Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 45 of 349
Found at i:12742274 original size:26 final size:26
Alignment explanation
Indices: 12742245--12742310 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
12742235 AGTTTGGCAA
12742245 TACTTTTGAAAAGTG-TTTTTGAAAAG
1 TACTTTTGAAAAGTGCTTTTT-AAAAG
* *
12742271 TAC-TGTGAAAAAGTGCTTTTTAGAAG
1 TACTTTTG-AAAAGTGCTTTTTAAAAG
*
12742297 TGCTTTTGAAAAGT
1 TACTTTTGAAAAGT
12742311 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 3 0.09
26 22 0.67
27 8 0.24
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.39
Consensus pattern (26 bp):
TACTTTTGAAAAGTGCTTTTTAAAAG
Found at i:12746222 original size:14 final size:14
Alignment explanation
Indices: 12746203--12746244 Score: 84
Period size: 14 Copynumber: 3.0 Consensus size: 14
12746193 CATTATCTCA
12746203 ATCTACATTATCAT
1 ATCTACATTATCAT
12746217 ATCTACATTATCAT
1 ATCTACATTATCAT
12746231 ATCTACATTATCAT
1 ATCTACATTATCAT
12746245 TGACTTTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (14 bp):
ATCTACATTATCAT
Found at i:12749962 original size:19 final size:18
Alignment explanation
Indices: 12749938--12749978 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
12749928 AAGAACAGCT
12749938 ATTTTGTTAATTAGTTAAC
1 ATTTTGTTAATTAGTT-AC
*
12749957 ATTTTGTTACTTAGTTAC
1 ATTTTGTTAATTAGTTAC
12749975 ATTT
1 ATTT
12749979 AACTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.56
Consensus pattern (18 bp):
ATTTTGTTAATTAGTTAC
Found at i:12752445 original size:20 final size:20
Alignment explanation
Indices: 12752408--12752451 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
12752398 ATTTCTCTTA
*
12752408 TGATTCATATATCGAAAAGT
1 TGATTCATATATCGAAAAAT
*
12752428 TGATTCCATATAT-TAAAAAT
1 TGATT-CATATATCGAAAAAT
12752448 TGAT
1 TGAT
12752452 GAATGTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (20 bp):
TGATTCATATATCGAAAAAT
Found at i:12754461 original size:20 final size:20
Alignment explanation
Indices: 12754419--12754468 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
12754409 AAACATGTCT
* *
12754419 CAAATGTGTTTTAACTTATC
1 CAAATGTGTTTCAACATATC
12754439 CAAATGTGTTTCAAGCATA-C
1 CAAATGTGTTTCAA-CATATC
12754459 C-AATGTGTTT
1 CAAATGTGTTT
12754469 TTAAGTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 9 0.33
20 15 0.56
21 3 0.11
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (20 bp):
CAAATGTGTTTCAACATATC
Found at i:12756324 original size:39 final size:39
Alignment explanation
Indices: 12756258--12756425 Score: 121
Period size: 39 Copynumber: 4.3 Consensus size: 39
12756248 AGCGGCGTTC
** * *
12756258 AAACGCCGCTAAAGAAAGAGCATTAGCGGTGCTTTTTAA
1 AAACGCCGCTAAAGATCGAGCACTAGCGGCGCTTTTTAA
*
12756297 AAACGCCGCTAAAGATCGAGTACTAGCGGCG----TT-A
1 AAACGCCGCTAAAGATCGAGCACTAGCGGCGCTTTTTAA
* * * ** * *
12756331 AAACGCCACAAAAAAATTTAACAGGCTTTAGCGGCACTTTTTAA
1 AAACGCCGC-TAAAGATCGAGCA--C--TAGCGGCGCTTTTTAA
* *
12756375 AAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAA
1 AAACGCCGCTAAAGATCGAGCACTAGCGGCGC-TTTTTAA
12756415 AAACGCCGCTA
1 AAACGCCGCTA
12756426 TATGTACACC
Statistics
Matches: 96, Mismatches: 22, Indels: 21
0.69 0.16 0.15
Matches are distributed among these distances:
34 9 0.09
35 9 0.09
37 1 0.01
39 41 0.43
40 18 0.19
43 9 0.09
44 9 0.09
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (39 bp):
AAACGCCGCTAAAGATCGAGCACTAGCGGCGCTTTTTAA
Found at i:12756480 original size:40 final size:38
Alignment explanation
Indices: 12756357--12756503 Score: 127
Period size: 40 Copynumber: 3.7 Consensus size: 38
12756347 TTTAACAGGC
* * *
12756357 TTTAGCGGCACTTTTTAAAAACGCCGCTAAAGATCGAGTA
1 TTTAGCGGCGCTTTTTAAAAACGCCGCTAATG-TAGA-TA
* **
12756397 -TTAGCGGCGCTTTTTTAAAAACGCCGCTATATGTACACC
1 TTTAGCGGCGC-TTTTTAAAAACGCCGCTA-ATGTAGATA
* *
12756436 TTTAGCAGCGCTTTTTAGAAAACGCCGCTAATGCTTGATA
1 TTTAGCGGCGCTTTTTA-AAAACGCCGCTAATG-TAGATA
*
12756476 TTTAGTGGCG-TTTTTCAAAAAACGCCGC
1 TTTAGCGGCGCTTTTT--AAAAACGCCGC
12756504 AAAAATTTTT
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
39 23 0.26
40 61 0.70
41 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (38 bp):
TTTAGCGGCGCTTTTTAAAAACGCCGCTAATGTAGATA
Found at i:12756503 original size:80 final size:79
Alignment explanation
Indices: 12756356--12756503 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 79
12756346 ATTTAACAGG
* *
12756356 CTTTAGCGGCACTTTTTAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTTTAAAAACGC
1 CTTTAGCAGCACTTTTTAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTTAAAAAACGC
12756421 CGCTATATGTACAC
66 CGCTATATGTACAC
* * * * *
12756435 CTTTAGCAGCGCTTTTTAGAAAACGCCGCTAATGCTTGA-TATTTAGTGGCG-TTTTTCAAAAAA
1 CTTTAGCAGCACTTTTTA-AAAACGCCGCTAAAGATCGAGTA-TTAGCGGCGCTTTTT-AAAAAA
12756498 CGCCGC
63 CGCCGC
12756504 AAAAATTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 23 0.39
80 36 0.61
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (79 bp):
CTTTAGCAGCACTTTTTAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTTAAAAAACGC
CGCTATATGTACAC
Found at i:12756637 original size:41 final size:38
Alignment explanation
Indices: 12756552--12756639 Score: 97
Period size: 41 Copynumber: 2.2 Consensus size: 38
12756542 TTTTAGTGGC
** *
12756552 TTTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATTGAG
1 TTTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATACAA
12756590 TATTAGCGGCGCTTTTTTAAGAAACGCCGCTATAAG-TACACA
1 T-TTAGCGGCGC-TTTTTAA-AAACGCCGCTA-AAGATACA-A
12756632 TTTAGCGG
1 TTTAGCGG
12756640 TGTTTACGCC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 1 0.02
39 10 0.24
40 7 0.17
41 20 0.48
42 4 0.10
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (38 bp):
TTTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATACAA
Found at i:12756903 original size:15 final size:15
Alignment explanation
Indices: 12756866--12756899 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
12756856 CAATTTTAAG
*
12756866 GTTTATGGATTATGA
1 GTTTAGGGATTATGA
12756881 GTTTAGGGATTATG-
1 GTTTAGGGATTATGA
12756895 GTTTA
1 GTTTA
12756900 AGGGTGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (15 bp):
GTTTAGGGATTATGA
Found at i:12758019 original size:27 final size:27
Alignment explanation
Indices: 12757958--12758029 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
12757948 AAATCCCAAC
12757958 CCATC-TCTGCATCGCCG--GACCCGA
1 CCATCTTCTGCATCGCCGTCGACCCGA
* **
12757982 CCATCTGCTGCATCGCCGTCGACTTGA
1 CCATCTTCTGCATCGCCGTCGACCCGA
*
12758009 CCATCTTCTGCGTCGCCGTCG
1 CCATCTTCTGCATCGCCGTCG
12758030 CACTGCTCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
24 5 0.12
25 11 0.28
27 24 0.60
ACGTcount: A:0.12, C:0.42, G:0.22, T:0.24
Consensus pattern (27 bp):
CCATCTTCTGCATCGCCGTCGACCCGA
Found at i:12760605 original size:15 final size:16
Alignment explanation
Indices: 12760585--12760615 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
12760575 GTTTTTGTCT
12760585 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
12760600 TATATATGATCTAAAA
1 TATATATGATCTAAAA
12760616 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:12761654 original size:43 final size:43
Alignment explanation
Indices: 12761574--12761771 Score: 229
Period size: 43 Copynumber: 4.6 Consensus size: 43
12761564 ATAATTTTTT
* * * * *
12761574 TAAAGGTTATGAT-TTTAGCGCCGTCTGTGGGAAAAGCGTCGT
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * ** * *
12761616 TACAGGTCATGATTTTTAGCGGCATTTGT-AAAAGAAGCGTCGT
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAA-AAGCGCCGC
* *
12761659 TAAAGGTTATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*
12761702 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*
12761745 TAAAGGTCATGATCTTTAGCGGTGTTT
1 TAAAGGTCATGATCTTTAGCGGCGTTT
12761772 TTTTAAATAA
Statistics
Matches: 134, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
42 13 0.10
43 119 0.89
44 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (43 bp):
TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:12762541 original size:92 final size:89
Alignment explanation
Indices: 12762414--12762689 Score: 299
Period size: 92 Copynumber: 3.0 Consensus size: 89
12762404 CTTAAGGGTG
* * *
12762414 TAAAAAAT-CCTCAAA-CTTTTAAAAAAAAAGTAATTAAGTCCCTACTTTTTTTTTGCTCTCAAT
1 TAAAAAATGCCTCAAATTTTTTAAAAAAAAAGCAATTAA-TCCCTACTTTTTTTTTGCACTCAAT
* *
12762477 TGGGTACTTGAACTTTCAAAATGTA
65 TGAGTACTTGAACTTTCAAAATGCA
* * * *
12762502 TAAAAAATGCTCTCAAATTTTTTCAAAAAAAAAACAATTAATTTCCTGCTTTTGTTTTGCACTCA
1 TAAAAAATGC-CTCAAATTTTTT-AAAAAAAAAGCAATTAA-TCCCTACTTTTTTTTTGCACTCA
* *
12762567 ATTGAGTATTTGAACTTTCAAAATACA
63 ATTGAGTACTTGAACTTTCAAAATGCA
*
12762594 TAAAAAA-GACCTTCAAATTTTTT-AAAAAAAAGCAATTAACCCCTTACTCTTATTTTTTGTTGC
1 TAAAAAATG-CC-TCAAATTTTTTAAAAAAAAAGCAATTAATCCC-TA--C-T-TTTTTT-TTGC
*
12762657 ACTCAATTGAGTACTTGAACTTCCAAAATGCA
58 ACTCAATTGAGTACTTGAACTTTCAAAATGCA
12762689 T
1 T
12762690 TAGGAAGGCC
Statistics
Matches: 156, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
88 8 0.05
89 3 0.02
90 22 0.14
91 6 0.04
92 77 0.49
93 1 0.01
94 5 0.03
95 34 0.22
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (89 bp):
TAAAAAATGCCTCAAATTTTTTAAAAAAAAAGCAATTAATCCCTACTTTTTTTTTGCACTCAATT
GAGTACTTGAACTTTCAAAATGCA
Found at i:12762885 original size:21 final size:21
Alignment explanation
Indices: 12762846--12762891 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
12762836 TTTAAAAAAT
*
12762846 AATAAAAATTAAAATTTATTAAA
1 AATAAAAA-TAAAAATTA-TAAA
12762869 AATAAAAA-AAAAATTATAAA
1 AATAAAAATAAAAATTATAAA
12762889 AAT
1 AAT
12762892 CATAAAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 7 0.32
23 8 0.36
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AATAAAAATAAAAATTATAAA
Found at i:12762889 original size:10 final size:10
Alignment explanation
Indices: 12762876--12762940 Score: 53
Period size: 10 Copynumber: 6.7 Consensus size: 10
12762866 AAAAATAAAA
12762876 AAAAAATTAT
1 AAAAAATTAT
*
12762886 -AAAAATCAT
1 AAAAAATTAT
*
12762895 AAAAGATTAT
1 AAAAAATTAT
* *
12762905 AAAAAAATGT
1 AAAAAATTAT
**
12762915 AAAATTTTAT
1 AAAAAATTAT
*
12762925 -AAAAATCAT
1 AAAAAATTAT
12762934 AAAAAAT
1 AAAAAAT
12762941 GTAAAATATA
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
9 14 0.35
10 26 0.65
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:12762898 original size:18 final size:18
Alignment explanation
Indices: 12762877--12763024 Score: 70
Period size: 18 Copynumber: 7.8 Consensus size: 18
12762867 AAAATAAAAA
12762877 AAAAATTATAAAAATCAT
1 AAAAATTATAAAAATCAT
*
12762895 AAAAGATTATAAAAAAAT-GT
1 AAAA-ATTAT--AAAAATCAT
*
12762915 AAAATTTTATAAAAATCAT
1 AAAA-ATTATAAAAATCAT
* *
12762934 AAAAAATGTAAAATAT-AT
1 AAAAATTATAAAA-ATCAT
* *
12762952 AGAAA-TATAGAAAATACTT
1 AAAAATTATA-AAAAT-CAT
* *
12762971 ATAAAATTTTATAAAGTCAT
1 A-AAAATTATA-AAAATCAT
* *
12762991 AAAAAAATATAAAAAT-GT
1 -AAAAATTATAAAAATCAT
*
12763009 AAAGAAATATAAAAAT
1 AAA-AATTATAAAAAT
12763025 TATCGTAACA
Statistics
Matches: 99, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
17 8 0.08
18 38 0.38
19 18 0.18
20 21 0.21
21 14 0.14
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (18 bp):
AAAAATTATAAAAATCAT
Found at i:12762909 original size:39 final size:39
Alignment explanation
Indices: 12762839--12762938 Score: 100
Period size: 39 Copynumber: 2.6 Consensus size: 39
12762829 TTAAATTTTT
* *
12762839 AAAAAATAATAAAAAT--TAAAATTTATTAAAAATAA-AA
1 AAAAAATTATAAAAATCATAAAAATTATTAAAAA-AATAA
**
12762876 AAAAAATTATAAAAATCATAAAAGATTA-TAAAAAAATGT
1 AAAAAATTATAAAAATCATAAAA-ATTATTAAAAAAATAA
**
12762915 AAAATTTTATAAAAATCATAAAAA
1 AAAAAATTATAAAAATCATAAAAA
12762939 ATGTAAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
37 15 0.28
38 3 0.06
39 32 0.60
40 3 0.06
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (39 bp):
AAAAAATTATAAAAATCATAAAAATTATTAAAAAAATAA
Found at i:12762910 original size:20 final size:19
Alignment explanation
Indices: 12762838--12763024 Score: 79
Period size: 20 Copynumber: 9.9 Consensus size: 19
12762828 ATTAAATTTT
*
12762838 TAAAAAATAATAAAAAT--
1 TAAAAAATTATAAAAATCA
* *
12762855 T-AAAATTTATTAAAAATAAA
1 TAAAAAATTA-TAAAAAT-CA
*
12762875 AAAAAAATTATAAAAATCA
1 TAAAAAATTATAAAAATCA
* *
12762894 TAAAAGATTATAAAAAAAT-G
1 TAAAAAATTAT--AAAAATCA
**
12762914 TAAAATTTTATAAAAATCA
1 TAAAAAATTATAAAAATCA
*
12762933 TAAAAAA-TGT-AAAAT-A
1 TAAAAAATTATAAAAATCA
* *
12762949 TATAGAAA-TATAGAAAATACT
1 TA-AAAAATTATA-AAAAT-CA
* * *
12762970 TATAAAATTTTATAAAGTCA
1 TAAAAAATTATA-AAAATCA
* *
12762990 TAAAAAAATATAAAAAT-G
1 TAAAAAATTATAAAAATCA
12763008 TAAAGAAA-TATAAAAAT
1 TAAA-AAATTATAAAAAT
12763025 TATCGTAACA
Statistics
Matches: 127, Mismatches: 28, Indels: 29
0.69 0.15 0.16
Matches are distributed among these distances:
16 9 0.07
17 19 0.15
18 21 0.17
19 27 0.21
20 29 0.23
21 22 0.17
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.28
Consensus pattern (19 bp):
TAAAAAATTATAAAAATCA
Found at i:12762918 original size:28 final size:26
Alignment explanation
Indices: 12762887--12762947 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
12762877 AAAAATTATA
*
12762887 AAAATCATAAAAGATTATAAAAAAATGT
1 AAAATCATAAAA-ATCAT-AAAAAATGT
*
12762915 AAAATTTTATAAAAATCATAAAAAATGT
1 AAAA--TCATAAAAATCATAAAAAATGT
12762943 AAAAT
1 AAAAT
12762948 ATATAGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
26 1 0.03
28 17 0.59
29 4 0.14
30 7 0.24
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (26 bp):
AAAATCATAAAAATCATAAAAAATGT
Found at i:12762965 original size:28 final size:27
Alignment explanation
Indices: 12762902--12763023 Score: 77
Period size: 28 Copynumber: 4.3 Consensus size: 27
12762892 CATAAAAGAT
*
12762902 TATAAAAAAATGTAAAATTTTATAAAA
1 TATAAAAAAATGTAAAATTATATAAAA
12762929 -ATCATAAAAAATGTAAAA-TATATAGAAA
1 TAT-A-AAAAAATGTAAAATTATATA-AAA
* * * *
12762957 TATAGAAAATACTTATAAAATTTTATAAAG
1 TATA-AAAA-A-ATGTAAAATTATATAAAA
* * * *
12762987 TCATAAAAAAATATAAAAATGTAAAGAAA
1 T-ATAAAAAAATGTAAAATTATATA-AAA
12763016 TATAAAAA
1 TATAAAAA
12763024 TTATCGTAAC
Statistics
Matches: 75, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
26 2 0.03
27 6 0.08
28 39 0.52
29 7 0.09
30 13 0.17
31 8 0.11
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (27 bp):
TATAAAAAAATGTAAAATTATATAAAA
Found at i:12762980 original size:58 final size:58
Alignment explanation
Indices: 12762875--12763024 Score: 157
Period size: 58 Copynumber: 2.6 Consensus size: 58
12762865 TAAAAATAAA
* * *
12762875 AAAAAAATTATAAAAATCATAAA-AGATTATAAAAA-A-ATGTAAAATTTTATAAAAATCAT
1 AAAAAAA-TATAAAAAT-ATAAAGA-AATATAAAAATACTTATAAAATTTTAT-AAAATCAT
* * *
12762934 -AAAAAATGT-AAAATATATAGAAATATAGAAAATACTTATAAAATTTTATAAAGTCAT
1 AAAAAAATATAAAAATATAAAGAAATATA-AAAATACTTATAAAATTTTATAAAATCAT
*
12762991 AAAAAAATATAAAAATGTAAAGAAATATAAAAAT
1 AAAAAAATATAAAAATATAAAGAAATATAAAAAT
12763025 TATCGTAACA
Statistics
Matches: 76, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
55 9 0.12
56 10 0.13
57 10 0.13
58 31 0.41
59 16 0.21
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (58 bp):
AAAAAAATATAAAAATATAAAGAAATATAAAAATACTTATAAAATTTTATAAAATCAT
Found at i:12763242 original size:20 final size:20
Alignment explanation
Indices: 12763217--12763301 Score: 59
Period size: 19 Copynumber: 4.3 Consensus size: 20
12763207 ATGCATTTTC
12763217 TAATTTTAATAAAATTTTAA
1 TAATTTTAATAAAATTTTAA
* * * *
12763237 TAATTTT-TTATATTTTTTA
1 TAATTTTAATAAAATTTTAA
* * * **
12763256 CAATTTTTAT-AATTTGTTTC
1 TAATTTTAATAAAATT-TTAA
12763276 TAATTTTAATAAAATTTTAA
1 TAATTTTAATAAAATTTTAA
12763296 T-ATTTT
1 TAATTTT
12763302 TTATATTTTT
Statistics
Matches: 49, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
19 23 0.47
20 22 0.45
21 4 0.08
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (20 bp):
TAATTTTAATAAAATTTTAA
Found at i:12763245 original size:11 final size:10
Alignment explanation
Indices: 12763231--12763344 Score: 69
Period size: 10 Copynumber: 11.7 Consensus size: 10
12763221 TTTAATAAAA
*
12763231 TTTTAATAAT
1 TTTTTATAAT
12763241 TTTTTAT-AT
1 TTTTTATAAT
*
12763250 TTTTTACAA-
1 TTTTTATAAT
12763259 TTTTTATAAT
1 TTTTTATAAT
*
12763269 TTGTTTCTAA-
1 TT-TTTATAAT
* *
12763279 TTTTAATAAA
1 TTTTTATAAT
*
12763289 ATTTTA-ATAT
1 TTTTTATA-AT
12763299 TTTTTAT-AT
1 TTTTTATAAT
12763308 TTTTTATTAA-
1 TTTTTA-TAAT
**
12763318 AATTTATAAT
1 TTTTTATAAT
*
12763328 TTTTTATTAT
1 TTTTTATAAT
*
12763338 CTTTTAT
1 TTTTTAT
12763345 TGGTTTTTAT
Statistics
Matches: 79, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
9 33 0.42
10 39 0.49
11 7 0.09
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.65
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:12763307 original size:9 final size:9
Alignment explanation
Indices: 12763239--12763314 Score: 53
Period size: 9 Copynumber: 8.0 Consensus size: 9
12763229 AATTTTAATA
12763239 ATTTTTTAT
1 ATTTTTTAT
*
12763248 ATTTTTTAC
1 ATTTTTTAT
*
12763257 AATTTTTAT
1 ATTTTTTAT
*
12763266 AATTTGTTTCT
1 -ATTT-TTTAT
* *
12763277 AATTTTAATAA
1 -ATTTT-TTAT
* *
12763288 AATTTTAAT
1 ATTTTTTAT
12763297 ATTTTTTAT
1 ATTTTTTAT
12763306 ATTTTTTAT
1 ATTTTTTAT
12763315 TAAAATTTAT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
9 32 0.64
10 8 0.16
11 10 0.20
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:12763324 original size:59 final size:59
Alignment explanation
Indices: 12763213--12763329 Score: 191
Period size: 59 Copynumber: 2.0 Consensus size: 59
12763203 TTTGATGCAT
**
12763213 TTTCTAATTTTAATAAAATTTTAATAATTTTTTATATTTTTTACAATTTTTATAATTTG
1 TTTCTAATTTTAATAAAATTTTAATAATTTTTTATATTTTTTACAAAATTTATAATTTG
*
12763272 TTTCTAATTTTAATAAAATTTTAAT-ATTTTTTATATTTTTTATTAAAATTTATAATTT
1 TTTCTAATTTTAATAAAATTTTAATAATTTTTTATATTTTTTA-CAAAATTTATAATTT
12763330 TTTATTATCT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
58 17 0.31
59 37 0.69
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (59 bp):
TTTCTAATTTTAATAAAATTTTAATAATTTTTTATATTTTTTACAAAATTTATAATTTG
Found at i:12763343 original size:20 final size:19
Alignment explanation
Indices: 12763241--12763369 Score: 70
Period size: 20 Copynumber: 6.8 Consensus size: 19
12763231 TTTTAATAAT
**
12763241 TTTTTAT-ATTTTTTACAA
1 TTTTTATAATTTTTTATTA
* *
12763259 TTTTTATAATTTGTTTCTAA
1 TTTTTATAATTT-TTTATTA
* ** *
12763279 TTTTAATAAAATTTTAATA
1 TTTTTATAATTTTTTATTA
12763298 TTTTT-TATATTTTTTATTAA
1 TTTTTATA-ATTTTTTATT-A
**
12763318 AATTTATAATTTTTTATTA
1 TTTTTATAATTTTTTATTA
**
12763337 TCTTTTAT--TGGTTT-TTA
1 T-TTTTATAATTTTTTATTA
12763354 TTTTTATCAATTTTTT
1 TTTTTAT-AATTTTTT
12763370 GCTACATGTT
Statistics
Matches: 82, Mismatches: 20, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
16 6 0.07
17 4 0.05
18 13 0.16
19 24 0.29
20 33 0.40
21 2 0.02
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTATAATTTTTTATTA
Found at i:12763661 original size:17 final size:18
Alignment explanation
Indices: 12763639--12763672 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
12763629 ATATTTATAT
12763639 CCAAACAC-AATATTATC
1 CCAAACACAAATATTATC
12763656 CCAAACACAAATATTAT
1 CCAAACACAAATATTAT
12763673 ACACATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (18 bp):
CCAAACACAAATATTATC
Found at i:12773407 original size:19 final size:20
Alignment explanation
Indices: 12773375--12773417 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
12773365 ACACTGCTAA
* *
12773375 TTTTCTTAACATTATTTCAT
1 TTTTCTTAACATTAATTAAT
*
12773395 TTTTTTTAA-ATTAATTAAT
1 TTTTCTTAACATTAATTAAT
12773414 TTTT
1 TTTT
12773418 AAAATTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTCTTAACATTAATTAAT
Found at i:12774056 original size:43 final size:43
Alignment explanation
Indices: 12773993--12774099 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 43
12773983 GTTTATTTGA
** * * *
12773993 AAAAACGCTTCTAAAGATCATGACCTTTAGCGGCGCTTTTTCC
1 AAAAACGCCGCTAAAAATCATGACCTTTAGCGACCCTTTTTCC
* * * *
12774036 ACAAATGCCGCTAAAAATCATTACCTTTAGCGACCCTTTTTTC
1 AAAAACGCCGCTAAAAATCATGACCTTTAGCGACCCTTTTTCC
* *
12774079 AAAAACGTCGCTAAAAGTCAT
1 AAAAACGCCGCTAAAAATCAT
12774100 AAAATTCAAA
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (43 bp):
AAAAACGCCGCTAAAAATCATGACCTTTAGCGACCCTTTTTCC
Found at i:12774567 original size:64 final size:64
Alignment explanation
Indices: 12774492--12774618 Score: 254
Period size: 64 Copynumber: 2.0 Consensus size: 64
12774482 TGTAAAATAT
12774492 AAGATTTGAATATCCATTCCCATGTGAAATATCAACATTGATTATTTAAATTGATTAACTAAGA
1 AAGATTTGAATATCCATTCCCATGTGAAATATCAACATTGATTATTTAAATTGATTAACTAAGA
12774556 AAGATTTGAATATCCATTCCCATGTGAAATATCAACATTGATTATTTAAATTGATTAACTAAG
1 AAGATTTGAATATCCATTCCCATGTGAAATATCAACATTGATTATTTAAATTGATTAACTAAG
12774619 TCAAAATTGC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (64 bp):
AAGATTTGAATATCCATTCCCATGTGAAATATCAACATTGATTATTTAAATTGATTAACTAAGA
Found at i:12775498 original size:15 final size:15
Alignment explanation
Indices: 12775470--12775503 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
12775460 CTCAGATGAA
*
12775470 CAAAAATGGTACATC
1 CAAAAATGGAACATC
*
12775485 CAAAATTGGAACATC
1 CAAAAATGGAACATC
12775500 CAAA
1 CAAA
12775504 CATCAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.21, G:0.12, T:0.18
Consensus pattern (15 bp):
CAAAAATGGAACATC
Found at i:12781012 original size:42 final size:42
Alignment explanation
Indices: 12780940--12781021 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
12780930 ATATAAACCC
* *
12780940 TAAACCTCTAACCCCTACCCCTAAATCTTAAATC-CTAAACAT
1 TAAACCTATAACCCCTACCCCTAAACCTTAAA-CACTAAACAT
* *
12780982 TAAACCTATAACCCC-ATCCCTTAACCCTTAAACACTAAAC
1 TAAACCTATAACCCCTA-CCCCTAAACCTTAAACACTAAAC
12781022 CTTTAACTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
41 2 0.06
42 32 0.94
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (42 bp):
TAAACCTATAACCCCTACCCCTAAACCTTAAACACTAAACAT
Found at i:12781122 original size:7 final size:7
Alignment explanation
Indices: 12781112--12781194 Score: 53
Period size: 7 Copynumber: 11.7 Consensus size: 7
12781102 ATAAACCATA
12781112 AACCCCT
1 AACCCCT
12781119 AACCCTTCT
1 AACCC--CT
*
12781128 -ACCCTT
1 AACCCCT
*
12781134 AACGCCT
1 AACCCCT
12781141 AACCCCT
1 AACCCCT
*
12781148 ATCCCCTT
1 AACCCC-T
* *
12781156 AACACTT
1 AACCCCT
12781163 AACCCCT
1 AACCCCT
*
12781170 AATCCCT
1 AACCCCT
**
12781177 AACCATT
1 AACCCCT
12781184 AACCCC-
1 AACCCCT
12781190 AACCC
1 AACCC
12781195 TTAAACCATA
Statistics
Matches: 56, Mismatches: 16, Indels: 9
0.69 0.20 0.11
Matches are distributed among these distances:
6 6 0.11
7 40 0.71
8 8 0.14
9 2 0.04
ACGTcount: A:0.29, C:0.48, G:0.01, T:0.22
Consensus pattern (7 bp):
AACCCCT
Found at i:12781154 original size:22 final size:23
Alignment explanation
Indices: 12781129--12781175 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
12781119 AACCCTTCTA
*
12781129 CCCTTAACGCCTAACCCCT-ATC
1 CCCTTAACACCTAACCCCTAATC
*
12781151 CCCTTAACACTTAACCCCTAATC
1 CCCTTAACACCTAACCCCTAATC
12781174 CC
1 CC
12781176 TAACCATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.26, C:0.49, G:0.02, T:0.23
Consensus pattern (23 bp):
CCCTTAACACCTAACCCCTAATC
Found at i:12781176 original size:22 final size:21
Alignment explanation
Indices: 12781129--12781198 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
12781119 AACCCTTCTA
*
12781129 CCCTTAACGCCTAACCCCT-AT
1 CCCTTAAC-CTTAACCCCTAAT
12781150 CCCCTTAACACTTAACCCCTAAT
1 -CCCTTAAC-CTTAACCCCTAAT
12781173 CCC-TAACCATTAACCCC-AA-
1 CCCTTAACC-TTAACCCCTAAT
12781192 CCCTTAA
1 CCCTTAA
12781199 ACCATAATCC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 3 0.07
20 6 0.14
21 12 0.28
22 20 0.47
23 2 0.05
ACGTcount: A:0.30, C:0.46, G:0.01, T:0.23
Consensus pattern (21 bp):
CCCTTAACCTTAACCCCTAAT
Found at i:12781682 original size:132 final size:133
Alignment explanation
Indices: 12781444--12781715 Score: 402
Period size: 132 Copynumber: 2.1 Consensus size: 133
12781434 CATTTTTTTG
** *
12781444 TGGCGTTTTTTAAAAAACGCAGCTAAAGATTGAGCATTAGCGGCATTTCTTAAAAAAGCGCCGCT
1 TGGCGTTTTTTAAAAAACGCAGCTAAAGATCAAGCATTAGCGGCATTTCTCAAAAAAGCGCCGCT
* * * *
12781509 AATACTCGATCTTTAGCGGTGCTTTTTAAAAATGCCGCTAAAGCCACTAAAAGCTCAATACAAAA
66 AATACTCGATCTTTAACGGCGCTTTTTAAAAACGCCGCTAAAGCCACTAAAAGCACAATACAAAA
12781574 CGA
131 CGA
* * *
12781577 TGGCGTTTTTTAAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGTTT-TCCAAAAAGCGCCGCT
1 TGGCGTTTTTTAAAAAACGCAGCTAAAGATCAAGCATTAGCGGCATTTCTCAAAAAAGCGCCGCT
* * * *
12781641 AATACTCGATCTTTAATGGCGTTTTTTAAAAGCGCCGCTAAAGCCACTAAAGGCACAATACAAAA
66 AATACTCGATCTTTAACGGCGCTTTTTAAAAACGCCGCTAAAGCCACTAAAAGCACAATACAAAA
12781706 CGA
131 CGA
*
12781709 CGGCGTT
1 TGGCGTT
12781716 GTGTTAATTT
Statistics
Matches: 124, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
132 80 0.65
133 44 0.35
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (133 bp):
TGGCGTTTTTTAAAAAACGCAGCTAAAGATCAAGCATTAGCGGCATTTCTCAAAAAAGCGCCGCT
AATACTCGATCTTTAACGGCGCTTTTTAAAAACGCCGCTAAAGCCACTAAAAGCACAATACAAAA
CGA
Found at i:12782167 original size:21 final size:20
Alignment explanation
Indices: 12782139--12782186 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
12782129 TAATCACCCC
*
12782139 AATTTTATTTTATTTATTTT
1 AATTTTATATTATTTATTTT
12782159 AATTGTTATATTATTTATTTT
1 AATT-TTATATTATTTATTTT
*
12782180 TATTTTA
1 AATTTTA
12782187 CTAATTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
AATTTTATATTATTTATTTT
Found at i:12782237 original size:15 final size:17
Alignment explanation
Indices: 12782219--12782273 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
12782209 ATTCTTATAC
12782219 TTATAT-TTTTAA-TTT
1 TTATATATTTTAATTTT
12782234 TTATATATTTTAATTTT
1 TTATATATTTTAATTTT
*
12782251 TTATATACTTTTATTATTT
1 TTATATA-TTTTAAT-TTT
12782270 TTAT
1 TTAT
12782274 TTTGCTATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
15 6 0.17
16 6 0.17
17 10 0.29
18 6 0.17
19 7 0.20
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATATATTTTAATTTT
Found at i:12782270 original size:8 final size:9
Alignment explanation
Indices: 12782219--12782270 Score: 51
Period size: 8 Copynumber: 6.2 Consensus size: 9
12782209 ATTCTTATAC
12782219 TTATAT-TT
1 TTATATATT
12782227 TTA-AT-TT
1 TTATATATT
12782234 TTATATATT
1 TTATATATT
*
12782243 TTA-ATTTT
1 TTATATATT
12782251 TTATATACTT
1 TTATATA-TT
12782261 TTAT-TATT
1 TTATATATT
12782269 TT
1 TT
12782271 TATTTTGCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.18
8 16 0.42
9 9 0.24
10 6 0.16
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (9 bp):
TTATATATT
Found at i:12782298 original size:22 final size:22
Alignment explanation
Indices: 12782262--12782334 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 22
12782252 TATATACTTT
12782262 TATTATTTTTATTTTGCTATTTC-
1 TATT-TTTTTATTTT-CTATTTCG
* * *
12782285 TATTTTTTTCTTTTTTCTTTCG
1 TATTTTTTTATTTTCTATTTCG
12782307 TA-TTTTTT-TTTTC--TTTCG
1 TATTTTTTTATTTTCTATTTCG
12782325 TATTTTTTTA
1 TATTTTTTTA
12782335 CTATTATCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
18 7 0.16
19 6 0.14
20 4 0.09
21 11 0.26
22 11 0.26
23 4 0.09
ACGTcount: A:0.11, C:0.10, G:0.04, T:0.75
Consensus pattern (22 bp):
TATTTTTTTATTTTCTATTTCG
Found at i:12782318 original size:18 final size:18
Alignment explanation
Indices: 12782290--12782333 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
12782280 ATTTCTATTT
12782290 TTTTCTTTTTTCTTTCGTA
1 TTTT-TTTTTTCTTTCGTA
12782309 TTTTTTTTTTCTTTCGTA
1 TTTTTTTTTTCTTTCGTA
12782327 TTTTTTT
1 TTTTTTT
12782334 ACTATTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.05, C:0.11, G:0.05, T:0.80
Consensus pattern (18 bp):
TTTTTTTTTTCTTTCGTA
Found at i:12784256 original size:29 final size:30
Alignment explanation
Indices: 12784211--12784270 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
12784201 AAGTTTTTAG
*
12784211 GATCCACACGGGTAGG-CACACGCCCATGT
1 GATCCACACGGGCAGGCCACACGCCCATGT
* *
12784240 GATCCACACTGGCAGGCCATACGCCCATGT
1 GATCCACACGGGCAGGCCACACGCCCATGT
12784270 G
1 G
12784271 CCAGCCTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.23, C:0.35, G:0.27, T:0.15
Consensus pattern (30 bp):
GATCCACACGGGCAGGCCACACGCCCATGT
Found at i:12788579 original size:43 final size:43
Alignment explanation
Indices: 12788518--12788685 Score: 248
Period size: 43 Copynumber: 3.9 Consensus size: 43
12788508 ACATATCATT
* * *
12788518 TCACTGGCATTACGCCTGCTAGCCACGAAGGCCCGAATACACA
1 TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
12788561 TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
12788604 TCA-TCGGCATGAATCCTGCTAGGCACGAAGGCTCGAATACACA
1 TCACT-GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * *
12788647 TCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATA
12788686 TAATACCAGC
Statistics
Matches: 113, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 112 0.99
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.15
Consensus pattern (43 bp):
TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:12788731 original size:38 final size:38
Alignment explanation
Indices: 12788678--12788785 Score: 139
Period size: 38 Copynumber: 2.8 Consensus size: 38
12788668 GGCACGAAGG
* * *
12788678 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACTAAGCCTGCGGGATTTAA
* *
12788716 CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACTAAGCCTGCGGGATTTAA
12788754 CCCGGATATAATT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATAT-ATTACCAGCACTA-AGCCTGCGGG
12788786 TAGGCCCGGA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
37 1 0.02
38 57 0.93
39 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACTAAGCCTGCGGGATTTAA
Found at i:12796641 original size:19 final size:17
Alignment explanation
Indices: 12796617--12796652 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
12796607 TAAGGCTCAT
12796617 TTTCCTTTTTCCGTTCTTC
1 TTTCC-TTTTCC-TTCTTC
12796636 TTTCCTTTTCCTTCTTC
1 TTTCCTTTTCCTTCTTC
12796653 CGTTCTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTCCTTTTCCTTCTTC
Found at i:12803614 original size:16 final size:16
Alignment explanation
Indices: 12803588--12803639 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
12803578 AGTAGATCAG
12803588 CAAAA-GCCGAAAAGT
1 CAAAATGCCGAAAAGT
12803603 CAAAATGCCGAAAAGT
1 CAAAATGCCGAAAAGT
* * *
12803619 CGAAATACCGAAAAGC
1 CAAAATGCCGAAAAGT
12803635 CAAAA
1 CAAAA
12803640 GTTTGGCTGC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 5 0.16
16 27 0.84
ACGTcount: A:0.54, C:0.21, G:0.17, T:0.08
Consensus pattern (16 bp):
CAAAATGCCGAAAAGT
Found at i:12803917 original size:57 final size:58
Alignment explanation
Indices: 12803856--12803996 Score: 144
Period size: 57 Copynumber: 2.5 Consensus size: 58
12803846 CATGAATGTT
* * * *
12803856 ATGTGATTTGGGCCGGTTGGGCCATATAAATGAG-ATTAGGCCTAATGGGCCATATGA
1 ATGTGAATTGGGCCGGATGGGCCATATAAATGAGAATTAGGCCGAATGGGCCATATAA
** * * * *
12803913 ATGTGAATTGGGCTTGATGGGCCATATGAATGTGAATTGGGCCGGATGGGCCATATAA
1 ATGTGAATTGGGCCGGATGGGCCATATAAATGAGAATTAGGCCGAATGGGCCATATAA
* **
12803971 ATGAG-A-TGGGCCAAATGGGCCATATA
1 ATGTGAATTGGGCCGGATGGGCCATATA
12803997 CATGTATGTA
Statistics
Matches: 68, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
56 16 0.24
57 29 0.43
58 23 0.34
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (58 bp):
ATGTGAATTGGGCCGGATGGGCCATATAAATGAGAATTAGGCCGAATGGGCCATATAA
Found at i:12803938 original size:29 final size:29
Alignment explanation
Indices: 12803856--12804001 Score: 145
Period size: 29 Copynumber: 5.1 Consensus size: 29
12803846 CATGAATGTT
* * *
12803856 ATGTGATTTGGGCCGGTTGGGCCATATAA
1 ATGTGAATTGGGCCTGATGGGCCATATAA
* * * *
12803885 ATGAG-ATTAGGCCTAATGGGCCATATGA
1 ATGTGAATTGGGCCTGATGGGCCATATAA
* *
12803913 ATGTGAATTGGGCTTGATGGGCCATATGA
1 ATGTGAATTGGGCCTGATGGGCCATATAA
*
12803942 ATGTGAATTGGGCCGGATGGGCCATATAA
1 ATGTGAATTGGGCCTGATGGGCCATATAA
* ** *
12803971 ATGAG-A-TGGGCCAAATGGGCCATATAC
1 ATGTGAATTGGGCCTGATGGGCCATATAA
12803998 ATGT
1 ATGT
12804002 ATGTAGGGGT
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
27 21 0.22
28 22 0.23
29 54 0.56
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (29 bp):
ATGTGAATTGGGCCTGATGGGCCATATAA
Found at i:12807034 original size:14 final size:14
Alignment explanation
Indices: 12807011--12807048 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
12807001 CCAGAAAAGT
*
12807011 AAATCGTTTTCCAG
1 AAATCATTTTCCAG
12807025 AAATCATTTTCCAG
1 AAATCATTTTCCAG
12807039 AAATCATTTT
1 AAATCATTTT
12807049 ACTGGCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:12811894 original size:37 final size:38
Alignment explanation
Indices: 12811818--12811895 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 38
12811808 TAAATTAATA
* * * *
12811818 AATTAATAACTTGTTTTTCAATTATTATCATTCTATAT
1 AATTAATAAATTGTTATTCAAATATTAACATTCTATAT
*
12811856 AATTAATAAATTG-TATTCAAATA-TAACATTTTATTAT
1 AATTAATAAATTGTTATTCAAATATTAACATTCTA-TAT
12811893 AAT
1 AAT
12811896 GTGTAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 8 0.24
37 14 0.41
38 12 0.35
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.49
Consensus pattern (38 bp):
AATTAATAAATTGTTATTCAAATATTAACATTCTATAT
Found at i:12815768 original size:46 final size:46
Alignment explanation
Indices: 12815694--12815781 Score: 113
Period size: 46 Copynumber: 1.9 Consensus size: 46
12815684 TTACATATTT
* *
12815694 GCACTTAGTGTACAAGATTGAGATAGCTTCAACTATATATTTCTTG
1 GCACTTAGTGTACAAGATTAAGACAGCTTCAACTATATATTTCTTG
* * * * *
12815740 GCACTTAGTGTGCGAGATTAATACAGCTTCGACTATTTATTT
1 GCACTTAGTGTACAAGATTAAGACAGCTTCAACTATATATTT
12815782 GGCACTAAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 35 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (46 bp):
GCACTTAGTGTACAAGATTAAGACAGCTTCAACTATATATTTCTTG
Found at i:12825526 original size:44 final size:44
Alignment explanation
Indices: 12825462--12825549 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
12825452 GGGGTTAGAA
* *
12825462 TTGTAAATCTGCATCTAGTTCTGTTTCTATATATGATATATGTT
1 TTGTAAATCTGCATCCAGTTCTGTTTATATATATGATATATGTT
*
12825506 TTGTAAATTTGCATCCAGTTCTGTTTATATATATGATATATGTT
1 TTGTAAATCTGCATCCAGTTCTGTTTATATATATGATATATGTT
12825550 CTGTGCCTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (44 bp):
TTGTAAATCTGCATCCAGTTCTGTTTATATATATGATATATGTT
Found at i:12835876 original size:40 final size:40
Alignment explanation
Indices: 12835677--12835861 Score: 311
Period size: 40 Copynumber: 4.6 Consensus size: 40
12835667 CGGATGATAA
* *
12835677 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
12835717 CCGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
12835757 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
12835797 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
12835837 CCGGGCTAAGTCCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
12835862 AGCAAGTAGT
Statistics
Matches: 139, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
39 1 0.01
40 136 0.98
41 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:12835876 original size:80 final size:79
Alignment explanation
Indices: 12835677--12835889 Score: 288
Period size: 80 Copynumber: 2.7 Consensus size: 79
12835667 CGGATGATAA
* *
12835677 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTC-CCGAAGGCATT
12835740 TGTGCGAGTTACTATAT
63 TGTGCGAGTTACTATAT
* *
12835757 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCATTTG
12835822 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
* * * *
12835837 CCGGGCTAAGTCCTGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCC
12835890 AAAGATGCTT
Statistics
Matches: 122, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
79 12 0.10
80 107 0.88
81 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:12836161 original size:22 final size:21
Alignment explanation
Indices: 12836120--12836162 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
12836110 GAATGTGCAT
12836120 ATATGAAGTTATCCATTTAGCA
1 ATATGAAGTTATCCA-TTAGCA
12836142 ATATGAATGTTATACC-TTAGC
1 ATATGAA-GTTAT-CCATTAGC
12836163 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 12 0.63
23 5 0.26
24 2 0.11
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCA
Found at i:12848474 original size:6 final size:6
Alignment explanation
Indices: 12848463--12848493 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
12848453 TCATCTTTTA
*
12848463 TTTATT TTTATT TTTATT TTTATC TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT T
12848494 ATCTCTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:12848522 original size:29 final size:26
Alignment explanation
Indices: 12848479--12848538 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
12848469 TTTATTTTTA
*
12848479 TTTTTATCTTTATTTATCTCTTTAACTTAC
1 TTTTTATCTCTA-TT-TCTCTTTAA--TAC
12848509 TTTTTATC-CTATTTCTCTTTAATAC
1 TTTTTATCTCTATTTCTCTTTAATAC
12848534 TTTTT
1 TTTTT
12848539 TTCTTCATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 8 0.28
27 9 0.31
28 2 0.07
29 2 0.07
30 8 0.28
ACGTcount: A:0.18, C:0.17, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTTTATCTCTATTTCTCTTTAATAC
Found at i:12849327 original size:42 final size:44
Alignment explanation
Indices: 12849218--12849329 Score: 115
Period size: 42 Copynumber: 2.6 Consensus size: 44
12849208 AAACAAGTAC
* ** *
12849218 AATGCCGACGTCCCAGATGTGGTCTTACATGTAATTCAATATCG
1 AATGCCGATGTCCCAGAAATGGTCTTACATGTAAATCAATATCG
** *
12849262 AAT-CCTCTGTCCCAGAAAAGGTCTTACATG-AAATCAGATA-CG
1 AATGCCGATGTCCCAGAAATGGTCTTACATGTAAATCA-ATATCG
*
12849304 -ATGCCGATGTCCCAGACATGGTCTTA
1 AATGCCGATGTCCCAGAAATGGTCTTA
12849330 TACATAAATC
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
41 2 0.04
42 26 0.47
43 24 0.44
44 3 0.05
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (44 bp):
AATGCCGATGTCCCAGAAATGGTCTTACATGTAAATCAATATCG
Found at i:12856724 original size:41 final size:41
Alignment explanation
Indices: 12856655--12856872 Score: 273
Period size: 41 Copynumber: 5.3 Consensus size: 41
12856645 AAAGCAATAG
* *
12856655 AAACGCTGCTAAAAA-CAGAGCAATAGCGGCTTTTTCGGTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCTTTTTCGGTA
* **
12856695 AAACGCCGATAAAAACCAGAGCATTAGCGGCGCTTTCGGTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCTTTTTCGGTA
* **
12856736 AAACGCCGCTAAAAACCAGAGCATTAGCTGCCCTTTCGGTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCTTTTTCGGTA
* *
12856777 AAACGCCGCTAAATACCAGAGCATTGGCGG-TGCTTTT-GGTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCT--TTTTCGGTA
* *
12856818 AAACGCCGCTAAAAACCAGAGCATTAGCGG-TGTTTTTGCTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCT-TTTTCGGTA
12856859 AAACGCCGCTAAAA
1 AAACGCCGCTAAAA
12856873 GTCATATAAC
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
40 17 0.11
41 137 0.87
42 3 0.02
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (41 bp):
AAACGCCGCTAAAAACCAGAGCATTAGCGGCTTTTTCGGTA
Found at i:12857155 original size:7 final size:7
Alignment explanation
Indices: 12857143--12857249 Score: 58
Period size: 7 Copynumber: 15.0 Consensus size: 7
12857133 TAGAGATTAT
12857143 GGTTTAG
1 GGTTTAG
12857150 GGTTTAG
1 GGTTTAG
12857157 GG-TT-G
1 GGTTTAG
*
12857162 GAGTTTAA
1 G-GTTTAG
*
12857170 GGTGTAAG
1 GGT-TTAG
*
12857178 GGTTTGG
1 GGTTTAG
*
12857185 GGTTAAG
1 GGTTTAG
12857192 GGTTTAG
1 GGTTTAG
* *
12857199 TGTTTAA
1 GGTTTAG
*
12857206 TGTTTAG
1 GGTTTAG
*
12857213 TGTTTATG
1 GGTTTA-G
*
12857221 GG-ATAGG
1 GGTTTA-G
*
12857228 GGTTAAG
1 GGTTTAG
12857235 AGGTTTAG
1 -GGTTTAG
12857243 GGTTTAG
1 GGTTTAG
12857250 ATTAATTAGT
Statistics
Matches: 76, Mismatches: 17, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
5 2 0.03
6 3 0.04
7 56 0.74
8 15 0.20
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (7 bp):
GGTTTAG
Found at i:12860617 original size:30 final size:29
Alignment explanation
Indices: 12860575--12860660 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 29
12860565 GGATTTCAGC
12860575 AATTTTTTAATGTAGTCAATGTTATTCAA
1 AATTTTTTAATGTAGTCAATGTTATTCAA
** *
12860604 AATTTTTTCAATGTAGTCAATGTTGCTCAG
1 AATTTTTT-AATGTAGTCAATGTTATTCAA
12860634 AATTTTTTAATGTAGTCAATGTTATTC
1 AATTTTTTAATGTAGTCAATGTTATTC
12860661 CGGTATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
29 25 0.49
30 26 0.51
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (29 bp):
AATTTTTTAATGTAGTCAATGTTATTCAA
Found at i:12863222 original size:29 final size:29
Alignment explanation
Indices: 12863183--12863254 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
12863173 AGAAAATGAT
12863183 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATTTCA
12863212 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATTTCA
*
12863241 AACAAAAGTGACTA
1 AACATAAGTGACTA
12863255 TTTTTGTAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATTTCA
Found at i:12866492 original size:46 final size:45
Alignment explanation
Indices: 12866349--12866492 Score: 111
Period size: 46 Copynumber: 3.1 Consensus size: 45
12866339 CCCGCCCATA
*
12866349 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* * *
12866398 --CGAACTCGGACTCAACTCAACGAGTTC--A-GACATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
*
12866441 AAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
12866488 AGTGA
1 AGTGA
12866493 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 2 0.03
45 1 0.01
46 30 0.39
47 26 0.34
48 6 0.08
49 2 0.03
50 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:12869729 original size:75 final size:75
Alignment explanation
Indices: 12869644--12869790 Score: 231
Period size: 75 Copynumber: 2.0 Consensus size: 75
12869634 GTTGTCCCAT
* *
12869644 AATTTTTTGATGTCATGGGAAACAAGTTGACAACATATTTGCAACGTGTTTACTGCTTCTATTAG
1 AATTTTTTGATGTCATGGGAAACAAGTTGACAACATATTCGCAACGTGTTAACTGCTTCTATTAG
12869709 GATTTTGTAG
66 GATTTTGTAG
* ** * *
12869719 AATTTTTTGATGTCATGTGAAACCGGTTGACAACATGTTCGCAACTTGTTAACTGCTTCTATTAG
1 AATTTTTTGATGTCATGGGAAACAAGTTGACAACATATTCGCAACGTGTTAACTGCTTCTATTAG
12869784 GATTTTG
66 GATTTTG
12869791 CATATAAATT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.40
Consensus pattern (75 bp):
AATTTTTTGATGTCATGGGAAACAAGTTGACAACATATTCGCAACGTGTTAACTGCTTCTATTAG
GATTTTGTAG
Found at i:12870047 original size:35 final size:35
Alignment explanation
Indices: 12869989--12870444 Score: 258
Period size: 35 Copynumber: 12.6 Consensus size: 35
12869979 GACAAAGATC
** **
12869989 TATCCCAACCTTTTTAAATTTGCCTTAGATGGGTT
1 TATCCCAACCTTTTTAAGGTTGCCTTAGAAAGGTT
12870024 TA-CCCTAACCTTTTTAAGGTTGCCTTAGACAA-GTT
1 TATCCC-AACCTTTTTAAGGTTGCCTTAGA-AAGGTT
* * *
12870059 TATCCCAACTTTTTTTAA-GTTGCCTTGGAAAAGGTC
1 TATCCCAAC-CTTTTTAAGGTTGCCTTAG-AAAGGTT
* * *
12870095 TATCCCAACCTTTTTAAGGTTGCTTTA-AACGAGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAGAAAG-GTT
* * * * *
12870130 TATCCCAACATTTCTAAGGTTGTCTTAGATAGGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAGAAAGGTT
* * ** *
12870165 AATCCCAACTTTTTTTAAAATTTACCTTAGACAAGGTT
1 TATCCCAAC-CTTTTT-AAGGTTGCCTTAGA-AAGGTT
* * * *
12870203 TATCCCAACCTTTTTAAGGTTACCTTA-AACGAATC
1 TATCCCAACCTTTTTAAGGTTGCCTTAGAAAG-GTT
* **
12870238 TATCCCAACTTTTTTAAGGTTGTTTTAGATAA-GTT
1 TATCCCAACCTTTTTAAGGTTGCCTTAGA-AAGGTT
* * * *
12870273 TATTCCAACCTTTTTCGAAAGTTGCCTTAGACAAGATC
1 TATCCCAACCTTTTT--AAGGTTGCCTTAGA-AAGGTT
* * *
12870311 TATCCTAACTTTTTTTAAAGGTTGCCTTAGACAAGGTC
1 TATCCCAAC-CTTTTT-AAGGTTGCCTTAGA-AAGGTT
* ** ** ** *
12870349 TATCCCAAACTTTTTTAAAATATATCTTAGACTGGTC
1 TATCCC-AACCTTTTTAAGGT-TGCCTTAGAAAGGTT
* * * ** *
12870386 TATTCCAACCTTTTTAATGTTGCGTTAGATGGGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAGAAAGGTT
12870421 TATCCCAACCTTTTTCAATGGTTG
1 TATCCCAACCTTTTT-AA-GGTTG
12870445 GTCTTGACTA
Statistics
Matches: 326, Mismatches: 72, Indels: 44
0.74 0.16 0.10
Matches are distributed among these distances:
34 8 0.02
35 149 0.46
36 59 0.18
37 45 0.14
38 57 0.17
39 8 0.02
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (35 bp):
TATCCCAACCTTTTTAAGGTTGCCTTAGAAAGGTT
Found at i:12870114 original size:71 final size:72
Alignment explanation
Indices: 12870034--12870364 Score: 278
Period size: 71 Copynumber: 4.6 Consensus size: 72
12870024 TACCCTAACC
* *
12870034 TTTTTAAGGTTGCCTTAGACAAGTTTATCCCAACTTTTTTTAA-GTTGCCTTGGAAAAGGTCTAT
1 TTTTTAAGGTTGCCTTAGACAAGTTTATCCCAACTTTTTTTAAGGTTGCCTTAGAAAAGATCTAT
*
12870098 CCCAACC
66 CCCAACT
* * * * * * * * * *
12870105 TTTTTAAGGTTGCTTTAAACGAGTCTATCCCAAC-ATTTCTAAGGTTGTCTTAG-ATAGGTCAAT
1 TTTTTAAGGTTGCCTTAGACAAGTTTATCCCAACTTTTTTTAAGGTTGCCTTAGAAAAGATCTAT
12870168 CCCAACTT
66 CCCAAC-T
** * * * *
12870176 TTTTTAAAATTTACCTTAGACAAGGTTTATCCCAAC-CTTTTTAAGGTTACCTT--AAACGAATC
1 TTTTT-AAGGTTGCCTTAGACAA-GTTTATCCCAACTTTTTTTAAGGTTGCCTTAGAAAAG-ATC
12870238 TATCCCAACT
63 TATCCCAACT
** * * ** * *
12870248 TTTTTAAGGTTGTTTTAGATAAGTTTATTCCAACCTTTTTCGAAAGTTGCCTTAGACAAGATCTA
1 TTTTTAAGGTTGCCTTAGACAAGTTTATCCCAA-CTTTTTTTAAGGTTGCCTTAGAAAAGATCTA
*
12870313 TCCTAACTT
65 TCCCAAC-T
*
12870322 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAAACTTTTTT
1 TTTTT-AAGGTTGCCTTAGACAA-GTTTATCCC-AACTTTTTT
12870365 AAAATATATC
Statistics
Matches: 199, Mismatches: 47, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
70 30 0.15
71 55 0.28
72 31 0.16
73 45 0.23
74 9 0.05
75 14 0.07
76 13 0.07
77 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (72 bp):
TTTTTAAGGTTGCCTTAGACAAGTTTATCCCAACTTTTTTTAAGGTTGCCTTAGAAAAGATCTAT
CCCAACT
Found at i:12870231 original size:108 final size:107
Alignment explanation
Indices: 12869978--12870444 Score: 395
Period size: 108 Copynumber: 4.3 Consensus size: 107
12869968 ATTGGACATG
* ** * * * * *
12869978 AGACAAAGATCTATCCCAACCTTTTTAAATTTGCCTTAGATGGGTTTA-CCCTAACCTTTTTAAG
1 AGAC-AAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCC-AACATTTTTAAG
* *
12870042 GTTGCCTTAGACAAGTTTATCCCAACTTTTTTT-AAGTTGCCTT
64 GTTGTCTTAGATAAGTTTATCCCAACTTTTTTTAAAGTTGCCTT
* * * *
12870085 GGAAAAGGTCTATCCCAACCTTTTTAAGGTTGCTTTAAACGAGTCTATCCCAACATTTCTAAGGT
1 AGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCCAACATTTTTAAGGT
* ** * *
12870150 TGTCTTAGATAGGTCAATCCCAACTTTTTTTAAAATTTACCTT
66 TGTCTTAGATAAGTTTATCCCAACTTTTTTT-AAAGTTGCCTT
* * * *
12870193 AGACAAGGTTTATCCCAACCTTTTTAAGGTTACCTTAAACGAATCTATCCCAACTTTTTTAAGGT
1 AGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCCAACATTTTTAAGGT
* * **
12870258 TGTTTTAGATAAGTTTATTCCAACCTTTTTCGAAAGTTGCCTT
66 TGTCTTAGATAAGTTTATCCCAA-CTTTTTTTAAAGTTGCCTT
* * * * * *
12870301 AGACAAGATCTATCCTAACTTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAAACTTTTTTA
1 AGACAAGGTCTATCCCAAC-CTTTTT-AAGGTTGCCTTAAACGA-GTCTATCCC-AACATTTTTA
** * * * * * * *
12870366 AAATATATCTTAGACT-GGTCTATTCCAAC-CTTTTTAATGTTGCGTT
62 AGGT-TGTCTTAGA-TAAGTTTATCCCAACTTTTTTTAAAGTTGCCTT
**
12870412 AGA-TGGGTCTATCCCAACCTTTTTCAATGGTTG
1 AGACAAGGTCTATCCCAACCTTTTT-AA-GGTTG
12870445 GTCTTGACTA
Statistics
Matches: 288, Mismatches: 61, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
106 73 0.25
107 5 0.02
108 108 0.38
109 18 0.06
110 30 0.10
111 23 0.08
112 13 0.05
113 17 0.06
114 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (107 bp):
AGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCCAACATTTTTAAGGT
TGTCTTAGATAAGTTTATCCCAACTTTTTTTAAAGTTGCCTT
Found at i:12870243 original size:143 final size:145
Alignment explanation
Indices: 12870046--12870363 Score: 349
Period size: 143 Copynumber: 2.2 Consensus size: 145
12870036 TTTAAGGTTG
* * *
12870046 CCTTAGACAA-GTTTATCCCAACTTTTTTTAAGTTGCCTTGGAAAAGGTCTATCCCAACCTTTTT
1 CCTTAGACAAGGTTTATCCCAAC-CTTTTTAAGTTACCTT-GAAAAGATCTATCCCAACCTTTTT
* * * * * *
12870110 AAGGTTGCTTTAAACGAGTCTATCCCAA-C-ATTTCTAAGGTTGTCTTAGA-TAGGTCAATCCCA
64 AAGGTTGCTTTAAACAAGTCTATCCCAACCTATTTCGAAAGTTGCCTTAGACAAGATCAATCCCA
*
12870172 ACTTTTTTTAAAATTTA
129 ACTTTTTTTAAAAGTTA
* *
12870189 CCTTAGACAAGGTTTATCCCAACCTTTTTAAGGTTACCTT-AAACGAATCTATCCCAACTTTTTT
1 CCTTAGACAAGGTTTATCCCAACCTTTTTAA-GTTACCTTGAAAAG-ATCTATCCCAACCTTTTT
* * * * * * * *
12870253 AAGGTTGTTTTAGATAAGTTTATTCCAACCTTTTTCGAAAGTTGCCTTAGACAAGATCTATCCTA
64 AAGGTTGCTTTAAACAAGTCTATCCCAACCTATTTCGAAAGTTGCCTTAGACAAGATCAATCCCA
* *
12870318 ACTTTTTTTAAAGGTTG
129 ACTTTTTTTAAAAGTTA
* *
12870335 CCTTAGACAAGGTCTATCCCAAACTTTTT
1 CCTTAGACAAGGTTTATCCCAACCTTTTT
12870364 TAAAATATAT
Statistics
Matches: 145, Mismatches: 24, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
142 4 0.03
143 55 0.38
144 20 0.14
145 16 0.11
146 50 0.34
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (145 bp):
CCTTAGACAAGGTTTATCCCAACCTTTTTAAGTTACCTTGAAAAGATCTATCCCAACCTTTTTAA
GGTTGCTTTAAACAAGTCTATCCCAACCTATTTCGAAAGTTGCCTTAGACAAGATCAATCCCAAC
TTTTTTTAAAAGTTA
Found at i:12870468 original size:38 final size:36
Alignment explanation
Indices: 12870373--12870471 Score: 98
Period size: 35 Copynumber: 2.7 Consensus size: 36
12870363 TTAAAATATA
12870373 TCTTAGACTGGTCTATT-CCAACCTTTTTAATGTTGCG
1 TCTT-GACTGGTCT-TTCCCAACCTTTTTAATGTTGCG
* *
12870410 T-TAGA-TGGGTCTATCCCAACCTTTTTCAATGGTTG-G
1 TCTTGACT-GGTCTTTCCCAACCTTTTT-AAT-GTTGCG
12870446 TCTTGACTAGGTCTTTCCCAACCTTT
1 TCTTGACT-GGTCTTTCCCAACCTTT
12870472 CAATAAGGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
34 2 0.04
35 18 0.35
36 6 0.12
37 8 0.16
38 17 0.33
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.41
Consensus pattern (36 bp):
TCTTGACTGGTCTTTCCCAACCTTTTTAATGTTGCG
Found at i:12872198 original size:25 final size:26
Alignment explanation
Indices: 12872170--12872218 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
12872160 TGATAAGTGA
12872170 TATATAAAAAAATATAT-ATAAAATG
1 TATATAAAAAAATATATAATAAAATG
* *
12872195 TATATAATATAATATATAATAAAA
1 TATATAAAAAAATATATAATAAAA
12872219 GGAAGATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
TATATAAAAAAATATATAATAAAATG
Found at i:12872434 original size:31 final size:30
Alignment explanation
Indices: 12872398--12872456 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
12872388 AAAAGAAAAA
*
12872398 AATGTAAGAAATAATATATATAGTAAAATAT
1 AATGTAAGAAATAATATATA-AATAAAATAT
* * *
12872429 AATGTATGATATAATTTATAAATAAAAT
1 AATGTAAGAAATAATATATAAATAAAAT
12872457 GTATAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 7 0.29
31 17 0.71
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (30 bp):
AATGTAAGAAATAATATATAAATAAAATAT
Found at i:12874159 original size:44 final size:44
Alignment explanation
Indices: 12874092--12874293 Score: 226
Period size: 44 Copynumber: 4.6 Consensus size: 44
12874082 CTTAGGAATA
* * * **
12874092 CCAAATCTGTTAACTTCGATCTGCTCTCAGACACTACAAAAACG
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAAAACAAAAACG
* * * *
12874136 CCAGATCTGCTATCTTCGATCTGCTCTCTGATAAAACAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAAAACAAAAACG
* * * * *
12874180 CCAAATCTGTTATCTTTGATCTGCTCTCTGACAATACAAAGACA
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAAAACAAAAACG
* * * *
12874224 CCAAATCTGCTATCTTTGATCTACTCTCTGAAAAAATAGAAAA-G
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAAAACA-AAAACG
12874268 CCAAATCTGCTATCTTCGATCTGCTC
1 CCAAATCTGCTATCTTCGATCTGCTC
12874294 CTTGTGAGCG
Statistics
Matches: 132, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
44 129 0.98
45 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (44 bp):
CCAAATCTGCTATCTTCGATCTGCTCTCTGACAAAACAAAAACG
Found at i:12874316 original size:88 final size:88
Alignment explanation
Indices: 12874092--12874996 Score: 298
Period size: 88 Copynumber: 10.3 Consensus size: 88
12874082 CTTAGGAATA
* * * * *
12874092 CCAAATCTGTTAACTTCGATCTGCTCTCAGAC-ACTACAAAAACGCCAGATCTGCTATCTTCGAT
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAAC-ACAAAGACGCCAAATCTGCTATCTTCGAT
* * * *
12874156 CTGCTCTCTGATAAAACAGAGACG
65 CTACTCTCTGAAAAAACAGAAAAG
* * * * *
12874180 CCAAATCTGTTATCTTTGATCTGCTCTCTGACAATACAAAGACACCAAATCTGCTATCTTTGATC
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAACACAAAGACGCCAAATCTGCTATCTTCGATC
*
12874245 TACTCTCTGAAAAAATAGAAAAG
66 TACTCTCTGAAAAAACAGAAAAG
** * * * * *
12874268 CCAAATCTGCTATCTTCGATCTGCTC-CTTGTGAGCGCAAGGATGCCAAA--T-C-ATCTTGGAT
1 CCAAATCTGCTATCTTCGATCTGCTCTC-TGACAACACAAAGACGCCAAATCTGCTATCTTCGAT
* * * * * *
12874328 TTGCTTTGATGCAAAAACATCCG-AAGG
65 CTACTCT-CTG-AAAAA-A-CAGAAAAG
** * * * * * *** * * * *
12874355 TTAGATCTGCTATGTCTTCGATCTGCTTTCCGTCGAATATGGAGATGCCAAATCT-ATTTTTTCG
1 CCAAATCTGCTA--TCTTCGATCTGCTCTCTGAC-AACACAAAGACGCCAAATCTGCTATCTTCG
* ** * * * *
12874419 ATTTGTTCTCTGACAATACAGAGATG
63 ATCTACTCTCTGAAAAAACAGAAAAG
* * * * * * *
12874445 CCAAATCTGCTATCTTCGATCTTC-CCCTTGTA-AGCGCAAGGATGCCAAA--T-C-ATCTTGGA
1 CCAAATCTGCTATCTTCGATCTGCTCTC-TG-ACAACACAAAGACGCCAAATCTGCTATCTTCGA
* * *
12874504 TCTGCT-TCGATGCAAAAACATCCG-AAGG
64 TCTACTCTC--TG-AAAAA-A-CAGAAAAG
** * * * * *** * *
12874532 TTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG-TTTCTTCG
1 CCAAATCTGCTA--TCTTCGATCTGCTCTCTGAC-AACACAAAGACGCCAAATCTGCTATCTTCG
* * * * * * *
12874596 ATTTATTTTCTGACAATACAGAGATG
63 ATCTACTCTCTGAAAAAACAGAAAAG
* ** * * * * *
12874622 CCAAATCTGCTATTTTTTATCTGCTCTCTGACTATACAGAGATGCCAAATCTGCTATCTTTGATC
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAACACAAAGACGCCAAATCTGCTATCTTCGATC
* ** * * *
12874687 TGCTCTCTGACTATACAGAGATG
66 TACTCTCTGAAAAAACAGAAAAG
* * * * * *
12874710 CCAAATCTGCTATCTTTGATATGCTCACTGACAATACAGAGATGCCAAATCTGCTATCTTCGATC
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAACACAAAGACGCCAAATCTGCTATCTTCGATC
* * * * * *
12874775 TGCTCCCTGACAATACAGAGACG
66 TACTCTCTGAAAAAACAGAAAAG
* * * * * * * * *
12874798 TCAAATATGCTATCTTTGATCTGTTCTCTGACTATACAGAGATGCCAAATCTGCTATCTTTGATC
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAACACAAAGACGCCAAATCTGCTATCTTCGATC
* ** * * *
12874863 TGCTCTCTGACTATACAGAGATG
66 TACTCTCTGAAAAAACAGAAAAG
* * * * * * * * *
12874886 TCAAATCTGCTATCTTTGATCTGCTCCCTAACAATACAGAGACACCAAATCTGCTATTTTTGATC
1 CCAAATCTGCTATCTTCGATCTGCTCTCTGACAACACAAAGACGCCAAATCTGCTATCTTCGATC
* * * * *
12874951 TGCTCTCT-AACTATACAGAGATG
66 TACTCTCTGAA-AAAACAGAAAAG
* *
12874974 CCAAATTTGCTATCTTTGATCTG
1 CCAAATCTGCTATCTTCGATCTG
12874997 TTCCTTGTAA
Statistics
Matches: 629, Mismatches: 154, Indels: 68
0.74 0.18 0.08
Matches are distributed among these distances:
83 2 0.00
84 21 0.03
85 6 0.01
86 9 0.01
87 56 0.09
88 422 0.67
89 32 0.05
90 47 0.07
91 6 0.01
92 6 0.01
93 20 0.03
94 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (88 bp):
CCAAATCTGCTATCTTCGATCTGCTCTCTGACAACACAAAGACGCCAAATCTGCTATCTTCGATC
TACTCTCTGAAAAAACAGAAAAG
Found at i:12874450 original size:177 final size:177
Alignment explanation
Indices: 12874267--12874634 Score: 646
Period size: 177 Copynumber: 2.1 Consensus size: 177
12874257 AAATAGAAAA
* * *
12874267 GCCAAATCTGCTATCTTCGATCTGCTCCTTGTGAGCGCAAGGATGCCAAATCATCTTGGATTTGC
1 GCCAAATCTGCTATCTTCGATCTGCCCCTTGTAAGCGCAAGGATGCCAAATCATCTTGGATCTGC
* *
12874332 TTTGATGCAAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTTTCCGTCGAATATGG
66 TTCGATGCAAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGG
* *
12874397 AGATGCCAAATCTATTTTTTCGATTTGTTCTCTGACAATACAGAGAT
131 AGATGCCAAATCTATTTCTTCGATTTATTCTCTGACAATACAGAGAT
*
12874444 GCCAAATCTGCTATCTTCGATCTTCCCCTTGTAAGCGCAAGGATGCCAAATCATCTTGGATCTGC
1 GCCAAATCTGCTATCTTCGATCTGCCCCTTGTAAGCGCAAGGATGCCAAATCATCTTGGATCTGC
12874509 TTCGATGCAAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGG
66 TTCGATGCAAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGG
* *
12874574 AGATGCCAAATCTGTTTCTTCGATTTATTTTCTGACAATACAGAGAT
131 AGATGCCAAATCTATTTCTTCGATTTATTCTCTGACAATACAGAGAT
12874621 GCCAAATCTGCTAT
1 GCCAAATCTGCTAT
12874635 TTTTTATCTG
Statistics
Matches: 181, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 181 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (177 bp):
GCCAAATCTGCTATCTTCGATCTGCCCCTTGTAAGCGCAAGGATGCCAAATCATCTTGGATCTGC
TTCGATGCAAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGG
AGATGCCAAATCTATTTCTTCGATTTATTCTCTGACAATACAGAGAT
Found at i:12874663 original size:44 final size:44
Alignment explanation
Indices: 12874573--12874996 Score: 589
Period size: 44 Copynumber: 9.7 Consensus size: 44
12874563 GTCGAATATG
* * * ** * *
12874573 GAGATGCCAAATCTG-TTTCTTCGATTTATTTTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
* *
12874616 GAGATGCCAAATCTGCTATTTTTTATCTGCTCTCTGACTATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
12874660 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
* * *
12874704 GAGATGCCAAATCTGCTATCTTTGATATGCTCACTGACAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
* * *
12874748 GAGATGCCAAATCTGCTATCTTCGATCTGCTCCCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
* * * *
12874792 GAGACGTCAAATATGCTATCTTTGATCTGTTCTCTGACTATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
12874836 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
* * * *
12874880 GAGATGTCAAATCTGCTATCTTTGATCTGCTCCCTAACAATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
** * *
12874924 GAGACACCAAATCTGCTATTTTTGATCTGCTCTCTAACTATACA
1 GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
*
12874968 GAGATGCCAAATTTGCTATCTTTGATCTG
1 GAGATGCCAAATCTGCTATCTTTGATCTG
12874997 TTCCTTGTAA
Statistics
Matches: 338, Mismatches: 42, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
43 15 0.04
44 323 0.96
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (44 bp):
GAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACTATACA
Found at i:12887329 original size:15 final size:15
Alignment explanation
Indices: 12887309--12887420 Score: 58
Period size: 15 Copynumber: 7.7 Consensus size: 15
12887299 ATGATAAGTA
12887309 ATATATAAAAAATAT
1 ATATATAAAAAATAT
*
12887324 ATATAT--AAAATGT
1 ATATATAAAAAATAT
* *
12887337 ATATA-ATATAATAT
1 ATATATAAAAAATAT
*
12887351 ATA-ATAAAAGGAAGAT
1 ATATATAAAA--AATAT
**
12887367 AT-TATAAGGAATA-
1 ATATATAAAAAATAT
12887380 ATATATAAGAAAATAT
1 ATATATAA-AAAATAT
* *
12887396 A-ATATGTAATAATAT
1 ATATAT-AAAAAATAT
*
12887411 ATAAATAAAA
1 ATATATAAAA
12887421 TATAACGAAA
Statistics
Matches: 70, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
13 14 0.20
14 18 0.26
15 23 0.33
16 15 0.21
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (15 bp):
ATATATAAAAAATAT
Found at i:12891600 original size:33 final size:31
Alignment explanation
Indices: 12891558--12891659 Score: 82
Period size: 33 Copynumber: 3.1 Consensus size: 31
12891548 ATTTAATGGT
12891558 TTTATTTAAATATTTAAAATATAATTTATATA
1 TTTA-TTAAATATTTAAAATATAATTTATATA
* *
12891590 TTCTAATTAAAT-TTTATAA-ATAATTAATATTTA
1 TT-T-ATTAAATATTTAAAATATAATT--TATATA
*
12891623 TTTATTAAAAATATTTAAAATTTATATTTCATATA
1 TTTATT--AAATATTTAAAATATA-ATTT-ATATA
12891658 TT
1 TT
12891660 AAAATATTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
31 9 0.16
32 9 0.16
33 18 0.33
34 8 0.15
35 8 0.15
36 3 0.05
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (31 bp):
TTTATTAAATATTTAAAATATAATTTATATA
Found at i:12891651 original size:30 final size:30
Alignment explanation
Indices: 12891611--12891667 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
12891601 TTTTATAAAT
*
12891611 AATTAATATTT-ATTTATTAAAAATATTTAA
1 AATTAATATTTCATATATT-AAAATATTTAA
*
12891641 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
12891668 AACAACAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:12891883 original size:13 final size:13
Alignment explanation
Indices: 12891852--12891893 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
12891842 AAACTTCTCA
*
12891852 AAAACACTTTTCC
1 AAAACACTTTTTC
* *
12891865 AGAACACTTTTTT
1 AAAACACTTTTTC
12891878 AAAACA-TTTTTC
1 AAAACACTTTTTC
12891890 AAAA
1 AAAA
12891894 GCATTACTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (13 bp):
AAAACACTTTTTC
Found at i:12893392 original size:48 final size:48
Alignment explanation
Indices: 12893319--12893464 Score: 197
Period size: 48 Copynumber: 3.0 Consensus size: 48
12893309 GTCATTAAGG
*
12893319 GATTCATTGATTTGGCTTTGGGCCATGATATTGGCACTTCAGGTGCGA
1 GATTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCAGGTGCGA
* * *
12893367 GCTTCATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCAA
1 GATTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCAGGTGCGA
* * *
12893415 GATAT-GTTGAGTTGGCTTCGGGTCATGATATTGGCACTT-AGTGTGCGA
1 GAT-TCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCAG-GTGCGA
12893463 GA
1 GA
12893465 CTCCTGAGTA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 2 0.02
48 83 0.97
49 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.34
Consensus pattern (48 bp):
GATTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCAGGTGCGA
Found at i:12901710 original size:14 final size:14
Alignment explanation
Indices: 12901691--12901736 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
12901681 CTTAAAAACG
12901691 TAATAAAAGAAAAA
1 TAATAAAAGAAAAA
12901705 TAATAAAA-AAAAGA
1 TAATAAAAGAAAA-A
*
12901719 TAA-AATAAGATAAA
1 TAATAA-AAGAAAAA
12901733 TAAT
1 TAAT
12901737 CGAATTTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
13 6 0.22
14 18 0.67
15 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.20
Consensus pattern (14 bp):
TAATAAAAGAAAAA
Found at i:12905048 original size:9 final size:9
Alignment explanation
Indices: 12905034--12905062 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
12905024 TCTCTTTGCT
12905034 TTAGTTTAA
1 TTAGTTTAA
12905043 TTAG-TTAA
1 TTAGTTTAA
12905051 TTAGTTTAA
1 TTAGTTTAA
12905060 TTA
1 TTA
12905063 ACAACCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (9 bp):
TTAGTTTAA
Found at i:12920728 original size:13 final size:13
Alignment explanation
Indices: 12920710--12920734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12920700 GGGAGGCGAC
12920710 ACGGCCGTGTGAT
1 ACGGCCGTGTGAT
12920723 ACGGCCGTGTGA
1 ACGGCCGTGTGA
12920735 AAATAGAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACGGCCGTGTGAT
Found at i:12921215 original size:18 final size:18
Alignment explanation
Indices: 12921192--12921238 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
12921182 TCATCTTTTA
*
12921192 TTTATTTTTATTTTTATC
1 TTTATTTTTATTTTTAAC
* *
12921210 TTTATTTATCTTTTTAAC
1 TTTATTTTTATTTTTAAC
12921228 -TTACTTTTTAT
1 TTTA-TTTTTAT
12921239 CCTATTTCTC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTTATTTTTAAC
Found at i:12924817 original size:19 final size:19
Alignment explanation
Indices: 12924790--12924828 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
12924780 GATTTCTAAT
* *
12924790 GATAGAAAATGTATGTTTG
1 GATAAAAAATGCATGTTTG
12924809 GATAAAAAATGCATGTTTG
1 GATAAAAAATGCATGTTTG
12924828 G
1 G
12924829 TGTTTGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.33
Consensus pattern (19 bp):
GATAAAAAATGCATGTTTG
Found at i:12937233 original size:23 final size:24
Alignment explanation
Indices: 12937173--12937260 Score: 87
Period size: 23 Copynumber: 3.9 Consensus size: 24
12937163 AGACTCATGA
12937173 CAGCTC-ATAAGAGCTTACCGTTT
1 CAGCTCAATAAGAGCTTACCGTTT
* **
12937196 CAGCTC-TTTGGAGCTTACCGTTT
1 CAGCTCAATAAGAGCTTACCGTTT
* **
12937219 TAGCTCAATAA-AGCTTAATG-TT
1 CAGCTCAATAAGAGCTTACCGTTT
12937241 CAGCTCAA-AAGAGCTTACCG
1 CAGCTCAATAAGAGCTTACCG
12937261 ACCATGACTC
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
21 2 0.04
22 16 0.31
23 32 0.63
24 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (24 bp):
CAGCTCAATAAGAGCTTACCGTTT
Found at i:12944205 original size:23 final size:23
Alignment explanation
Indices: 12944177--12944292 Score: 101
Period size: 22 Copynumber: 5.1 Consensus size: 23
12944167 TTTTCAGCTC
* *
12944177 CCGTTTCAGCTTATTGGAGCTTA
1 CCGTTTCAGCTCATTAGAGCTTA
*
12944200 CCGTTTTAGCTCATTAGAGCTTA
1 CCGTTTCAGCTCATTAGAGCTTA
* *
12944223 CCATTTCAGCTCAATAGAGCTTA
1 CCGTTTCAGCTCATTAGAGCTTA
** **
12944246 ATG-TTCAGCTCAAAAGAGCTTA
1 CCGTTTCAGCTCATTAGAGCTTA
** **
12944268 ATG-TTCAGCTCAAAAGAGCTTA
1 CCGTTTCAGCTCATTAGAGCTTA
12944290 CCG
1 CCG
12944293 ACCATGACTT
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
22 41 0.51
23 40 0.49
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (23 bp):
CCGTTTCAGCTCATTAGAGCTTA
Found at i:12944255 original size:22 final size:22
Alignment explanation
Indices: 12944227--12944289 Score: 117
Period size: 22 Copynumber: 2.9 Consensus size: 22
12944217 AGCTTACCAT
*
12944227 TTCAGCTCAATAGAGCTTAATG
1 TTCAGCTCAAAAGAGCTTAATG
12944249 TTCAGCTCAAAAGAGCTTAATG
1 TTCAGCTCAAAAGAGCTTAATG
12944271 TTCAGCTCAAAAGAGCTTA
1 TTCAGCTCAAAAGAGCTTA
12944290 CCGACCATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (22 bp):
TTCAGCTCAAAAGAGCTTAATG
Found at i:12946305 original size:56 final size:54
Alignment explanation
Indices: 12946217--12946365 Score: 181
Period size: 56 Copynumber: 2.7 Consensus size: 54
12946207 CATGATACAT
* * *
12946217 GCTAGGTCTGGGAGCTTGTGTAGCCCTGTTGAGAGGCATGTAATTATGTGGCACAC
1 GCTAGGTCTGGGAGCTTATGTAGCCCTGTTGAGAGGCATG--ATTATGAGACACAC
* * ** *
12946273 GCTAGGTCTGGGAGCTTATGTAGCCCTATTGAGAGGCATGGTTATGAGATGCAT
1 GCTAGGTCTGGGAGCTTATGTAGCCCTGTTGAGAGGCATGATTATGAGACACAC
*
12946327 GCTAGGTCTGGGTGCTCTTATGTAGCCCTGTTGAGAGGC
1 GCTAGGTCTGGGAG--CTTATGTAGCCCTGTTGAGAGGC
12946366 GTGCTATGTT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
54 21 0.26
56 60 0.74
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.30
Consensus pattern (54 bp):
GCTAGGTCTGGGAGCTTATGTAGCCCTGTTGAGAGGCATGATTATGAGACACAC
Found at i:12948686 original size:46 final size:46
Alignment explanation
Indices: 12948636--12948811 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
12948626 TGGTTGAGCA
*
12948636 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
12948682 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
12948727 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
12948775 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
12948812 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:12948792 original size:93 final size:93
Alignment explanation
Indices: 12948633--12948804 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
12948623 GGATGGTTGA
* * * *
12948633 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
12948698 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
12948726 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
12948791 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
12948805 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:12953809 original size:55 final size:55
Alignment explanation
Indices: 12953672--12953814 Score: 153
Period size: 55 Copynumber: 2.6 Consensus size: 55
12953662 TTCGACGTGG
* * * * **
12953672 CCGTGGCCGAACATGCCAAAACAATACGGGCGTTCGACACACCCGTGCCTTGAAA
1 CCGTGGCTGAACCTGCCAAAACAACACGGGCGTACGACACACCCGTGCCAAGAAA
* * ** * *
12953727 CCGTGGCTAAACCTG-TAAAATTGACACGGGCGTACGACACGCTCGTGCCAAGAAA
1 CCGTGGCTGAACCTGCCAAAA-CAACACGGGCGTACGACACACCCGTGCCAAGAAA
*
12953782 CCGTGGGTGAACCTGCCAAAACAACACGGGCGT
1 CCGTGGCTGAACCTGCCAAAACAACACGGGCGT
12953815 GGACTATCAT
Statistics
Matches: 69, Mismatches: 17, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
54 4 0.06
55 61 0.88
56 4 0.06
ACGTcount: A:0.29, C:0.30, G:0.26, T:0.15
Consensus pattern (55 bp):
CCGTGGCTGAACCTGCCAAAACAACACGGGCGTACGACACACCCGTGCCAAGAAA
Found at i:12964247 original size:11 final size:11
Alignment explanation
Indices: 12964231--12964264 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
12964221 ATTTGAAATG
12964231 GAAAAATATAT
1 GAAAAATATAT
*
12964242 GAAAAATGTAT
1 GAAAAATATAT
*
12964253 GAGAAATATAT
1 GAAAAATATAT
12964264 G
1 G
12964265 TTGATTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (11 bp):
GAAAAATATAT
Found at i:12993353 original size:39 final size:39
Alignment explanation
Indices: 12993294--12993486 Score: 227
Period size: 39 Copynumber: 5.0 Consensus size: 39
12993284 CAGTGATGTT
12993294 TATCCGGACTT-AGAGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTA
*
12993333 TATCTGGACTT-AGAGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTA
*
12993372 TATCCGGACTTAAGGTTCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
12993411 TAAT-CGGACTTAAGGTCTGCAGGCTACGTGCTGGAAATA
1 T-ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
12993450 TGTCCGGGC-TAAAGTCCCGCA-GCT-TGTGCTGGTAATT
1 TATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG-AATT
12993487 GGTTTCAGGT
Statistics
Matches: 136, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
37 7 0.05
38 12 0.09
39 113 0.83
40 4 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:12994808 original size:25 final size:27
Alignment explanation
Indices: 12994771--12994823 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
12994761 TCAAACATGC
12994771 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
12994797 ATTTTGGT-AATTTACCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
12994823 A
1 A
12994824 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:12996342 original size:32 final size:32
Alignment explanation
Indices: 12996305--12996369 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
12996295 AATGCTTACC
12996305 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
12996337 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
12996369 A
1 A
12996370 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:13004519 original size:39 final size:39
Alignment explanation
Indices: 13004465--13004617 Score: 211
Period size: 39 Copynumber: 3.9 Consensus size: 39
13004455 CAGTGATGTT
13004465 TATCCGGACTT-AGAGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTA
13004504 TATCCGGACTT-AGAGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTA
* **
13004543 TATCTGGACTTAAGGTCCGCAATCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * **
13004582 TAACCGAACTTAAGGTCCGCAGGCTGCGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
13004618 AGATGTCCGG
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
39 101 0.98
40 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:13012727 original size:27 final size:27
Alignment explanation
Indices: 13012697--13012837 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
13012687 GTGACGAAGT
*
13012697 CACCAGATACAGATATTGTGGCAGAGG
1 CACCAGATACAGATATTGTGGCAGAGC
*
13012724 CACCAGA-ACAGATATATGTGGCAGGGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
13012751 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
13012778 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
13012805 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
13012832 CACCAG
1 CACCAG
13012838 GACGCTTCTT
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 10 0.10
27 85 0.86
28 4 0.04
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:13012838 original size:54 final size:54
Alignment explanation
Indices: 13012697--13012840 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
13012687 GTGACGAAGT
* * * *
13012697 CACCAGATACAGAT-ATTGTGGCAGAGGCACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
13012751 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
13012805 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
13012841 GCTTCTTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:13019599 original size:27 final size:27
Alignment explanation
Indices: 13019551--13019709 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
13019541 GCGAGGCTGC
* * *
13019551 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
13019578 CAGATATTGTGGCAGAGGCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
13019604 CAGATATATGTGGCAGGGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
13019631 TAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
13019658 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
13019685 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
13019710 GACGCTTCTT
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 10 0.09
27 98 0.88
28 4 0.04
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:13019710 original size:54 final size:54
Alignment explanation
Indices: 13019551--13019712 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
13019541 GCGAGGCTGC
* * * * * *
13019551 CAGATAT-TGTGACAAAGTCACCAGATACAGAT-ATTGTGGCAGAGGCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
* *
13019604 CAGATATATGTGGCAGGGCCACCAGATTAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
13019658 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
13019712 C
1 C
13019713 GCTTCTTCCA
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 11 0.11
54 86 0.89
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:13029584 original size:40 final size:40
Alignment explanation
Indices: 13029538--13029722 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
13029528 CTTGCGCAAG
* *
13029538 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCAAAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAAAAAT
* * * *
13029578 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAAAAAT
* * **
13029618 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCAAAAAT
* * *
13029658 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA-
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCA-AAAAT
*
13029699 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
13029723 CATTCGAATA
Statistics
Matches: 118, Mismatches: 23, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.75
41 26 0.22
42 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAAAAAT
Found at i:13037650 original size:40 final size:40
Alignment explanation
Indices: 13037604--13037788 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
13037594 CTTGCGCAAG
* * *
13037604 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
13037644 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
13037684 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
13037724 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
13037765 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
13037789 CATTCGAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 91 0.75
41 29 0.24
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:13041614 original size:81 final size:81
Alignment explanation
Indices: 13041479--13041640 Score: 306
Period size: 81 Copynumber: 2.0 Consensus size: 81
13041469 GGGTAAGGAA
*
13041479 TTACTTCAAGAAAGCCGATTGATCCATCTCAGAAGCCGGATTCATCATCAAGACTGAAGATCCCT
1 TTACTCCAAGAAAGCCGATTGATCCATCTCAGAAGCCGGATTCATCATCAAGACTGAAGATCCCT
13041544 CCTCAATTTCCCCTTC
66 CCTCAATTTCCCCTTC
*
13041560 TTACTCCAAGAAAGCCGATTGATCCGTCTCAGAAGCCGGATTCATCATCAAGACTGAAGATCCCT
1 TTACTCCAAGAAAGCCGATTGATCCATCTCAGAAGCCGGATTCATCATCAAGACTGAAGATCCCT
13041625 CCTCAATTTCCCCTTC
66 CCTCAATTTCCCCTTC
13041641 AGGAGTTTTG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (81 bp):
TTACTCCAAGAAAGCCGATTGATCCATCTCAGAAGCCGGATTCATCATCAAGACTGAAGATCCCT
CCTCAATTTCCCCTTC
Found at i:13042537 original size:5 final size:5
Alignment explanation
Indices: 13042527--13042557 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
13042517 TTGCAAAGTA
13042527 ATTTT ATTTT ATTTT ATTTT ATTATT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT
13042558 TTTATTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:13042556 original size:11 final size:11
Alignment explanation
Indices: 13042530--13042569 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
13042520 CAAAGTAATT
13042530 TTATTTTATT-
1 TTATTTTATTA
13042540 TTATTTTATTA
1 TTATTTTATTA
*
13042551 TTATTTTTTTA
1 TTATTTTATTA
*
13042562 TTAATTTA
1 TTATTTTA
13042570 CTTTGTCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 10 0.38
11 16 0.62
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:13048729 original size:17 final size:17
Alignment explanation
Indices: 13048703--13048736 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13048693 TTTAGGATAA
* *
13048703 ATTTTGATTGATTTATG
1 ATTTTAATTGATATATG
13048720 ATTTTAATTGATATATG
1 ATTTTAATTGATATATG
13048737 TTGAATTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (17 bp):
ATTTTAATTGATATATG
Found at i:13052104 original size:21 final size:22
Alignment explanation
Indices: 13052079--13052122 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
13052069 GTTTAAGAAT
13052079 TTTTTA-TTATTATCATT-TTTA
1 TTTTTACTT-TTATCATTATTTA
*
13052100 TTTTTACTTTTATCTTTATTTA
1 TTTTTACTTTTATCATTATTTA
13052122 T
1 T
13052123 ATTCTTTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTTACTTTTATCATTATTTA
Found at i:13054599 original size:14 final size:15
Alignment explanation
Indices: 13054580--13054609 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
13054570 ATATTTGACT
13054580 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
13054594 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
13054609 T
1 T
13054610 TTTAATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:13060438 original size:20 final size:20
Alignment explanation
Indices: 13060405--13060445 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
13060395 AGCACATGTA
13060405 TTCATAAAAATTCAAAACTT
1 TTCATAAAAATTCAAAACTT
* * *
13060425 TTCATCAAATTTCACAACTT
1 TTCATAAAAATTCAAAACTT
13060445 T
1 T
13060446 ACATTTTAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (20 bp):
TTCATAAAAATTCAAAACTT
Found at i:13068392 original size:13 final size:13
Alignment explanation
Indices: 13068376--13068409 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
13068366 TTACATGGGC
*
13068376 ACACGGGCTAGTG
1 ACACGGGCTAGTA
13068389 ACACGGGCTAGTA
1 ACACGGGCTAGTA
13068402 ACACGGGC
1 ACACGGGC
13068410 ATGTGTGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.35, T:0.12
Consensus pattern (13 bp):
ACACGGGCTAGTA
Found at i:13072410 original size:50 final size:50
Alignment explanation
Indices: 13072292--13072476 Score: 230
Period size: 50 Copynumber: 3.7 Consensus size: 50
13072282 CTAGTATGCA
*
13072292 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * *
13072341 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * * * *
13072391 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAGT-GGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TTA-TCCGGTACACG
*
13072442 TAGTAGCCTGCACTTAGTACTACACATGCGACCTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTA
13072477 GCTACATATA
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 31 0.26
50 47 0.40
51 38 0.32
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
Found at i:13072494 original size:101 final size:99
Alignment explanation
Indices: 13072292--13072476 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 99
13072282 CTAGTATGCA
* *
13072292 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
13072357 GTACTACACACGTGACCTAACTATCTGATACACG
66 GTACTACACACGCGACCTAACTATCTGATACACG
* * * *
13072391 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAGT-GGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTA-TCCGGTACACATAGTAGCCTGCAC
*
13072455 TTAGTACTACACATGCGACCTA
63 TTAGTACTACACACGCGACCTA
13072477 GCTACATATA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.56
102 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACTATCTGATACACG
Found at i:13073315 original size:30 final size:30
Alignment explanation
Indices: 13073279--13073339 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
13073269 CCCTTAACTC
*
13073279 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATGTTGCCCCT
* * * *
13073309 AAACTTTTGCATATTTACACTGTTGCCCCT
1 AAACTTTGGAAAATTTACAATGTTGCCCCT
13073339 A
1 A
13073340 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATGTTGCCCCT
Found at i:13078457 original size:28 final size:28
Alignment explanation
Indices: 13078417--13078473 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
13078407 AGAAGAAGAG
13078417 TTGTTCACCAAATTGTAGGAGTTACATA
1 TTGTTCACCAAATTGTAGGAGTTACATA
13078445 TTGTTCACCAAATTGTAGGAGTTACATA
1 TTGTTCACCAAATTGTAGGAGTTACATA
13078473 T
1 T
13078474 GATGTAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (28 bp):
TTGTTCACCAAATTGTAGGAGTTACATA
Found at i:13078855 original size:83 final size:83
Alignment explanation
Indices: 13078716--13078883 Score: 336
Period size: 83 Copynumber: 2.0 Consensus size: 83
13078706 TATTTTATTG
13078716 TTGTAGATATATTATTGCTGCAAAGACTGATACACTCTCATTGTGATCAATCCTTGAGAAGGACA
1 TTGTAGATATATTATTGCTGCAAAGACTGATACACTCTCATTGTGATCAATCCTTGAGAAGGACA
13078781 AATTGAATGGTTTAAACT
66 AATTGAATGGTTTAAACT
13078799 TTGTAGATATATTATTGCTGCAAAGACTGATACACTCTCATTGTGATCAATCCTTGAGAAGGACA
1 TTGTAGATATATTATTGCTGCAAAGACTGATACACTCTCATTGTGATCAATCCTTGAGAAGGACA
13078864 AATTGAATGGTTTAAACT
66 AATTGAATGGTTTAAACT
13078882 TT
1 TT
13078884 CTTGACTGGT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (83 bp):
TTGTAGATATATTATTGCTGCAAAGACTGATACACTCTCATTGTGATCAATCCTTGAGAAGGACA
AATTGAATGGTTTAAACT
Found at i:13095791 original size:17 final size:16
Alignment explanation
Indices: 13095734--13095794 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
13095724 AATTCCTAAA
13095734 TCCCCAAATTTGAAACT
1 TCCCCAAATTTGAAA-T
* * *
13095751 TCTTCCCAACTTTTAAAA
1 TC--CCCAAATTTGAAAT
13095769 TCCCCAAATTGTGAAAT
1 TCCCCAAATT-TGAAAT
13095786 TCCCCAAAT
1 TCCCCAAAT
13095795 CCATAACCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
16 7 0.20
17 15 0.43
18 2 0.06
19 11 0.31
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.31
Consensus pattern (16 bp):
TCCCCAAATTTGAAAT
Found at i:13101300 original size:50 final size:51
Alignment explanation
Indices: 13101216--13101320 Score: 176
Period size: 50 Copynumber: 2.1 Consensus size: 51
13101206 TACGTGCAGT
* *
13101216 AGCAACATTATCCAATCCATCTGATATTGCAAAATCACCACCATATTCATC
1 AGCAACATTATCCAATCCATCTGATATTGAAAAATAACCACCATATTCATC
*
13101267 AGCAACATTATCC-ATCCATCTGATGTTGAAAAATAACCACCATATTCATC
1 AGCAACATTATCCAATCCATCTGATATTGAAAAATAACCACCATATTCATC
13101317 AGCA
1 AGCA
13101321 GCAACTTCAC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
50 38 0.75
51 13 0.25
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.27
Consensus pattern (51 bp):
AGCAACATTATCCAATCCATCTGATATTGAAAAATAACCACCATATTCATC
Found at i:13105406 original size:28 final size:28
Alignment explanation
Indices: 13105369--13105457 Score: 162
Period size: 28 Copynumber: 3.2 Consensus size: 28
13105359 CTCCGTAGAG
*
13105369 GAAGT-GTGAGTTTTCTATTCTGGTGGA
1 GAAGTCGTGAGTTTTCTATTCTAGTGGA
13105396 GAAGTCGTGAGTTTTCTATTCTAGTGGA
1 GAAGTCGTGAGTTTTCTATTCTAGTGGA
13105424 GAAGTCGTGAGTTTTCTATTCTAGTGGA
1 GAAGTCGTGAGTTTTCTATTCTAGTGGA
13105452 GAAGTC
1 GAAGTC
13105458 AAAGATCGCC
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
27 5 0.08
28 55 0.92
ACGTcount: A:0.21, C:0.10, G:0.30, T:0.38
Consensus pattern (28 bp):
GAAGTCGTGAGTTTTCTATTCTAGTGGA
Done.