Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 48 of 349
Found at i:13711187 original size:49 final size:50
Alignment explanation
Indices: 13711120--13711341 Score: 245
Period size: 49 Copynumber: 4.5 Consensus size: 50
13711110 GGTCATGTGC
* *
13711120 GTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATT-GGTCGCATGT
1 GTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTAGGTCACATGT
* * * * * * * *
13711169 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATTACGTGT
1 GTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAA-TTAGGTCACATGT
* * **
13711220 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGA-GT
1 GTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTAGGTCAC-ATGT
*
13711270 GTAGTACTAAGTGCAGGCTACTACGTGTAAT-GGATAATT-GGTCGCATGT
1 GTAGTACTAAGTGCAGGCTACTACGTGT-ATCGGATAATTAGGTCACATGT
*
13711319 GTAGTACTAAGTTCAGGCTACTA
1 GTAGTACTAAGTGCAGGCTACTA
13711342 TGCGTACCAG
Statistics
Matches: 144, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
48 1 0.01
49 61 0.42
50 42 0.29
51 40 0.28
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
GTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTAGGTCACATGT
Found at i:13711306 original size:101 final size:98
Alignment explanation
Indices: 13711120--13711355 Score: 267
Period size: 101 Copynumber: 2.4 Consensus size: 98
13711110 GGTCATGTGC
* * * *
13711120 GTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAG
1 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAATTGGTCACATGTGTAGTACTAAGTGCAG
* * * *
13711185 GCTACTATGCGTACCCGATAACTTCGATTACGTGT
66 GCTACTACGCGTAACCGATAA-TT-GATCACATGT
**
13711220 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGA-GTGTAGTACTAAGTGC
1 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAATT-GGTCAC-ATGTGTAGTACTAAGTGC
* ** * *
13711284 AGGCTACTACGTGTAATGGATAATTGGTCGCATGT
64 AGGCTACTACGCGTAACCGATAATTGATCACATGT
* * *
13711319 GTAGTACTAAGTTCAGGCTACTATGCGTACCAGATAA
1 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAA
13711356 CTTTGGCTAC
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
99 38 0.33
100 36 0.32
101 39 0.34
102 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (98 bp):
GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAATTGGTCACATGTGTAGTACTAAGTGCAG
GCTACTACGCGTAACCGATAATTGATCACATGT
Found at i:13711353 original size:99 final size:101
Alignment explanation
Indices: 13711167--13711353 Score: 252
Period size: 99 Copynumber: 1.9 Consensus size: 101
13711157 TTGGTCGCAT
* * * *
13711167 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATTACGTGTGTAGTACTAAGT
1 GTGTAGTACTAAGTGCAGGCTACTACGCGTAACCGATAACTTCGATCACATGTGTAGTACTAAGT
* *
13711232 GCAGGCTACTATGTGTATCAGATGGTTAGGTCACGA
66 GCAGGCTACTATGCGTACCAGATGGTTAGGTCACGA
* ** * *
13711268 GTGTAGTACTAAGTGCAGGCTACTACGTGTAATGGATAA-TT-GGTCGCATGTGTAGTACTAAGT
1 GTGTAGTACTAAGTGCAGGCTACTACGCGTAACCGATAACTTCGATCACATGTGTAGTACTAAGT
*
13711331 TCAGGCTACTATGCGTACCAGAT
66 GCAGGCTACTATGCGTACCAGAT
13711354 AACTTTGGCT
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 38 0.51
100 2 0.03
101 34 0.46
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (101 bp):
GTGTAGTACTAAGTGCAGGCTACTACGCGTAACCGATAACTTCGATCACATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCAGATGGTTAGGTCACGA
Found at i:13712958 original size:42 final size:41
Alignment explanation
Indices: 13712909--13713136 Score: 205
Period size: 42 Copynumber: 5.5 Consensus size: 41
13712899 AGGGAATAAT
* * *
13712909 ATAATAGTAACAATAACAATAATGATATTAATAAAAATAAAA
1 ATAATAGTAATAATAATAATAATAATA-TAATAAAAATAAAA
* * * **
13712951 ATAATAGTAATAATAATAACAGTAATAAAAATAAAAATAATT
1 ATAATAGTAATAATAATAATAATAAT-ATAATAAAAATAAAA
*
13712993 GTAATAGTAATAATAATGAAAATAATAATAGTAATAAAAATAAAA
1 ATAATAGTAATAATAAT---AATAATAATA-TAATAAAAATAAAA
* * *
13713038 ATAGTGGTAATAATAATAATAAT-A-ATAATGAAAATAAAA
1 ATAATAGTAATAATAATAATAATAATATAATAAAAATAAAA
* * * *
13713077 ATAATAGTAGTAATAATAATAATAAT-GAATATAAATAATA
1 ATAATAGTAATAATAATAATAATAATATAATAAAAATAAAA
* *
13713117 GTAAAAG-AA-AATAATAATAA
1 ATAATAGTAATAATAATAATAA
13713137 AATTAACTAA
Statistics
Matches: 151, Mismatches: 28, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
38 11 0.07
39 34 0.23
40 17 0.11
41 1 0.01
42 54 0.36
43 1 0.01
44 1 0.01
45 32 0.21
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.28
Consensus pattern (41 bp):
ATAATAGTAATAATAATAATAATAATATAATAAAAATAAAA
Found at i:13712964 original size:3 final size:3
Alignment explanation
Indices: 13712903--13713157 Score: 157
Period size: 3 Copynumber: 85.7 Consensus size: 3
13712893 ATAAAAAGGG
* * * * * * *
13712903 AAT AAT -AT AAT AGT AAC AAT AAC AAT AAT GAT ATT AAT AAA AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * **
13712950 AAT AAT AGT AAT AAT AAT AAC AGT AAT AAA AAT AAA AAT AAT TGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
13712998 AGT AAT AAT AAT GAA- AAT AAT AAT AGT AAT AAA AAT AAA AAT AGT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * *
13713043 GGT AAT AAT AAT AAT AAT AAT AAT GAA- AAT AAA AAT AAT AGT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
* *
13713088 AAT AAT AAT AAT AAT GAAT -AT AAAT AAT AGT AA- AAG AA- AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
*
13713132 AAT AA- AATT AACT AAT -TT AAT AAT AA
1 AAT AAT AA-T AA-T AAT AAT AAT AAT AA
13713158 AGTAGCTAAA
Statistics
Matches: 190, Mismatches: 49, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
2 15 0.08
3 161 0.85
4 14 0.07
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:13713007 original size:45 final size:45
Alignment explanation
Indices: 13712958--13713107 Score: 176
Period size: 45 Copynumber: 3.3 Consensus size: 45
13712948 AAAATAATAG
* * * *
13712958 TAATAATAATAACAGTAATAAAAATAAAAATAATTGTAATAGTAA
1 TAATAATAATAATAATAATAAAAATAAAAATAATAGTAGTAGTAA
** * * *
13713003 TAATAATGAA-AATAATAATAGTAATAAAAATAAAAATAGTGGTAA
1 TAATAAT-AATAATAATAATAAAAATAAAAATAATAGTAGTAGTAA
* *
13713048 TAATAATAATAATAATAATGAAAATAAAAATAATAGTAGTAATAA
1 TAATAATAATAATAATAATAAAAATAAAAATAATAGTAGTAGTAA
13713093 TAATAATAATGAATA
1 TAATAATAAT-AATA
13713108 TAAATAATAG
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
44 2 0.02
45 78 0.91
46 6 0.07
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.29
Consensus pattern (45 bp):
TAATAATAATAATAATAATAAAAATAAAAATAATAGTAGTAGTAA
Found at i:13716151 original size:21 final size:23
Alignment explanation
Indices: 13716118--13716178 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 23
13716108 AATATCTTTA
*
13716118 AAAATAGTTTAAAAAT-TATATTT
1 AAAATA-TTTAAAAATATACATTT
13716141 AAAAT-TTT-AAAATATACATTT
1 AAAATATTTAAAAATATACATTT
13716162 AAAATATTATAAAAATA
1 AAAATATT-TAAAAATA
13716179 ATAAATTTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 5 0.15
21 14 0.42
22 2 0.06
23 6 0.18
24 6 0.18
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
AAAATATTTAAAAATATACATTT
Found at i:13716163 original size:34 final size:34
Alignment explanation
Indices: 13716060--13716172 Score: 108
Period size: 34 Copynumber: 3.4 Consensus size: 34
13716050 CTTCTCCAAA
* *
13716060 TAAAATATTATTTTTATAATTTT-AAATATAATT
1 TAAAATATTATATTTAAAATTTTAAAATATAATT
** * * *
13716093 TAAAA-AAGACATTTGAATATCTTTAAAA-ATAGTT
1 TAAAATATTATATTT-AAAAT-TTTAAAATATAATT
13716127 TAAAA-ATTATATTTAAAATTTTAAAATATACATT
1 TAAAATATTATATTTAAAATTTTAAAATATA-ATT
13716161 TAAAATATTATA
1 TAAAATATTATA
13716173 AAAATAATAA
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
32 12 0.19
33 15 0.24
34 26 0.42
35 9 0.15
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (34 bp):
TAAAATATTATATTTAAAATTTTAAAATATAATT
Found at i:13716259 original size:22 final size:23
Alignment explanation
Indices: 13716220--13716277 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
13716210 ATATATTTTA
* *
13716220 AATATTTTATAATATTAAAAAAT
1 AATATTTTAAAATATTAAAAAAC
*
13716243 AATA-TTTAAAATTTTAAAAAAC
1 AATATTTTAAAATATTAAAAAAC
13716265 AATAATTTTAAAA
1 AAT-ATTTTAAAA
13716278 AATATATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 18 0.60
23 5 0.17
24 7 0.23
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
AATATTTTAAAATATTAAAAAAC
Found at i:13716314 original size:37 final size:36
Alignment explanation
Indices: 13716228--13716314 Score: 106
Period size: 38 Copynumber: 2.4 Consensus size: 36
13716218 TAAATATTTT
13716228 ATAATA-TTAAAAAATAATATTTAAAATTTTAAAAA
1 ATAATATTTAAAAAATAATATTTAAAATTTTAAAAA
* *
13716263 ACAATAATTTTAAAAAAT-ATATTTAAAATTTTTAATAA
1 ATAAT-A-TTTAAAAAATAATATTTAAAA-TTTTAAAAA
13716301 ATAATATTATAAAA
1 ATAATATT-TAAAA
13716315 CATTTAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
35 4 0.09
36 3 0.07
37 16 0.36
38 21 0.48
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (36 bp):
ATAATATTTAAAAAATAATATTTAAAATTTTAAAAA
Found at i:13716332 original size:13 final size:13
Alignment explanation
Indices: 13716314--13716339 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13716304 ATATTATAAA
13716314 ACATTTAAAATAT
1 ACATTTAAAATAT
13716327 ACATTTAAAATAT
1 ACATTTAAAATAT
13716340 TATAAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:13716451 original size:35 final size:34
Alignment explanation
Indices: 13716404--13716490 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 34
13716394 TTGAAAAAGT
* *
13716404 AAATAAAGAAAAACAAATAAAAAACG-AAAAAGGAC
1 AAATAAATAAAAA-AAAT-AAAAACGAAAAAAGGAA
* * *
13716439 AAATAAATAAAAAATCATAAAAATGAAAAAATGAA
1 AAATAAATAAAAAA-AATAAAAACGAAAAAAGGAA
13716474 AAATAAATAAAAAAAAT
1 AAATAAATAAAAAAAAT
13716491 CAGGAAAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
34 9 0.20
35 35 0.80
ACGTcount: A:0.76, C:0.05, G:0.07, T:0.13
Consensus pattern (34 bp):
AAATAAATAAAAAAAATAAAAACGAAAAAAGGAA
Found at i:13717770 original size:20 final size:20
Alignment explanation
Indices: 13717745--13717804 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
13717735 TTTTAAAATT
13717745 TAAAAATTATTAAAAAATCA
1 TAAAAATTATTAAAAAATCA
* *
13717765 TAAAAATTA-AAAAAAAGTTA
1 TAAAAATTATTAAAAAA-TCA
*
13717785 TAAAATTTTTATTAAAAAAT
1 TAAAA--ATTATTAAAAAAT
13717805 TAACAAGACC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.19
20 16 0.50
22 4 0.12
23 6 0.19
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAAAATTATTAAAAAATCA
Found at i:13719183 original size:23 final size:22
Alignment explanation
Indices: 13719156--13719223 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
13719146 AGAAAAAGAC
13719156 GGATGAACAATGAAGATTCTCT
1 GGATGAACAATGAAGATTCTCT
*
13719178 GCGATGAACAAT-AAAATTCTCT
1 G-GATGAACAATGAAGATTCTCT
* *
13719200 GGCATGAACAAAGAAGATTTTCT
1 GG-ATGAACAATGAAGATTCTCT
13719223 G
1 G
13719224 TTGAAAGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 19 0.49
23 19 0.49
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (22 bp):
GGATGAACAATGAAGATTCTCT
Found at i:13720065 original size:22 final size:22
Alignment explanation
Indices: 13720040--13720082 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
13720030 CAATTATGTG
* *
13720040 ATTTATATTTATAAAAATATAT
1 ATTTAAATTAATAAAAATATAT
*
13720062 ATTTAAATTAATGAAAATATA
1 ATTTAAATTAATAAAAATATA
13720083 AATATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTTAAATTAATAAAAATATAT
Found at i:13724105 original size:20 final size:17
Alignment explanation
Indices: 13724067--13724110 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 17
13724057 AAACCCTAAT
13724067 TTTCCCTTTTCTTTTTC
1 TTTCCCTTTTCTTTTTC
13724084 TTTCCCTTCTTCCTTCTTTC
1 TTTCCCTT-TT-CTT-TTTC
13724104 TTTCCCT
1 TTTCCCT
13724111 GCTCATTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.33
18 2 0.08
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTCCCTTTTCTTTTTC
Found at i:13724237 original size:16 final size:17
Alignment explanation
Indices: 13724184--13724237 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 17
13724174 ATTAATATAT
* *
13724184 TATAATTATATAATTTA
1 TATAATTATTTACTTTA
* *
13724201 -AT-ATAATTTACTTTT
1 TATAATTATTTACTTTA
13724216 TATAATTATTTAC-TTA
1 TATAATTATTTACTTTA
13724232 TATAAT
1 TATAAT
13724238 AAGTAAATTC
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 9 0.31
16 12 0.41
17 8 0.28
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (17 bp):
TATAATTATTTACTTTA
Found at i:13727211 original size:15 final size:15
Alignment explanation
Indices: 13727191--13727222 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13727181 CATTTCACTA
*
13727191 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
13727206 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
13727221 TT
1 TT
13727223 TTCATGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:13741921 original size:12 final size:12
Alignment explanation
Indices: 13741904--13741951 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
13741894 TATTCATGAG
13741904 AAATTATTTAAT
1 AAATTATTTAAT
***
13741916 AAATTAAAAAAT
1 AAATTATTTAAT
*
13741928 AAATTATTTAAC
1 AAATTATTTAAT
13741940 AAATATATTTAA
1 AAAT-TATTTAA
13741952 ATATTGACGA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
12 21 0.75
13 7 0.25
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATTATTTAAT
Found at i:13746345 original size:17 final size:17
Alignment explanation
Indices: 13746325--13746360 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
13746315 AATTCATTCA
13746325 TAACCATGTTTCAAGTT
1 TAACCATGTTTCAAGTT
13746342 TAACCATGTTTCAAGTT
1 TAACCATGTTTCAAGTT
13746359 TA
1 TA
13746361 CTTTATTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (17 bp):
TAACCATGTTTCAAGTT
Found at i:13747243 original size:14 final size:14
Alignment explanation
Indices: 13747226--13747256 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13747216 ATAATATAGT
13747226 ATAATGAATAAAGA
1 ATAATGAATAAAGA
*
13747240 ATAATGAGTAAAGA
1 ATAATGAATAAAGA
13747254 ATA
1 ATA
13747257 GAAAAGTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (14 bp):
ATAATGAATAAAGA
Found at i:13747290 original size:4 final size:4
Alignment explanation
Indices: 13747281--13747311 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
13747271 AGCAAACGTG
*
13747281 AGAA AGAA AGAA AGAA AGAA AGAT AGAA AGA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA
13747312 CTAACAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (4 bp):
AGAA
Found at i:13763854 original size:18 final size:18
Alignment explanation
Indices: 13763833--13763870 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
13763823 TGAAAATAAA
13763833 AAAAATA-ATATTTTATTT
1 AAAAATATATATTTT-TTT
13763851 AAAAATATATATTTTTTT
1 AAAAATATATATTTTTTT
13763869 AA
1 AA
13763871 TATAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAAAATATATATTTTTTT
Found at i:13767733 original size:34 final size:34
Alignment explanation
Indices: 13767689--13767759 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
13767679 CTAAGCTTAG
13767689 TAAGCCCATATAATTCAAAATTAAACTTACCATT
1 TAAGCCCATATAATTCAAAATTAAACTTACCATT
*
13767723 TAAGCTCATATAATTCAAAATTAAACTTACCATT
1 TAAGCCCATATAATTCAAAATTAAACTTACCATT
13767757 TAA
1 TAA
13767760 AGTAATCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (34 bp):
TAAGCCCATATAATTCAAAATTAAACTTACCATT
Found at i:13768044 original size:24 final size:24
Alignment explanation
Indices: 13767977--13768067 Score: 96
Period size: 24 Copynumber: 3.8 Consensus size: 24
13767967 GAGACATGGC
*
13767977 CAGTAAGCTCTTCATGAGCTGATAA
1 CAGTAAGCTCTT-ATGAGCTGAAAA
*
13768002 CAGTAAGCT-TTATTAAGCTGAAAA
1 CAGTAAGCTCTTA-TGAGCTGAAAA
* *
13768026 CGGTAAGCTCCTATGAGCTG-AAA
1 CAGTAAGCTCTTATGAGCTGAAAA
* *
13768049 CAGTAAGCTCATAAGAGCT
1 CAGTAAGCTCTTATGAGCT
13768068 ATGGTGAGTC
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
23 20 0.36
24 25 0.45
25 11 0.20
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (24 bp):
CAGTAAGCTCTTATGAGCTGAAAA
Found at i:13774358 original size:21 final size:21
Alignment explanation
Indices: 13774317--13774358 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
13774307 GAATATTTTA
* *
13774317 AAATAAATTTAATTATTAAAT
1 AAATAAATTTAAGTATGAAAT
13774338 AAATAAATTTAGAGT-TGAAAT
1 AAATAAATTTA-AGTATGAAAT
13774359 CGAATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
AAATAAATTTAAGTATGAAAT
Found at i:13779188 original size:18 final size:17
Alignment explanation
Indices: 13779132--13779190 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 17
13779122 ATTCTCCTTC
* *
13779132 TTTCTCTTTTTCTTTCT
1 TTTCTATTTTTGTTTCT
*
13779149 TTT-T-TTTTTGTTTCG
1 TTTCTATTTTTGTTTCT
*
13779164 TTCCTATTGTTTGTTTCT
1 TTTCTATT-TTTGTTTCT
13779182 TTTCTATTT
1 TTTCTATTT
13779191 CATTTCTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 11 0.32
16 2 0.06
17 6 0.18
18 15 0.44
ACGTcount: A:0.03, C:0.15, G:0.07, T:0.75
Consensus pattern (17 bp):
TTTCTATTTTTGTTTCT
Found at i:13779225 original size:5 final size:5
Alignment explanation
Indices: 13779215--13779343 Score: 258
Period size: 5 Copynumber: 25.8 Consensus size: 5
13779205 ATTTAGTTAT
13779215 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
13779265 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
13779315 TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATA
13779344 TACATTTTTT
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 124 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:13785475 original size:54 final size:54
Alignment explanation
Indices: 13785403--13785627 Score: 324
Period size: 54 Copynumber: 4.2 Consensus size: 54
13785393 TACTGAAATG
* * *
13785403 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* * *
13785457 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* *
13785511 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* * * ** *
13785565 CCCTCGATTTATAAAATTACCATTTTACCCTCAATTTAAAAAATTGGCGTTTTG
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
13785619 CCCTCGATT
1 CCCTCGATT
13785628 GTGAAATTAC
Statistics
Matches: 153, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 153 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
Found at i:13785617 original size:27 final size:27
Alignment explanation
Indices: 13785403--13785602 Score: 310
Period size: 27 Copynumber: 7.4 Consensus size: 27
13785393 TACTGAAATG
*
13785403 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
13785430 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
13785457 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
13785484 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
13785511 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
13785538 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
13785565 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
13785592 CCCTCAATTTA
1 CCCTCGATTTA
13785603 AAAAATTGGC
Statistics
Matches: 156, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:13785622 original size:27 final size:27
Alignment explanation
Indices: 13785417--13785623 Score: 171
Period size: 27 Copynumber: 7.7 Consensus size: 27
13785407 CGATTTGTAG
* * * *
13785417 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCAATTTAAAA
* * *
13785444 AATTACCGTTTCACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCAATTTAAAA
** * * *
13785471 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCAATTTAAAA
* * * *
13785498 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCAATTTAAAA
* * * *
13785525 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCAATTTAAAA
* * *
13785552 AATTATCGTTTTACCCTCGATTTATAA
1 AATTACCGTTTTACCCTCAATTTAAAA
*
13785579 AATTACCATTTTACCCTCAATTTAAAA
1 AATTACCGTTTTACCCTCAATTTAAAA
** *
13785606 AATTGGCGTTTTGCCCTC
1 AATTACCGTTTTACCCTC
13785624 GATTGTGAAA
Statistics
Matches: 159, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCAATTTAAAA
Found at i:13785623 original size:81 final size:81
Alignment explanation
Indices: 13785403--13785627 Score: 317
Period size: 81 Copynumber: 2.8 Consensus size: 81
13785393 TACTGAAATG
* *
13785403 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA
13785468 CAAAATTACTATTTTA
66 CAAAATTACTATTTTA
*
13785484 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA
* * *
13785549 TAGAATTA-TCGTTTTA
66 CAAAATTACT-ATTTTA
* * * * ** *
13785565 CCCTCGATTTATAAAATTACCATTTTACCCTCAATTTAAAAAATTGGCGTTTTGCCCTCGATT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
13785628 GTGAAATTAC
Statistics
Matches: 129, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 1 0.01
81 128 0.99
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA
CAAAATTACTATTTTA
Found at i:13785661 original size:27 final size:27
Alignment explanation
Indices: 13785656--13785836 Score: 240
Period size: 27 Copynumber: 6.7 Consensus size: 27
13785646 CCCTATAAGA
13785656 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
13785683 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
13785710 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* * *
13785737 TAAAATTACCGAAATACCACTGGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* * *
13785764 TGAAATTACCGAAATA-CCCTCAATTTG
1 TAAAATTACCAAAATACCCCT-AGTTTG
* * *
13785791 TAAAATTACCAAAATACCCTTAATTTA
1 TAAAATTACCAAAATACCCCTAGTTTG
*
13785818 CAAAATTA-CAGAAATACCC
1 TAAAATTACCA-AAATACCC
13785837 TTGACTTTCT
Statistics
Matches: 139, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
26 5 0.04
27 131 0.94
28 3 0.02
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:13785698 original size:54 final size:53
Alignment explanation
Indices: 13785626--13785836 Score: 228
Period size: 54 Copynumber: 3.9 Consensus size: 53
13785616 TTGCCCTCGA
* ** **
13785626 TTGTGAAATTACTGAAATACCCCTATAAGATAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTATTTG-TAAAATTACCAAAATACCCCTAGT
13785680 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTAGT
* * * * * *
13785734 TTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-ATTTGTAAAATTACCAAAATACCCCT-AGT
* **
13785788 TTGTAAAATTACCAAAATACCCTTAATTTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCAAAATACCCCT-ATTTGTAAAATTACCA-AAATACCC
13785837 TTGACTTTCT
Statistics
Matches: 132, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
53 5 0.04
54 123 0.93
55 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCCTAGT
Found at i:13785837 original size:27 final size:27
Alignment explanation
Indices: 13785766--13785891 Score: 112
Period size: 27 Copynumber: 4.6 Consensus size: 27
13785756 CTGGTTTGTG
* * **
13785766 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACAGAAATACCCTTAATTTACA
13785793 AAATTACCA-AAATACCCTTAATTTACA
1 AAATTA-CAGAAATACCCTTAATTTACA
*
13785820 AAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACAGAAATACCCTT-AATTTAC--A
* * **
13785849 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCTTAATTTACA
*
13785876 AAATTACTGAAATACC
1 AAATTACAGAAATACC
13785892 ATTGGTTTGT
Statistics
Matches: 82, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
26 2 0.02
27 53 0.65
28 8 0.10
29 19 0.23
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.30
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTAATTTACA
Found at i:13785837 original size:54 final size:54
Alignment explanation
Indices: 13785657--13785921 Score: 216
Period size: 54 Copynumber: 4.9 Consensus size: 54
13785647 CCTATAAGAT
* **
13785657 AAAATTACCA-AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTA-CAGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTAGTTTAC
* * **
13785711 AAAATTACCA-AAATACCCCTAGTTTGTAAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTA-CAGAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTTAGTTTAC
* * * *
13785765 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCTTAATTTAC
1 AAAATTACAGAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTTAGTTTAC
* * * * * *
13785819 AAAATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACAGAAATACCCCT-AGTTTGT-AAAATTACCA-AAATACCCTTAGTTTAC
* ** * * * *
13785875 AAAATTACTGAAATACCATTGGTTTGTAGATTTACCAAAACACCCTT
1 AAAATTACAGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTT
13785922 GTAGGATGAA
Statistics
Matches: 173, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
53 6 0.03
54 113 0.65
55 15 0.09
56 39 0.23
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAAATTACAGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTAGTTTAC
Found at i:13786028 original size:27 final size:28
Alignment explanation
Indices: 13785953--13786029 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
13785943 ACCCCTAATA
*
13785953 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
13785980 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
13786007 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
13786030 ATGTTCCGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.09
26 2 0.05
27 36 0.84
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:13786784 original size:16 final size:16
Alignment explanation
Indices: 13786763--13786793 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13786753 CAAATATGGG
*
13786763 CATGACATTTTGCATA
1 CATGACATATTGCATA
13786779 CATGACATATTGCAT
1 CATGACATATTGCAT
13786794 GGGATATGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (16 bp):
CATGACATATTGCATA
Found at i:13786864 original size:25 final size:24
Alignment explanation
Indices: 13786826--13786895 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
13786816 AGGAAGTGCT
*
13786826 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
13786850 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
13786875 AGAAAGGGCTTTACCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
13786896 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:13786908 original size:24 final size:24
Alignment explanation
Indices: 13786826--13786908 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
13786816 AGGAAGTGCT
* * *
13786826 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTACCCCAGTTTATC
*
13786850 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTACCCCAGTTTATC
*
13786875 AGAAAGGGCTTTACCCCAG-TTATT
1 A-AAAGGGCTTTACCCCAGTTTATC
13786899 AAAAGAGGCT
1 AAAAG-GGCT
13786909 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTACCCCAGTTTATC
Found at i:13787109 original size:41 final size:42
Alignment explanation
Indices: 13787043--13787133 Score: 166
Period size: 41 Copynumber: 2.2 Consensus size: 42
13787033 TAGTCTCCCC
*
13787043 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
13787085 AAATGGGCTTGC-TACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
13787126 AAATGGGC
1 AAATGGGC
13787134 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 36 0.75
42 12 0.25
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:13787197 original size:31 final size:31
Alignment explanation
Indices: 13787157--13787240 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
13787147 CATTTACAGT
*
13787157 AAAGGCTTCGGCTCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
13787188 AAAGACTTCGGCCCAGTGATATTATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
13787219 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
13787241 TCAAGACTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 4 0.09
31 42 0.91
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:13788660 original size:5 final size:5
Alignment explanation
Indices: 13788650--13788676 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
13788640 CAGACTTCTT
13788650 TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TA
13788677 TACTTAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:13792863 original size:29 final size:32
Alignment explanation
Indices: 13792823--13792886 Score: 89
Period size: 29 Copynumber: 2.1 Consensus size: 32
13792813 ATAATCTATA
13792823 TTTTTATAATTTTTAAAAGATTAAA-T-TAAT
1 TTTTTATAATTTTTAAAAGATTAAAGTGTAAT
**
13792853 TTTTTAT-ATTTTTAGGAGATTAAAGTGTAAT
1 TTTTTATAATTTTTAAAAGATTAAAGTGTAAT
13792884 TTT
1 TTT
13792887 ACATTTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 15 0.50
30 8 0.27
31 7 0.23
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (32 bp):
TTTTTATAATTTTTAAAAGATTAAAGTGTAAT
Found at i:13797307 original size:46 final size:44
Alignment explanation
Indices: 13797203--13797310 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
13797193 TGTCTTTGAC
** * * *
13797203 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
13797247 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
13797293 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
13797311 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:13804667 original size:46 final size:44
Alignment explanation
Indices: 13804563--13804670 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
13804553 TGTCTTTGAC
** * * *
13804563 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
13804607 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
13804653 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
13804671 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:13809559 original size:21 final size:21
Alignment explanation
Indices: 13809533--13809573 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13809523 ATCTGCTCAA
* *
13809533 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
13809554 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
13809574 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:13812758 original size:6 final size:6
Alignment explanation
Indices: 13812747--13812771 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13812737 TGCTCAGAGG
13812747 TTGAGA TTGAGA TTGAGA TTGAGA T
1 TTGAGA TTGAGA TTGAGA TTGAGA T
13812772 AGTTATGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (6 bp):
TTGAGA
Found at i:13813011 original size:31 final size:30
Alignment explanation
Indices: 13812970--13813028 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
13812960 TTCAATTTGA
13812970 TCAAATTTAA-TCTCTATACTCTTTGAATTAG
1 TCAAATTTAATTC-CTATACT-TTTGAATTAG
* *
13813001 TCAAGTTTAATTCCTATACTTTTTAATT
1 TCAAATTTAATTCCTATACTTTTGAATT
13813029 TTTAAAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 16 0.64
32 2 0.08
ACGTcount: A:0.31, C:0.15, G:0.05, T:0.49
Consensus pattern (30 bp):
TCAAATTTAATTCCTATACTTTTGAATTAG
Found at i:13814342 original size:28 final size:30
Alignment explanation
Indices: 13814292--13814351 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 30
13814282 ACTTATTTTC
13814292 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
13814322 TTGTTAA-TTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
13814350 TT
1 TT
13814352 ACTTGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 18 0.64
29 3 0.11
30 7 0.25
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:13817201 original size:33 final size:33
Alignment explanation
Indices: 13817164--13817231 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
13817154 CTGCAAAGAA
13817164 TAAGGCTAAGCAGATTGAAGAAGCAAATTCTGG
1 TAAGGCTAAGCAGATTGAAGAAGCAAATTCTGG
13817197 TAAGGCTAAGCAGATTGAAGAAGCAAATTCTGG
1 TAAGGCTAAGCAGATTGAAGAAGCAAATTCTGG
13817230 TA
1 TA
13817232 TTCTTCCCGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (33 bp):
TAAGGCTAAGCAGATTGAAGAAGCAAATTCTGG
Found at i:13824630 original size:13 final size:13
Alignment explanation
Indices: 13824612--13824637 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13824602 ACATAATAAA
13824612 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
13824625 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
13824638 CTTCCAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:13827011 original size:15 final size:14
Alignment explanation
Indices: 13826987--13827016 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
13826977 TTCACAGAAC
13826987 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
13827001 AAAAAAGAAAAAAGA
1 AAAAAA-AAAAAAGA
13827016 A
1 A
13827017 GAAGACTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:13835882 original size:22 final size:22
Alignment explanation
Indices: 13835854--13835919 Score: 114
Period size: 22 Copynumber: 3.0 Consensus size: 22
13835844 ATCAAGTTAG
*
13835854 AATTGGATATCGCAATATCCGA
1 AATTGGATATCGCAATATCCAA
13835876 AATTGGATATCGCAATATCCAA
1 AATTGGATATCGCAATATCCAA
*
13835898 AATTGGATATCGCAATACCCAA
1 AATTGGATATCGCAATATCCAA
13835920 GTTAGAATTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (22 bp):
AATTGGATATCGCAATATCCAA
Found at i:13843157 original size:16 final size:17
Alignment explanation
Indices: 13843136--13843173 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
13843126 AATAAAAGAC
13843136 AGAGAAT-AAAGAACAA
1 AGAGAATGAAAGAACAA
* *
13843152 AGAGAATGAAATAGCAA
1 AGAGAATGAAAGAACAA
13843169 AGAGA
1 AGAGA
13843174 GAGTGTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.63, C:0.05, G:0.24, T:0.08
Consensus pattern (17 bp):
AGAGAATGAAAGAACAA
Found at i:13850746 original size:64 final size:64
Alignment explanation
Indices: 13850667--13850850 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
13850657 AGACATTATG
* * *
13850667 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGATAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
13850731 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
13850796 AA
63 AA
* * * *
13850798 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
13850851 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:13855508 original size:30 final size:30
Alignment explanation
Indices: 13855474--13855538 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
13855464 GAGGAACAAG
13855474 TCCAATATATGGGTAACAATAACTCTCAAT
1 TCCAATATATGGGTAACAATAACTCTCAAT
13855504 TCCAATATATGGGTAACAATAACTCTCAAT
1 TCCAATATATGGGTAACAATAACTCTCAAT
*
13855534 CCCAA
1 TCCAA
13855539 AATAACCCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (30 bp):
TCCAATATATGGGTAACAATAACTCTCAAT
Found at i:13859602 original size:3 final size:3
Alignment explanation
Indices: 13859594--13859623 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
13859584 AATAATTTGG
13859594 TTA TTA TTA TTA TTA TTTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TT
13859624 TTGTATGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:13859615 original size:13 final size:13
Alignment explanation
Indices: 13859597--13859624 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13859587 AATTTGGTTA
13859597 TTATTATTATTAT
1 TTATTATTATTAT
13859610 TTATTATTATTAT
1 TTATTATTATTAT
13859623 TT
1 TT
13859625 TGTATGTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:13861500 original size:20 final size:20
Alignment explanation
Indices: 13861457--13861501 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
13861447 ACTGTTTTGT
13861457 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
13861477 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
13861496 TATGGG
1 TATGGG
13861502 TAAGGCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:13866550 original size:14 final size:14
Alignment explanation
Indices: 13866531--13866569 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
13866521 TCAAAACAAG
13866531 AATTAAGAACACAT
1 AATTAAGAACACAT
13866545 AATTAAGAACACAT
1 AATTAAGAACACAT
13866559 AATTAAGAACA
1 AATTAAGAACA
13866570 AGTTAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:13867757 original size:17 final size:17
Alignment explanation
Indices: 13867737--13867778 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
13867727 AACTGCTTCA
13867737 TTTGTACCCTCACCGAC
1 TTTGTACCCTCACCGAC
13867754 TTTGTACCCTCACCGAC
1 TTTGTACCCTCACCGAC
*
13867771 TTTATACC
1 TTTGTACC
13867779 TTTAGATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.19, C:0.38, G:0.10, T:0.33
Consensus pattern (17 bp):
TTTGTACCCTCACCGAC
Found at i:13869970 original size:10 final size:10
Alignment explanation
Indices: 13869955--13869984 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
13869945 TAAAGACTTA
13869955 TCTTTTTTTT
1 TCTTTTTTTT
13869965 TC-TTTTTTT
1 TCTTTTTTTT
13869974 TCTTTTTTTT
1 TCTTTTTTTT
13869984 T
1 T
13869985 GTTCTACGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:13869972 original size:9 final size:9
Alignment explanation
Indices: 13869958--13869983 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
13869948 AGACTTATCT
13869958 TTTTTTTTC
1 TTTTTTTTC
13869967 TTTTTTTTC
1 TTTTTTTTC
13869976 TTTTTTTT
1 TTTTTTTT
13869984 TGTTCTACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:13871485 original size:21 final size:21
Alignment explanation
Indices: 13871436--13871491 Score: 87
Period size: 20 Copynumber: 2.7 Consensus size: 21
13871426 CACGTTAGTG
**
13871436 AATAAATATGGATATAAATAA
1 AATAAATATTTATATAAATAA
13871457 AA-AAATATTTATATAAATAA
1 AATAAATATTTATATAAATAA
13871477 AATAAATATTTATAT
1 AATAAATATTTATAT
13871492 TTAAAATATC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AATAAATATTTATATAAATAA
Found at i:13872082 original size:2 final size:2
Alignment explanation
Indices: 13872075--13872101 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13872065 GTGGGTTCTC
13872075 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
13872102 CACATCTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13873983 original size:24 final size:24
Alignment explanation
Indices: 13873930--13873986 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
13873920 CATACATAAA
13873930 TTAATTTTTAATAATAAAACAAAT
1 TTAATTTTTAATAATAAAACAAAT
** *
13873954 GAAATTTTTAATAA-AAAGACTAAT
1 TTAATTTTTAATAATAAA-ACAAAT
13873978 TTAATTTTT
1 TTAATTTTT
13873987 GATCTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 3 0.11
24 24 0.89
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
TTAATTTTTAATAATAAAACAAAT
Found at i:13877006 original size:20 final size:19
Alignment explanation
Indices: 13876981--13877024 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
13876971 TTATATTTTT
* *
13876981 AAAATTCATTATTTACTATA
1 AAAATTCATTA-GTACGATA
*
13877001 AAAATTTATTAGTACGATA
1 AAAATTCATTAGTACGATA
13877020 AAAAT
1 AAAAT
13877025 AATTTCTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (19 bp):
AAAATTCATTAGTACGATA
Found at i:13878921 original size:35 final size:36
Alignment explanation
Indices: 13878793--13878926 Score: 148
Period size: 35 Copynumber: 3.7 Consensus size: 36
13878783 TCCTCATTGA
* *
13878793 AATACCATACCTACATTTTACAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCGGTATGAGAT
* ** *
13878828 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCGGTAT-GA---GAT
13878868 AATACCATACCTACATTTCACAACTCGGTAT-AGAT
1 AATACCATACCTACATTTCACAACTCGGTATGAGAT
*
13878903 GATACCATACCTACATTTCA-AACT
1 AATACCATACCTACATTTCACAACT
13878927 TTTCCATGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
34 4 0.05
35 48 0.58
36 1 0.01
38 1 0.01
39 2 0.02
40 27 0.33
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.31
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCGGTATGAGAT
Found at i:13878936 original size:75 final size:74
Alignment explanation
Indices: 13878789--13878926 Score: 199
Period size: 75 Copynumber: 1.9 Consensus size: 74
13878779 GTTTTCCTCA
* * * *
13878789 TTGAAATACCATACCTACATTTTACAACTCGGTATGGGAAATGCCATACCTACATTTCTTAACTC
1 TTGAAATACCATACCTACATTTCACAACTCGGTATGAGAAATACCATACCTACATTTCTAAACTC
13878854 AGTATGGAT
66 AGTATGGAT
*
13878863 TTGATAATACCATACCTACATTTCACAACTCGGTAT-AGATGATACCATACCTACATTTC-AAAC
1 TTGA-AATACCATACCTACATTTCACAACTCGGTATGAGA-AATACCATACCTACATTTCTAAAC
13878926 T
64 T
13878927 TTTCCATGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
74 10 0.18
75 47 0.82
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCGGTATGAGAAATACCATACCTACATTTCTAAACTC
AGTATGGAT
Found at i:13880502 original size:22 final size:21
Alignment explanation
Indices: 13880447--13880502 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
13880437 CTTCTTGGCC
13880447 ATAATTT-TAAAA-ACTTTTT
1 ATAATTTATAAAATACTTTTT
13880466 A-AGATTTA-AATAATACTTTTT
1 ATA-ATTTATAA-AATACTTTTT
13880487 ATAACTTTATAAAATA
1 ATAA-TTTATAAAATA
13880503 AATAAATGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
18 1 0.03
19 7 0.23
20 2 0.07
21 9 0.30
22 9 0.30
23 2 0.07
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (21 bp):
ATAATTTATAAAATACTTTTT
Found at i:13888165 original size:42 final size:42
Alignment explanation
Indices: 13888118--13888201 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
13888108 GGCATTTAAC
* *
13888118 GAGTTTTTTTTTAAGCCGTTTTAGGTTATTTTATTAAATTTT
1 GAGTTTGTTTCTAAGCCGTTTTAGGTTATTTTATTAAATTTT
*
13888160 GAGTTTGTTTCTAAGCCGTTTTAGTTTATTTTATTAAATTTT
1 GAGTTTGTTTCTAAGCCGTTTTAGGTTATTTTATTAAATTTT
13888202 CTGTTTCAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.21, C:0.06, G:0.14, T:0.58
Consensus pattern (42 bp):
GAGTTTGTTTCTAAGCCGTTTTAGGTTATTTTATTAAATTTT
Found at i:13889478 original size:40 final size:39
Alignment explanation
Indices: 13889420--13889556 Score: 127
Period size: 37 Copynumber: 3.5 Consensus size: 39
13889410 ACACACCAAT
*
13889420 TTGACACCCAGTGCCTCATAGGATAATTCGAAGTAGTAAA
1 TTGACACCCAGTGCCTCATAGGATAAATCGAA-TAGTAAA
* * *
13889460 TTGACACCCAGTGTCTCATTA-GTTAAACCG-A-AGTAAA
1 TTGACACCCAGTGCCTCA-TAGGATAAATCGAATAGTAAA
* * * * *
13889497 TTGGCACCCAGTGCCTCATCGAATAAATCAGAAATAATAAC
1 TTGACACCCAGTGCCTCATAGGATAAATC-G-AATAGTAAA
*
13889538 TTGACACCCAGTGTCTCAT
1 TTGACACCCAGTGCCTCAT
13889557 CGACTCGAAG
Statistics
Matches: 77, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
36 1 0.01
37 27 0.35
38 1 0.01
39 1 0.01
40 24 0.31
41 23 0.30
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (39 bp):
TTGACACCCAGTGCCTCATAGGATAAATCGAATAGTAAA
Found at i:13893730 original size:40 final size:40
Alignment explanation
Indices: 13893685--13893762 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
13893675 ACATACCATG
* *
13893685 TGGGGATAAAATCGATCCA-CTCAACCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCATC-CAACCCTACACACCAAGTA
*
13893725 TGGGGATATAATCAACCCATCCAACCCTACACACCAAG
1 TGGGGATAAAATCAACCCATCCAACCCTACACACCAAG
13893763 AGGTACCGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.37, C:0.32, G:0.14, T:0.17
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:13899819 original size:21 final size:21
Alignment explanation
Indices: 13899789--13899828 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
13899779 TTTGCCAAAG
* *
13899789 ATATGTATTGGATTGAATTGA
1 ATATGAATTGGATTAAATTGA
*
13899810 ATATGAATTGTATTAAATT
1 ATATGAATTGGATTAAATT
13899829 AAGCTAGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (21 bp):
ATATGAATTGGATTAAATTGA
Found at i:13900181 original size:25 final size:25
Alignment explanation
Indices: 13900146--13900360 Score: 149
Period size: 25 Copynumber: 8.7 Consensus size: 25
13900136 ACACACCAAA
* *
13900146 GCTCTTATGAGCATCCCGATATTTG
1 GCTCTCATGAGCTTCCCGATATTTG
* * *
13900171 ACTCTCATGAGTTTCCCGTTATTTG
1 GCTCTCATGAGCTTCCCGATATTTG
* ** *
13900196 GCTATCCGGAGCTTCCCGATAATTG
1 GCTCTCATGAGCTTCCCGATATTTG
* *
13900221 GCTCTTATGAGCTTCCCGAT-TAATG
1 GCTCTCATGAGCTTCCCGATAT-TTG
*
13900246 GCTCTCCA-GAGCTTTCCGATA-TTG
1 GCTCT-CATGAGCTTCCCGATATTTG
* *
13900270 GCTCGCATGAGCTTCTCGA-ATTTG
1 GCTCTCATGAGCTTCCCGATATTTG
* *
13900294 GCTCTCTTGAGCTTTCCG-T-TTATG
1 GCTCTCATGAGCTTCCCGATATT-TG
* * *
13900318 GCTCGT-ATGAGATTCCTGATAATTG
1 GCTC-TCATGAGCTTCCCGATATTTG
*
13900343 GCTCGT-AAGAGCTTCCCG
1 GCTC-TCATGAGCTTCCCG
13900361 TTATACAACT
Statistics
Matches: 144, Mismatches: 36, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
23 5 0.03
24 46 0.32
25 91 0.63
26 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGATATTTG
Found at i:13900310 original size:48 final size:48
Alignment explanation
Indices: 13900177--13900333 Score: 140
Period size: 48 Copynumber: 3.2 Consensus size: 48
13900167 TTTGACTCTC
* * * * *
13900177 ATGAGTTTCCCG-TTATTTGGCTATCCGGAGCTTCCCGATAATTGGCTCTT
1 ATGAGCTTCCCGATTA--TGGCTCTCCAGAGCTTTCCGAT-ATTGGCTCGT
*
13900227 ATGAGCTTCCCGATTAATGGCTCTCCAGAGCTTTCCGATATTGGCTCGC
1 ATGAGCTTCCCGATT-ATGGCTCTCCAGAGCTTTCCGATATTGGCTCGT
* ** *
13900276 ATGAGCTTCTCGAATT-TGGCTCTCTTGAGCTTTCCG-TTTATGGCTCGT
1 ATGAGCTTCCCG-ATTATGGCTCTCCAGAGCTTTCCGATAT-TGGCTCGT
*
13900324 ATGAGATTCC
1 ATGAGCTTCC
13900334 TGATAATTGG
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
47 2 0.02
48 33 0.37
49 19 0.21
50 33 0.37
51 2 0.02
52 1 0.01
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (48 bp):
ATGAGCTTCCCGATTATGGCTCTCCAGAGCTTTCCGATATTGGCTCGT
Found at i:13900404 original size:25 final size:25
Alignment explanation
Indices: 13900302--13900407 Score: 74
Period size: 25 Copynumber: 4.3 Consensus size: 25
13900292 TGGCTCTCTT
*
13900302 GAGCTTTCC-GTT-TATGGCTCGTAT
1 GAGC-TTCCTGTTATATGGCTCGTAA
* *
13900326 GAGATTCCTGATA-ATTGGCTCGTAA
1 GAGCTTCCTGTTATA-TGGCTCGTAA
* *** ** *
13900351 GAGCTTCCCGTTATACAACTCACAT
1 GAGCTTCCTGTTATATGGCTCGTAA
*
13900376 GAGCTTCCTGTTATATGGCTCGGAA
1 GAGCTTCCTGTTATATGGCTCGTAA
13900401 GAGCTTC
1 GAGCTTC
13900408 TCGTTTGCAT
Statistics
Matches: 59, Mismatches: 19, Indels: 7
0.69 0.22 0.08
Matches are distributed among these distances:
23 4 0.07
24 6 0.10
25 48 0.81
26 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGCTCGTAA
Found at i:13909068 original size:8 final size:8
Alignment explanation
Indices: 13909055--13909083 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
13909045 TTATGTTTAG
13909055 TATATTAT
1 TATATTAT
13909063 TATATTAT
1 TATATTAT
13909071 TATATTAT
1 TATATTAT
13909079 TATAT
1 TATAT
13909084 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:13909174 original size:8 final size:8
Alignment explanation
Indices: 13909161--13909188 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
13909151 TTTTTTATAG
13909161 TATATTAT
1 TATATTAT
13909169 TATATTAT
1 TATATTAT
13909177 TATATTAT
1 TATATTAT
13909185 TATA
1 TATA
13909189 ATAAAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TATATTAT
Found at i:13909220 original size:5 final size:5
Alignment explanation
Indices: 13909210--13909240 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
13909200 TTATGTTTTA
13909210 ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
13909241 AAACTAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:13909231 original size:111 final size:108
Alignment explanation
Indices: 13909017--13909221 Score: 339
Period size: 104 Copynumber: 1.9 Consensus size: 108
13909007 TGAGGCAGTT
13909017 TATCGTGAAGAAAATCTAAGATTTTTTTTTATGTTTAGTATATTATTATATTATTATATTATTAT
1 TATCGTGAAGAAAATCTAAGATTTTTTTTTA---TTAGTATATTATTATATTATTATATTATTAT
13909082 ATAATAAAGATACTTTATGTTTTATTTATATTTATATATAAATTGA
63 ATAATAAAGATACTTTATGTTTTATTTATATTTATATATAAATTGA
13909128 TATCGTGAAGAAAATCTAAGA-TTTTTTTTA-TAGTATATTATTATATTATTATATTA-T-TATA
1 TATCGTGAAGAAAATCTAAGATTTTTTTTTATTAGTATATTATTATATTATTATATTATTATATA
*
13909189 ATAAAGATACTTTATGTTTTAATTATA-TTATAT
66 ATAAAGATACTTTATGTTTTATTTATATTTATAT
13909222 TATATTATAT
Statistics
Matches: 93, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
103 6 0.06
104 30 0.32
105 1 0.01
106 26 0.28
110 9 0.10
111 21 0.23
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.52
Consensus pattern (108 bp):
TATCGTGAAGAAAATCTAAGATTTTTTTTTATTAGTATATTATTATATTATTATATTATTATATA
ATAAAGATACTTTATGTTTTATTTATATTTATATATAAATTGA
Found at i:13910522 original size:15 final size:15
Alignment explanation
Indices: 13910502--13910558 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
13910492 CGATGAATTT
*
13910502 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
13910517 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
13910532 ATTGAAATTATATTG
1 ATTGAAATTATATTG
13910547 ATTG-AATTATAT
1 ATTGAAATTATAT
13910559 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:13910983 original size:21 final size:21
Alignment explanation
Indices: 13910944--13911039 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
13910934 AGGCACTTTA
13910944 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
*
13910967 TGTGTCGTATCAAGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
13910988 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
13911009 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
13911030 TGTGTCGTAT
1 TGTGTCGTAT
13911040 ATTGATCAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
21 56 0.86
23 9 0.14
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:13911034 original size:42 final size:42
Alignment explanation
Indices: 13910931--13911039 Score: 146
Period size: 42 Copynumber: 2.5 Consensus size: 42
13910921 GGCTTTACTG
13910931 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
* * **
13910975 ATCAAGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
* *
13911017 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
13911040 ATTGATCAAG
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 37 0.67
44 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:13922937 original size:11 final size:11
Alignment explanation
Indices: 13922921--13922950 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
13922911 TACTTTTCTC
13922921 AAAAAAATAAA
1 AAAAAAATAAA
13922932 AAAAAAATAAA
1 AAAAAAATAAA
13922943 AATAAAAA
1 AA-AAAAA
13922951 CAAGACTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:13932799 original size:51 final size:51
Alignment explanation
Indices: 13932717--13932828 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 51
13932707 CTCAAACTTA
* *
13932717 CTTCATACTTCATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * * * *
13932768 CTTCATATTTCATTCGGAATAATTGCTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
13932819 CTTCATATTT
1 CTTCATATTT
13932829 TATCTGGATA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.40
Consensus pattern (51 bp):
CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:13934752 original size:2 final size:2
Alignment explanation
Indices: 13934739--13934773 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
13934729 GTTATTTTAA
*
13934739 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13934774 AACATACCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:13936692 original size:16 final size:16
Alignment explanation
Indices: 13936671--13936715 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
13936661 TCATTTTTAA
*
13936671 ATTAT-ATATTTCATAT
1 ATTATAATATTACA-AT
13936687 ATTATAATATTACAAT
1 ATTATAATATTACAAT
*
13936703 ATTACAATATTAC
1 ATTATAATATTAC
13936716 GTTGTGTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATAATATTACAAT
Found at i:13936698 original size:8 final size:8
Alignment explanation
Indices: 13936685--13936715 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
13936675 TATATTTCAT
*
13936685 ATATTATA
1 ATATTACA
13936693 ATATTACA
1 ATATTACA
13936701 ATATTACA
1 ATATTACA
13936709 ATATTAC
1 ATATTAC
13936716 GTTGTGTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (8 bp):
ATATTACA
Found at i:13937866 original size:13 final size:13
Alignment explanation
Indices: 13937848--13937872 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13937838 ATTTCATGAG
13937848 GTGAAAAGAAAAC
1 GTGAAAAGAAAAC
13937861 GTGAAAAGAAAA
1 GTGAAAAGAAAA
13937873 AGGAGGCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.24, T:0.08
Consensus pattern (13 bp):
GTGAAAAGAAAAC
Found at i:13947244 original size:15 final size:15
Alignment explanation
Indices: 13947205--13947247 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
13947195 ACGAGAATGA
13947205 TAAAATTATATTTAAAT
1 TAAAATTATA--TAAAT
* *
13947222 TAATATTATATATAT
1 TAAAATTATATAAAT
13947237 TAAAATTATAT
1 TAAAATTATAT
13947248 TTATCTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 14 0.61
17 9 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TAAAATTATATAAAT
Found at i:13951323 original size:44 final size:45
Alignment explanation
Indices: 13951261--13951356 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 45
13951251 TCGTATATTC
* * *
13951261 TTTGA-TTCAGTATTTAAACATGTAATAACTGGTG-AAGCCAATG
1 TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA
* *
13951304 TTTGAGTTCTGTATTTAAACAAGTAAGAACTGGTGAAAGGCAATA
1 TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA
13951349 TTTGAGTT
1 TTTGAGTT
13951357 GAGAGAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 5 0.11
44 26 0.57
45 15 0.33
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.35
Consensus pattern (45 bp):
TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA
Found at i:13953962 original size:19 final size:19
Alignment explanation
Indices: 13953938--13953983 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
13953928 TAACTAGAAT
13953938 CTTTCTTTCACCAAACAAC
1 CTTTCTTTCACCAAACAAC
13953957 CTTTCTTTCACCAAACAAC
1 CTTTCTTTCACCAAACAAC
*
13953976 TTTTCTTT
1 CTTTCTTT
13953984 TGAAACCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (19 bp):
CTTTCTTTCACCAAACAAC
Found at i:13955080 original size:23 final size:23
Alignment explanation
Indices: 13955054--13955099 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
13955044 ATCATGGTTG
13955054 AATTTGGATGATAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
13955077 AATTTGGATGATAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
13955100 CTAGATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (23 bp):
AATTTGGATGATAATCATCTCTT
Found at i:13955394 original size:18 final size:19
Alignment explanation
Indices: 13955371--13955413 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
13955361 CAGGCAAGCC
13955371 TTTTG-AAGTAGTATTGTA
1 TTTTGTAAGTAGTATTGTA
13955389 TTTTGATTAAGTAGTATTGTA
1 TTTTG--TAAGTAGTATTGTA
13955410 TTTT
1 TTTT
13955414 TGGATAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.23
21 17 0.77
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (19 bp):
TTTTGTAAGTAGTATTGTA
Found at i:13957753 original size:16 final size:16
Alignment explanation
Indices: 13957732--13957803 Score: 108
Period size: 16 Copynumber: 4.5 Consensus size: 16
13957722 TGAATTACTA
13957732 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTCC
*
13957748 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
* *
13957764 ATTACAGCTCTATTCA
1 ATTACAGTTCTATTCC
*
13957780 ATTACAGTCCTATTCC
1 ATTACAGTTCTATTCC
13957796 ATTACAGT
1 ATTACAGT
13957804 GAACCAAACG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:13957909 original size:16 final size:15
Alignment explanation
Indices: 13957888--13957959 Score: 99
Period size: 16 Copynumber: 4.5 Consensus size: 15
13957878 CGTTTGGTTC
13957888 ACTGTAATGGAATAGG
1 ACTGTAATGGAATA-G
*
13957904 ACTGTAATTGAATAG
1 ACTGTAATGGAATAG
13957919 AGCTGTAATGGAATAG
1 A-CTGTAATGGAATAG
13957935 AGCTGTAATGGAATAG
1 A-CTGTAATGGAATAG
13957951 AACTGTAAT
1 -ACTGTAAT
13957960 CAGTAATTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
15 2 0.04
16 49 0.94
17 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (15 bp):
ACTGTAATGGAATAG
Found at i:13957925 original size:32 final size:32
Alignment explanation
Indices: 13957888--13957959 Score: 110
Period size: 32 Copynumber: 2.2 Consensus size: 32
13957878 CGTTTGGTTC
*
13957888 ACTGTAATGGAATAG-GACTGTAATTGAATAGA
1 ACTGTAATGGAATAGAG-CTGTAATGGAATAGA
*
13957920 GCTGTAATGGAATAGAGCTGTAATGGAATAGA
1 ACTGTAATGGAATAGAGCTGTAATGGAATAGA
13957952 ACTGTAAT
1 ACTGTAAT
13957960 CAGTAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 35 0.97
33 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (32 bp):
ACTGTAATGGAATAGAGCTGTAATGGAATAGA
Found at i:13958029 original size:44 final size:46
Alignment explanation
Indices: 13957941--13958034 Score: 140
Period size: 44 Copynumber: 2.1 Consensus size: 46
13957931 ATAGAGCTGT
*
13957941 AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATGGAATAGAACTATAATCAGTAATTCAATTGTTTGGTTGAATGG
*
13957987 AATGGAATAGAACTATAAT-AGT-ATTC-TTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTATAATCAGTAATTCAAT-TGTTTGGTTGAATGG
13958031 AATG
1 AATG
13958035 ATGTTGTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 3 0.07
46 18 0.40
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (46 bp):
AATGGAATAGAACTATAATCAGTAATTCAATTGTTTGGTTGAATGG
Found at i:13958295 original size:58 final size:57
Alignment explanation
Indices: 13958184--13958298 Score: 144
Period size: 58 Copynumber: 2.0 Consensus size: 57
13958174 TGACCATATT
* * *
13958184 TTAACATAATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTC
1 TTAACATAATTATTATT-AATATAAATTAAAAAAATAATATATAATCTAATAAAATTC
*
13958242 TTAATATAATTATTATT-ATATAAATTAAAAAATCATAATATATAATACT-ATAAAATT
1 TTAACATAATTATTATTAATATAAATTAAAAAA--ATAATATATAAT-CTAATAAAATT
13958299 AATATATAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
56 13 0.26
58 36 0.72
59 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (57 bp):
TTAACATAATTATTATTAATATAAATTAAAAAAATAATATATAATCTAATAAAATTC
Found at i:13960619 original size:23 final size:23
Alignment explanation
Indices: 13960590--13960635 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
13960580 TCATATCTAG
13960590 AAGAGATGATTATCATCCAAATT
1 AAGAGATGATTATCATCCAAATT
13960613 AAGAGATGATTATCATCCAAATT
1 AAGAGATGATTATCATCCAAATT
13960636 CAACCATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (23 bp):
AAGAGATGATTATCATCCAAATT
Found at i:13961875 original size:27 final size:27
Alignment explanation
Indices: 13961837--13961892 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
13961827 GGATTAAAAA
13961837 AAAGGCTCTTTCATGAGCTTCCCGATT
1 AAAGGCTCTTTCATGAGCTTCCCGATT
13961864 AAAGGCTCTTTCATGAGCTTCCCGATT
1 AAAGGCTCTTTCATGAGCTTCCCGATT
13961891 AA
1 AA
13961893 TTGGCTCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (27 bp):
AAAGGCTCTTTCATGAGCTTCCCGATT
Found at i:13982937 original size:5 final size:6
Alignment explanation
Indices: 13982922--13982946 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13982912 TAAATTCTCA
13982922 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
13982947 TTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:13987958 original size:19 final size:19
Alignment explanation
Indices: 13987917--13987959 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
13987907 TTTATTTTTT
* * **
13987917 TAAAATATAAATTTTAATT
1 TAAAATATAAATATAAAAA
13987936 TAAAATATAAATATAAAAA
1 TAAAATATAAATATAAAAA
13987955 TAAAA
1 TAAAA
13987960 ATTTATGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAAATATAAATATAAAAA
Found at i:13991411 original size:71 final size:71
Alignment explanation
Indices: 13991284--13991426 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
13991274 TTATCCTTTC
13991284 AAGAACTCCACATTTATTTTTGTAAGACTATTCCATAATTTATGGAATTTATGAACCACTTTTAT
1 AAGAACTCCACATTTATTTTTGTAAGACTATTCCATAATTTATGGAATTTATGAACCACTTTTAT
13991349 TTATTT
66 TTATTT
*
13991355 AAGAACTCCACATTTATTTTTGTAAGTCTATTCCATAATTTATGGAATTTATGAACCACTTTTAT
1 AAGAACTCCACATTTATTTTTGTAAGACTATTCCATAATTTATGGAATTTATGAACCACTTTTAT
13991420 TTATTT
66 TTATTT
13991426 A
1 A
13991427 TGATAATTTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.45
Consensus pattern (71 bp):
AAGAACTCCACATTTATTTTTGTAAGACTATTCCATAATTTATGGAATTTATGAACCACTTTTAT
TTATTT
Found at i:14004619 original size:24 final size:24
Alignment explanation
Indices: 14004586--14004642 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
14004576 AAAAAAACTA
* *
14004586 TTGCTTTTTTTTTTTACTATTTTC
1 TTGCTCTTTTTTTTAACTATTTTC
*
14004610 TTGCTC-TTTTTTTAACTATTTTG
1 TTGCTCTTTTTTTTAACTATTTTC
14004633 TTGCTACTTT
1 TTGCT-CTTT
14004643 CTTGTTGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 20 0.71
24 6 0.21
25 2 0.07
ACGTcount: A:0.11, C:0.14, G:0.07, T:0.68
Consensus pattern (24 bp):
TTGCTCTTTTTTTTAACTATTTTC
Found at i:14004627 original size:23 final size:24
Alignment explanation
Indices: 14004593--14004642 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
14004583 CTATTGCTTT
*
14004593 TTTTTTTTACTATTTTCTTGCT-C
1 TTTTTTTAACTATTTTCTTGCTAC
*
14004616 TTTTTTTAACTATTTTGTTGCTAC
1 TTTTTTTAACTATTTTCTTGCTAC
14004640 TTT
1 TTT
14004643 CTTGTTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.12, C:0.14, G:0.06, T:0.68
Consensus pattern (24 bp):
TTTTTTTAACTATTTTCTTGCTAC
Found at i:14004661 original size:33 final size:33
Alignment explanation
Indices: 14004617--14004684 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
14004607 TTCTTGCTCT
* * *
14004617 TTTTTTAACTATTTTGTTGCTA-CTTTCTTGTTG
1 TTTTTTAACTATTATATTGCTATCATT-TTGTTG
*
14004650 TTTTTTCACTATTATATTGCTATCATTTTGTTG
1 TTTTTTAACTATTATATTGCTATCATTTTGTTG
14004683 TT
1 TT
14004685 ATTGTTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 27 0.90
34 3 0.10
ACGTcount: A:0.15, C:0.12, G:0.10, T:0.63
Consensus pattern (33 bp):
TTTTTTAACTATTATATTGCTATCATTTTGTTG
Found at i:14014181 original size:42 final size:42
Alignment explanation
Indices: 14014132--14014214 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
14014122 CTAGTTCTGG
* * *
14014132 GTTCGACTCCTTGTGTGTACTTTTTGGAAGAATATTTTTTTA
1 GTTCGACTCATTATATGTACTTTTTGGAAGAATATTTTTTTA
14014174 GTTCGACTCATTATATGTACTTTTTGGAAGAATATTTTTTT
1 GTTCGACTCATTATATGTACTTTTTGGAAGAATATTTTTTT
14014215 TATTCTCTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.51
Consensus pattern (42 bp):
GTTCGACTCATTATATGTACTTTTTGGAAGAATATTTTTTTA
Found at i:14014909 original size:8 final size:8
Alignment explanation
Indices: 14014896--14014949 Score: 60
Period size: 8 Copynumber: 7.0 Consensus size: 8
14014886 GGATCATAGA
14014896 ATTTTTTT
1 ATTTTTTT
14014904 A--TTTTT
1 ATTTTTTT
14014910 ATTTTTTT
1 ATTTTTTT
14014918 ATTTTTTT
1 ATTTTTTT
**
14014926 A-TTTTAA
1 ATTTTTTT
14014933 ATTTTTTTT
1 A-TTTTTTT
14014942 ATTTTTTT
1 ATTTTTTT
14014950 GCAAAATCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 6 0.16
7 5 0.13
8 22 0.58
9 5 0.13
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (8 bp):
ATTTTTTT
Found at i:14014930 original size:14 final size:14
Alignment explanation
Indices: 14014896--14014923 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14014886 GGATCATAGA
14014896 ATTTTTTTATTTTT
1 ATTTTTTTATTTTT
14014910 ATTTTTTTATTTTT
1 ATTTTTTTATTTTT
14014924 TTATTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
ATTTTTTTATTTTT
Found at i:14015702 original size:91 final size:91
Alignment explanation
Indices: 14015582--14015917 Score: 496
Period size: 91 Copynumber: 3.7 Consensus size: 91
14015572 CATAGTGTCA
*
14015582 TTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATT
1 TTCAACCATGGTCTTACTCA-TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATT
*
14015646 TTTTCATGTCATGTTGCCATGGTATCT
65 TTTTCATGTCACGTTGCCATGGTATCT
* * ***
14015673 TTCAACCATGGTCTTATTCATTTTATGTCACACTGCCATGGTATCTTTCAACCATGGTCTTATTC
1 TTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATT-
* *
14015738 ATTTT-ATGTCACGCTACCATGGTATCT
65 -TTTTCATGTCACGTTGCCATGGTATCT
* ** *
14015765 TTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
1 TTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTT
14015830 TTTCATGTCACGTTGCCATGGTATCT
66 TTTCATGTCACGTTGCCATGGTATCT
* *
14015856 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
14015918 CACATTTCAT
Statistics
Matches: 218, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
90 6 0.03
91 131 0.60
92 77 0.35
93 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (91 bp):
TTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTT
TTTCATGTCACGTTGCCATGGTATCT
Found at i:14015897 original size:183 final size:183
Alignment explanation
Indices: 14015582--14015917 Score: 555
Period size: 183 Copynumber: 1.8 Consensus size: 183
14015572 CATAGTGTCA
* * * *
14015582 TTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTT
1 TTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
* ** * *
14015647 TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTATGTCACACTGCCAT
66 TTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACACTGCCAT
14015712 GGTATCTTTCAACCATGGTCTTATTCATTTTATGTCACGCTACCATGGTATCT
131 GGTATCTTTCAACCATGGTCTTATTCATTTTATGTCACGCTACCATGGTATCT
*
14015765 TTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
1 TTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
***
14015830 TTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAT
66 TTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACACTGCCAT
14015895 GGTATCTTTCAACCATGGTCTTA
131 GGTATCTTTCAACCATGGTCTTA
14015918 CACATTTCAT
Statistics
Matches: 140, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
183 140 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (183 bp):
TTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
TTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACACTGCCAT
GGTATCTTTCAACCATGGTCTTATTCATTTTATGTCACGCTACCATGGTATCT
Found at i:14015918 original size:46 final size:46
Alignment explanation
Indices: 14015564--14015927 Score: 491
Period size: 46 Copynumber: 8.0 Consensus size: 46
14015554 TTATCTTTGA
* * * * * *
14015564 CATGATGCCATAGTGTCATTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
*
14015610 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATT-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
14015655 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*** *
14015701 CACACTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * **
14015747 CACGCTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
14015793 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* ** *
14015838 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
**
14015884 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
14015928 TTCAGAGAGC
Statistics
Matches: 288, Mismatches: 27, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
44 4 0.01
45 79 0.27
46 205 0.71
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:14021694 original size:17 final size:17
Alignment explanation
Indices: 14021669--14021702 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14021659 GATTCGCCTT
* *
14021669 ACCCGTGTGGTCCACAC
1 ACCCATGTGGCCCACAC
14021686 ACCCATGTGGCCCACAC
1 ACCCATGTGGCCCACAC
14021703 GTCCAACTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (17 bp):
ACCCATGTGGCCCACAC
Found at i:14024652 original size:14 final size:14
Alignment explanation
Indices: 14024635--14024665 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14024625 ATAATATAGT
14024635 ATAATGAATAAAGA
1 ATAATGAATAAAGA
*
14024649 ATAATGAGTAAAGA
1 ATAATGAATAAAGA
14024663 ATA
1 ATA
14024666 GAAAAGTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (14 bp):
ATAATGAATAAAGA
Found at i:14024699 original size:4 final size:4
Alignment explanation
Indices: 14024690--14024772 Score: 69
Period size: 4 Copynumber: 20.2 Consensus size: 4
14024680 AGCAAACGTG
* * * *
14024690 AGAA AGAA AGAA AGAA AGAA AGAA AGAT AGAA AGACT A-AC AGAG AGCAA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA-A AGAA AGAA AG-AA
** *
14024739 ACGTG AGAA AGAA AGAA GGAA AGAA AGAA AGAA A
1 A-GAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
14024773 TAAAAAAGGG
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
3 1 0.02
4 57 0.90
5 4 0.06
6 1 0.02
ACGTcount: A:0.65, C:0.05, G:0.27, T:0.04
Consensus pattern (4 bp):
AGAA
Found at i:14025590 original size:47 final size:47
Alignment explanation
Indices: 14025526--14025636 Score: 152
Period size: 47 Copynumber: 2.4 Consensus size: 47
14025516 GACATTGAGT
* * *
14025526 CGATGAGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAATACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
14025573 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAATACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
14025620 CGATGAAATACTATGTG
1 CGATGAAATACTATGTG
14025637 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 53 0.96
48 2 0.04
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (47 bp):
CGATGAAATACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:14036594 original size:21 final size:21
Alignment explanation
Indices: 14036556--14036602 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
14036546 TCCTTTTCAT
*
14036556 AATTT-AAGCTTAATTTCTATC
1 AATTTCAAGCCTAATTTCT-TC
*
14036577 AATTTCAAGCCTAA-TTCTTT
1 AATTTCAAGCCTAATTTCTTC
14036597 AATTTC
1 AATTTC
14036603 TCAACAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.30
21 9 0.39
22 7 0.30
ACGTcount: A:0.32, C:0.17, G:0.04, T:0.47
Consensus pattern (21 bp):
AATTTCAAGCCTAATTTCTTC
Done.