Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 49 of 349
Found at i:14050758 original size:18 final size:20
Alignment explanation
Indices: 14050735--14050774 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
14050725 TGAAAATTTA
*
14050735 AATTTTAGAA-TTA-TTATT
1 AATTTTACAATTTATTTATT
14050753 AATTTTACAATTTATTTATT
1 AATTTTACAATTTATTTATT
14050773 AA
1 AA
14050775 AATATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 3 0.16
20 7 0.37
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTACAATTTATTTATT
Found at i:14054383 original size:17 final size:18
Alignment explanation
Indices: 14054338--14054385 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 18
14054328 AAATAATTAC
14054338 TTTAATTATTAATTATTATA
1 TTTAATT-TT-ATTATTATA
14054358 TTTAATTTTATTATTA-A
1 TTTAATTTTATTATTATA
*
14054375 TTTATTTTTAT
1 TTTAATTTTAT
14054386 AAGTTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 11 0.41
18 7 0.26
19 2 0.07
20 7 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTAATTTTATTATTATA
Found at i:14060914 original size:3 final size:3
Alignment explanation
Indices: 14060906--14060930 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14060896 TAGCATAGAT
14060906 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
14060931 GATAGCGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:14064685 original size:6 final size:6
Alignment explanation
Indices: 14064674--14064708 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
14064664 CTCACTTTAT
*
14064674 TACTAA TACTAA TGCTAA TACTAA TACTAA TACTA
1 TACTAA TACTAA TACTAA TACTAA TACTAA TACTA
14064709 TATGTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (6 bp):
TACTAA
Found at i:14065851 original size:18 final size:18
Alignment explanation
Indices: 14065815--14065851 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14065805 TAAACTTTAC
* *
14065815 AATTTGAATAGCTCGAAT
1 AATTTGAATAACTCAAAT
14065833 AATTTGAATAACTCAAAT
1 AATTTGAATAACTCAAAT
14065851 A
1 A
14065852 GAAAATTCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (18 bp):
AATTTGAATAACTCAAAT
Found at i:14067631 original size:19 final size:18
Alignment explanation
Indices: 14067607--14067652 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
14067597 TAAACAATAT
14067607 ATAATAATAACATGTATAA
1 ATAATAATAACAT-TATAA
* *
14067626 ATAATAATTACATTTTAA
1 ATAATAATAACATTATAA
14067644 A-AATAATAA
1 ATAATAATAA
14067653 TATGAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.29
18 5 0.21
19 12 0.50
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (18 bp):
ATAATAATAACATTATAA
Found at i:14067976 original size:166 final size:166
Alignment explanation
Indices: 14067776--14068102 Score: 394
Period size: 166 Copynumber: 2.0 Consensus size: 166
14067766 AATTTTTCAA
* * *
14067776 ATCTAATCTCTTTATTTATCATTTAAATACTTTT-ATAATATTTAATTTTAATTTTTAA-AAATT
1 ATCTAATCTCTTTAATTAACATTTAAATACTTTTAAT-ATATTTAATTTTAA-TATTAAGAAATT
* * ** * * *
14067839 ATATTACGAATTAAAAATT-TAAAATTATCTTTAAGCTT-AAAATATACCTAACCAATTTCACTT
64 ATATTACAAATTAAAAATTAAAAAATTATAATAAAACTTAAAAAGATACCTAA-CAATTTCA-TT
*
14067902 TCATATTCCAAAATTAT-ATTTTTACTTATTCAAAATTAAT
127 TCAAATTCC-AAATTATCATTTTTACTTATTCAAAATTAAT
* * *
14067942 ATCTCATCTCTTTAATTAACTTTTCAATACTTTTAATATATTTAATTTTAATATTAAGAAATTAT
1 ATCTAATCTCTTTAATTAACATTTAAATACTTTTAATATATTTAATTTTAATATTAAGAAATTAT
* * *
14068007 ATTTCAAATTTAAGATTAAAAAATTATAATAAAACTTAAAAAGATACCTAACAATTTCATTTCAA
66 ATTACAAATTAAAAATTAAAAAATTATAATAAAACTTAAAAAGATACCTAACAATTTCATTTCAA
* * *
14068072 ATTTCAAATTTTCATTTTTACTTATTTAAAA
131 ATTCCAAATTATCATTTTTACTTATTCAAAA
14068103 ATAAAATATC
Statistics
Matches: 136, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
165 11 0.08
166 89 0.65
167 24 0.18
168 12 0.09
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.46
Consensus pattern (166 bp):
ATCTAATCTCTTTAATTAACATTTAAATACTTTTAATATATTTAATTTTAATATTAAGAAATTAT
ATTACAAATTAAAAATTAAAAAATTATAATAAAACTTAAAAAGATACCTAACAATTTCATTTCAA
ATTCCAAATTATCATTTTTACTTATTCAAAATTAAT
Found at i:14068024 original size:27 final size:26
Alignment explanation
Indices: 14067978--14068034 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
14067968 ATACTTTTAA
* * *
14067978 TATATTTAATTTTAATATTAAGAAAT
1 TATATTTAAATTTAAGATTAAAAAAT
14068004 TATATTTCAAATTTAAGATTAAAAAAT
1 TATATTT-AAATTTAAGATTAAAAAAT
14068031 TATA
1 TATA
14068035 ATAAAACTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (26 bp):
TATATTTAAATTTAAGATTAAAAAAT
Found at i:14071747 original size:29 final size:29
Alignment explanation
Indices: 14071715--14071780 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
14071705 ATTACTTTTT
* *
14071715 TATAAAAATAATATAAAAAATCAATTAAA
1 TATAAAAATAAGATAAAAAATAAATTAAA
* * *
14071744 TATAAAAATAGGATGAAAAATAAATTAAT
1 TATAAAAATAAGATAAAAAATAAATTAAA
*
14071773 TATGAAAA
1 TATAAAAA
14071781 CAGAATATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (29 bp):
TATAAAAATAAGATAAAAAATAAATTAAA
Found at i:14073420 original size:28 final size:28
Alignment explanation
Indices: 14073389--14073442 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
14073379 AAAAATTTAA
*
14073389 AAGGATTAAATTA-ATATTTTATTATTTT
1 AAGGATTAAAGTATA-ATTTTATTATTTT
*
14073417 AAGGGTTAAAGTATAATTTTATTATT
1 AAGGATTAAAGTATAATTTTATTATT
14073443 GTATATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (28 bp):
AAGGATTAAAGTATAATTTTATTATTTT
Found at i:14086429 original size:21 final size:21
Alignment explanation
Indices: 14086405--14086477 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 21
14086395 AATGAGAGAA
14086405 AAATTAATATGAAAA-AAATG-T
1 AAATTAA-ATGAAAAGAAA-GAT
14086426 AAATTAAAATGAAAAGAAAGAT
1 AAATT-AAATGAAAAGAAAGAT
* *
14086448 AACTTAAATGAAAAGAGAA-AA
1 AAATTAAATGAAAAGA-AAGAT
14086469 AAATTAAAT
1 AAATTAAAT
14086478 TTAAATGAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
21 33 0.73
22 12 0.27
ACGTcount: A:0.66, C:0.01, G:0.11, T:0.22
Consensus pattern (21 bp):
AAATTAAATGAAAAGAAAGAT
Found at i:14086444 original size:26 final size:25
Alignment explanation
Indices: 14086415--14086632 Score: 111
Period size: 27 Copynumber: 8.8 Consensus size: 25
14086405 AAATTAATAT
14086415 GAAAAAAATGTAAATTAAAATGAAA-A
1 GAAAAAAA--TAAATTAAAATGAAAGA
* *
14086441 G--AAAGATAACTT-AAATGAAAAGA
1 GAAAAAAATAAATTAAAATG-AAAGA
*
14086464 GAAAAAAATTAAATTTAAATGAAATGA
1 GAAAAAAA-TAAATTAAAATGAAA-GA
* *
14086491 GAAAGAAATAAATTAAAATGGAA-A
1 GAAAAAAATAAATTAAAATGAAAGA
** *
14086515 G--AAGGAT-AATTTAAATGAAATGA
1 GAAAAAAATAAATTAAAATGAAA-GA
* * *
14086538 GGAAGAAATTAAATTTAAATG---GCA
1 -GAAAAAAATAAATTAAAATGAAAG-A
* * *
14086562 -AAAAAGAT-AATTTAAATGAAATAA
1 GAAAAAAATAAATTAAAATGAAA-GA
*
14086586 GAAAAAAATAAAATTTAAATGAAATGA
1 GAAAAAAAT-AAATTAAAATGAAA-GA
14086613 GAAAAAAATAAATTAAAATG
1 GAAAAAAATAAATTAAAATG
14086633 GGAAGAAAGA
Statistics
Matches: 148, Mismatches: 23, Indels: 42
0.69 0.11 0.20
Matches are distributed among these distances:
21 26 0.18
22 16 0.11
23 4 0.03
24 9 0.06
25 11 0.07
26 34 0.23
27 48 0.32
ACGTcount: A:0.63, C:0.01, G:0.14, T:0.22
Consensus pattern (25 bp):
GAAAAAAATAAATTAAAATGAAAGA
Found at i:14086455 original size:27 final size:25
Alignment explanation
Indices: 14086415--14086652 Score: 92
Period size: 26 Copynumber: 9.6 Consensus size: 25
14086405 AAATTAATAT
*
14086415 GAAAAAAATGTAAATTAAAATGAAAA
1 GAAAGAAAT-TAAATTAAAATGAAAA
*
14086441 GAAAG--A-TAACTT-AAATGAAAAGA
1 GAAAGAAATTAAATTAAAATG-AAA-A
* *
14086464 GAAAAAAATTAAATTTAAATGAAATGA
1 GAAAGAAATTAAATTAAAATGAAA--A
*
14086491 GAAAGAAA-TAAATTAAAATGGAAA
1 GAAAGAAATTAAATTAAAATGAAAA
* *
14086515 G-AAG-GA-T-AATTTAAATGAAATGA
1 GAAAGAAATTAAATTAAAATGAAA--A
* * *
14086538 GGAAGAAATTAAATTTAAATGGCAAA
1 GAAAGAAATTAAATTAAAAT-GAAAA
*
14086564 -AAAG--A-T-AATTTAAATGAAATAA
1 GAAAGAAATTAAATTAAAATG-AA-AA
* * *
14086586 GAAAAAAATAAAATTTAAATGAAATGA
1 GAAAGAAATTAAATTAAAATGAAA--A
* **
14086613 GAAA-AAAATAAATTAAAATGGGAA
1 GAAAGAAATTAAATTAAAATGAAAA
14086637 GAAAGATAATTTAAAT
1 GAAAGA-AA-TTAAAT
14086653 GAAATGGGGA
Statistics
Matches: 164, Mismatches: 22, Indels: 51
0.69 0.09 0.22
Matches are distributed among these distances:
20 1 0.01
21 26 0.16
22 13 0.08
23 14 0.09
24 11 0.07
25 8 0.05
26 45 0.27
27 43 0.26
28 3 0.02
ACGTcount: A:0.62, C:0.01, G:0.15, T:0.22
Consensus pattern (25 bp):
GAAAGAAATTAAATTAAAATGAAAA
Found at i:14086526 original size:47 final size:47
Alignment explanation
Indices: 14086475--14086606 Score: 185
Period size: 48 Copynumber: 2.8 Consensus size: 47
14086465 AAAAAAATTA
* *
14086475 AATTTAAATGAAATGAGAAAGAAATAAATTAAAATGG-AAAGAAGGAT
1 AATTTAAATGAAATGAGAAAGAAATAAATTTAAATGGCAAA-AAAGAT
*
14086522 AATTTAAATGAAATGAGGAAGAAATTAAATTTAAATGGCAAAAAAGAT
1 AATTTAAATGAAATGAGAAAGAAA-TAAATTTAAATGGCAAAAAAGAT
* *
14086570 AATTTAAATGAAATAAGAAAAAAATAAAATTTAAATG
1 AATTTAAATGAAATGAGAAAGAAAT-AAATTTAAATG
14086607 AAATGAGAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
47 24 0.32
48 49 0.64
49 3 0.04
ACGTcount: A:0.60, C:0.01, G:0.15, T:0.24
Consensus pattern (47 bp):
AATTTAAATGAAATGAGAAAGAAATAAATTTAAATGGCAAAAAAGAT
Found at i:14086549 original size:21 final size:21
Alignment explanation
Indices: 14086478--14086551 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
14086468 AAAATTAAAT
*
14086478 TTAAATGAAATGAGAAAGAAA
1 TTAAATGAAATGAGGAAGAAA
* *
14086499 -TAAATTAAAATGGAAAGAAGGATAA
1 TTAAA-TGAAAT-G-AGGAA-GA-AA
14086524 TTTAAATGAAATGAGGAAGAAA
1 -TTAAATGAAATGAGGAAGAAA
14086546 TTAAAT
1 TTAAAT
14086552 TTAAATGGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
20 4 0.10
21 11 0.27
22 3 0.07
23 5 0.12
24 6 0.15
25 3 0.07
26 5 0.12
27 4 0.10
ACGTcount: A:0.58, C:0.00, G:0.19, T:0.23
Consensus pattern (21 bp):
TTAAATGAAATGAGGAAGAAA
Found at i:14086571 original size:122 final size:121
Alignment explanation
Indices: 14086420--14086715 Score: 461
Period size: 122 Copynumber: 2.4 Consensus size: 121
14086410 AATATGAAAA
* * * *
14086420 AAATGTAAATTAAAATGAAAAGAAAGATAACTTAAATGAAA-AGAGAAAAAAATTAAATTTAAAT
1 AAAT-TAAATTTAAATGGAAA-AAAGATAATTTAAATGAAATA-AGAAAAAAATAAAATTTAAAT
* *
14086484 GAAATGAGAAAGAAATAAATTAAAATGGAAAGAAGGATAATTTAAATGAAATGAGGAAG
63 GAAATGAGAAAAAAATAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGGAAG
14086543 AAATTAAATTTAAATGGCAAAAAAGATAATTTAAATGAAATAAGAAAAAAATAAAATTTAAATGA
1 AAATTAAATTTAAATGG-AAAAAAGATAATTTAAATGAAATAAGAAAAAAATAAAATTTAAATGA
* *
14086608 AATGAGAAAAAAATAAATTAAAATGGGAAGAAAGATAATTTAAATGAAATGGGGAAG
65 AATGAGAAAAAAATAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGGAAG
14086665 AAATTAAATTTAAATGGAAAAAAGATAATTTAAATGAAATAA-AAAATAAAT
1 AAATTAAATTTAAATGGAAAAAAGATAATTTAAATGAAATAAGAAAA-AAAT
14086716 TTAAATGGAA
Statistics
Matches: 162, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
120 4 0.02
121 29 0.18
122 121 0.75
123 8 0.05
ACGTcount: A:0.61, C:0.01, G:0.15, T:0.23
Consensus pattern (121 bp):
AAATTAAATTTAAATGGAAAAAAGATAATTTAAATGAAATAAGAAAAAAATAAAATTTAAATGAA
ATGAGAAAAAAATAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGGAAG
Found at i:14086619 original size:21 final size:23
Alignment explanation
Indices: 14086596--14086722 Score: 77
Period size: 22 Copynumber: 5.5 Consensus size: 23
14086586 GAAAAAAATA
14086596 AAATTTAAATGAAAT-GAGAAA-
1 AAATTTAAATGAAATGGAGAAAG
* *
14086617 AAA-ATAAATTAAAATGGGAAGAAAG
1 AAATTTAAA-TGAAAT-GG-AGAAAG
*
14086642 ATAATTTAAATGAAATGG-GGAAG
1 A-AATTTAAATGAAATGGAGAAAG
* *
14086665 AAA-TTAAATTTAAATGGAAAAAAG
1 AAATTTAAA-TGAAATGG-AGAAAG
* * *
14086689 ATAATTTAAATGAAAT-AAAAAAT
1 A-AATTTAAATGAAATGGAGAAAG
14086712 AAATTTAAATG
1 AAATTTAAATG
14086723 GAAAAAAATA
Statistics
Matches: 83, Mismatches: 11, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
20 4 0.05
21 13 0.16
22 19 0.23
23 12 0.14
24 9 0.11
25 10 0.12
26 12 0.14
27 4 0.05
ACGTcount: A:0.60, C:0.00, G:0.15, T:0.25
Consensus pattern (23 bp):
AAATTTAAATGAAATGGAGAAAG
Found at i:14086626 original size:74 final size:75
Alignment explanation
Indices: 14086522--14086680 Score: 221
Period size: 74 Copynumber: 2.1 Consensus size: 75
14086512 AAAGAAGGAT
* * *
14086522 AATTTAAATGAAATGAGGAAGAAATTAAATTTAAATGGCAAAAAAGATAATTTAAATGAAATAAG
1 AATTTAAATGAAATGAGGAAAAAAATAAATTAAAATGGCAAAAAAGATAATTTAAATGAAATAAG
14086587 AAAAAAATAA
66 AAAAAAATAA
* * **
14086597 AATTTAAATGAAATGA-GAAAAAAATAAATTAAAATGGGAAGAAAGATAATTTAAATGAAATGGG
1 AATTTAAATGAAATGAGGAAAAAAATAAATTAAAATGGCAAAAAAGATAATTTAAATGAAATAAG
* * *
14086661 GAAGAAATTA
66 AAAAAAATAA
14086671 AATTTAAATG
1 AATTTAAATG
14086681 GAAAAAAGAT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
74 58 0.78
75 16 0.22
ACGTcount: A:0.59, C:0.01, G:0.16, T:0.25
Consensus pattern (75 bp):
AATTTAAATGAAATGAGGAAAAAAATAAATTAAAATGGCAAAAAAGATAATTTAAATGAAATAAG
AAAAAAATAA
Found at i:14086648 original size:47 final size:47
Alignment explanation
Indices: 14086588--14086749 Score: 190
Period size: 47 Copynumber: 3.5 Consensus size: 47
14086578 TGAAATAAGA
* * *
14086588 AAAAAATAAAATTTAAATGAAATGAGAAAAAAATAAATTAAAATGGG
1 AAAAAAGATAATTTAAATGAAATGAGAAAAAAATAAATTTAAATGGG
* * * *
14086635 AAGAAAGATAATTTAAATGAAATGGGGAAGAAATTAAATTTAAAT-GG
1 AAAAAAGATAATTTAAATGAAAT-GAGAAAAAAATAAATTTAAATGGG
*
14086682 AAAAAAGATAATTTAAATGAAAT----AAAAAATAAATTTAAATGGA
1 AAAAAAGATAATTTAAATGAAATGAGAAAAAAATAAATTTAAATGGG
* *
14086725 AAAAAATATAAATTAAATGAAATGA
1 AAAAAAGATAATTTAAATGAAATGA
14086750 AATGGAAATT
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 15 0.15
43 22 0.22
47 44 0.45
48 17 0.17
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (47 bp):
AAAAAAGATAATTTAAATGAAATGAGAAAAAAATAAATTTAAATGGG
Found at i:14086662 original size:27 final size:26
Alignment explanation
Indices: 14086451--14086680 Score: 120
Period size: 27 Copynumber: 9.3 Consensus size: 26
14086441 GAAAGATAAC
* * *
14086451 TTAAATGAAAAGAGAAAAAAATTAAAT
1 TTAAATGAAATGGGAAGAAAA-TAAAT
*
14086478 TTAAATGAAATGAGAA-AGAAATAAA-
1 TTAAATGAAATGGGAAGA-AAATAAAT
* *
14086503 TT--A--AAATGGAAAGAAGGAT-AAT
1 TTAAATGAAATGGGAAGAA-AATAAAT
*
14086525 TTAAATGAAATGAGGAAGAAATTAAA-
1 TTAAATGAAATG-GGAAGAAAATAAAT
* *
14086551 TT---T-AAATGGCAA-AAAAGATAAT
1 TTAAATGAAATGGGAAGAAAATA-AAT
** *
14086573 TTAAATGAAATAAGAAAAAAATAAAAT
1 TTAAATGAAATGGGAAGAAAAT-AAAT
* *
14086600 TTAAATGAAATGAGAAAAAAATAAA-
1 TTAAATGAAATGGGAAGAAAATAAAT
14086625 TT--A--AAATGGGAAGAAAGAT-AAT
1 TTAAATGAAATGGGAAGAAA-ATAAAT
*
14086647 TTAAATGAAATGGGGAAGAAATTAAAT
1 TTAAATGAAAT-GGGAAGAAAATAAAT
14086674 TTAAATG
1 TTAAATG
14086681 GAAAAAAGAT
Statistics
Matches: 159, Mismatches: 18, Indels: 52
0.69 0.08 0.23
Matches are distributed among these distances:
20 4 0.03
21 28 0.18
22 16 0.10
23 3 0.02
24 2 0.01
25 5 0.03
26 27 0.17
27 73 0.46
28 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.23
Consensus pattern (26 bp):
TTAAATGAAATGGGAAGAAAATAAAT
Found at i:14086729 original size:21 final size:21
Alignment explanation
Indices: 14086669--14086743 Score: 100
Period size: 21 Copynumber: 3.6 Consensus size: 21
14086659 GGGAAGAAAT
*
14086669 TAAATTTAAATGGAAAAAAGA
1 TAAATTTAAATGGAAAAAAAA
*
14086690 T-AATTTAAATGAAATAAAAAA
1 TAAATTTAAATGGAA-AAAAAA
14086711 TAAATTTAAATGGAAAAAAATA
1 TAAATTTAAATGGAAAAAAA-A
14086733 TAAA-TTAAATG
1 TAAATTTAAATG
14086744 AAATGAAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.25
21 19 0.40
22 17 0.35
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (21 bp):
TAAATTTAAATGGAAAAAAAA
Found at i:14086747 original size:5 final size:5
Alignment explanation
Indices: 14086734--14086806 Score: 74
Period size: 5 Copynumber: 13.6 Consensus size: 5
14086724 AAAAAAATAT
* *
14086734 AAATT AAATG AAATG AAATGG AAATTC AAATG AAATG AAATG AAATTG
1 AAATG AAATG AAATG AAAT-G AAA-TG AAATG AAATG AAATG AAA-TG
*
14086782 AAATTA AAATTG AAATG AAATG AAA
1 AAA-TG AAA-TG AAATG AAATG AAA
14086807 AAAAAAAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
5 37 0.62
6 22 0.37
7 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.15, T:0.25
Consensus pattern (5 bp):
AAATG
Found at i:14086758 original size:27 final size:27
Alignment explanation
Indices: 14086734--14086806 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
14086724 AAAAAAATAT
*
14086734 AAATTAAATGAAATGAAATGGAAATTC
1 AAATTAAATGAAATGAAATGGAAATTA
* *
14086761 AAATGAAATGAAATGAAATTGAAATTA
1 AAATTAAATGAAATGAAATGGAAATTA
14086788 AAATTGAAATGAAATGAAA
1 AAATT-AAATGAAATGAAA
14086807 AAAAAAAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 28 0.68
28 13 0.32
ACGTcount: A:0.59, C:0.01, G:0.15, T:0.25
Consensus pattern (27 bp):
AAATTAAATGAAATGAAATGGAAATTA
Found at i:14086759 original size:43 final size:42
Alignment explanation
Indices: 14086601--14086765 Score: 125
Period size: 43 Copynumber: 3.8 Consensus size: 42
14086591 AAATAAAATT
* * * * *
14086601 TAAATGAAATGAGA-AAAAAATAAATTAAAATGGGAAGAAAGA
1 TAAATTAAATGAAATAAAAAAGAAATTTAAAT-GGAAAAAAGA
* **
14086643 TAATTTAAATGAAATGGGGAAGAAATTAAATTTAAATGGAAAAAAGA
1 TAAATTAAATGAAAT----AA-AAAAGAAATTTAAATGGAAAAAAGA
* * *
14086690 TAATTTAAATGAAATAAAAAATAAATTTAAATGGAAAAAAATA
1 TAAATTAAATGAAATAAAAAAGAAATTTAAATGG-AAAAAAGA
* ** *
14086733 TAAATTAAATGAAATGAAATGGAAATTCAAATG
1 TAAATTAAATGAAATAAAAAAGAAATTTAAATG
14086766 AAATGAAATG
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
42 27 0.26
43 36 0.35
47 26 0.25
48 13 0.13
ACGTcount: A:0.60, C:0.01, G:0.15, T:0.24
Consensus pattern (42 bp):
TAAATTAAATGAAATAAAAAAGAAATTTAAATGGAAAAAAGA
Found at i:14086770 original size:90 final size:89
Alignment explanation
Indices: 14086564--14086770 Score: 204
Period size: 90 Copynumber: 2.2 Consensus size: 89
14086554 AAATGGCAAA
*
14086564 AAAGATAATTTAAATGAAATAAGAAAAAAATAAAATTTAAATGAAATGAGAAAAAAATAAATTAA
1 AAAGA-AA-TTAAATGAAAT-GGAAAAAAAT-AAATTTAAATGAAAT---AAAAAAATAAATTAA
* * *
14086629 AATGGGAAGAAAGATAATTTAAATGAAATGGG
59 AATGGAAAAAAAGATAAATTAAATGAAAT-GG
* * *
14086661 GAAGAAATTAAATTTAAATGGAAAAAAGAT-AATTTAAATGAAAT-AAAAAATAAATTTAAATGG
1 AAAGAAATTAAA-TGAAATGGAAAAAA-ATAAATTTAAATGAAATAAAAAAATAAATTAAAATGG
*
14086724 AAAAAAATATAAATTAAATGAAAT-G
64 AAAAAAAGATAAATTAAATGAAATGG
14086749 AAATGGAAATTCAAATGAAATG
1 AAA--GAAATT-AAATGAAATG
14086771 AAATGAAATT
Statistics
Matches: 95, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
88 3 0.03
90 50 0.53
91 3 0.03
94 14 0.15
95 12 0.13
96 9 0.09
97 4 0.04
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.24
Consensus pattern (89 bp):
AAAGAAATTAAATGAAATGGAAAAAAATAAATTTAAATGAAATAAAAAAATAAATTAAAATGGAA
AAAAAGATAAATTAAATGAAATGG
Found at i:14087353 original size:18 final size:18
Alignment explanation
Indices: 14087330--14087364 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14087320 AATTATAAAT
14087330 TTAAATGAAAACAAAAAC
1 TTAAATGAAAACAAAAAC
*
14087348 TTAAATGAAAATAAAAA
1 TTAAATGAAAACAAAAA
14087365 TTTTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (18 bp):
TTAAATGAAAACAAAAAC
Found at i:14087558 original size:12 final size:13
Alignment explanation
Indices: 14087541--14087569 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
14087531 TTTTAGGCTT
14087541 AAAAAACCC-AAA
1 AAAAAACCCTAAA
14087553 AAAAAACCCTAAA
1 AAAAAACCCTAAA
14087566 AAAA
1 AAAA
14087570 TTGAAATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.76, C:0.21, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAAACCCTAAA
Found at i:14088720 original size:17 final size:18
Alignment explanation
Indices: 14088688--14088723 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14088678 ATATTATTTT
14088688 TTAATTATTTAAAATATA
1 TTAATTATTTAAAATATA
*
14088706 TTAATT-TTTATAATATA
1 TTAATTATTTAAAATATA
14088723 T
1 T
14088724 AACAAGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTATTTAAAATATA
Found at i:14095028 original size:32 final size:32
Alignment explanation
Indices: 14094992--14095056 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
14094982 TGTATGCATT
*
14094992 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATAGATGATGGGCA
14095024 TTAGCATTTTAATAGTTAATAGATGATGGGCA
1 TTAGCATTTTAATAGTTAATAGATGATGGGCA
14095056 T
1 T
14095057 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATAGATGATGGGCA
Found at i:14096566 original size:26 final size:26
Alignment explanation
Indices: 14096537--14096589 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14096527 TTTACAGTTT
*
14096537 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
14096563 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
14096589 T
1 T
14096590 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:14097705 original size:30 final size:30
Alignment explanation
Indices: 14097671--14097730 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14097661 ACTTAATAAG
* *
14097671 CAAATACCTGTAGAATAATAATAAAATTAA
1 CAAATACCTGTAAAATAATAACAAAATTAA
* *
14097701 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTGTAAAATAATAACAAAATTAA
14097731 TAATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.12, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATACCTGTAAAATAATAACAAAATTAA
Found at i:14105045 original size:27 final size:28
Alignment explanation
Indices: 14104991--14105045 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
14104981 TGAATGGAAT
* *
14104991 TTGAATTGGTATGAATAAATGATTAATAC
1 TTGAATTGGTATG-AGAAATGATAAATAC
14105020 TTGAATTGGTATG-GAAATGATAAATA
1 TTGAATTGGTATGAGAAATGATAAATA
14105046 GAAATGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 11 0.46
29 13 0.54
ACGTcount: A:0.42, C:0.02, G:0.20, T:0.36
Consensus pattern (28 bp):
TTGAATTGGTATGAGAAATGATAAATAC
Found at i:14105329 original size:41 final size:41
Alignment explanation
Indices: 14105284--14105364 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
14105274 ACTAATGAAT
* *
14105284 CTCAAACTTTGATTAAATGTGTTGGAAAAATATATCCTATA
1 CTCAAACATTGATTAAATGTGCTGGAAAAATATATCCTATA
14105325 CTCAAACATTGATTAAATGTGCTGGAAAAATATATCCTAT
1 CTCAAACATTGATTAAATGTGCTGGAAAAATATATCCTAT
14105365 CTCTTATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.35
Consensus pattern (41 bp):
CTCAAACATTGATTAAATGTGCTGGAAAAATATATCCTATA
Found at i:14112925 original size:19 final size:19
Alignment explanation
Indices: 14112901--14112939 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
14112891 ATTCATTGAT
*
14112901 TTACCCTTAATATTAACCA
1 TTACCCTCAATATTAACCA
14112920 TTACCCTCAATATTAACCA
1 TTACCCTCAATATTAACCA
14112939 T
1 T
14112940 AACTCATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (19 bp):
TTACCCTCAATATTAACCA
Found at i:14118326 original size:3 final size:3
Alignment explanation
Indices: 14118320--14118360 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
14118310 TTTAGCCACT
*
14118320 TTA TTA TT- TTG TTTA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14118361 CCTATTTGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
2 4 0.12
3 28 0.82
4 2 0.06
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:14118927 original size:16 final size:16
Alignment explanation
Indices: 14118908--14118938 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14118898 TACACCCATA
*
14118908 TATATGTACATATTTT
1 TATATATACATATTTT
14118924 TATATATACATATTT
1 TATATATACATATTT
14118939 ATCGTTTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATATACATATTTT
Found at i:14120289 original size:21 final size:21
Alignment explanation
Indices: 14120250--14120289 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14120240 TTTTATTATT
*
14120250 GTATTATTATTAAAGATATAA
1 GTATTATTATTAAACATATAA
*
14120271 GTATTATTATTCAACATAT
1 GTATTATTATTAAACATAT
14120290 TTTTTATAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (21 bp):
GTATTATTATTAAACATATAA
Found at i:14123297 original size:13 final size:13
Alignment explanation
Indices: 14123261--14123298 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
14123251 TATTTAAGAA
14123261 ATAATAATTATAAT
1 ATAATAA-TATAAT
*
14123275 -TAAAAATATAAT
1 ATAATAATATAAT
14123287 ATAATAATATAA
1 ATAATAATATAA
14123299 AGTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATATAAT
Found at i:14123304 original size:26 final size:26
Alignment explanation
Indices: 14123261--14123313 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14123251 TATTTAAGAA
*
14123261 ATAATAATTATAATTAAAA-ATATAAT
1 ATAATAATTATAAGTAAAATA-ATAAT
14123287 ATAATAA-TATAAAGTAAAATAATAAT
1 ATAATAATTAT-AAGTAAAATAATAAT
14123313 A
1 A
14123314 AAAAGAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 20 0.83
27 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (26 bp):
ATAATAATTATAAGTAAAATAATAAT
Found at i:14124225 original size:6 final size:6
Alignment explanation
Indices: 14124214--14124248 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
14124204 TTTGTGTACC
*
14124214 GTTACT GTTACT GTTACT GTTATT GTTACT GTTAC
1 GTTACT GTTACT GTTACT GTTACT GTTACT GTTAC
14124249 GGTGTATTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.51
Consensus pattern (6 bp):
GTTACT
Found at i:14126380 original size:117 final size:117
Alignment explanation
Indices: 14126168--14126412 Score: 413
Period size: 117 Copynumber: 2.1 Consensus size: 117
14126158 GCCTATTTAT
*
14126168 TGTATTAATTACAACAAAATTAATTTTTTCCCTTTTTTAAGATGTTGACTCTAATTTTTTGGACT
1 TGTACTAATTACAACAAAATTAATTTTTTCCCTTTTTTAAGATGTTGACTCTAATTTTTTGGACT
*
14126233 AAATTGATTATAATAATAATTTAAGATGTTGAAAATGAAGATATTTGGAAAA
66 AAATTGATTATAATAATAATTTAAGATGTTGAAAATGAAGATATTTAGAAAA
* *
14126285 TGTACTAATTATAACAAAATTAA-TTTTTCTCTTTTTTAAGATGTTGACTCTAATTTTTTGGACT
1 TGTACTAATTACAACAAAATTAATTTTTTCCCTTTTTTAAGATGTTGACTCTAATTTTTTGGACT
*
14126349 AAATTGATTA-AACCTATTAATTTAAGATGTTGAAAATGAAGATATTTAGAAAA
66 AAATTGATTATAA--TAATAATTTAAGATGTTGAAAATGAAGATATTTAGAAAA
14126402 TGTACTAATTA
1 TGTACTAATTA
14126413 ATTTTTTAGA
Statistics
Matches: 121, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
115 2 0.02
116 50 0.41
117 69 0.57
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.43
Consensus pattern (117 bp):
TGTACTAATTACAACAAAATTAATTTTTTCCCTTTTTTAAGATGTTGACTCTAATTTTTTGGACT
AAATTGATTATAATAATAATTTAAGATGTTGAAAATGAAGATATTTAGAAAA
Found at i:14127889 original size:22 final size:22
Alignment explanation
Indices: 14127836--14127903 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 22
14127826 TTATTACACA
14127836 TTATATTAAAAAATAAATTAATTAT
1 TTATATTAAAAAAT---TTAATTAT
* *
14127861 TTTTATTAAAAAATTTATTTAT
1 TTATATTAAAAAATTTAATTAT
14127883 TTATATTATTAAAAA-TTAATT
1 TTATATTA--AAAAATTTAATT
14127904 CATAAAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
22 14 0.38
23 5 0.14
24 5 0.14
25 13 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTATATTAAAAAATTTAATTAT
Found at i:14136159 original size:22 final size:23
Alignment explanation
Indices: 14136116--14136159 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14136106 TTAATCTTTT
14136116 TACTTTTATTTGAAGTAATTTAC
1 TACTTTTATTTGAAGTAATTTAC
14136139 TACTTTTACTTT-AA-TAATTTA
1 TACTTTTA-TTTGAAGTAATTTA
14136160 AAAATACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 10 0.50
24 3 0.15
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.55
Consensus pattern (23 bp):
TACTTTTATTTGAAGTAATTTAC
Found at i:14137925 original size:21 final size:19
Alignment explanation
Indices: 14137886--14137925 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
14137876 ATTTATCTCT
*
14137886 TAATATTTAAATTTTTATA
1 TAATATTTAAATATTTATA
14137905 TAATATTTAGAACTATTTATA
1 TAATATTTA-AA-TATTTATA
14137926 GTCCCTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (19 bp):
TAATATTTAAATATTTATA
Found at i:14139660 original size:30 final size:30
Alignment explanation
Indices: 14139625--14139682 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14139615 AAATTTTTTA
*
14139625 TTTTCCCC-CAAACTTTTTACTCCATCCCAC
1 TTTTCCCCTAAAAC-TTTTACTCCATCCCAC
*
14139655 TTTTCCCCTAAAACTTTTACTCCCTCCC
1 TTTTCCCCTAAAACTTTTACTCCATCCC
14139683 CATCCCACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.19, C:0.43, G:0.00, T:0.38
Consensus pattern (30 bp):
TTTTCCCCTAAAACTTTTACTCCATCCCAC
Found at i:14140859 original size:30 final size:30
Alignment explanation
Indices: 14140825--14140900 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 30
14140815 CAAATGAGTT
14140825 TAAAATTATTAAAATTATTTTTTATTTTTA
1 TAAAATTATTAAAATTATTTTTTATTTTTA
14140855 TAAAATTA--AAAA-TATTTTTTATTTTTA
1 TAAAATTATTAAAATTATTTTTTATTTTTA
* *
14140882 TAAGATTATTAAGATTATT
1 TAAAATTATTAAAATTATT
14140901 AAATGCATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 22 0.54
28 4 0.10
29 3 0.07
30 12 0.29
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (30 bp):
TAAAATTATTAAAATTATTTTTTATTTTTA
Found at i:14141011 original size:23 final size:23
Alignment explanation
Indices: 14140984--14141027 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
14140974 GCCGTCTCCA
14140984 ATCTTCATCCCCATTATTTCTCG
1 ATCTTCATCCCCATTATTTCTCG
*
14141007 ATCTTCATCCTCATTATTTCT
1 ATCTTCATCCCCATTATTTCT
14141028 TCTTTCCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.32, G:0.02, T:0.48
Consensus pattern (23 bp):
ATCTTCATCCCCATTATTTCTCG
Found at i:14141632 original size:22 final size:22
Alignment explanation
Indices: 14141563--14141636 Score: 78
Period size: 22 Copynumber: 3.2 Consensus size: 22
14141553 CAGACACTTG
14141563 AAAACCCAGAAATTTAAAAACAA
1 AAAACCCAGAAATTTAAAAAC-A
14141586 AAAATCCCCCAGAAA-TTAAATAACA
1 AAAA---CCCAGAAATTTAAA-AACA
* *
14141611 AAAACCCAAAAATTTTAAAACA
1 AAAACCCAGAAATTTAAAAACA
14141633 AAAA
1 AAAA
14141637 ACCCTTTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
22 15 0.34
23 8 0.18
25 10 0.23
26 11 0.25
ACGTcount: A:0.64, C:0.19, G:0.03, T:0.15
Consensus pattern (22 bp):
AAAACCCAGAAATTTAAAAACA
Found at i:14141640 original size:23 final size:23
Alignment explanation
Indices: 14141563--14141640 Score: 88
Period size: 23 Copynumber: 3.3 Consensus size: 23
14141553 CAGACACTTG
14141563 AAAACCCAGAAATTTAAAAACAA
1 AAAACCCAGAAATTTAAAAACAA
14141586 AAAATCCCCCAGAAA-TTAAATAAC-A
1 AAAA---CCCAGAAATTTAAA-AACAA
* *
14141611 AAAACCCAAAAATTTTAAAACAA
1 AAAACCCAGAAATTTAAAAACAA
14141634 AAAACCC
1 AAAACCC
14141641 TTTTTTTTGT
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
22 10 0.21
23 16 0.34
25 10 0.21
26 11 0.23
ACGTcount: A:0.62, C:0.22, G:0.03, T:0.14
Consensus pattern (23 bp):
AAAACCCAGAAATTTAAAAACAA
Found at i:14143701 original size:20 final size:22
Alignment explanation
Indices: 14143661--14143702 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
14143651 ATTATTCATA
*
14143661 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
14143683 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
14143703 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:14143803 original size:15 final size:15
Alignment explanation
Indices: 14143783--14143839 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
14143773 ATTCAATATT
14143783 AATATTTTAATAATA
1 AATATTTTAATAATA
*
14143798 AATATTTATTGCAATTATA
1 AATA-TT-TT--AATAATA
*
14143817 AATATATTAATAATA
1 AATATTTTAATAATA
*
14143832 AATGTTTT
1 AATATTTT
14143840 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:14145646 original size:21 final size:21
Alignment explanation
Indices: 14145600--14145651 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
14145590 TTAATTATCA
* *
14145600 TTATAGTTTAGGGTTTATAGT
1 TTATGGTTAAGGGTTTATAGT
*
14145621 ATATGGTTAAGGGTTTA-ATGT
1 TTATGGTTAAGGGTTTATA-GT
14145642 TTATGAGTTA
1 TTATG-GTTA
14145652 CTATTGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATAGT
Found at i:14145681 original size:15 final size:15
Alignment explanation
Indices: 14145661--14145697 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
14145651 ACTATTGTAA
14145661 AGTTTATGGATTATG
1 AGTTTATGGATTATG
*
14145676 AGTTTAGGGATTATG
1 AGTTTATGGATTATG
14145691 -GTTTATG
1 AGTTTATG
14145698 ATTTATGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (15 bp):
AGTTTATGGATTATG
Found at i:14145731 original size:14 final size:14
Alignment explanation
Indices: 14145710--14145809 Score: 58
Period size: 14 Copynumber: 7.1 Consensus size: 14
14145700 TTATGTGTTA
14145710 AAGG-TTAGGGTTT
1 AAGGTTTAGGGTTT
* *
14145723 AAGTTTTAGGGGGTT
1 AAGGTTTA-GGGTTT
** *
14145738 GGGGTTTAAGGTTT
1 AAGGTTTAGGGTTT
*
14145752 AAGGTTAAGGGTTT
1 AAGGTTTAGGGTTT
* * *
14145766 ATGTTTTATGGTTT
1 AAGGTTTAGGGTTT
* *
14145780 AAGGTGTAGGGGTT
1 AAGGTTTAGGGTTT
* *
14145794 AGGGAATTAGGGTTT
1 AAGG-TTTAGGGTTT
14145809 A
1 A
14145810 GATTAATTAG
Statistics
Matches: 60, Mismatches: 24, Indels: 4
0.68 0.27 0.05
Matches are distributed among these distances:
13 3 0.05
14 39 0.65
15 18 0.30
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (14 bp):
AAGGTTTAGGGTTT
Found at i:14145737 original size:22 final size:20
Alignment explanation
Indices: 14145710--14145778 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 20
14145700 TTATGTGTTA
14145710 AAGGTTAGGGTTTAAGTTTT
1 AAGGTTAGGGTTTAAGTTTT
* * *
14145730 AGGGGGTTGGGGTTTAAGGTTT
1 A--AGGTTAGGGTTTAAGTTTT
*
14145752 AAGGTTAAGGGTTTATGTTTT
1 AAGGTT-AGGGTTTAAGTTTT
*
14145773 ATGGTT
1 AAGGTT
14145779 TAAGGTGTAG
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
20 5 0.13
21 16 0.42
22 17 0.45
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.43
Consensus pattern (20 bp):
AAGGTTAGGGTTTAAGTTTT
Found at i:14145810 original size:7 final size:7
Alignment explanation
Indices: 14145714--14145810 Score: 50
Period size: 7 Copynumber: 13.6 Consensus size: 7
14145704 GTGTTAAAGG
14145714 TTAGGGT
1 TTAGGGT
* *
14145721 TTAAGTT
1 TTAGGGT
*
14145728 TTAGGGGG
1 TTA-GGGT
*
14145736 TTGGGGT
1 TTAGGGT
*
14145743 TTAAGGT
1 TTAGGGT
*
14145750 TTAAGGT
1 TTAGGGT
*
14145757 TAAGGGT
1 TTAGGGT
* *
14145764 TTATGTT
1 TTAGGGT
*
14145771 TTATGGT
1 TTAGGGT
*
14145778 TTAAGGT
1 TTAGGGT
* *
14145785 GTAGGGG
1 TTAGGGT
*
14145792 TTAGGGAA
1 TTAGGG-T
14145800 TTAGGGT
1 TTAGGGT
14145807 TTAG
1 TTAG
14145811 ATTAATTAGT
Statistics
Matches: 66, Mismatches: 22, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
7 57 0.86
8 9 0.14
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (7 bp):
TTAGGGT
Found at i:14152705 original size:20 final size:21
Alignment explanation
Indices: 14152652--14152713 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 21
14152642 TAAATTTCAA
14152652 AAATTAAACATAATATAATATTT
1 AAATTAAA-ATAA-ATAATATTT
* *
14152675 AAAATAGAAATAAATATTATTT
1 AAATTA-AAATAAATAATATTT
14152697 -AATTAAAATAAAATAAT
1 AAATTAAAAT-AAATAAT
14152714 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 4 0.12
21 10 0.30
22 8 0.24
23 9 0.27
24 2 0.06
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
AAATTAAAATAAATAATATTT
Found at i:14152800 original size:44 final size:43
Alignment explanation
Indices: 14152732--14152826 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 43
14152722 AAGTTATGAT
*
14152732 TTTTAGCGGCATTTGTGGGAAAAGCGTCGCTAAAGGTCAGGAAC
1 TTTTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCAGG-AC
** * * *
14152776 TTTTAGCGGTGTTTGTGGGGAAAGCGCCGCTAAATGTCATGAC
1 TTTTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCAGGAC
14152819 TTTTAGCG
1 TTTTAGCG
14152827 ACTTTTTTTC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
43 10 0.22
44 35 0.78
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.29
Consensus pattern (43 bp):
TTTTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCAGGAC
Found at i:14154493 original size:21 final size:21
Alignment explanation
Indices: 14154449--14154493 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14154439 AAAATTGCTG
* * *
14154449 TTTTTATTGTTTTCTTGTTGT
1 TTTTTACTGTTTTCTTGCTAT
*
14154470 TTTTTACTGTTTTGTTGCTAT
1 TTTTTACTGTTTTCTTGCTAT
14154491 TTT
1 TTT
14154494 CTTCACTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.07, C:0.07, G:0.13, T:0.73
Consensus pattern (21 bp):
TTTTTACTGTTTTCTTGCTAT
Found at i:14159890 original size:10 final size:10
Alignment explanation
Indices: 14159875--14159914 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
14159865 AAAATCTTAG
14159875 ATTAAAAAAT
1 ATTAAAAAAT
14159885 ATTAAAAAAT
1 ATTAAAAAAT
*
14159895 CTGTAAAAAAT
1 AT-TAAAAAAT
14159906 -TTAAAAAAT
1 ATTAAAAAAT
14159915 CATATTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 8 0.29
10 12 0.43
11 8 0.29
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
ATTAAAAAAT
Found at i:14159909 original size:20 final size:21
Alignment explanation
Indices: 14159877--14159915 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
14159867 AATCTTAGAT
14159877 TAAAAAATATTAAAAAATCTG
1 TAAAAAATATTAAAAAATCTG
14159898 TAAAAAAT-TTAAAAAATC
1 TAAAAAATATTAAAAAATC
14159916 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (21 bp):
TAAAAAATATTAAAAAATCTG
Found at i:14161973 original size:20 final size:19
Alignment explanation
Indices: 14161923--14161973 Score: 70
Period size: 17 Copynumber: 2.7 Consensus size: 19
14161913 AATAGTTCTG
14161923 TCTCTTGATGAACAATTGTA
1 TCTCTTG-TGAACAATTGTA
14161943 TCT-TT-TGAACAATTGTA
1 TCTCTTGTGAACAATTGTA
14161960 TCTCTTGGTGAACA
1 TCTCTT-GTGAACA
14161974 TATTCATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 15 0.54
18 2 0.07
19 2 0.07
20 9 0.32
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (19 bp):
TCTCTTGTGAACAATTGTA
Found at i:14170343 original size:22 final size:22
Alignment explanation
Indices: 14170318--14170361 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14170308 AGTGCTAAGT
**
14170318 AGAGAGCATTAAAGTGCTGAAC
1 AGAGAGCAACAAAGTGCTGAAC
*
14170340 AGAGAGCAACGAAGTGCTGAAC
1 AGAGAGCAACAAAGTGCTGAAC
14170362 CCATACAAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.30, T:0.14
Consensus pattern (22 bp):
AGAGAGCAACAAAGTGCTGAAC
Found at i:14175591 original size:13 final size:13
Alignment explanation
Indices: 14175573--14175603 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14175563 CTGCCCGCCC
*
14175573 ATATTATTTTTTT
1 ATATTATTTTTAT
14175586 ATATTATTTTTAT
1 ATATTATTTTTAT
14175599 ATATT
1 ATATT
14175604 TTAAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATATTATTTTTAT
Found at i:14175762 original size:30 final size:30
Alignment explanation
Indices: 14175728--14175790 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
14175718 ACTTAACAAG
* *
14175728 CAAATGTCTCTAAAATAATAATAACATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
14175758 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
14175788 CAA
1 CAA
14175791 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:14176283 original size:96 final size:96
Alignment explanation
Indices: 14176165--14176455 Score: 546
Period size: 96 Copynumber: 3.0 Consensus size: 96
14176155 GCAGTACTAT
*
14176165 CATATATGCTTAGTCTTTTATATACACCCACGCATACACCGATCCGTTTCCATTCCAGCATAAGT
1 CATATATGCTTAGTCTTATATATACACCCACGCATACACCGATCCGTTTCCATTCCAGCATAAGT
14176230 GTGTACGTAGGAGTGGGTGAGCCTATCATTC
66 GTGTACGTAGGAGTGGGTGAGCCTATCATTC
*
14176261 CATATATGCTTAGTCTTATATATACACCCACGCATACACCGATCCGTTTCCATTCCAGCATGAGT
1 CATATATGCTTAGTCTTATATATACACCCACGCATACACCGATCCGTTTCCATTCCAGCATAAGT
*
14176326 GTGTACGTAGGAGTGCGTGAGCCTATCATTC
66 GTGTACGTAGGAGTGGGTGAGCCTATCATTC
*
14176357 CATGTATGCTTAGTCTTATATATACACCCACGCATACACCGATCCGTTTCCATTCCAGCATAAGT
1 CATATATGCTTAGTCTTATATATACACCCACGCATACACCGATCCGTTTCCATTCCAGCATAAGT
14176422 GTGTACGTAGGAGTGGGTGAGCCTATCATTC
66 GTGTACGTAGGAGTGGGTGAGCCTATCATTC
14176453 CAT
1 CAT
14176456 GCACATGGCA
Statistics
Matches: 189, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 189 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (96 bp):
CATATATGCTTAGTCTTATATATACACCCACGCATACACCGATCCGTTTCCATTCCAGCATAAGT
GTGTACGTAGGAGTGGGTGAGCCTATCATTC
Found at i:14177006 original size:31 final size:31
Alignment explanation
Indices: 14176970--14177029 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
14176960 TTAATTTTAC
* *
14176970 CAATTTTAGTCTTTTTA-TTTTTCGAATTGAT
1 CAATTTTAGTCTCTATACTTTTT-GAATTGAT
14177001 CAATTTTAGTCTCTATACTTTTTGAATTG
1 CAATTTTAGTCTCTATACTTTTTGAATTG
14177030 GGAACCCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (31 bp):
CAATTTTAGTCTCTATACTTTTTGAATTGAT
Found at i:14181245 original size:27 final size:27
Alignment explanation
Indices: 14181215--14181356 Score: 148
Period size: 27 Copynumber: 5.2 Consensus size: 27
14181205 GTGACGAAGT
*
14181215 CACCAGATACAGATATTGTGGCAGAAC
1 CACCAGATACAGATATTGTGGCAGAGC
*
14181242 CACCAGA-ACAGATATATGTGGTAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
14181269 CACCAGAT-CAAATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
14181296 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
14181323 CACCAGAT-TAGATAAATTGTGGCATAGC
1 CACCAGATACAGAT--ATTGTGGCAGAGC
14181351 CACCAG
1 CACCAG
14181357 GATGCTTCCT
Statistics
Matches: 96, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.10
27 66 0.69
28 18 0.19
29 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:14181299 original size:54 final size:54
Alignment explanation
Indices: 14181215--14181356 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
14181205 GTGACGAAGT
* * *
14181215 CACCAGATACAGAT-ATTGTGGCAGAACCACCAGAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
14181269 CACCAGATCAAATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
14181323 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
14181357 GATGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 4 0.05
54 55 0.70
55 20 0.25
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:14182992 original size:26 final size:26
Alignment explanation
Indices: 14182956--14183010 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
14182946 TGAATGCCCT
14182956 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
14182982 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
14183008 TCA
1 TCA
14183011 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:14186262 original size:18 final size:16
Alignment explanation
Indices: 14186239--14186273 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
14186229 AATTTAACTT
14186239 TAATTAAATTATTTAAAA
1 TAATT-AATT-TTTAAAA
14186257 TAATTAATTTTTAAAA
1 TAATTAATTTTTAAAA
14186273 T
1 T
14186274 TATAAACGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTAATTTTTAAAA
Found at i:14190433 original size:6 final size:6
Alignment explanation
Indices: 14190422--14190453 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
14190412 ATATTCTGGT
*
14190422 GACCAA GACCAA GACCAA GACCAA GACGAA GA
1 GACCAA GACCAA GACCAA GACCAA GACCAA GA
14190454 AGGAGAAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.50, C:0.28, G:0.22, T:0.00
Consensus pattern (6 bp):
GACCAA
Found at i:14193071 original size:23 final size:25
Alignment explanation
Indices: 14193034--14193085 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 25
14193024 TTTAGACAGT
* *
14193034 AAAAGAAGAATAGAA-AAG-GAAGA
1 AAAAGAAGAAGAGAAGAAGAAAAGA
*
14193057 AAAAGAAGAGGAGAAGAAGAAAAGA
1 AAAAGAAGAAGAGAAGAAGAAAAGA
14193082 AAAA
1 AAAA
14193086 ATGGAGATGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 13 0.54
24 3 0.12
25 8 0.33
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (25 bp):
AAAAGAAGAAGAGAAGAAGAAAAGA
Found at i:14198476 original size:21 final size:21
Alignment explanation
Indices: 14198452--14198501 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
14198442 AGCTTCCTAC
14198452 TGAGTTGGGGTAAT-CTCTTGT
1 TGAGTTGGGGT-ATCCTCTTGT
*
14198473 TGAGTTGGGGTATCCTTTTGT
1 TGAGTTGGGGTATCCTCTTGT
14198494 TGAGTTGG
1 TGAGTTGG
14198502 AGCAACCACT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.12, C:0.08, G:0.36, T:0.44
Consensus pattern (21 bp):
TGAGTTGGGGTATCCTCTTGT
Found at i:14201028 original size:186 final size:185
Alignment explanation
Indices: 14200675--14201246 Score: 806
Period size: 186 Copynumber: 3.1 Consensus size: 185
14200665 AAACCTAGGC
* * *
14200675 AATGGTAGACAATAACCAATACAAAAACAATAT-AATACAAAAAAATCCATTTCTGTCATGTACA
1 AATGGTAGACAATAACCAATACAAAAATAATTTAAATA-AAAAAAATCTATTTCTGTCATGTACA
* * *
14200739 ATAATCAAACAATAATCATGCACTTTAATCCAAAATAGTATCATGAACATGGCAAACAATAACCA
65 ATAACCAAACAATAATCATGCACTTTAATCCAAAATAGTATCATGCACATGGCAGACAATAACCA
* * * *
14200804 ACCAATAATCCAAAATAGAAATTGATTTGTCACTTTCCTAAGGCAATTAGTATGCA
130 AACAATAATCCAAAATAGGAACTGATTTGTCTCTTTCCTAAGGCAATTAGTATGCA
* *
14200860 AATGGTAGGCAATAGCCAATACAAAAATAATTTAACATAAAAAAAAT-TATTTCTGTCATGTACA
1 AATGGTAGACAATAACCAATACAAAAATAATTTAA-ATAAAAAAAATCTATTTCTGTCATGTACA
* * *
14200924 ATAACCAAACAATAATCATGCACTTTTTACCCAAAATAGTATCATGCACATGGCAGACAATAGCC
65 ATAACCAAACAATAATCATGCAC-TTTAATCCAAAATAGTATCATGCACATGGCAGACAATAACC
*
14200989 AAACAATAATCCAAAATAGGGACTGATTTGTCTCTTTCCTAAGGCAATTAGTATGCA
129 AAACAATAATCCAAAATAGGAACTGATTTGTCTCTTTCCTAAGGCAATTAGTATGCA
* * * *
14201046 AATGGTAGACAATAACCAATACAAAAATAGTTTTAAACAAAAAAATTCTATTTCTGTCATGTAAA
1 AATGGTAGACAATAACCAATACAAAAATA-ATTTAAATAAAAAAAATCTATTTCTGTCATGTACA
* * *
14201111 ATAACCAAACAATAATCATGCACTTTAATCCTAAATAGTATCATACAAATGGCAGACAATAACCA
65 ATAACCAAACAATAATCATGCACTTTAATCCAAAATAGTATCATGCACATGGCAGACAATAACCA
* * * * * * * * *
14201176 AACAGTAATCTAAATTAGGAACTAATTTATCTATTTCTTATGGCAATTATTATGCA
130 AACAATAATCCAAAATAGGAACTGATTTGTCTCTTTCCTAAGGCAATTAGTATGCA
14201232 AATGGTAGACAATAA
1 AATGGTAGACAATAA
14201247 GTTTACAAAA
Statistics
Matches: 344, Mismatches: 38, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
185 67 0.19
186 230 0.67
187 47 0.14
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.27
Consensus pattern (185 bp):
AATGGTAGACAATAACCAATACAAAAATAATTTAAATAAAAAAAATCTATTTCTGTCATGTACAA
TAACCAAACAATAATCATGCACTTTAATCCAAAATAGTATCATGCACATGGCAGACAATAACCAA
ACAATAATCCAAAATAGGAACTGATTTGTCTCTTTCCTAAGGCAATTAGTATGCA
Found at i:14206244 original size:47 final size:45
Alignment explanation
Indices: 14206173--14206527 Score: 243
Period size: 47 Copynumber: 7.6 Consensus size: 45
14206163 TGATTTGTGC
** * *
14206173 GCCAGTGCCAGACATGTCTAGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* ** *
14206219 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACAAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATATGAGA
* * * *
14206267 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* * * *
14206313 GCCAGTGTAAAACCATGTCTGGGACATGACATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGC-CACATATGAGA
* * *
14206361 GCCAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATATGAGA
* * * * *
14206408 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTTAGAGT-T--GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CACA-TATGAGA
* * * *
14206452 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--ATATGAGA
* *
14206500 GCCAGTGTAATACCATGTTTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
14206528 GCATTGGTAA
Statistics
Matches: 239, Mismatches: 51, Indels: 35
0.74 0.16 0.11
Matches are distributed among these distances:
44 29 0.12
45 4 0.02
46 38 0.16
47 94 0.39
48 56 0.23
49 18 0.08
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGA
Found at i:14206346 original size:94 final size:92
Alignment explanation
Indices: 14206182--14206527 Score: 346
Period size: 94 Copynumber: 3.7 Consensus size: 92
14206172 CGCCAGTGCC
* * * * *
14206182 AGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATG
1 AGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGACAT-
* *
14206247 GCATCGGCATCCAGACAAGGGCTAGTGTA
65 GCATCGGCAT-CAGAGAAGTGCTAGTGTA
* *
14206276 AGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAAACCATGTCTGGGACATG
1 AGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGACATG
*
14206341 ACATCGGCA-CAGAGATGAGTGCCAGTGTA
66 -CATCGGCATCAGAGA--AGTGCTAGTGTA
* * *
14206370 AGATATGTCTGGGACATGCATCGGCC-TCGAC-A-GAGATAGCCAGTGTAAGA-CGTGTCTGGGA
1 AGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGTCTGGGA
* * **
14206431 CACGCATCGGC-TTAGAGTTGTGCTAGTGTA
62 CATGCATCGGCATCAGAGAAGTGCTAGTGTA
* * * *
14206461 AGACATGTCTGAGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAATACCATGTTTGGGAC
1 AGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTCTGGGAC
14206525 ATG
63 ATG
14206528 GCATTGGTAA
Statistics
Matches: 210, Mismatches: 27, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
91 31 0.15
92 17 0.08
93 30 0.14
94 117 0.56
95 15 0.07
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (92 bp):
AGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGACATG
CATCGGCATCAGAGAAGTGCTAGTGTA
Found at i:14214164 original size:13 final size:13
Alignment explanation
Indices: 14214148--14214180 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14214138 TTTAATTAAA
*
14214148 TTAGTTAATTAGT
1 TTAGATAATTAGT
14214161 TTAGATAATTAGT
1 TTAGATAATTAGT
14214174 TTA-ATAA
1 TTAGATAA
14214181 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:14221929 original size:11 final size:11
Alignment explanation
Indices: 14221913--14221979 Score: 55
Period size: 11 Copynumber: 5.6 Consensus size: 11
14221903 TTATTTACTC
14221913 TTATTTTTATT
1 TTATTTTTATT
14221924 TTATTTTTATT
1 TTATTTTTATT
14221935 TT-TCTTTTGATTT
1 TTAT-TTTT-A-TT
*
14221948 TTATTTTCATT
1 TTATTTTTATT
*
14221959 TCAATTTTATTATT
1 T-TA-TTT-TTATT
14221973 TTATTTT
1 TTATTTT
14221980 GAAAGACATA
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
10 1 0.02
11 21 0.47
12 6 0.13
13 11 0.24
14 6 0.13
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:14221948 original size:17 final size:17
Alignment explanation
Indices: 14221896--14221979 Score: 73
Period size: 17 Copynumber: 4.9 Consensus size: 17
14221886 CTCCTATTTG
*
14221896 TTTT-TTTTTA-TTTAC
1 TTTTATTTTTATTTTAT
*
14221911 TCTTATTTTTATTTTAT
1 TTTTATTTTTATTTTAT
*
14221928 TTTTATTTTTCTTTTGAT
1 TTTTATTTTTATTTT-AT
* * *
14221946 TTTTATTTTCATTTCAA
1 TTTTATTTTTATTTTAT
14221963 TTTTATTATTTTATTTT
1 TTTTA-T-TTTTATTTT
14221980 GAAAGACATA
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
15 3 0.06
16 6 0.11
17 23 0.43
18 15 0.28
19 7 0.13
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATTTTAT
Found at i:14221949 original size:7 final size:6
Alignment explanation
Indices: 14221913--14221959 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
14221903 TTATTTACTC
* * *
14221913 TTATTT TTA-TT TTATTT TTATTT TTCTTT TGATTT TTATTT TCATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
14221960 CAATTTTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:14224893 original size:13 final size:13
Alignment explanation
Indices: 14224877--14224909 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14224867 TTTAATTAAA
*
14224877 TTAGTTAATTAGT
1 TTAGATAATTAGT
14224890 TTAGATAATTAGT
1 TTAGATAATTAGT
14224903 TTA-ATAA
1 TTAGATAA
14224910 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:14234556 original size:17 final size:18
Alignment explanation
Indices: 14234534--14234568 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
14234524 GTAAATAAAC
14234534 ATAAAAGAAT-AAAGAAA
1 ATAAAAGAATAAAAGAAA
14234551 ATAAAAGAATAAAAGAAA
1 ATAAAAGAATAAAAGAAA
14234569 GAAATGAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (18 bp):
ATAAAAGAATAAAAGAAA
Found at i:14234561 original size:8 final size:8
Alignment explanation
Indices: 14234534--14234567 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
14234524 GTAAATAAAC
14234534 ATAAAAGA
1 ATAAAAGA
*
14234542 ATAAAGAAA
1 ATAAA-AGA
14234551 ATAAAAGA
1 ATAAAAGA
14234559 ATAAAAGA
1 ATAAAAGA
14234567 A
1 A
14234568 AGAAATGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
ATAAAAGA
Found at i:14235885 original size:44 final size:44
Alignment explanation
Indices: 14235837--14235972 Score: 163
Period size: 43 Copynumber: 3.1 Consensus size: 44
14235827 AAAAAACACT
* *
14235837 GCTAAAGAACAAGACTTTTAGCGGCGCCCTTTCAAG-A-AAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCG-CCTTTC-AGTACAAACGCC
* *
14235881 GCTAAAGAACGTGACCTTTAGCGGCG-CTTTCTGTACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCCTTTCAGTACAAACGCC
* **
14235924 GCTAAAGAACTTGACCTTTAGCGGCG-CTTTCTCTACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCCTTTCAGTACAAACGCC
14235967 GCTAAA
1 GCTAAA
14235973 AATGTATGTT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
41 1 0.01
42 6 0.07
43 54 0.64
44 23 0.27
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
GCTAAAGAACATGACCTTTAGCGGCGCCTTTCAGTACAAACGCC
Found at i:14235939 original size:43 final size:43
Alignment explanation
Indices: 14235874--14235972 Score: 180
Period size: 43 Copynumber: 2.3 Consensus size: 43
14235864 CCTTTCAAGA
*
14235874 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTCTGTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTCTCTAC
*
14235917 AAACGCCGCTAAAGAACTTGACCTTTAGCGGCGCTTTCTCTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTCTCTAC
14235960 AAACGCCGCTAAA
1 AAACGCCGCTAAA
14235973 AATGTATGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTCTCTAC
Found at i:14236143 original size:47 final size:47
Alignment explanation
Indices: 14236066--14236206 Score: 228
Period size: 47 Copynumber: 3.0 Consensus size: 47
14236056 AATCCTTCCT
* *
14236066 GCAACATCAAATCCAACCAATGACAGCAAATCTGAATGATACTTCAA
1 GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGATACTTCAA
*
14236113 GCAACATCAAATCCAACCAATAACAACAAATCTAAATGATACTTCAA
1 GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGATACTTCAA
* * *
14236160 GAAACATCAAATCCAACCAATAATAGCAAATCTAAATGATACATCAA
1 GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGATACTTCAA
14236207 AAATTTAATG
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.50, C:0.24, G:0.07, T:0.19
Consensus pattern (47 bp):
GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGATACTTCAA
Found at i:14236435 original size:21 final size:21
Alignment explanation
Indices: 14236409--14236448 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
14236399 CTTCCCTCGC
14236409 TGCTGCCT-CATCTTTAAGTGA
1 TGCTGCCTCCA-CTTTAAGTGA
14236430 TGCTGCCTCCACTTTAAGT
1 TGCTGCCTCCACTTTAAGT
14236449 TGAGTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.38
Consensus pattern (21 bp):
TGCTGCCTCCACTTTAAGTGA
Found at i:14243707 original size:27 final size:26
Alignment explanation
Indices: 14243659--14243709 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
14243649 ACATATATAT
*
14243659 TTAAAAATATTTTCAAAAAAAAAAAC
1 TTAAAAATATTTGCAAAAAAAAAAAC
* *
14243685 TTAAAAATAATTTGGAAACAAAAAA
1 TTAAAAAT-ATTTGCAAAAAAAAAA
14243710 GGTTCTGCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.65, C:0.06, G:0.04, T:0.25
Consensus pattern (26 bp):
TTAAAAATATTTGCAAAAAAAAAAAC
Found at i:14244701 original size:543 final size:543
Alignment explanation
Indices: 14243666--14244735 Score: 1822
Period size: 543 Copynumber: 2.0 Consensus size: 543
14243656 TATTTAAAAA
14243666 TATTTTCAAAAAAAAAAACTTAAAAATAATTTGGAAACAAAAAAGGTTCTGCTCCAAACAAAACC
1 TATTTTCAAAAAAAAAAACTTAAAAATAATTTGGAAACAAAAAAGGTTCTGCTCCAAACAAAACC
* * * * *
14243731 AGCAATTAAATCTGTACAAAATCGCAGCCCCAAAATATTAATTTTTCCAAAATCATCATGATGAA
66 AACAATTAAATCTATACAAAATCGCAACCCCAAAATATTAATTTTTCAAAAATCATCATGATAAA
*
14243796 ACTATTATTGACTAGAATTTTGAACAAAAACGTACCTTAATAATTTCAACAACATGGTCTACTCC
131 ACTATTATTGACTAGAATTTTGAACAAAAACATACCTTAATAATTTCAACAACATGGTCTACTCC
* * *
14243861 ACTCTCACCAGCAAACAGAGGCTGGAGTCAAAAAAGTAGTTTTGTTAAGTAATTTAAAGTGAAAA
196 ACTCTCACCAGCAAACAGAGGCTAGAGTCAAAAAAGTAGTTTTGCTAAGTAATTTAAAGCGAAAA
* * *
14243926 TGCATAGAAATAAGTTTAGTAATTTAGCAACGAAACATGTACCTAGAACAGATGTCAATGGCTGT
261 TACATAGAAATAAGTTAAGTAATTTAACAACGAAACATGTACCTAGAACAGATGTCAATGGCTGT
14243991 GGTGTATTTAGTTGCACCAAATATTAATCCAGGTGCTCGATAGTACCTAGAACAGATGTAAGATT
326 GGTGTATTTAGTTGCACCAAATATTAATCCAGGTGCTCGATAGTACCTAGAACAGATGTAAGATT
* * *
14244056 ATAAGAGTAGCATCAAATATATTTCAGTTCAAGCAAATATAAAAACTTTATCAATGTCAGTACCA
391 ATAAGACTAGCACCAAATATATTTCAGTTCAAGCAAATATAAAAACTTTATCAATATCAGTACCA
* * *
14244121 AATATTAATTCGAAGATTAAATGGCAGTTTTAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGT
456 AATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGC
14244186 AGTAACTGAAATACAGACAACAT
521 AGTAACTGAAATACAGACAACAT
* * * *
14244209 TATTTTCAAAAGCAAAAAATTTAAAAATAATTTGGAAACAAAATA-GTTGTGCTCCAAA-AAGAA
1 TATTTTCAAAA-AAAAAAACTTAAAAATAATTTGGAAACAAAAAAGGTTCTGCTCCAAACAA-AA
*
14244272 CCAACAATTAAATCTATACAAAATTGCAACCCCAAAATATTAATTTTTCAAAAATCATCATGATA
64 CCAACAATTAAATCTATACAAAATCGCAACCCCAAAATATTAATTTTTCAAAAATCATCATGATA
* *
14244337 AAACTATTATTGATTAGAATTTTGAACTAAAACATACCTTAATAATTTCAACAAC-TGGTCTACT
129 AAACTATTATTGACTAGAATTTTGAACAAAAACATACCTTAATAATTTCAACAACATGGTCTACT
* *
14244401 CGAGTCTCACCAGCAAACAGAGGCTAGAGTCAAAAAAGTAGTATTTGCTAAGTAATTTAAAGCGA
194 CCACTCTCACCAGCAAACAGAGGCTAGAGTCAAAAAAGTAGT-TTTGCTAAGTAATTTAAAGCGA
*
14244466 AAATACATAGAAATAAGTTAAGTAATTTAACAATGAAACATGTACCTAGAACAGATGTCAATGGC
258 AAATACATAGAAATAAGTTAAGTAATTTAACAACGAAACATGTACCTAGAACAGATGTCAATGGC
**
14244531 TGTGGTGTATTTAGTTGCACCAAATATTAATTTAGGTGCTCGATAGTACCTAGAACAGATGTAAG
323 TGTGGTGTATTTAGTTGCACCAAATATTAATCCAGGTGCTCGATAGTACCTAGAACAGATGTAAG
14244596 ATTATAAGACTAGCACCAAATATATTTCAGTTCAAGCAAATATAAAAACTTTATCAATATCAGTA
388 ATTATAAGACTAGCACCAAATATATTTCAGTTCAAGCAAATATAAAAACTTTATCAATATCAGTA
14244661 CCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGA
453 CCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGA
14244726 AGCAGTAACT
518 AGCAGTAACT
14244736 ATAATAATAT
Statistics
Matches: 494, Mismatches: 30, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
542 50 0.10
543 414 0.84
544 30 0.06
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (543 bp):
TATTTTCAAAAAAAAAAACTTAAAAATAATTTGGAAACAAAAAAGGTTCTGCTCCAAACAAAACC
AACAATTAAATCTATACAAAATCGCAACCCCAAAATATTAATTTTTCAAAAATCATCATGATAAA
ACTATTATTGACTAGAATTTTGAACAAAAACATACCTTAATAATTTCAACAACATGGTCTACTCC
ACTCTCACCAGCAAACAGAGGCTAGAGTCAAAAAAGTAGTTTTGCTAAGTAATTTAAAGCGAAAA
TACATAGAAATAAGTTAAGTAATTTAACAACGAAACATGTACCTAGAACAGATGTCAATGGCTGT
GGTGTATTTAGTTGCACCAAATATTAATCCAGGTGCTCGATAGTACCTAGAACAGATGTAAGATT
ATAAGACTAGCACCAAATATATTTCAGTTCAAGCAAATATAAAAACTTTATCAATATCAGTACCA
AATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGC
AGTAACTGAAATACAGACAACAT
Found at i:14245373 original size:12 final size:12
Alignment explanation
Indices: 14245356--14245380 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14245346 CATAAGGAGT
14245356 AAACAATGATGA
1 AAACAATGATGA
14245368 AAACAATGATGA
1 AAACAATGATGA
14245380 A
1 A
14245381 CTAAAAAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.16, T:0.16
Consensus pattern (12 bp):
AAACAATGATGA
Found at i:14246808 original size:15 final size:15
Alignment explanation
Indices: 14246785--14246816 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14246775 AAATAATAAT
14246785 TTATATATATTTATC
1 TTATATATATTTATC
*
14246800 TTATTTATATTTATC
1 TTATATATATTTATC
14246815 TT
1 TT
14246817 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:14253205 original size:26 final size:26
Alignment explanation
Indices: 14253169--14253276 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14253159 TGAAATTCCG
14253169 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
14253195 ATCATGGAACAATTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
14253221 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
14253247 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14253273 ATCA
1 ATCA
14253277 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14260282 original size:26 final size:26
Alignment explanation
Indices: 14260246--14260379 Score: 250
Period size: 26 Copynumber: 5.2 Consensus size: 26
14260236 TGAAATTCCG
14260246 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14260272 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14260298 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
14260324 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
14260350 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14260376 ATCA
1 ATCA
14260380 ATTTGTACCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14265215 original size:18 final size:17
Alignment explanation
Indices: 14265155--14265253 Score: 58
Period size: 18 Copynumber: 5.6 Consensus size: 17
14265145 TAATATTCAA
* *
14265155 TTATTCAATAGAATTAG
1 TTATTCAGTAGAATCAG
* *
14265172 TTATTCAGTAACAATCAT
1 TTATTCAGT-AGAATCAG
**
14265190 TTGCTCAGTAGGAATCAG
1 TTATTCAGTA-GAATCAG
*
14265208 TTATTCAGTA-ACGATCAA
1 TTATTCAGTAGA--ATCAG
14265226 TTATTCAGTA-ACAGTCAG
1 TTATTCAGTAGA-A-TCAG
*
14265244 TCATTCAGTA
1 TTATTCAGTA
14265254 CTTTTATTTA
Statistics
Matches: 63, Mismatches: 14, Indels: 9
0.73 0.16 0.10
Matches are distributed among these distances:
16 1 0.02
17 10 0.16
18 52 0.83
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (17 bp):
TTATTCAGTAGAATCAG
Found at i:14265234 original size:36 final size:35
Alignment explanation
Indices: 14265151--14265253 Score: 109
Period size: 36 Copynumber: 2.9 Consensus size: 35
14265141 TTAGTAATAT
* *
14265151 TCAATTATTCAATAGAATTAGTTATTCAGTAACAA
1 TCAATTATTCAGTAGAATCAGTTATTCAGTAACAA
* ** *
14265186 TCATTTGCTCAGTAGGAATCAGTTATTCAGTAACGA
1 TCAATTATTCAGTA-GAATCAGTTATTCAGTAACAA
*
14265222 TCAATTATTCAGTA-ACAGTCAGTCATTCAGTA
1 TCAATTATTCAGTAGA-A-TCAGTTATTCAGTA
14265254 CTTTTATTTA
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
34 1 0.02
35 11 0.20
36 43 0.78
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (35 bp):
TCAATTATTCAGTAGAATCAGTTATTCAGTAACAA
Found at i:14270962 original size:17 final size:18
Alignment explanation
Indices: 14270930--14270973 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
14270920 AATAATAAAG
*
14270930 TAAATAAACATAAAAGAA
1 TAAAGAAACATAAAAGAA
14270948 TAAAGAAAC-TAAAAGAA
1 TAAAGAAACATAAAAGAA
14270965 TAAAAGAAA
1 T-AAAGAAA
14270974 GAAATGAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.73, C:0.05, G:0.09, T:0.14
Consensus pattern (18 bp):
TAAAGAAACATAAAAGAA
Found at i:14277972 original size:17 final size:19
Alignment explanation
Indices: 14277950--14277990 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
14277940 TATAATATAT
14277950 TATATTA-T-TATATAGAG
1 TATATTACTATATATAGAG
14277967 TATATTACTATATATAGAG
1 TATATTACTATATATAGAG
14277986 TATAT
1 TATAT
14277991 AGCATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.32
18 1 0.05
19 14 0.64
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (19 bp):
TATATTACTATATATAGAG
Found at i:14278019 original size:6 final size:7
Alignment explanation
Indices: 14278000--14278029 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
14277990 TAGCATATAA
14278000 TATTTTT
1 TATTTTT
14278007 TATTTTT
1 TATTTTT
14278014 TATTTTT
1 TATTTTT
14278021 TATTTTT
1 TATTTTT
14278028 TA
1 TA
14278030 AGGCTCGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TATTTTT
Found at i:14291932 original size:107 final size:107
Alignment explanation
Indices: 14291725--14291992 Score: 268
Period size: 107 Copynumber: 2.5 Consensus size: 107
14291715 CCTATCATCG
* * * *
14291725 CGATGGCTGAAATCCTACATATGTTGCGGATTCTTAACAACTTGTATGAGCAGCATCGTAAACTA
1 CGATGGCTGAGATCCTGCATATGTTGCGGATTCTTGACAACTTGTGTGAGCAGCATCGTAAACTA
* * ** ** * * * *
14291790 TTGAATTGAATGGCTACTATATTTTGATGACATAGACCGTTC
66 GTGAAATGAATAACTACTATATACTGACGAAATAGACCATTA
* * * *
14291832 CGATGGCTGAGATCCTGCACATGTTTCGGATTCTTGACAACTTGTGTGAGCAGCATCGTGAACTG
1 CGATGGCTGAGATCCTGCATATGTTGCGGATTCTTGACAACTTGTGTGAGCAGCATCGTAAACTA
* * **
14291897 GTGAAATGACTAACTAC-ACTGTACTGACGAAATAGATTATTA
66 GTGAAATGAATAACTACTA-TATACTGACGAAATAGACCATTA
* ** * * *
14291939 CGATGGTTGAGATCCTGCATATGTTGCAAATTCTCGTCAACATGTGTGAGCAGC
1 CGATGGCTGAGATCCTGCATATGTTGCGGATTCTTGACAACTTGTGTGAGCAGC
14291993 CTTATGAACC
Statistics
Matches: 130, Mismatches: 30, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
106 1 0.01
107 129 0.99
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (107 bp):
CGATGGCTGAGATCCTGCATATGTTGCGGATTCTTGACAACTTGTGTGAGCAGCATCGTAAACTA
GTGAAATGAATAACTACTATATACTGACGAAATAGACCATTA
Found at i:14292981 original size:21 final size:21
Alignment explanation
Indices: 14292950--14292998 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
14292940 GCATACGGTT
14292950 GAGCC-CATGGGCT-TGTGGGA
1 GAGCCACATGGG-TGTGTGGGA
14292970 TG-GCCACATGGGTGTGTGGGA
1 -GAGCCACATGGGTGTGTGGGA
14292991 GAGCCACA
1 GAGCCACA
14292999 CGGCTGAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.18, C:0.20, G:0.43, T:0.18
Consensus pattern (21 bp):
GAGCCACATGGGTGTGTGGGA
Found at i:14295731 original size:42 final size:42
Alignment explanation
Indices: 14295682--14295824 Score: 179
Period size: 41 Copynumber: 3.5 Consensus size: 42
14295672 GTAACAGTGA
14295682 TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
1 TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
*
14295724 GT-TATCAGGCTTATTGCCTAGCAGGCTTT-ATTCCGGTGTAT
1 -TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
* * * *
14295765 TAAATCAGGTTTATTACCTAGCAGGCTCTG-TGCCGGTGTAT
1 TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
*
14295806 TAT-TTAGGCTT-TATGCCTA
1 TATATCAGGCTTAT-TGCCTA
14295825 ACAAATTTTA
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
39 1 0.01
40 12 0.14
41 46 0.53
42 27 0.31
43 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (42 bp):
TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
Found at i:14296491 original size:39 final size:37
Alignment explanation
Indices: 14296391--14296483 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
14296381 ATGGCATGTA
* *
14296391 TATTTTGTCCGATCTTGGATATGTATAGGCTAATATG
1 TATTATGTCTGATCTTGGATATGTATAGGCTAATATG
*
14296428 TATTTTGTCTGATCTTGGATATGTATAGGCTAACTTATG
1 TATTATGTCTGATCTTGGATATGTATAGGCTAA--TATG
* *
14296467 T-TTATGTTTGATTTTGG
1 TATTATGTCTGATCTTGG
14296484 GTTATGTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
37 32 0.64
38 13 0.26
39 5 0.10
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.48
Consensus pattern (37 bp):
TATTATGTCTGATCTTGGATATGTATAGGCTAATATG
Found at i:14302525 original size:3 final size:3
Alignment explanation
Indices: 14302517--14302550 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
14302507 CAAGCATATT
14302517 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14302551 TTAATCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:14303763 original size:27 final size:27
Alignment explanation
Indices: 14303715--14303873 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
14303705 ACGAGGCTGC
* *
14303715 CAGATATTGT-GAAGAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
14303742 CAGATATTGTCGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
14303768 CAGATATATGTGGCAGAGCCACTAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
14303795 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
14303822 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
14303849 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
14303874 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 97 0.85
28 7 0.06
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:14303823 original size:54 final size:54
Alignment explanation
Indices: 14303733--14303873 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
14303723 GTGAAGAAGT
* * *
14303733 CACCAGATACAGAT-ATTGTCGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
14303787 CACTAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
14303841 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
14303874 GACGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:14305522 original size:26 final size:26
Alignment explanation
Indices: 14305493--14305600 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
14305483 TGAAATGCCC
* *
14305493 ATCATTGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
14305519 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* **
14305545 ATCATGGAATATTTACCTAATTCATT
1 ATCATGGAACATTTACCTAACCCATT
14305571 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14305597 ATCA
1 ATCA
14305601 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14309512 original size:17 final size:18
Alignment explanation
Indices: 14309492--14309529 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
14309482 GGATTAAATT
14309492 TAAAAAAAAATTATAA-A
1 TAAAAAAAAATTATAAGA
* *
14309509 TAAAAATATATTATAAGA
1 TAAAAAAAAATTATAAGA
14309527 TAA
1 TAA
14309530 TATTAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
TAAAAAAAAATTATAAGA
Found at i:14310666 original size:19 final size:19
Alignment explanation
Indices: 14310638--14310675 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14310628 TATCATTTTT
*
14310638 TATTTGTTTTTTGTTTTAA
1 TATTTGTTTTATGTTTTAA
*
14310657 TATTTTTTTTATGTTTTAA
1 TATTTGTTTTATGTTTTAA
14310676 ATGTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (19 bp):
TATTTGTTTTATGTTTTAA
Found at i:14310684 original size:18 final size:19
Alignment explanation
Indices: 14310644--14310686 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
14310634 TTTTTATTTG
* * *
14310644 TTTTTTGTTTTAATATTTT
1 TTTTATGTTTTAATATGTA
14310663 TTTTATGTTTTAA-ATGTA
1 TTTTATGTTTTAATATGTA
14310681 TTTTAT
1 TTTTAT
14310687 TTATTATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (19 bp):
TTTTATGTTTTAATATGTA
Found at i:14310693 original size:25 final size:24
Alignment explanation
Indices: 14310665--14310713 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
14310655 AATATTTTTT
*
14310665 TTATGTTTTAAATGTATTTTATTTA
1 TTATATTTTAAA-GTATTTTATTTA
*
14310690 TTATATTTTAAAGTTTTTTATTTA
1 TTATATTTTAAAGTATTTTATTTA
14310714 ATAAAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
TTATATTTTAAAGTATTTTATTTA
Found at i:14313275 original size:26 final size:26
Alignment explanation
Indices: 14313246--14313353 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14313236 TGGTACAAAT
14313246 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14313272 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14313298 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14313324 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14313350 TGAT
1 TGAT
14313354 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14321414 original size:26 final size:26
Alignment explanation
Indices: 14321385--14321485 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
14321375 TGGTACAAAT
14321385 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14321411 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14321437 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14321463 TGATAATGGTTTAGGTAAATGTT
1 TGATAATGGGTTAGGTAAATGTT
14321486 TGATGGGCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14323945 original size:19 final size:19
Alignment explanation
Indices: 14323899--14323946 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
14323889 GTATATATTT
14323899 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
14323917 TAAATCTTATTT-GGTTAGA
1 TAAATTTTATTTAGG-TAGA
*
14323936 TAAGTTTTATT
1 TAAATTTTATT
14323947 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:14324008 original size:43 final size:43
Alignment explanation
Indices: 14323960--14324052 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
14323950 ATTCTAGAAA
14323960 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
14324003 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
14324046 TATTTTC
1 TATTTTC
14324053 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:14327763 original size:19 final size:19
Alignment explanation
Indices: 14327717--14327764 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
14327707 GTATATATTT
14327717 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
14327735 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
14327754 TAAGTTTTATT
1 TAAATTTTATT
14327765 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:14327826 original size:43 final size:43
Alignment explanation
Indices: 14327778--14327870 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
14327768 ATTCTAGAAA
*
14327778 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAATGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
14327821 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
14327864 TATTTTC
1 TATTTTC
14327871 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:14328489 original size:27 final size:27
Alignment explanation
Indices: 14328434--14328507 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 27
14328424 TAAAAGAATT
* *
14328434 TATATTTATAATGAAATAATTATATAA
1 TATATATATAATGAAATAATTATAGAA
14328461 TATATATAT-ATGAATATAAGTT-TAGAA
1 TATATATATAATGAA-ATAA-TTATAGAA
* *
14328488 TA-ATATAAAAT-AAGTAATTA
1 TATATATATAATGAAATAATTA
14328508 ATGATGAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
24 2 0.05
25 3 0.08
26 12 0.31
27 20 0.51
28 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.41
Consensus pattern (27 bp):
TATATATATAATGAAATAATTATAGAA
Found at i:14328694 original size:3 final size:3
Alignment explanation
Indices: 14328688--14328742 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
14328678 ACTTGTGAAA
14328688 AAT AAT ATAT AAT AAAT AAT AAT AAT AAT -AT AAAT AAT ATAT AAT -AT
1 AAT AAT A-AT AAT -AAT AAT AAT AAT AAT AAT -AAT AAT A-AT AAT AAT
*
14328735 AAA AAT AA
1 AAT AAT AA
14328743 GGTTAAAGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
2 4 0.09
3 29 0.66
4 11 0.25
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14328701 original size:7 final size:7
Alignment explanation
Indices: 14328689--14328735 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 7
14328679 CTTGTGAAAA
14328689 ATAATAT
1 ATAATAT
*
14328696 ATAATAA
1 ATAATAT
14328703 ATAATA-
1 ATAATAT
14328709 ATAATA-
1 ATAATAT
*
14328715 AT-ATAA
1 ATAATAT
14328721 ATAATAT
1 ATAATAT
14328728 ATAATAT
1 ATAATAT
14328735 A
1 A
14328736 AAAATAAGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
5 3 0.08
6 10 0.28
7 23 0.64
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
ATAATAT
Done.