAGA
* *
10937739 TTTAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCT
131 TTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGGTCGAAGTTACAAGTCT
* * * *
10937804 TATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTACAGT
196 TATCTCCCTAAAGTTGCAGTGGAGCAGAATGAAGATAGTAAATCATATTTCCCTGAAGTTACAGT
* *
10937869 AGAACAAATTGAAACTAAATTACAGATCTTATCTCTCTGAAGTTGCTA-TAGAGTAGGTCGAAGT
261 AGAACAAATTGAAACTAAATTACAGATCTTATCTCTCTGAAGTTGC-AGTAGAGCAGGTCAAAGT
*
10937933 TACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGA
325 TACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAAAATCATATTTCCCTGA
10937998 AGTTGCAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
390 AGTTGCAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
*
10938063 GTCG
455 GTCA
* * *
10938067 AAGTTACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTATAAGTCTTATCTCCC
1 AAGTTACAAGTCTTATCTCTCTGAAATTGCAATAGAGCAGGTCGAAGTTACAAGTCTTATCTCCC
* * *
10938132 TGAAGTTGCAGTGGAGTAGACTGAAGAAAGTAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGA
66 TGAAGTTGCAGTGGAGCAGACTGAAGAAAGTAAATCTTATTTTCCTAAAGTTACAGTGGAACAGA
*
10938197 TTGAAGCTAAATTACGGATCTTATCTCTCTGAAGTTGCAGTAGAACAGGTCGAAGTTACAAGTCT
131 TTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGGTCGAAGTTACAAGTCT
* *
10938262 TATCTCCCTAAAGTTGCAGTGGAGTAGAATGAAGATAGTAAATCATATTTCCCTGAAGTTGCAGT
196 TATCTCCCTAAAGTTGCAGTGGAGCAGAATGAAGATAGTAAATCATATTTCCCTGAAGTTACAGT
* * *
10938327 GGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTT
261 AGAACAAATTGAAACTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTT
* * * * *
10938392 ACCAGTCTTATCTCCCTGAAGTTGCAGTTGAGTAGATTGAAGATAGAAAATCTTATTTCCCTGAA
326 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAAAATCATATTTCCCTGAA
* * *
10938457 GTTGTAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGG
391 GTTGCAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
10938522 TCA
456 TCA
10938525 AAGTTACAAGTCTTATCTC
1 AAGTTACAAGTCTTATCTC
10938544 CTTGAAGTTC
Statistics
Matches: 444, Mismatches: 32, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
457 1 0.00
458 443 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (458 bp):
AAGTTACAAGTCTTATCTCTCTGAAATTGCAATAGAGCAGGTCGAAGTTACAAGTCTTATCTCCC
TGAAGTTGCAGTGGAGCAGACTGAAGAAAGTAAATCTTATTTTCCTAAAGTTACAGTGGAACAGA
TTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGGTCGAAGTTACAAGTCT
TATCTCCCTAAAGTTGCAGTGGAGCAGAATGAAGATAGTAAATCATATTTCCCTGAAGTTACAGT
AGAACAAATTGAAACTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTT
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAAAATCATATTTCCCTGAA
GTTGCAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
TCA
Found at i:10938219 original size:138 final size:138
Alignment explanation
Indices: 10937939--10939294 Score: 1940
Period size: 138 Copynumber: 9.8 Consensus size: 138
10937929 AAGTTACAAG
* * * * * * *
10937939 TCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATAGCAAATCATATTTCCCTGAAGTTG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTC-GAAGTTA-CAAGTCTTATCTCCCTGAAGTTG
* * * * * * * * * * *
10938003 CAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGA
64 CAGTGGAGCAGACTGAAG--ATAGTA-A-ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGA
10938068 AG-----TTACA-A
125 AGCTAAATTACAGA
*
10938076 GTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTATAAGTCTTATCTCCCTGAAGTTGC
1 -TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGC
* * *
10938141 AGTGGAGTAGACTGAAGAAAGTAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTA
65 AGTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTA
*
10938206 AATTACGGA
130 AATTACAGA
* *
10938215 TCTTATCTCTCTGAAGTTGCAGTAGAACAGGTCGAAGTTACAAGTCTTATCTCCCTAAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
* * *
10938280 GTGGAGTAGAATGAAGATAGTAAATCATATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
66 GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
10938345 ATTACAGA
131 ATTACAGA
* *
10938353 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTTACCAGTCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
* * * * *
10938418 GTTGAGTAGATTGAAGATAGAAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTAA
66 GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
10938483 ATTACAGA
131 ATTACAGA
* * * *
10938491 TCTTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAAAGTTACAAGTCTTATCTCCTTGAAGTTCCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
* * *
10938556 GTGGAGCAGACTGATGATAGAAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTAA
66 GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
10938621 ATTACAGA
131 ATTACAGA
* *
10938629 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTTACAAGTCTTATCTCCTTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
*
10938694 GTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
66 GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
*
10938759 GTTACA-A
131 ATTACAGA
* *
10938766 GTCTTATCTCTCTGAAATTGCAATAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGC
1 -TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGC
* * * * *
10938831 AGTGGAGCAGACTGAAGATAGTAAATCTTATTTTCCTAAAGTTACAGTGGAATAGATTTAAGCTA
65 AGTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTA
10938896 AATTACAGA
130 AATTACAGA
*
10938905 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGTA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
* * *
10938970 GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTACAGTAGAACAAATTGAAGCTAA
66 GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
10939035 ATTACAGA
131 ATTACAGA
* *
10939043 TCTTATCTCTCTGAAGTTGCAATAGAGTAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
* * * *
10939108 GTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTAA
66 GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
10939173 ATTACAGA
131 ATTACAGA
*
10939181 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
* * * * *
10939246 GTAGAGCAG-GTCGAAGTTA-TAAGTCTTATCTCCCTGAAGTTGCAGTGGA
66 GTGGAGCAGACT-GAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGA
10939295 GTAGACTGAA
Statistics
Matches: 1117, Mismatches: 91, Indels: 21
0.91 0.07 0.02
Matches are distributed among these distances:
133 31 0.03
134 1 0.00
135 5 0.00
137 61 0.05
138 1015 0.91
139 4 0.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (138 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
ATTACAGA
Found at i:10938221 original size:276 final size:272
Alignment explanation
Indices: 10936692--10939291 Score: 2133
Period size: 276 Copynumber: 9.4 Consensus size: 272
10936682 CGGTGAATTC
* * * * * * * *
10936692 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCA-GACTGAAGATAGCAAATCATATTTCCCTGA
1 ACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTC-GAAGTTA-CAAGTCTTATCTCCCTGA
* * * *
10936756 AGTTGCAGTGGAATAGATTGAAGCTAAATTACAGATATTATCTCTCTGAAGTTGCAGTAGAGCAG
64 AGTTGCAGTGGAACAGATTGAAG--AAAGTACA-ATCTTATCTCTCTGAAGTTGCAGTAGAACAG
* * * * * *
10936821 GTCGAAGTTACAAGTCATATCTCCCTGAAGTTGCAGTAGAGCATATTGAAGATAGCAAATCTTAT
126 ATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTTAT
* * *
10936886 TTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTATAGATTTTATCTCTCTGAAGTTGCAG
191 TTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAG
*
10936951 TAGAGCAGGTCAAAGTT
256 TAGAGCAGGTCGAAGTT
* * * *
10936968 ACAAGTCTTATCTC-CTTGAAGTTGCAGTGGAGCA-GACTGAA-TATAGCAAATCTTATTTCCCT
1 ACAAGTCTTATCTCTC-TGAAGTTGCAGTAGAGCAGGTC-GAAGT-TA-CAAGTCTTATCTCCCT
* *
10937030 GAAGTTGCAGTGGAACAGATTGAAGCTAAATTACGGATCTTATCTCTCTGAAGTTGCAGTAGAAC
62 GAAGTTGCAGTGGAACAGATTGAAG--AAAGTAC-AATCTTATCTCTCTGAAGTTGCAGTAGAAC
* * * * * * * * *
10937095 AGGTCAAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGACTGAAGATAGTAAATCAT
124 AGATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTT
10937160 ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGC
189 ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGC
10937225 AGTAGAGCAGGTCGAAGTT
254 AGTAGAGCAGGTCGAAGTT
* * * * * * * *
10937244 ACCAA-TCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGATAGAAAATCTTATTTCCCTGA
1 A-CAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTA-CAAGTCTTATCTCCCTGA
* * * *
10937308 AGTTGTAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAG
64 AGTTGCAGTGGAACAGATTGAAG--AAAGTACA-ATCTTATCTCTCTGAAGTTGCAGTAGAACAG
* * * * * * * *
10937373 GTCAAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGATAGAAAATCTTAT
126 ATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTTAT
* *
10937438 TTCCCTGAAGTTGCAGTGGAACAGCTTGAAGCTAAATTACAGATCTTATCTCTTTGAAGTTGCAG
191 TTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAG
*
10937503 TAGAGCAGGTCAAAGTT
256 TAGAGCAGGTCGAAGTT
* * * *
10937520 ACAAGTCTTATCTC-CTTGAAGTTGCAGTAGAGCA-GACTGAAGATAGCAAATCTTATTTCCCTG
1 ACAAGTCTTATCTCTC-TGAAGTTGCAGTAGAGCAGGTC-GAAGTTA-CAAGTCTTATCTCCCTG
* * * *
10937583 AAGTTGCAGTGGAACAGATTGAAGCTAAGTTACAAGTCTTATCTCTCTGAAATTGCAATAGAGCA
63 AAGTTGCAGTGGAACAGATTGAAG-AAAG-TACAA-TCTTATCTCTCTGAAGTTGCAGTAGAACA
* * * * *
10937648 GGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGTAAATCTTA
125 GATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTTA
* * * * *
10937713 TTTTCCTAAAGTTACAGTGGAATAGATTTAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCA
190 TTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCA
10937778 GTAGAGCAGGTCGAAGTT
255 GTAGAGCAGGTCGAAGTT
* * * * * * * *
10937796 ACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCA-GACTGAAGATAGTAAATCTTATTTCCCTGA
1 ACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTC-GAAGTTA-CAAGTCTTATCTCCCTGA
* * * * * **
10937860 AGTTACAGTAGAACAAATTGAAACTAAATTACAGATCTTATCTCTCTGAAGTTGCTA-TAGAGTA
64 AGTTGCAGTGGAACAGATTG-AA-GAAAGTACA-ATCTTATCTCTCTGAAGTTGC-AGTAGAACA
* * * * *
10937924 GGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATA
125 GATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTTA
*
10937989 TTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCA
190 TTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCA
10938054 GTAGAGCAGGTCGAAGTT
255 GTAGAGCAGGTCGAAGTT
*
10938072 ACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTATAAGTCTTATCTCCCTGAAG
1 ACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAG
** * * * *
10938137 TTGCAGTGGAGTAGACTGAAGAAAGTA-AATCTTAT-TTTCCTGAAGTTGCAGTGGAACAGATTG
66 TTGCAGTGGAACAGATTGAAGAAAGTACAATCTTATCTCT-CTGAAGTTGCAGTAGAACAGATCG
* * * * *
10938200 AAGCTAAATTACGGATCTTATCTCTCTGAAGTTGCAGTAGAACAG-GTCGAAGTTA-CAAGTCTT
130 AAGCTAAA--A--G-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACT-GAAGATAGCAAATCTT
* * ** * * * * * *
10938263 ATCTCCCTAAAGTTGCAGTGGAGTAGAATGAAG--ATAGTA-A-ATCATATTTCCCTGAAGTTGC
189 ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGC
* * * *
10938324 AGTGGAACAGATTGAAGCTAAATT
254 AGTAGAGCAGGTCGAAG-----TT
* *
10938348 AC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTTACCAGTCTTATCTCCCTGAA
1 ACAAG-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAA
* ** * * * * * * *
10938412 GTTGCAGTTGAGTAGATTGAAGATAG-AAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTG
65 GTTGCAGTGGAACAGATTGAAGAAAGTACAATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCG
* * * * * *
10938476 AAGCTAAATTACAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAG-GTCAAAGTTA-CAAGTCTT
130 AAGCT-AA--A-AG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACT-GAAGATAGCAAATCTT
* * * * * * * * * * *
10938539 ATCTCCTTGAAGTTCCAGTGGAGCAGACTGATGATAGA--A-A-ATCTTATTTCCCTGAAGTTGT
189 ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGC
* * * *
10938600 AGTGGAACAGATTGAAGCTAAATT
254 AGTAGAGCAGGTCGAAG-----TT
* *
10938624 AC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTTACAAGTCTTATCTCCTTGAA
1 ACAAG-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAA
* * * * * * * *
10938688 GTTGCAGTGGAGCAGACTGAAGATAGCA-AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTG
65 GTTGCAGTGGAACAGATTGAAGAAAGTACAATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCG
* * * * * *
10938752 AAGCTAAGTTACAAGTCTTATCTCTCTGAAATTGCAATAGAGCAG-GTCGAAGTTA-CAAGTCTT
130 AAGCT-A---A-AAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACT-GAAGATAGCAAATCTT
* * * * * * * *
10938815 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--ATAGTA-A-ATCTTAT-TTTCCTAAAGTTA
189 ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCT-CTGAAGTTG
* ** * * *
10938875 CAGTGGAATAGATTTAAGCTAAATT
253 CAGTAGAGCAG--GT---CGAAGTT
10938900 AC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAA
1 ACAAG-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAA
* * * * * * * * *
10938964 GTTGTAGTGGAGCAGACTGAAGATAGTA-AATCTTATTTCCCTGAAGTTACAGTAGAACAAATTG
65 GTTGCAGTGGAACAGATTGAAGAAAGTACAATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCG
* * * * * *
10939028 AAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAATAGAGTAG-GTCGAAGTTA-CAAGTCTT
130 AAGCT-AA--A-AG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACT-GAAGATAGCAAATCTT
* ** * * * * *
10939091 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAG----A-TAGCAAATCATATTTCCCTGAAGTTG
189 ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTA-CAGATCTTATCTCTCTGAAGTTG
* * ** *
10939151 CAGTGGAACAAATTGAAGCTAAATT
253 CAGTAGAGCAGGTCGAAG-----TT
*
10939176 AC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCTCTGAA
1 ACAAG-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAA
* * * * ** * *
10939240 GTTGCAGTAGAGCAGGTCGAAGTTA-TA-AGTCTTATCTCCCTGAAGTTGCAGT
65 GTTGCAGTGGAACAGATTGAAGAAAGTACAATCTTATCTCTCTGAAGTTGCAGT
10939292 GGAGTAGACT
Statistics
Matches: 2054, Mismatches: 206, Indels: 129
0.86 0.09 0.05
Matches are distributed among these distances:
270 3 0.00
271 63 0.03
272 2 0.00
273 13 0.01
274 7 0.00
275 104 0.05
276 1833 0.89
277 20 0.01
278 5 0.00
279 2 0.00
281 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (272 bp):
ACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAG
TTGCAGTGGAACAGATTGAAGAAAGTACAATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCGA
AGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTTATTTCCC
TGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAG
CAGGTCGAAGTT
Found at i:10938221 original size:414 final size:412
Alignment explanation
Indices: 10936692--10939112 Score: 2152
Period size: 414 Copynumber: 5.8 Consensus size: 412
10936682 CGGTGAATTC
* *
10936692 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
* *
10936757 GTTGCAGTGGAATAGATTGAAGCTAAATTACAGATATTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACA-ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
* ** * *
10936822 TCGAAGTTACAAGTCATATCTCCCTGAAGTTGCAGTAGAGCATATTGAAGATAGCAAATCTTATT
130 TCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGCAAATCTTATC
* * * * *
10936887 TTCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTATAGATTTTATCTCTCTGAAGTTGCAGT
195 TCCCTGAAGTTGCAGTGGAACAGACTGAAGC-AAAGTACAGATCTTATCTCTCTGAAGTTGCAGT
* * * * * * *
10936952 AGAGCAGGTCAAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAATATAGCAA
259 AGAACAGATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAA
* *
10937017 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACGGATCTTATCTCTCTGAA
324 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAACTAAATTACAGATCTTATCTCTCTGAA
**
10937082 GTTGC-AGTAGAACAGGTCAAAGTT
389 GTTGCTA-TAGAGTAGGTCAAAGTT
* * * *
10937106 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGACTGAAGATAGTAAATCATATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
10937171 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACA-ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
* * * *
10937236 TCGAAGTTACCAA-TCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGATAGAAAATCTTAT
130 TCGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGCAAATCTTAT
* * * * *
10937300 TTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGTAG
194 CTCCCTGAAGTTGCAGTGGAACAGACTGAAGC-AAAGTACAGATCTTATCTCTCTGAAGTTGCAG
* * * * * * * *
10937365 TAGAGCAGGTCAAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGATAGAA
258 TAGAACAGATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
* * *
10937430 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGCTTGAAGCTAAATTACAGATCTTATCTCTTTGA
323 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAACTAAATTACAGATCTTATCTCTCTGA
*
10937495 AGTTGC-AGTAGAGCAGGTCAAAGTT
388 AGTTGCTA-TAGAGTAGGTCAAAGTT
* *
10937520 ACAAGTCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
* * *
10937585 GTTGCAGTGGAACAGATTGAAGCTAAGTTACAAGTCTTATCTCTCTGAAATTGCAATAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAA-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
* * *
10937650 TCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATAGTAAATCTTAT
130 TCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTC-GAAGATAGCAAATCTTAT
* * * * * * * *
10937714 TTTCCTAAAGTTACAGTGGAATAGATTTAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAG
194 CTCCCTGAAGTTGCAGTGGAACAGACTGAAGC-AAAGTACAGATCTTATCTCTCTGAAGTTGCAG
* * * * * *
10937779 TAGAGCAGGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGTA
258 TAGAACAGATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
* * *
10937844 AATCTTATTTCCCTGAAGTTACAGTAGAACAAATTGAAACTAAATTACAGATCTTATCTCTCTGA
323 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAACTAAATTACAGATCTTATCTCTCTGA
*
10937909 AGTTGCTATAGAGTAGGTCGAAGTT
388 AGTTGCTATAGAGTAGGTCAAAGTT
*
10937934 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
*
10937999 GTTGCAGTGGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACA-ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGG
* * * *
10938064 TCGAAGTTACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTA-TAAGTCTTATC
130 TCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGCAAATCTTATC
** *
10938128 TCCCTGAAGTTGCAGTGGAGTAGACTGAAG-AAAGTA-A-ATCTTAT-TTTCCTGAAGTTGCAGT
195 TCCCTGAAGTTGCAGTGGAACAGACTGAAGCAAAGTACAGATCTTATCTCT-CTGAAGTTGCAGT
* * * * * * *
10938189 GGAACAGATTGAAGCTAAATTACGGATCTTATCTCTCTGAAGTTGCAGTAGAACAG-GTCGAAGT
259 AGAACAGATCGAAGCTAAA--A--G-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGA
* * * ** * * * *
10938253 TA-CAAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGAATGAAGA-T--AGTA-A-ATCATATTT
318 TAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAA-ACTAAATTACAGATCTTATCT
* * * *
10938312 CCCTGAAGTTGCAGTGGAACAGATTGAAG-CTAAA-TT
382 CTCTGAAGTTGC--T---ATAGAGT-AGGTC-AAAGTT
* * * * * * * *
10938348 AC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG-GTCAAAGTTA-CCAGTCTTATCTCCCTG
1 ACAAG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACT-GAAGATAGCAAATCATATTTCCCTG
* ** * * * * * * *
10938410 AAGTTGCAGTTGAGTAGATTGAAGATAGA--A-AATCTTATTTCCCTGAAGTTGTAGTGGAACAG
64 AAGTTGCAGTGGAACAGATTGAAGCTAAATTACAATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
* * * * * * *
10938472 ATTGAAGCTAAATTAC-AGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAAAGTTA-CAAG
129 GTCGAAG-----TTACAAG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGCAAA
* * * * * * * *
10938535 TCTTATCTCCTTGAAGTTCCAGTGGAGCAGACTGATG-ATAG-A-AAATCTTATTTCCCTGAAGT
188 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGCAAAGTACAGATCTTATCTCTCTGAAGT
* * * * * *
10938597 TGTAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG-GT
253 TGCAGTAGAACAGATCGAAGCT-AA--A-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
* * * * * * * * *
10938661 CAAAGTTA-CAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGA-T--A--GCAAATC
313 -GAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAA-ACTAAATTACAGATC
* * * * * *
10938720 TTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG-CTAAGTT
376 TTATCTCTCTGAAGTTGC--T---ATAGAGT-AGGTCAAAGTT
* * * * * * * *
10938762 ACAAGTCTTATCTCTCTGAAATTGCAATAGAGCAG-GTCGAAGTTA-CAAGTCTTATCTCCCTGA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACT-GAAGATAGCAAATCATATTTCCCTGA
* * * * * * * * **
10938825 AGTTGCAGTGGAGCAGACTGAAG--ATAGTA-AATCTTAT-TTTCCTAAAGTTACAGTGGAATAG
65 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAATCTTATCTCT-CTGAAGTTGCAGTAGAGCAG
* * * * * *
10938886 ATTTAAGCTAAATTAC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTA-CAAG
129 --GT---CGAAGTTACAAG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGCAAA
* * * * *
10938949 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAG-ATAGTA-A-ATCTTATTTCCCTGAAGT
188 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGCAAAGTACAGATCTTATCTCTCTGAAGT
* * * * * * * *
10939011 TACAGTAGAACAAATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAATAGAGTAG-GT
253 TGCAGTAGAACAGATCGAAGCT-AA--A-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
* * *
10939075 CGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGA
313 -GAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGA
10939113 GTAGACTGAA
Statistics
Matches: 1779, Mismatches: 180, Indels: 96
0.87 0.09 0.05
Matches are distributed among these distances:
408 2 0.00
409 82 0.05
410 3 0.00
411 11 0.01
412 2 0.00
413 117 0.07
414 1539 0.87
415 18 0.01
416 2 0.00
417 1 0.00
419 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (412 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAATCATATTTCCCTGAA
GTTGCAGTGGAACAGATTGAAGCTAAATTACAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGT
CGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGCAAATCTTATCT
CCCTGAAGTTGCAGTGGAACAGACTGAAGCAAAGTACAGATCTTATCTCTCTGAAGTTGCAGTAG
AACAGATCGAAGCTAAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAAT
CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAACTAAATTACAGATCTTATCTCTCTGAAGT
TGCTATAGAGTAGGTCAAAGTT
Found at i:10939467 original size:45 final size:45
Alignment explanation
Indices: 10939269--10939477 Score: 113
Period size: 45 Copynumber: 4.6 Consensus size: 45
10939259 AAGTTATAAG
* * * *
10939269 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGTAAA
1 TCTTATTTTCCTGAAGTTACAGTGGAGTAAACTGAAGATAGTAAA
** ** * * * *
10939314 TCTTATTTTCCTGAAGTTGTAGTGGAACAGATTGAAGCTAAATTACAGA
1 TCTTATTTTCCTGAAGTTACAGTGGAGTAAACTGAAG--ATAGTA-A-A
* * * * ** *
10939363 TCTTA-TCTCTCTAAAGTTACAGTAGAG-CAGGTCGAAGTTA--AAA
1 TCTTATTTTC-CTGAAGTTACAGTGGAGTAAACT-GAAGATAGTAAA
* *
10939406 GTCTTA-TCTCCTTGAAGTTATAGTGGAGTAAACTGAAGATAGTAAA
1 -TCTTATTTTCC-TGAAGTTACAGTGGAGTAAACTGAAGATAGTAAA
*
10939452 TCTTATTTTCCTGAAGTTGCAGTGGA
1 TCTTATTTTCCTGAAGTTACAGTGGA
10939478 ACAGATTGAT
Statistics
Matches: 122, Mismatches: 30, Indels: 24
0.69 0.17 0.14
Matches are distributed among these distances:
43 2 0.02
44 29 0.24
45 52 0.43
46 7 0.06
47 5 0.04
48 5 0.04
49 22 0.18
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (45 bp):
TCTTATTTTCCTGAAGTTACAGTGGAGTAAACTGAAGATAGTAAA
Found at i:10939507 original size:414 final size:411
Alignment explanation
Indices: 10938077--10939523 Score: 1666
Period size: 414 Copynumber: 3.5 Consensus size: 411
10938067 AAGTTACAAG
* ** * * *
10938077 TCTTATCTCTCTGAAGTTGCAGTAGAGCAG-GTCG-AAGTTATAAGTCTTATCTCCCTGAAGTTG
1 TCTTATCTCTCTGAAGTTGTAGTAGAGCAGTGAAGCAAATTACAAGTCTTATCT-CCTGAAGTTA
* * * ** *
10938140 CAGTGGAGTAGACTGAAGAAAGTAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCT
65 CAGTGGAGCAGACTGAAGATAG-AAATCTTATTTCCCTGAAGTTATAGTGGAACAAATTGAAGC-
* *
10938205 AAATTACGGATCTTATCTCTCTGAAGTTGCAGTAGAACAG-GTCGAAGTTACAAGTCTTATCTCC
128 AAATTACAGATCTTATCTCTCTGAAGTTGCAGT-GAACAGTGTC-AAATTACAAGTCTTATCTCC
* * *
10938269 CTAAAGTTGCAGTGGAGTAGAATGAAGATAGTAAATCATATTTCCCTGAAGTTGCAGTGGAACAG
191 CTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTGAAGTTGCAGTGGAACAG
* *
10938334 ATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTTACCAGTC
256 ATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTC
* * * * * *
10938399 TTATCTCCCTGAAGTTGCAGTTGAGTAGATTGAAGATAGAAAATCTTATTTCCCTGAAGTTGTAG
321 TTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAG
*
10938464 TGGAACAGATTGAAGCTAAATTACAGA
386 TGGAATAGATTGAAGC-AAATTACAGA
*
10938491 TCTTATCTCTCTGAAGTTGTAGTAGAGCAG-G--TCAAAGTTACAAGTCTTATCTCCTTGAAGTT
1 TCTTATCTCTCTGAAGTTGTAGTAGAGCAGTGAAGCAAA-TTACAAGTCTTATCTCC-TGAAGTT
* * * *
10938553 CCAGTGGAGCAGACTGATGATAGAAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGC
64 ACAGTGGAGCAGACTGAAGATAG-AAATCTTATTTCCCTGAAGTTATAGTGGAACAAATTGAAGC
*
10938618 TAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG-GTCAAAGTTACAAGTCTTATCTC
128 -AAATTACAGATCTTATCTCTCTGAAGTTGCAGT-GAACAGTGTCAAA-TTACAAGTCTTATCTC
* * *
10938682 CTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACA
190 CCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTGAAGTTGCAGTGGAACA
* * *
10938747 GATTGAAGCTAAGTTACA-AGTCTTATCTCTCTGAAATTGCAATAGAGCAGGTCGAAGTTACAAG
255 GATTGAAGCTAAATTACAGA-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAG
* * * * *
10938811 TCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATAGTAAATCTTATTTTCCTAAAGTTA
319 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTC-GAAGATAGTAAATCTTATTTCCCTGAAGTTG
*
10938875 CAGTGGAATAGATTTAAGCTAAATTACAGA
383 CAGTGGAATAGATTGAAGC-AAATTACAGA
* ** * *
10938905 TCTTATCTCTCTGAAGTTGCAGTAGAGCAG-GTCG-AAGTTACAAGTCTTATCTCCCTGAAGTTG
1 TCTTATCTCTCTGAAGTTGTAGTAGAGCAGTGAAGCAAATTACAAGTCTTATCT-CCTGAAGTTA
* * *
10938968 TAGTGGAGCAGACTGAAGATAGTAAATCTTATTTCCCTGAAGTTACAGTAGAACAAATTGAAGCT
65 CAGTGGAGCAGACTGAAGATAG-AAATCTTATTTCCCTGAAGTTATAGTGGAACAAATTGAAGC-
* ** *
10939033 AAATTACAGATCTTATCTCTCTGAAGTTGCAATAGAGTAG-GTCGAAGTTACAAGTCTTATCTCC
128 AAATTACAGATCTTATCTCTCTGAAGTTGCAGT-GAACAGTGTC-AAATTACAAGTCTTATCTCC
*
10939097 CTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTGAAGTTGCAGTGGAACAA
191 CTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTGAAGTTGCAGTGGAACAG
10939162 ATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTC
256 ATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTC
* * * *
10939227 TTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTA-TAAGTCTTATCTCCCTGAAGTTGCAG
321 TTATCTCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAG
* * * *
10939291 TGGAGTAGACTGAAG-ATAGTA-A-A
386 TGGAATAGATTGAAGCAAATTACAGA
* * * *
10939314 TCTTAT-TTTCCTGAAGTTGTAGTGGAACAGATTGAAGCTAAATTAC-AGATCTTATCTCTCTAA
1 TCTTATCTCT-CTGAAGTTGTAGTAGAGCAG--TGAAGC-AAATTACAAG-TCTTATCTC-CTGA
* * * * * ** *
10939377 AGTTACAGTAGAGCAG-GTCGAAGTTA-AAAGTCTTATCTCCTTGAAGTTATAGTGGAGTAAACT
60 AGTTACAGTGGAGCAGACT-GAAGATAGAAA-TCTTATTTCCCTGAAGTTATAGTGGAACAAATT
* * *
10939440 GAAG-ATAGTA-A-ATCTTAT-TTTCCTGAAGTTGCAGTGGAACAGATTGATTCTAAATTAC-AG
123 GAAGCAAATTACAGATCTTATCTCT-CTGAAGTTGCAGT-GAACAG--TG--TC-AAATTACAAG
*
10939500 ATCTTATCTCTCTGAAGTTGCAGT
181 -TCTTATCTCCCTGAAGTTGCAGT
10939524 AGAGCAGGTT
Statistics
Matches: 902, Mismatches: 102, Indels: 58
0.85 0.10 0.05
Matches are distributed among these distances:
408 4 0.00
409 47 0.05
410 2 0.00
411 8 0.01
412 6 0.01
413 76 0.08
414 750 0.83
415 9 0.01
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (411 bp):
TCTTATCTCTCTGAAGTTGTAGTAGAGCAGTGAAGCAAATTACAAGTCTTATCTCCTGAAGTTAC
AGTGGAGCAGACTGAAGATAGAAATCTTATTTCCCTGAAGTTATAGTGGAACAAATTGAAGCAAA
TTACAGATCTTATCTCTCTGAAGTTGCAGTGAACAGTGTCAAATTACAAGTCTTATCTCCCTGAA
GTTGCAGTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTGAAGTTGCAGTGGAACAGATTGA
AGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTACAAGTCTTATC
TCCCTGAAGTTGCAGTAGAGCAGGTCGAAGATAGTAAATCTTATTTCCCTGAAGTTGCAGTGGAA
TAGATTGAAGCAAATTACAGA
Found at i:10939555 original size:138 final size:138
Alignment explanation
Indices: 10939225--10939557 Score: 549
Period size: 138 Copynumber: 2.4 Consensus size: 138
10939215 AAGTTACAAG
* * *
10939225 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTATAAGTCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTAAAAGTCTTATCTCCTTGAAGTTACA
* *
10939290 GTGGAGTAGACTGAAGATAGTAAATCTTATTTTCCTGAAGTTGTAGTGGAACAGATTGAAGCTAA
66 GTGGAGTAAACTGAAGATAGTAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
10939355 ATTACAGA
131 ATTACAGA
* * *
10939363 TCTTATCTCTCTAAAGTTACAGTAGAGCAGGTCGAAGTTAAAAGTCTTATCTCCTTGAAGTTATA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTAAAAGTCTTATCTCCTTGAAGTTACA
**
10939428 GTGGAGTAAACTGAAGATAGTAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGATTCTAA
66 GTGGAGTAAACTGAAGATAGTAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
10939493 ATTACAGA
131 ATTACAGA
** *
10939501 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTAAAGTTACAAGTCTTATCTCCTTG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTAAAAGTCTTATCTCCTTG
10939558 TGCTTACAAG
Statistics
Matches: 180, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
138 180 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (138 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTTAAAAGTCTTATCTCCTTGAAGTTACA
GTGGAGTAAACTGAAGATAGTAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCTAA
ATTACAGA
Found at i:10939716 original size:88 final size:87
Alignment explanation
Indices: 10939567--10939756 Score: 290
Period size: 88 Copynumber: 2.2 Consensus size: 87
10939557 GTGCTTACAA
* * * * *
10939567 GGAGCAGATCGGAGACATAGCTGATTTGGCTTTCACGTGTTTACTTTGAAGCAGATCCAAGATGA
1 GGAGCAGATCGAAGACATAACTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATGA
*
10939632 TTTGGCATCTCTGTATCAGGCGG
66 TTTGGCATCTCTGTAGC-GGCGG
10939655 GGAGCAGATCGAAGACATAACTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATGA
1 GGAGCAGATCGAAGACATAACTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATGA
* *
10939720 TTTGGCGTCTTTGTAGCGGCGG
66 TTTGGCATCTCTGTAGCGGCGG
*
10939742 AGAGCAGATCGAAGA
1 GGAGCAGATCGAAGA
10939757 TAACAGATTT
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
87 19 0.20
88 74 0.80
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (87 bp):
GGAGCAGATCGAAGACATAACTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATGA
TTTGGCATCTCTGTAGCGGCGG
Found at i:10939772 original size:44 final size:44
Alignment explanation
Indices: 10939718--10940167 Score: 540
Period size: 44 Copynumber: 10.4 Consensus size: 44
10939708 AATCCAAGAT
*
10939718 GATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
10939762 GATTTGGCGTCTCTGTAGCGGCAGAAAGTAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * * *
10939802 GATTTGGCATCTCTGTAGCAGCAGAGAGTAGATCGAAAATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
10939846 AATTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
10939890 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
10939934 GATTTGGCGTCTCTGTAGCGGCAGAAAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * * *
10939974 GATTTGGCATCTCTGTAGCAGCGGAGAGTAGATCAAAAATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
10940018 GATTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
10940062 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * * * * *
10940106 GATTTGGCGTTTCTGTATTGTCAAGAGAACAGAT-TAGAGATGACA
1 GATTTGGCGTCTCTGTAGCGGC-GGAGAGCAGATCGA-AGATAACA
10940151 GATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTA
10940168 TTTGCAGAGA
Statistics
Matches: 350, Mismatches: 46, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
40 69 0.20
44 251 0.72
45 30 0.09
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:10939896 original size:172 final size:172
Alignment explanation
Indices: 10939718--10940122 Score: 738
Period size: 172 Copynumber: 2.4 Consensus size: 172
10939708 AATCCAAGAT
*
10939718 GATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
10939783 CAGAAAGTAGATCGAAGATGATTTGGCATCTCTGTAGCAGCAGAGAGTAGATCGAAAATAGCAAA
66 CAGAAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCAGCAGAGAGTAGATCAAAAATAGCAAA
10939848 TTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACA
131 TTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACA
10939890 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
10939955 CAGAAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCAGCGGAGAGTAGATCAAAAATAGCAGA
66 CAGAAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCAGCAGAGAGTAGATCAAAAATAGCAAA
10940020 TTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACA
131 TTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACA
* * *
10940062 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACGGATTTGGCGTTTCTGTA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
10940123 TTGTCAAGAG
Statistics
Matches: 225, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
172 225 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (172 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
CAGAAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCAGCAGAGAGTAGATCAAAAATAGCAAA
TTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACA
Found at i:10940099 original size:128 final size:128
Alignment explanation
Indices: 10939704--10940101 Score: 543
Period size: 128 Copynumber: 3.1 Consensus size: 128
10939694 TTTACGTTGA
* * *
10939704 AGCAAATCCAAGATGATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
1 AGCAAATCGAAGATGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGG
* * * * *
10939769 CGTCTCTGTAGCGGCAGAAAGTAGATCGAAGAT----GATTTGGCATCTCTGTAGCAGCAGAG
66 CGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAG
* * * *
10939828 AGTAGATCGAAAATAGCAAATTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACAGAT
1 AGCAAATCGAAGAT-G---ATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGAT
10939893 TTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAG
62 TTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAG
*
10939958 AA
127 AG
* * * * * *
10939960 AGCAGATCGAAGATGATTTGGCATCTCTGTAGCAGCGGAGAGTAGATCAAAAATAGCAGATTTGG
1 AGCAAATCGAAGATGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGG
* *
10940025 CGTCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAG
66 CGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAG
10940088 AGCAAATCGAAGAT
1 AGCAAATCGAAGAT
10940102 AACGGATTTG
Statistics
Matches: 242, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
124 10 0.04
125 1 0.00
128 195 0.81
131 1 0.00
132 35 0.14
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (128 bp):
AGCAAATCGAAGATGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGG
CGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAG
Found at i:10941773 original size:61 final size:59
Alignment explanation
Indices: 10941678--10941809 Score: 237
Period size: 61 Copynumber: 2.2 Consensus size: 59
10941668 AGAAATAAGA
10941678 GCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTTTATGT
1 GCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTG--TTTTTTTATGT
10941739 GCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTATGT
1 GCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTATGT
*
10941798 GCATATTTTTTT
1 GCATATTATTTT
10941810 TTCTTTTCTT
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
59 22 0.31
61 48 0.69
ACGTcount: A:0.20, C:0.07, G:0.14, T:0.59
Consensus pattern (59 bp):
GCATATTATTTTAGCATATAATCTTGTATTGTTTTGATGATTTCGTTGTTTTTTTATGT
Found at i:10948583 original size:22 final size:22
Alignment explanation
Indices: 10948544--10948585 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
10948534 GATTGAGAGT
10948544 GAAAAGAATTGAAGAAAGAAGA
1 GAAAAGAATTGAAGAAAGAAGA
10948566 GAAAATGAATTGAA-AAAGAA
1 GAAAA-GAATTGAAGAAAGAA
10948586 ACAGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (22 bp):
GAAAAGAATTGAAGAAAGAAGA
Found at i:10948591 original size:23 final size:22
Alignment explanation
Indices: 10948544--10948593 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
10948534 GATTGAGAGT
*
10948544 GAAAAGAATTGAAGAAAGAAGA
1 GAAAAGAATTGAAGAAAGAACA
10948566 GAAAATGAATTGAA-AAAGAAACA
1 GAAAA-GAATTGAAGAAAG-AACA
10948589 GAAAA
1 GAAAA
10948594 AACGTGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.66, C:0.02, G:0.22, T:0.10
Consensus pattern (22 bp):
GAAAAGAATTGAAGAAAGAACA
Found at i:10956253 original size:32 final size:31
Alignment explanation
Indices: 10956217--10956288 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
10956207 ATATATATAT
*
10956217 ATAAATTTAGTGCTGTACTCTTGAGAAAGAAG
1 ATAAATTTA-TGCTGTACTCCTGAGAAAGAAG
*
10956249 ATAAATTTTATGTTGTACTCCTGAGAAAGAAG
1 ATAAA-TTTATGCTGTACTCCTGAGAAAGAAG
10956281 -TCAAATTT
1 AT-AAATTT
10956289 GTTCGTCACT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 4 0.11
32 28 0.78
33 4 0.11
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.35
Consensus pattern (31 bp):
ATAAATTTATGCTGTACTCCTGAGAAAGAAG
Found at i:10957471 original size:17 final size:18
Alignment explanation
Indices: 10957438--10957472 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10957428 TTGAATTCTA
10957438 TTTGAAAAGAAACATCAT
1 TTTGAAAAGAAACATCAT
*
10957456 TTTGAATAGAAA-ATCAT
1 TTTGAAAAGAAACATCAT
10957473 GAAGTTGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (18 bp):
TTTGAAAAGAAACATCAT
Found at i:10973173 original size:32 final size:31
Alignment explanation
Indices: 10973137--10973208 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
10973127 ATATATATAT
*
10973137 ATAAATTTAGTGCTGTACTCTTGAGAAAGAAG
1 ATAAATTTA-TGCTGTACTCCTGAGAAAGAAG
*
10973169 ATAAATTTTATGTTGTACTCCTGAGAAAGAAG
1 ATAAA-TTTATGCTGTACTCCTGAGAAAGAAG
10973201 -TCAAATTT
1 AT-AAATTT
10973209 GTTCGTCACT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 4 0.11
32 28 0.78
33 4 0.11
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.35
Consensus pattern (31 bp):
ATAAATTTATGCTGTACTCCTGAGAAAGAAG
Found at i:10974394 original size:17 final size:18
Alignment explanation
Indices: 10974361--10974395 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10974351 TTGAATTCTA
10974361 TTTGAAAAGAAACATCAT
1 TTTGAAAAGAAACATCAT
*
10974379 TTTGAATAGAAA-ATCAT
1 TTTGAAAAGAAACATCAT
10974396 GAAGTTGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (18 bp):
TTTGAAAAGAAACATCAT
Found at i:10991823 original size:100 final size:100
Alignment explanation
Indices: 10991643--10992362 Score: 943
Period size: 100 Copynumber: 7.2 Consensus size: 100
10991633 CTGACAGCGG
* * *
10991643 ATCTTACTTCCCTAACATTGCAATTAAAAAGATTGAAACTACAACAGCGGATCTTACTTTC-CAG
1 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTA-
** * * *
10991707 GCAATGCAGAGGAATAGATTGAAG-CTACAACAACGA
65 GCGTTGCAGTGGAACAGATTGAAGTC-ACAACGACGA
*
10991743 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAATAGCGGATCTTACTTTCTTAG
1 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAG
* * *
10991808 CGTTGCAGTGAAATAGATTGAAGTCACAATGACGA
66 CGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
*
10991843 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAATAGCGGATCTTACTTTCTTAG
1 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAG
* *
10991908 CATTGCAGTGGAACAGATTGAAGTCACAACGATGA
66 CGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * *
10991943 ATCTTACTTCCCTGACATTGCAATTAAAAATATTGAAGCTACAATAGCGGATATTACTTTCTTAG
1 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAG
10992008 CGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
66 CGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
10992043 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAG
1 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAG
* **
10992108 CGTTGCAGTGGAACAGGTCAAAGTCACAACGACGA
66 CGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * * * **
10992143 ATCTCACTTCTCC-GGCATTGCAATGT-AAAAGATTGAAGCCACAACGGCGAATCTTA-TTTCCC
1 ATCTTACTTC-CCTGACATTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTT
** *
10992205 AGGCGTTGCAGTGGAACAGATCAAATTCACAACGACGA
64 A-GCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * * * **
10992243 ATCTTGCTTCCCCGACATTGCAATGT-AAAAGATTGAAGCCACAACGGCGAATCTTA-TTTCCCA
1 ATCTTACTTCCCTGACATTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTA
**
10992306 G-GTGATGCAGCAGAACAGATTGAAGTCACAACGACGA
65 GCGT--TGCAGTGGAACAGATTGAAGTCACAACGACGA
*
10992343 ATCTTGCTTCCCTGACATTG
1 ATCTTACTTCCCTGACATTG
10992363 TTAAAGATGG
Statistics
Matches: 569, Mismatches: 43, Indels: 16
0.91 0.07 0.03
Matches are distributed among these distances:
98 2 0.00
99 8 0.01
100 554 0.97
101 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (100 bp):
ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAG
CGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
Found at i:10992114 original size:50 final size:50
Alignment explanation
Indices: 10991636--10992101 Score: 398
Period size: 50 Copynumber: 9.3 Consensus size: 50
10991626 TCCTGTACTG
* *
10991636 ACAGCGGATCTTACTTCCCTAACATTGCAATTAAAAAGATTGAAACTACA
1 ACAGCGGATCTTACTTCCCTAGCATTGCAATTAAAAAGATTGAAGCTACA
* * ** *
10991686 ACAGCGGATCTTACTTTCC-AGGCAATGCAGA-GGAATAGATTGAAGCTACA
1 ACAGCGGATCTTACTTCCCTA-GCATTGCA-ATTAAAAAGATTGAAGCTACA
* *
10991736 ACAACGAATCTTACTTCCCT-GACATTGCAATTAAAAAGATTGAAGCTACA
1 ACAGCGGATCTTACTTCCCTAG-CATTGCAATTAAAAAGATTGAAGCTACA
* * * * * * *
10991786 ATAGCGGATCTTACTTTCTTAGCGTTGCAGTGAAATAGATTGAAG-TCACA
1 ACAGCGGATCTTACTTCCCTAGCATTGCAATTAAAAAGATTGAAGCT-ACA
* *
10991836 A-TGACGAATCTTACTTCCCT-GACATTGCAATTAAAAAGATTGAAGCTACA
1 ACAG-CGGATCTTACTTCCCTAG-CATTGCAATTAAAAAGATTGAAGCTACA
* * * * ** *
10991886 ATAGCGGATCTTACTTTCTTAGCATTGCAGTGGAACAGATTGAAG-TCACA
1 ACAGCGGATCTTACTTCCCTAGCATTGCAATTAAAAAGATTGAAGCT-ACA
* * *
10991936 AC-GATGAATCTTACTTCCCT-GACATTGCAATTAAAAATATTGAAGCTACA
1 ACAG-CGGATCTTACTTCCCTAG-CATTGCAATTAAAAAGATTGAAGCTACA
* * * * * * ** *
10991986 ATAGCGGATATTACTTTCTTAGCGTTGCAGTGGAACAGATTGAAG-TCACA
1 ACAGCGGATCTTACTTCCCTAGCATTGCAATTAAAAAGATTGAAGCT-ACA
*
10992036 AC-GACGAATCTTACTTCCCT-GACATTGCAATTAAAAAGATTGAAGCTACA
1 ACAG-CGGATCTTACTTCCCTAG-CATTGCAATTAAAAAGATTGAAGCTACA
10992086 ACAGCGGATCTTACTT
1 ACAGCGGATCTTACTT
10992102 TCTTAGCGTT
Statistics
Matches: 321, Mismatches: 72, Indels: 46
0.73 0.16 0.10
Matches are distributed among these distances:
49 12 0.04
50 299 0.93
51 10 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (50 bp):
ACAGCGGATCTTACTTCCCTAGCATTGCAATTAAAAAGATTGAAGCTACA
Found at i:10992236 original size:50 final size:50
Alignment explanation
Indices: 10991693--10992354 Score: 335
Period size: 50 Copynumber: 13.2 Consensus size: 50
10991683 ACAACAGCGG
* ** * * *
10991693 ATCTTACTTTCCAGGCAATGCAGAGGAATAGATTGAAG-CTACAACAACGA
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTC-ACAACGACGA
* * * * ** * * *
10991743 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAG-CTACAA-TAGCGG
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTC-ACAACGA-CGA
** * * *
10991793 ATCTTACTTTCTTA-GCGTTGCAGTGAAATAGATTGAAGTCACAATGACGA
1 ATCTTAC-TTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * * ** * * *
10991843 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAG-CTACAA-TAGCGG
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTC-ACAACGA-CGA
** * *
10991893 ATCTTACTTTCTTA-GCATTGCAGTGGAACAGATTGAAGTCACAACGATGA
1 ATCTTAC-TTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * * ** * * * *
10991943 ATCTTACTTCCCTGACATTGCAATTAAAAATATTGAAG-CTACAA-TAGCGG
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTC-ACAACGA-CGA
* **
10991993 ATATTACTTTCTTA-GCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
1 ATCTTAC-TTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * * ** * *
10992043 ATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAG-CTACAAC-AGCGG
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTC-ACAACGA-CGA
** * **
10992093 ATCTTACTTTCTTA-GCGTTGCAGTGGAACAGGTCAAAGTCACAACGACGA
1 ATCTTAC-TTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * * * * *
10992143 ATCTCACTTCTCC-GGCATTGCAATGTAAAAGATTGAAGCCACAACGGCGA
1 ATCTTACTTC-CCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* ** *
10992193 ATCTTATTTCCCAGGCGTTGCAGTGGAACAGATCAAATTCACAACGACGA
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * * * * * * *
10992243 ATCTTGCTTCCCCGACATTGCAATGTAAAAGATTGAAGCCACAACGGCGA
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
* * * **
10992293 ATCTTATTTCCCAGGTGATGCAGCAGAACAGATTGAAGTCACAACGACGA
1 ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
*
10992343 ATCTTGCTTCCC
1 ATCTTACTTCCC
10992355 TGACATTGTT
Statistics
Matches: 444, Mismatches: 143, Indels: 50
0.70 0.22 0.08
Matches are distributed among these distances:
49 21 0.05
50 403 0.91
51 20 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (50 bp):
ATCTTACTTCCCAGGCGTTGCAGTGGAACAGATTGAAGTCACAACGACGA
Found at i:10996830 original size:32 final size:31
Alignment explanation
Indices: 10996794--10996865 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
10996784 ATATATATAT
*
10996794 ATAAATTTAGTGCTGTACTCTTGAGAAAGAAG
1 ATAAATTTA-TGCTGTACTCCTGAGAAAGAAG
*
10996826 ATAAATTTTATGTTGTACTCCTGAGAAAGAAG
1 ATAAA-TTTATGCTGTACTCCTGAGAAAGAAG
10996858 -TCAAATTT
1 AT-AAATTT
10996866 GTTCGTCACT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 4 0.11
32 28 0.78
33 4 0.11
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.35
Consensus pattern (31 bp):
ATAAATTTATGCTGTACTCCTGAGAAAGAAG
Done.