Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 51 of 349
Found at i:14656560 original size:15 final size:15
Alignment explanation
Indices: 14656542--14656598 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
14656532 ATTCAATATT
14656542 AATATTTTAATAATA
1 AATATTTTAATAATA
*
14656557 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
14656576 AATATATTAATAATA
1 AATATTTTAATAATA
*
14656591 AATGTTTT
1 AATATTTT
14656599 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:14657076 original size:14 final size:14
Alignment explanation
Indices: 14657057--14657094 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
14657047 CCAGAAAAGT
14657057 AATCATTTTCC-ATA
1 AATCATTTTCCGA-A
14657071 AATCATTTTCCGAA
1 AATCATTTTCCGAA
*
14657085 AGTCATTTTC
1 AATCATTTTC
14657095 AGTGAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (14 bp):
AATCATTTTCCGAA
Found at i:14659321 original size:15 final size:14
Alignment explanation
Indices: 14659297--14659326 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
14659287 TGTCTACCCT
14659297 CATCAAGTAATTAC
1 CATCAAGTAATTAC
14659311 CATCTAAGTAATTAC
1 CATC-AAGTAATTAC
14659326 C
1 C
14659327 TTTGATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (14 bp):
CATCAAGTAATTAC
Found at i:14677180 original size:34 final size:34
Alignment explanation
Indices: 14677134--14677198 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
14677124 CACATCTGGC
14677134 ACTGAAACTGAAATGGACTAAGGCCCAAACTACT
1 ACTGAAACTGAAATGGACTAAGGCCCAAACTACT
* * *
14677168 ACTGAAATTGAAATGGGCTTAGGCCCAAACT
1 ACTGAAACTGAAATGGACTAAGGCCCAAACT
14677199 GCATTTGACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (34 bp):
ACTGAAACTGAAATGGACTAAGGCCCAAACTACT
Found at i:14687029 original size:13 final size:13
Alignment explanation
Indices: 14687011--14687049 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
14687001 AAGTAATCGA
*
14687011 ACACGAGCATGTC
1 ACACGAGCGTGTC
*
14687024 ACACGAGCGTATC
1 ACACGAGCGTGTC
14687037 ACACGAGCGTGTC
1 ACACGAGCGTGTC
14687050 CCTACCGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.15
Consensus pattern (13 bp):
ACACGAGCGTGTC
Found at i:14696309 original size:26 final size:25
Alignment explanation
Indices: 14696273--14696323 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
14696263 TGTCGAACCA
14696273 AAGGAACTAAAAGTACTAGTAATGAC
1 AAGGAACTAAAAGTACTAG-AATGAC
*
14696299 AAGGAACTAAAAGTATTAGAATGAC
1 AAGGAACTAAAAGTACTAGAATGAC
14696324 TGTCCTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.51, C:0.10, G:0.20, T:0.20
Consensus pattern (25 bp):
AAGGAACTAAAAGTACTAGAATGAC
Found at i:14699004 original size:17 final size:17
Alignment explanation
Indices: 14698982--14699020 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
14698972 TTTTAAAAGG
*
14698982 AAAACAAATGAATCTTC
1 AAAACAAATGAATCTTA
14698999 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
14699016 AAAAC
1 AAAAC
14699021 TTAATCACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:14700591 original size:89 final size:89
Alignment explanation
Indices: 14700440--14700618 Score: 331
Period size: 89 Copynumber: 2.0 Consensus size: 89
14700430 TAAATCTAAT
*
14700440 TCCATGTTAACTAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
1 TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
*
14700505 TCCCTAGAATTTATACCTTTACAA
66 TCCCTAAAATTTATACCTTTACAA
14700529 TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
1 TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
*
14700594 TCCGTAAAATTTATACCTTTACAA
66 TCCCTAAAATTTATACCTTTACAA
14700618 T
1 T
14700619 TTAGTCCCTA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.32
Consensus pattern (89 bp):
TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
TCCCTAAAATTTATACCTTTACAA
Found at i:14704703 original size:21 final size:20
Alignment explanation
Indices: 14704679--14704719 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14704669 AGAGTTGGGA
* *
14704679 GTTCTATTGATATAACTCTGG
1 GTTCTATGGATACAAC-CTGG
14704700 GTTCTATGGATACAACCTGG
1 GTTCTATGGATACAACCTGG
14704720 TCTTCTATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (20 bp):
GTTCTATGGATACAACCTGG
Found at i:14709175 original size:78 final size:78
Alignment explanation
Indices: 14709046--14709201 Score: 267
Period size: 78 Copynumber: 2.0 Consensus size: 78
14709036 TAATGACTAT
* *
14709046 GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAATGAAATTTAGTTGATAGGCTTAGTAACCA
1 GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAACGAAATTTAGTTGATAGGCCTAGTAACCA
14709111 TCCAACTATAGGA
66 TCCAACTATAGGA
* * *
14709124 GCAAGAGGATTAAATCAATTTGAAAGAAATCAAGTACGAAATTTAGTTGATAGGCCTAGTGACCA
1 GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAACGAAATTTAGTTGATAGGCCTAGTAACCA
14709189 TCCAACTATAGGA
66 TCCAACTATAGGA
14709202 ACTAAATGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (78 bp):
GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAACGAAATTTAGTTGATAGGCCTAGTAACCA
TCCAACTATAGGA
Found at i:14710485 original size:20 final size:21
Alignment explanation
Indices: 14710462--14710502 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14710452 ATCACTTTAA
*
14710462 TATTAA-ATTAATATAATATT
1 TATTAAGATAAATATAATATT
*
14710482 TATTAAGATAAATATATTATT
1 TATTAAGATAAATATAATATT
14710503 AAAATTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTAAGATAAATATAATATT
Found at i:14711299 original size:16 final size:16
Alignment explanation
Indices: 14711280--14711327 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
14711270 TTAATTTTTT
14711280 AAAAATTATAAAAAT-
1 AAAAATTATAAAAATA
* *
14711295 AAAAACTATTAAAATA
1 AAAAATTATAAAAATA
*
14711311 ATAAACTTATAAAAATA
1 A-AAAATTATAAAAATA
14711328 TAAATTTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 13 0.50
16 1 0.04
17 12 0.46
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATTATAAAAATA
Found at i:14711330 original size:16 final size:16
Alignment explanation
Indices: 14711285--14711331 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
14711275 TTTTTAAAAA
*
14711285 TTATAAAAATAAAAAC
1 TTATAAAAATATAAAC
*
14711301 -TATTAAAATAATAAAC
1 TTATAAAAAT-ATAAAC
14711317 TTATAAAAATATAAA
1 TTATAAAAATATAAA
14711332 TTTAATTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 8 0.31
16 10 0.38
17 8 0.31
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (16 bp):
TTATAAAAATATAAAC
Found at i:14715087 original size:40 final size:40
Alignment explanation
Indices: 14714905--14715125 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
14714895 TTGAATGATG
* * * *
14714905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
14714945 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC--AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
14714983 T-TGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14715021 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14715060 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14715101 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14715126 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
36 23 0.14
37 7 0.04
38 4 0.03
39 44 0.28
40 71 0.45
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14715147 original size:79 final size:79
Alignment explanation
Indices: 14714905--14715158 Score: 213
Period size: 79 Copynumber: 3.3 Consensus size: 79
14714895 TTGAATGATG
* * * * *
14714905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
14714967 TTTGTGCGAGATAC--AA
62 TTTGAACGAGTTACTAAA
* * *
14714983 T-TGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
**
14715046 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* *
14715060 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
14715124 TGAACGAG-TAGCTATA
64 TGAACGAGTTA-CTAAA
* *
14715140 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
14715159 TACGTGATTT
Statistics
Matches: 149, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
75 22 0.15
76 20 0.13
77 22 0.15
78 11 0.07
79 49 0.33
80 25 0.17
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTTACTAAA
Found at i:14723124 original size:39 final size:39
Alignment explanation
Indices: 14722895--14723117 Score: 252
Period size: 39 Copynumber: 5.6 Consensus size: 39
14722885 TTGAATGATG
* * * *
14722895 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
14722935 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
14722975 TCCGGGCTAAGCCCGATGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
14723014 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
14723053 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
14723094 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
14723118 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 84 0.52
40 67 0.42
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14723124 original size:79 final size:78
Alignment explanation
Indices: 14722895--14723136 Score: 274
Period size: 79 Copynumber: 3.1 Consensus size: 78
14722885 TTGAATGATG
* * * *
14722895 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATT
* *
14722959 TGTGTGAGATACTAAT
64 TGTGCGAG-TACTAAA
* * *
14722975 TCCGGGCTAAG-CCCGATGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAGCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTT
14723038 GTGCGAGTTACTAAA
65 GTGCGAG-TACTAAA
* * *
14723053 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTG
** *
14723118 AACGAGTAGCTATA
66 TGCGAGTA-CTAAA
14723132 TCCGG
1 TCCGG
14723137 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
78 37 0.27
79 82 0.59
80 19 0.14
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGTACTAAA
Found at i:14723136 original size:118 final size:119
Alignment explanation
Indices: 14722895--14723123 Score: 277
Period size: 118 Copynumber: 1.9 Consensus size: 119
14722885 TTGAATGATG
*
14722895 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * * **
14722960 GTGTGAGATACTAATTCCGGGCTAAGCCCGATGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAAT
* * * **
14723014 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
14723076 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAG
64 TTGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAG
14723124 TAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
117 3 0.03
118 72 0.77
119 18 0.19
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAAT
Found at i:14723147 original size:39 final size:40
Alignment explanation
Indices: 14722908--14723150 Score: 164
Period size: 39 Copynumber: 6.2 Consensus size: 40
14722898 GGGCTAAGTC
* * * **
14722908 CCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGA-T
1 CCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAA-ATT
* * * **
14722948 CCGAAGGCATTTGTGTGAGATACTA-ATTCCGGGCT-AAGC
1 CCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGTTAAATT
* * * **
14722987 CCGATGGCATTTGTGCGAGATACTA-ATTCCGGGCT-AAGC
1 CCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGTTAAATT
* * *
14723026 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAATT
* *
14723066 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT--ATGT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAAT-T
**
14723105 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAATT
14723144 CCGAAGG
1 CCGAAGG
14723151 TACGTGATTT
Statistics
Matches: 171, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
38 7 0.04
39 101 0.59
40 57 0.33
41 6 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAATT
Found at i:14733698 original size:19 final size:20
Alignment explanation
Indices: 14733662--14733699 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14733652 GTAATTACTC
*
14733662 ATAAAGAAAAACTGAAATTG
1 ATAAAGAAAAACTAAAATTG
*
14733682 ATAATGAAAAA-TAAAATT
1 ATAAAGAAAAACTAAAATT
14733700 CTAAAATCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.24
Consensus pattern (20 bp):
ATAAAGAAAAACTAAAATTG
Found at i:14738156 original size:37 final size:36
Alignment explanation
Indices: 14738083--14738153 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
14738073 AAGATGTTTA
*
14738083 AAAACATTTATTTATTTTATGCTTTTAATTTTTATT
1 AAAACATTTATTTATTTTATGCTTTTAATTATTATT
*
14738119 AAAACTATTT-TTTATTTTAT--TTTTATTTATTATT
1 AAAAC-ATTTATTTATTTTATGCTTTTAATTATTATT
14738153 A
1 A
14738154 TTATTATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 13 0.41
36 15 0.47
37 4 0.12
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (36 bp):
AAAACATTTATTTATTTTATGCTTTTAATTATTATT
Found at i:14741193 original size:10 final size:10
Alignment explanation
Indices: 14741178--14741207 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
14741168 TCTCTTTCAT
14741178 TGCTCTCCTA
1 TGCTCTCCTA
14741188 TGCTCTCCTA
1 TGCTCTCCTA
*
14741198 TACTCTCCTA
1 TGCTCTCCTA
14741208 ACTATAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.40, G:0.07, T:0.40
Consensus pattern (10 bp):
TGCTCTCCTA
Found at i:14757869 original size:40 final size:38
Alignment explanation
Indices: 14757772--14757856 Score: 170
Period size: 38 Copynumber: 2.2 Consensus size: 38
14757762 TGGCTGATTA
14757772 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
1 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
14757810 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
1 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
14757848 AATGGCACT
1 AATGGCACT
14757857 AAGTATGCGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (38 bp):
AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
Found at i:14768828 original size:6 final size:6
Alignment explanation
Indices: 14768819--14768858 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
14768809 ATTTTAATTG
*
14768819 ATTTTT ATTTTT ATTTTT ATTTTT TTATTTT ATTTTT ATT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT ATTTTT ATT
14768859 AAGTTCACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
ATTTTT
Found at i:14768849 original size:19 final size:20
Alignment explanation
Indices: 14768820--14768858 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
14768810 TTTTAATTGA
14768820 TTTTTATTTTTATTTTTATT
1 TTTTTATTTTTATTTTTATT
14768840 TTTTTA-TTTTATTTTTATT
1 TTTTTATTTTTATTTTTATT
14768859 AAGTTCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTATTTTTATTTTTATT
Found at i:14777318 original size:13 final size:13
Alignment explanation
Indices: 14777297--14777328 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14777287 CAATTAGTGC
*
14777297 TAATAATAATAAT
1 TAATGATAATAAT
14777310 TAATGATAATAAT
1 TAATGATAATAAT
14777323 TAATGA
1 TAATGA
14777329 CCAAATAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (13 bp):
TAATGATAATAAT
Found at i:14778538 original size:4 final size:4
Alignment explanation
Indices: 14778529--14778553 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14778519 GAAAAATTTG
14778529 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
14778554 TTCGGCTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:14779451 original size:13 final size:13
Alignment explanation
Indices: 14779433--14779457 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14779423 TTATACATTT
14779433 TAAATTACTTTGA
1 TAAATTACTTTGA
14779446 TAAATTACTTTG
1 TAAATTACTTTG
14779458 TTTTTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (13 bp):
TAAATTACTTTGA
Found at i:14783568 original size:2 final size:2
Alignment explanation
Indices: 14783561--14783606 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
14783551 GCCTCAGAAA
14783561 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14783603 CT CT
1 CT CT
14783607 GTATGATCCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14788647 original size:20 final size:20
Alignment explanation
Indices: 14788624--14788685 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
14788614 TAATCAAAGA
14788624 AACATATTAGAACAAAATAT
1 AACATATTAGAACAAAATAT
* **
14788644 AACAAATT--TCCAAACATA-
1 AACATATTAGAACAAA-ATAT
*
14788662 GACATATTAGAACAAAATAT
1 AACATATTAGAACAAAATAT
14788682 AACA
1 AACA
14788686 AATTTCCAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
18 10 0.33
19 6 0.20
20 14 0.47
ACGTcount: A:0.58, C:0.15, G:0.05, T:0.23
Consensus pattern (20 bp):
AACATATTAGAACAAAATAT
Found at i:14788676 original size:38 final size:38
Alignment explanation
Indices: 14788625--14788701 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
14788615 AATCAAAGAA
14788625 ACATATTAGAACAAAATATAACAAATTTCCAAACATAG
1 ACATATTAGAACAAAATATAACAAATTTCCAAACATAG
14788663 ACATATTAGAACAAAATATAACAAATTTCCAAACATAG
1 ACATATTAGAACAAAATATAACAAATTTCCAAACATAG
14788701 A
1 A
14788702 TAAATAACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.56, C:0.16, G:0.05, T:0.23
Consensus pattern (38 bp):
ACATATTAGAACAAAATATAACAAATTTCCAAACATAG
Found at i:14789347 original size:3 final size:3
Alignment explanation
Indices: 14789339--14789490 Score: 51
Period size: 3 Copynumber: 49.7 Consensus size: 3
14789329 GAATTAAAAT
* * * * **
14789339 TAA TAA TAA CAA AAA TAA TAA TAA TAA TAG TAA TAA -AA AAA TGC TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * * *
14789386 TAG TGA TAT TAG TGA TAG TAA TAA TAGA AAA TAA TAA T-A TACA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA
* * *
14789432 TAA TAA CAA CAA TAA T-A TGA TAAA TAGGA -AA TAA TAA TACA CTAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TA--A TAA TAA TAA TA-A -TAA
*
14789477 TAA GAA TAA TAA TA
1 TAA TAA TAA TAA TA
14789491 GATTACTAAT
Statistics
Matches: 108, Mismatches: 30, Indels: 22
0.68 0.19 0.14
Matches are distributed among these distances:
2 7 0.06
3 88 0.81
4 10 0.09
5 3 0.03
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:14790838 original size:2 final size:2
Alignment explanation
Indices: 14790831--14790865 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
14790821 ACTTAATACT
14790831 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14790866 TACTATTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14791017 original size:18 final size:18
Alignment explanation
Indices: 14790980--14791062 Score: 66
Period size: 18 Copynumber: 4.6 Consensus size: 18
14790970 TATTTGTTCC
*
14790980 TTTTAAGTATTATATATATA
1 TTTTATGTA-TAT-TATATA
14791000 TTTTATGTATATTATATA
1 TTTTATGTATATTATATA
* *
14791018 TTATATGTATACT-T-TA
1 TTTTATGTATATTATATA
14791034 TTTTA--TATATTACGTATA
1 TTTTATGTATATTA--TATA
*
14791052 TATTATGTATA
1 TTTTATGTATA
14791063 CGCTTTTAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
14 5 0.10
16 6 0.12
17 2 0.04
18 23 0.45
19 3 0.06
20 12 0.24
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTTATGTATATTATATA
Found at i:14791052 original size:34 final size:33
Alignment explanation
Indices: 14790998--14791063 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 33
14790988 ATTATATATA
14790998 TATTTTATGTATATTATATAT-TATATGTATACTT
1 TATTTTA-GTATATTATATATAT-TATGTATACTT
14791032 TATTTTA-TATATTACGTATATATTATGTATAC
1 TATTTTAGTATATTA--TATATATTATGTATAC
14791064 GCTTTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
32 7 0.24
34 21 0.72
35 1 0.03
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (33 bp):
TATTTTAGTATATTATATATATTATGTATACTT
Found at i:14792290 original size:3 final size:3
Alignment explanation
Indices: 14792282--14792330 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
14792272 TGGTTACGAC
14792282 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14792330 A
1 A
14792331 GAAAATACTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14792483 original size:3 final size:3
Alignment explanation
Indices: 14792475--14792523 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
14792465 AATATAATGG
*
14792475 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14792523 T
1 T
14792524 TTGGGTAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14793534 original size:18 final size:17
Alignment explanation
Indices: 14793511--14793544 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
14793501 GCTAGGGTTT
14793511 TTTTTCTTTTTTCTTTTC
1 TTTTTCTTTTTT-TTTTC
14793529 TTTTTCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
14793545 GATTATTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTCTTTTTTTTTTC
Found at i:14795934 original size:15 final size:15
Alignment explanation
Indices: 14795914--14795946 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14795904 TTCAAATGTA
14795914 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
*
14795929 AAAAAAGAAAAAAAG
1 AAAAAAAAAAAAAAG
14795944 AAA
1 AAA
14795947 GAAAGAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:14795943 original size:8 final size:8
Alignment explanation
Indices: 14795913--14795953 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
14795903 ATTCAAATGT
*
14795913 AAAAAAAA
1 AAAAAAAG
14795921 AAAAAAAG
1 AAAAAAAG
14795929 -AAAAAAG
1 AAAAAAAG
14795936 AAAAAAAG
1 AAAAAAAG
*
14795944 AAAGAAAG
1 AAAAAAAG
14795952 AA
1 AA
14795954 TCAAAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 7 0.23
8 23 0.77
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:14795959 original size:19 final size:19
Alignment explanation
Indices: 14795913--14795950 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
14795903 ATTCAAATGT
14795913 AAAA-AAAAAAAAAAAGAA
1 AAAAGAAAAAAAAAAAGAA
*
14795931 AAAAGAAAAAAAGAAAGAA
1 AAAAGAAAAAAAAAAAGAA
14795950 A
1 A
14795951 GAATCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAAAAAAAGAA
Found at i:14796696 original size:59 final size:59
Alignment explanation
Indices: 14796624--14796735 Score: 215
Period size: 59 Copynumber: 1.9 Consensus size: 59
14796614 TGTAAGTATC
14796624 CTTGCTAACTTGTACCAAACCTTGTTTTCTTGAGGAAATAAAATATTCACTTAATTAAA
1 CTTGCTAACTTGTACCAAACCTTGTTTTCTTGAGGAAATAAAATATTCACTTAATTAAA
*
14796683 CTTGCTAACTTGTACCAAACTTTGTTTTCTTGAGGAAATAAAATATTCACTTA
1 CTTGCTAACTTGTACCAAACCTTGTTTTCTTGAGGAAATAAAATATTCACTTA
14796736 CTCAAATATA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (59 bp):
CTTGCTAACTTGTACCAAACCTTGTTTTCTTGAGGAAATAAAATATTCACTTAATTAAA
Found at i:14799108 original size:21 final size:21
Alignment explanation
Indices: 14799084--14799132 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
14799074 ATTTTTCGAG
14799084 TTTTAGGTTTCAAGTTTTGGA
1 TTTTAGGTTTCAAGTTTTGGA
* * *
14799105 TTTTCA-ATTTGAAGTTTTGGT
1 TTTT-AGGTTTCAAGTTTTGGA
14799126 TTTTAGG
1 TTTTAGG
14799133 GTTTTGGATT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
20 1 0.05
21 20 0.91
22 1 0.05
ACGTcount: A:0.18, C:0.04, G:0.22, T:0.55
Consensus pattern (21 bp):
TTTTAGGTTTCAAGTTTTGGA
Found at i:14801938 original size:20 final size:19
Alignment explanation
Indices: 14801909--14801966 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 19
14801899 TATTAAAAAG
*
14801909 TTTTTTATAATTTATATAC
1 TTTTTAATAATTTATATAC
*
14801928 TTTTTAAATAATTTAAATA-
1 TTTTT-AATAATTTATATAC
*
14801947 ATTTTAA-AATTT-TATAC
1 TTTTTAATAATTTATATAC
14801964 TTT
1 TTT
14801967 AAAAAATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 3 0.09
17 7 0.22
18 2 0.06
19 9 0.28
20 11 0.34
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTTAATAATTTATATAC
Found at i:14804109 original size:3 final size:3
Alignment explanation
Indices: 14804103--14804132 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
14804093 TTCACATTTC
14804103 TAA TAA TAAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TA
14804133 GAATTTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14805027 original size:24 final size:25
Alignment explanation
Indices: 14804991--14805042 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
14804981 TTTAATTCTT
14804991 TTTAATTATATAA-AAATAAAATTAA
1 TTTAATTATATAATAAA-AAAATTAA
* *
14805016 TTTATTTA-ATAATAAAAAGATTAA
1 TTTAATTATATAATAAAAAAATTAA
14805040 TTT
1 TTT
14805043 CTTCCAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATTATATAATAAAAAAATTAA
Found at i:14805029 original size:21 final size:20
Alignment explanation
Indices: 14804992--14805032 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14804982 TTAATTCTTT
14804992 TTAATTATATAAAAATAAAA
1 TTAATTATATAAAAATAAAA
* *
14805012 TTAATTTATTTAATAATAAAA
1 TTAA-TTATATAAAAATAAAA
14805033 AGATTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAATTATATAAAAATAAAA
Found at i:14812180 original size:31 final size:31
Alignment explanation
Indices: 14812142--14812205 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
14812132 AAGTGATATA
14812142 TGAGAAAGATTTATATTTGAATGCTTATTAT
1 TGAGAAAGATTTATATTTGAATGCTTATTAT
14812173 TGAGAAAGATTTATATTTGAATGCTTATTAT
1 TGAGAAAGATTTATATTTGAATGCTTATTAT
14812204 TG
1 TG
14812206 TAGTTGGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.45
Consensus pattern (31 bp):
TGAGAAAGATTTATATTTGAATGCTTATTAT
Found at i:14814710 original size:27 final size:27
Alignment explanation
Indices: 14814673--14814877 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
14814663 TAAATTGTAC
14814673 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
14814700 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14814727 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14814753 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14814781 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14814809 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14814836 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14814863 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14814878 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14814812 original size:109 final size:108
Alignment explanation
Indices: 14814674--14814877 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
14814664 AAATTGTACA
* *
14814674 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
14814739 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
14814782 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
14814847 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
14814878 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:14817446 original size:36 final size:36
Alignment explanation
Indices: 14817395--14817469 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
14817385 TGTTGGGGCA
14817395 AAGTCTACTAACAGGGCCTGTTACGGATGCGGTTCG
1 AAGTCTACTAACAGGGCCTGTTACGGATGCGGTTCG
*
14817431 AAGTCTACTAGCAGGGCCTGTTACGGATGCGGTTCG
1 AAGTCTACTAACAGGGCCTGTTACGGATGCGGTTCG
14817467 AAG
1 AAG
14817470 GACCACTTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (36 bp):
AAGTCTACTAACAGGGCCTGTTACGGATGCGGTTCG
Found at i:14822886 original size:27 final size:27
Alignment explanation
Indices: 14822849--14823053 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
14822839 TAAATTGTAC
14822849 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
14822876 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14822903 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14822929 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14822957 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14822985 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14823012 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14823039 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14823054 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14822988 original size:109 final size:108
Alignment explanation
Indices: 14822850--14823053 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
14822840 AAATTGTACA
* *
14822850 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
14822915 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
14822958 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
14823023 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
14823054 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:14832896 original size:23 final size:22
Alignment explanation
Indices: 14832870--14832923 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
14832860 GGCATCGAAG
14832870 AATTCCCAGTTCACGCAAAAATC
1 AATT-CCAGTTCACGCAAAAATC
*
14832893 AATTGCAGTTCACGCAAAAATC
1 AATTCCAGTTCACGCAAAAATC
*
14832915 AATTGCAGT
1 AATTCCAGT
14832924 AAGGAGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.24
Consensus pattern (22 bp):
AATTCCAGTTCACGCAAAAATC
Found at i:14832901 original size:22 final size:22
Alignment explanation
Indices: 14832876--14832923 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
14832866 GAAGAATTCC
14832876 CAGTTCACGCAAAAATCAATTG
1 CAGTTCACGCAAAAATCAATTG
14832898 CAGTTCACGCAAAAATCAATTG
1 CAGTTCACGCAAAAATCAATTG
14832920 CAGT
1 CAGT
14832924 AAGGAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.23
Consensus pattern (22 bp):
CAGTTCACGCAAAAATCAATTG
Found at i:14833625 original size:33 final size:33
Alignment explanation
Indices: 14833583--14833651 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
14833573 GATGAAAAAC
*
14833583 AATGATATTTTAAATATTTTACATATTTGAAAT
1 AATGATATTTGAAATATTTTACATATTTGAAAT
* *
14833616 AATGGTATTTGAAATATTTTACATATTTTAAAT
1 AATGATATTTGAAATATTTTACATATTTGAAAT
14833649 AAT
1 AAT
14833652 AATAATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (33 bp):
AATGATATTTGAAATATTTTACATATTTGAAAT
Found at i:14835292 original size:24 final size:24
Alignment explanation
Indices: 14835263--14835313 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
14835253 TGATATATAT
*
14835263 ATTATTTT-TATTTATATATTATCC
1 ATTATTTTATATCTAT-TATTATCC
*
14835287 ATTATTTTATATCTATTATTATTC
1 ATTATTTTATATCTATTATTATCC
14835311 ATT
1 ATT
14835314 TTTAAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTATTTTATATCTATTATTATCC
Found at i:14835307 original size:17 final size:17
Alignment explanation
Indices: 14835258--14835460 Score: 68
Period size: 17 Copynumber: 11.6 Consensus size: 17
14835248 TAAAATGATA
*
14835258 TATATATTATTTTTATT
1 TATATATTATTATTATT
*
14835275 TATATATTATCCATTATTT
1 TATATATTAT-TATTA-TT
14835294 TATATCTATTATTATTCATT
1 TATA--TATTATTATT-ATT
* * *
14835314 TTTAAATTA-TATGTAAT
1 TATATATTATTAT-TATT
* *
14835331 TAAATTTTATTA-TATT
1 TATATATTATTATTATT
*
14835347 ATATCGTATTA-TATTATT
1 -TAT-ATATTATTATTATT
14835365 CTATATAGTATATATATTA-T
1 -TATATA-T-TAT-TATTATT
*
14835385 TA-ATATT-TTATTAAT
1 TATATATTATTATTATT
* *
14835400 TA-ACTATTTTCTAATGTATG
1 TATA-TATTAT-T-AT-TATT
14835420 TAT-TATTATTATTATT
1 TATATATTATTATTATT
*
14835436 T-T-TATTAATATTA-T
1 TATATATTATTATTATT
14835450 TATATTATTAT
1 TATA-TATTAT
14835461 ATGCTTCCTA
Statistics
Matches: 140, Mismatches: 22, Indels: 48
0.67 0.10 0.23
Matches are distributed among these distances:
14 7 0.05
15 17 0.12
16 12 0.09
17 35 0.25
18 27 0.19
19 17 0.12
20 13 0.09
21 12 0.09
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.59
Consensus pattern (17 bp):
TATATATTATTATTATT
Found at i:14835361 original size:20 final size:21
Alignment explanation
Indices: 14835338--14835385 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
14835328 AATTAAATTT
*
14835338 TATTATAT-TATATCGTAT-TA
1 TATTAT-TCTATATAGTATATA
14835358 TATTATTCTATATAGTATATA
1 TATTATTCTATATAGTATATA
14835379 TATTATT
1 TATTATT
14835386 AATATTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 15 0.60
21 9 0.36
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.56
Consensus pattern (21 bp):
TATTATTCTATATAGTATATA
Found at i:14835428 original size:3 final size:3
Alignment explanation
Indices: 14835420--14835460 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
14835410 CTAATGTATG
* *
14835420 TAT TAT TAT TAT TAT TTT TAT TAA TAT TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14835461 ATGCTTCCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14836726 original size:13 final size:13
Alignment explanation
Indices: 14836710--14836734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14836700 CAATATATTT
14836710 ATTAATTATAAAC
1 ATTAATTATAAAC
14836723 ATTAATTATAAA
1 ATTAATTATAAA
14836735 TAAAAAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTAATTATAAAC
Found at i:14836748 original size:21 final size:24
Alignment explanation
Indices: 14836719--14836766 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
14836709 TATTAATTAT
14836719 AAACATT-AAT-TAT-AAATAAAA
1 AAACATTAAATATATGAAATAAAA
*
14836740 AAACTTTAAATAATATGAAATAAAA
1 AAACATTAAAT-ATATGAAATAAAA
14836765 AA
1 AA
14836767 TATATATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 6 0.27
22 3 0.14
24 3 0.14
25 10 0.45
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (24 bp):
AAACATTAAATATATGAAATAAAA
Found at i:14837846 original size:18 final size:19
Alignment explanation
Indices: 14837823--14837861 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
14837813 AATATGTTAT
*
14837823 ATTATGTTATTTATAA-AC
1 ATTATGTAATTTATAATAC
14837841 ATTATGTAATTTATAATAC
1 ATTATGTAATTTATAATAC
14837860 AT
1 AT
14837862 AAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTATGTAATTTATAATAC
Found at i:14840441 original size:37 final size:37
Alignment explanation
Indices: 14840382--14840527 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
14840372 AGCTCAGACG
* *
14840382 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14840419 AAATCTCCACACTTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14840456 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14840493 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
14840528 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:14840786 original size:47 final size:47
Alignment explanation
Indices: 14840734--14840927 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
14840724 CATACATATT
* * * *
14840734 TCACATTAGCCATTCGGCTTTACCACATATATACATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* * *
14840781 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* *
14840828 TCGCATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* **
14840875 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
14840922 TCACAT
1 TCACAT
14840928 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
Found at i:14845424 original size:30 final size:30
Alignment explanation
Indices: 14845390--14845470 Score: 74
Period size: 30 Copynumber: 2.6 Consensus size: 30
14845380 TTTTCCTCAA
* *
14845390 ATTATAATTATTTTACATCAAATTTTTTAT
1 ATTATAATTATTTTACATCAAATATTATAT
* * *
14845420 ATTATTATTATATTTTCA-CATATATTATAT
1 ATTATAATTAT-TTTACATCAAATATTATAT
14845450 ATTTACTAATTATTTATACAT
1 A-TTA-TAATTATTT-TACAT
14845471 GCCATTTTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
30 20 0.51
31 10 0.26
32 9 0.23
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (30 bp):
ATTATAATTATTTTACATCAAATATTATAT
Found at i:14846596 original size:26 final size:26
Alignment explanation
Indices: 14846567--14846674 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14846557 TGATACAAAT
*
14846567 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
*
14846593 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGAGTTAGGTAAATGTTCCA
* *
14846619 TGATAATGGGTTAGGTAATTGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
14846645 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
14846671 TGAT
1 TGAT
14846675 TGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTCCA
Found at i:14848185 original size:26 final size:26
Alignment explanation
Indices: 14848156--14848208 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14848146 TTTACAGTTT
14848156 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
14848182 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
14848208 T
1 T
14848209 GCATATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:14853600 original size:26 final size:26
Alignment explanation
Indices: 14853571--14853626 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14853561 TGATACAAAT
14853571 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14853597 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14853623 TGAT
1 TGAT
14853627 TGTAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14862033 original size:38 final size:38
Alignment explanation
Indices: 14861982--14862330 Score: 464
Period size: 38 Copynumber: 9.1 Consensus size: 38
14861972 ATATTCGATG
*
14861982 TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
14862020 TATATCCGAGTTAAATCCCGTAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
14862058 TATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
14862096 TATATCCGGGTTAAATTCCACAGGCTTCGGGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
14862134 TATATCCTGGTTAAATCCCGCAGGCTTCGTGCTGGTGT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
14862172 TATATCCGGGTTAAATCCAGTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
14862210 TATATCGGGGCTTAAAGACCCGCTGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* * *
14862250 AATATCTGGGTTAAATCTCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
14862288 TATATCTGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
14862326 TATAT
1 TATAT
14862331 TCAGGCCTTC
Statistics
Matches: 271, Mismatches: 38, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
38 235 0.87
39 10 0.04
40 26 0.10
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:14862397 original size:43 final size:43
Alignment explanation
Indices: 14862328--14862439 Score: 179
Period size: 43 Copynumber: 2.6 Consensus size: 43
14862318 GCTGGTATTA
* * *
14862328 TATTCAGGCCTTCATGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
14862371 TATTCGGGCCTTCGTGTCTAGCAGGCTTGGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
14862414 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
14862440 GTAATGCTGG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:14862452 original size:43 final size:43
Alignment explanation
Indices: 14862307--14862439 Score: 171
Period size: 43 Copynumber: 3.1 Consensus size: 43
14862297 GATAAATCCC
* * * * *
14862307 GCAGGCCTAGTGCTGGT-AT-TATATTCAGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
14862348 GTAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGTCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
14862391 GCAGGCTTGGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
14862434 GCAGGC
1 GCAGGC
14862440 GTAATGCTGG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 13 0.16
42 2 0.03
43 64 0.81
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:14871955 original size:119 final size:119
Alignment explanation
Indices: 14871797--14872134 Score: 516
Period size: 119 Copynumber: 2.8 Consensus size: 119
14871787 TAGGCCGCAG
*
14871797 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATAATTTGGTATTCTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
*
14871862 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTTAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
* *
14871916 TATAGCAAATCTAGCTTTCAGATGTTTATACTGGAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
*
14871981 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGGCTCTCAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
* * * * * *
14872035 TATAGCAGATCCCA-CCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTAGTATCCTTGT
1 TATAGCAGAT-CTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
** * * *
14872099 ACTTACAAGGAACAAATCGAAGACATAGCTGATTTG
65 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTG
14872135 GCTTCCACAT
Statistics
Matches: 200, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
119 198 0.99
120 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (119 bp):
TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
Found at i:14874067 original size:30 final size:30
Alignment explanation
Indices: 14874033--14874113 Score: 74
Period size: 30 Copynumber: 2.6 Consensus size: 30
14874023 TTTCCCTCAA
* *
14874033 ATTATAATTATTTTACATCAAATTTTTTAT
1 ATTATAATTATTTTACATCAAATATTATAT
* * *
14874063 ATTATTATTATATTTTCA-CATATATTATAT
1 ATTATAATTAT-TTTACATCAAATATTATAT
14874093 ATTTACTAATTATTTATACAT
1 A-TTA-TAATTATTT-TACAT
14874114 GTCATTTTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
30 20 0.51
31 10 0.26
32 9 0.23
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (30 bp):
ATTATAATTATTTTACATCAAATATTATAT
Found at i:14882606 original size:25 final size:25
Alignment explanation
Indices: 14882571--14882689 Score: 132
Period size: 25 Copynumber: 4.8 Consensus size: 25
14882561 CGGATACTCC
* *
14882571 ATAGCTTGTGAGACCATACCGATTT
1 ATAGCTCGTGAGAGCATACCGATTT
* *
14882596 ATCGCTCGTGAGAGCATACCAATTT
1 ATAGCTCGTGAGAGCATACCGATTT
* *
14882621 ATAGCTTGTGAGAGCATACCGATCT
1 ATAGCTCGTGAGAGCATACCGATTT
* * * *
14882646 ACAGCTCGAGTGAGCATACCGATTC
1 ATAGCTCGTGAGAGCATACCGATTT
14882671 ATAGCTCGT-ATGAGCATAC
1 ATAGCTCGTGA-GAGCATAC
14882690 ATGTACATGA
Statistics
Matches: 76, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
25 76 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (25 bp):
ATAGCTCGTGAGAGCATACCGATTT
Found at i:14885547 original size:44 final size:41
Alignment explanation
Indices: 14885407--14885562 Score: 127
Period size: 42 Copynumber: 3.7 Consensus size: 41
14885397 AGCTCGTAAA
* * * * *
14885407 ATGCCAACGTCCCAG-CGTGATCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACTTGGTCTTACACGAAATC-AA-ATCG
* * *
14885449 ATTCCACTGTCCCAGA-TAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACT-TGGTCTTACACGAAATCAAAT-CG
* *
14885491 ATGCCAACGTCCCAGACTTGGTCATACACGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACTTGGTCTTACACG-AAATCA-AA-TCG
* *
14885535 ATGCCAATGTCCCAAACGTGGTCTTACA
1 ATGCCAATGTCCCAGACTTGGTCTTACA
14885563 TGATAGCACA
Statistics
Matches: 90, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.02
42 39 0.43
43 20 0.22
44 28 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACTTGGTCTTACACGAAATCAAATCG
Found at i:14891821 original size:40 final size:40
Alignment explanation
Indices: 14891728--14891945 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
14891718 AAGCCAAGTA
* * *
14891728 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
14891766 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14891806 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
14891846 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
14891886 CCTTTGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
*
14891927 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
14891946 TTATCATCCA
Statistics
Matches: 160, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 105 0.66
41 22 0.14
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:14894666 original size:13 final size:13
Alignment explanation
Indices: 14894648--14894678 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14894638 AAATAACCAA
*
14894648 AATTATCAAAATT
1 AATTATAAAAATT
14894661 AATTATAAAAATT
1 AATTATAAAAATT
14894674 AATTA
1 AATTA
14894679 AAATTCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
AATTATAAAAATT
Found at i:14898449 original size:30 final size:30
Alignment explanation
Indices: 14898394--14898450 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
14898384 CTTTTGAAAA
* * * *
14898394 TATTTACGAAAAGAGCCATCTAATTTTTAT
1 TATTTACAAAAAGAGCAACCAAATTTTTAT
14898424 TATTTACAAAAAGAGCAACCAAATTTT
1 TATTTACAAAAAGAGCAACCAAATTTT
14898451 AAAAATAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (30 bp):
TATTTACAAAAAGAGCAACCAAATTTTTAT
Found at i:14900411 original size:40 final size:40
Alignment explanation
Indices: 14900374--14900558 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
14900364 GCTACTCGTT
*
14900374 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
14900414 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
14900454 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
14900493 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14900534 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14900559 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14900485 original size:79 final size:82
Alignment explanation
Indices: 14900374--14900558 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
14900364 GCTACTCGTT
* *
14900374 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
14900437 GGATTTAGTAAC-TCGCA
65 GAATATAGTAACTTAGCA
* * **
14900454 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTTGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
14900517 AATATGGTCACTTAGCA
66 AATATAGTAACTTAGCA
14900534 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14900559 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
AATATAGTAACTTAGCA
Found at i:14906163 original size:41 final size:40
Alignment explanation
Indices: 14906118--14906198 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 40
14906108 ATTAATTAAG
*
14906118 TTAGAATTTAAACAGAAAATTAAACCAAAATACAAAACTAA
1 TTAGAATTTAAACAGAAAAGTAAACCAAAATAC-AAACTAA
* * *
14906159 TTAGAATTTATATAGAAAAGTAAACCAAAATGCAAACTAA
1 TTAGAATTTAAACAGAAAAGTAAACCAAAATACAAACTAA
14906199 CAAATTCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 7 0.19
41 29 0.81
ACGTcount: A:0.58, C:0.11, G:0.07, T:0.23
Consensus pattern (40 bp):
TTAGAATTTAAACAGAAAAGTAAACCAAAATACAAACTAA
Found at i:14907119 original size:21 final size:20
Alignment explanation
Indices: 14907095--14907136 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
14907085 TGAAATGCAA
14907095 TCAAACCAACATGAATTAAAT
1 TCAAACCAACATG-ATTAAAT
* *
14907116 TCAAGCTAACATGATTAAAT
1 TCAAACCAACATGATTAAAT
14907136 T
1 T
14907137 AACCATTCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
TCAAACCAACATGATTAAAT
Found at i:14917213 original size:43 final size:43
Alignment explanation
Indices: 14917126--14917249 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 43
14917116 AACTCGTACA
* * * *
14917126 ATGCC-ATATCTCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATAACG
* * * * *
14917168 ATGCTAATGTCCTAGACATGGTCTTACATGAAATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATAACG
14917211 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACAT
14917250 CTCGGTAATC
Statistics
Matches: 67, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 4 0.06
43 63 0.94
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATAACG
Found at i:14923113 original size:14 final size:15
Alignment explanation
Indices: 14923096--14923124 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14923086 ACACGAAAAT
14923096 TTCACACA-TATAAA
1 TTCACACATTATAAA
14923110 TTCACACATTATAAA
1 TTCACACATTATAAA
14923125 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:14928316 original size:43 final size:42
Alignment explanation
Indices: 14928268--14928415 Score: 138
Period size: 43 Copynumber: 3.5 Consensus size: 42
14928258 TATCCCAAAT
* * *
14928268 ATGGTCTTACATGTTATCAAATATCGATGCCAATGTCCCTTAC
1 ATGGTCTTACACGTAATCAAATATCGATGCCAATGT-CCTGAC
* *
14928311 ATGGTCTTACACGAAATCATATAAT-GATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAATCAAAT-ATCGATGCCAATGTCCT-GAC
* * * * *
14928354 ATGGTATTACACGTAATCATAATA-CTATGCTAATGTTCCAGGC
1 ATGGTCTTACACGTAATCA-AATATCGATGCCAATG-TCCTGAC
*
14928397 ATGGTCTTACATGTAATCA
1 ATGGTCTTACACGTAATCA
14928416 CATCTCGGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
42 3 0.03
43 76 0.88
44 7 0.08
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCTGAC
Found at i:14955269 original size:20 final size:20
Alignment explanation
Indices: 14955244--14955290 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
14955234 TTCTCTCACA
14955244 CCCGTGTAAGAAGGCCCACG
1 CCCGTGTAAGAAGGCCCACG
*
14955264 CCCGTGTATGAAGGCCCACG
1 CCCGTGTAAGAAGGCCCACG
14955284 CCCGTGT
1 CCCGTGT
14955291 CAATCTAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.19, C:0.36, G:0.30, T:0.15
Consensus pattern (20 bp):
CCCGTGTAAGAAGGCCCACG
Found at i:14969353 original size:19 final size:18
Alignment explanation
Indices: 14969321--14969359 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
14969311 GATTTCGTAC
*
14969321 TTTAGCCCATTTTCTCTGT
1 TTTAGCCCAGTTTCTC-GT
*
14969340 TTTAGGCCAGTTTCTCGT
1 TTTAGCCCAGTTTCTCGT
14969358 TT
1 TT
14969360 CTTTCACTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.10, C:0.23, G:0.15, T:0.51
Consensus pattern (18 bp):
TTTAGCCCAGTTTCTCGT
Found at i:14980414 original size:43 final size:43
Alignment explanation
Indices: 14980350--14980472 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 43
14980340 ATTGAGATGT
* * *
14980350 GATTACATGTAAGACCTTGTGTGGGACAGTGGCATTG-TATTAC
1 GATTACGTGTAAGACCTTGTGTGGGACAGTGGCATCGTTAAT-C
* *
14980393 GATTACGTGTAAGACCATGTGTGGGACA-TCCGCATCGTTAATC
1 GATTACGTGTAAGACCTTGTGTGGGACAGT-GGCATCGTTAATC
*
14980436 GATTTCGTGTAAGACCTTGTGTGGGACAGTGGCATCG
1 GATTACGTGTAAGACCTTGTGTGGGACAGTGGCATCG
14980473 ATACGTGTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 64 0.93
44 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCTTGTGTGGGACAGTGGCATCGTTAATC
Found at i:14990605 original size:40 final size:40
Alignment explanation
Indices: 14990550--14990629 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
14990540 CAAAATTTAT
14990550 CCTAAATAAGATATGAGAGCTTTTCAAGAGAACAAGGCAG
1 CCTAAATAAGATATGAGAGCTTTTCAAGAGAACAAGGCAG
*
14990590 CCTAAATACGATATGAGAGCTTTTCAAGAGAACAAGGCAG
1 CCTAAATAAGATATGAGAGCTTTTCAAGAGAACAAGGCAG
14990630 TCATATACCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.20
Consensus pattern (40 bp):
CCTAAATAAGATATGAGAGCTTTTCAAGAGAACAAGGCAG
Found at i:15014978 original size:16 final size:17
Alignment explanation
Indices: 15014928--15014978 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
15014918 ATAGAAATAT
*
15014928 AATCTTTAAGGATATGC
1 AATCTTGAAGGATATGC
*
15014945 AATCTTAGATATGATATGC
1 AATCTT-GA-AGGATATGC
15014964 AATCTTGAA-GATATG
1 AATCTTGAAGGATATG
15014979 ATCTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 14 0.47
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
AATCTTGAAGGATATGC
Found at i:15014997 original size:22 final size:21
Alignment explanation
Indices: 15014938--15014980 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
15014928 AATCTTTAAG
15014938 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
15014957 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
15014978 GAT
1 GAT
15014981 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:15015209 original size:14 final size:14
Alignment explanation
Indices: 15015190--15015220 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
15015180 CTGTGGTTTG
15015190 TTCTTATTTTATTC
1 TTCTTATTTTATTC
15015204 TTCTTATTTTATTC
1 TTCTTATTTTATTC
15015218 TTC
1 TTC
15015221 GTCTATCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (14 bp):
TTCTTATTTTATTC
Found at i:15020651 original size:19 final size:19
Alignment explanation
Indices: 15020623--15020673 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
15020613 CTTCTATTTC
15020623 AAAA-AAAAGGAAAAAAAT
1 AAAATAAAAGGAAAAAAAT
15020641 AAAATAAAAGGAAAAAAAT
1 AAAATAAAAGGAAAAAAAT
15020660 AAAATAAAA-GAAAA
1 AAAATAAAAGGAAAA
15020674 CCCTTGAGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.28
19 23 0.72
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (19 bp):
AAAATAAAAGGAAAAAAAT
Found at i:15021558 original size:44 final size:44
Alignment explanation
Indices: 15021498--15022212 Score: 544
Period size: 44 Copynumber: 16.3 Consensus size: 44
15021488 CAGAGAAACG
* *
15021498 AGATTTGGCATCCCTGTGTTTATAGGGAATAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * ***
15021542 AGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTT
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
15021587 AG--CATGACATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
15021630 AGATTTGGCATCCCTGTG-TTATAGGGAATAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * *** **
15021673 AGATCTGACA-CTCCTATGCTTACAACAAAGCAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
15021718 AG-TATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
15021761 ATATTTGGCATCACTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
15021805 AGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
15021850 AG--CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
15021893 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGA
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
15021937 AGATCTGACATTCCTGTGATTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
15021982 AG-TATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGT
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * *
15022025 AGATTTGGCATCACTGTGTTTATAGGGAACAAATCGAAGATAGA
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * ** **
15022069 AGATCTGACATTTCTATGCTTATAGCAAAGCAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* ** *
15022114 AG--CATGGTATCCCTGTGTTTATAGGGAACA-AGTTAAAGATAAC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * * *
15022157 AGATTTGGCATCCCTGTGTTTACAGGGAACAAATCAAAGATAAC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
*
15022201 AGATCTAGCATC
1 AGATCTGGCATC
15022213 TCCATTTCGA
Statistics
Matches: 520, Mismatches: 120, Indels: 62
0.74 0.17 0.09
Matches are distributed among these distances:
42 6 0.01
43 94 0.18
44 346 0.67
45 74 0.14
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:15021847 original size:132 final size:132
Alignment explanation
Indices: 15021498--15022206 Score: 1123
Period size: 132 Copynumber: 5.4 Consensus size: 132
15021488 CAGAGAAACG
* * *
15021498 AGATTTGGCATCCCTGTGTTTATAGGGAATAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
* *
15021563 ACAGCGAAGCAGATCGAAGATTTTAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
15021628 GC
131 GC
* * * *
15021630 AGATTTGGCATCCCTGTG-TTATAGGGAATAGATCGAAGATAGCAGATCTGACACTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
* * *
15021694 ACAACAAAGCAGATCGAAGATTTCAGTATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
15021759 GC
131 GC
* * *
15021761 ATATTTGGCATCACTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
*
15021826 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
15021891 GC
131 GC
* *
15021893 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGAAGATCTGACATTCCTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
*
15021958 ACAGCGAAGCAGATCGAAGATTTCAGTATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
15022023 GT
131 GC
* * * *
15022025 AGATTTGGCATCACTGTGTTTATAGGGAACAAATCGAAGATAGAAGATCTGACATTTCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
* * * *
15022090 ATAGCAAAGCAGATCGAAGATTTCAGCATGGTATCCCTGTGTTTATAGGGAACAAGTTAAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
15022155 AC
131 GC
* * *
15022157 AGATTTGGCATCCCTGTGTTTACAGGGAACAAATCAAAGATAACAGATCT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCT
15022207 AGCATCTCCA
Statistics
Matches: 537, Mismatches: 39, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
131 123 0.23
132 414 0.77
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:15022810 original size:19 final size:19
Alignment explanation
Indices: 15022786--15022864 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
15022776 AATCTTTAAG
*
15022786 GATATGAAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15022805 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15022824 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15022841 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT--AGATAT
15022862 GAT
1 GAT
15022865 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15022816 original size:36 final size:35
Alignment explanation
Indices: 15022776--15022863 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
15022766 ATGGAAATAT
15022776 AATCTTTAAGGATATGA-AATCTTAGATATGATATGC
1 AATC-TTAA-GATATGACAATCTTAGATATGATATGC
15022812 AATCTT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTAAGATATG--ACAATCTTAGATATGATATGC
15022848 AATCTTAAAGATATGA
1 AATCTT-AAGATATGA
15022864 TCTTGTAATC
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 3 0.06
36 30 0.64
38 7 0.15
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (35 bp):
AATCTTAAGATATGACAATCTTAGATATGATATGC
Found at i:15023093 original size:14 final size:14
Alignment explanation
Indices: 15023074--15023104 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
15023064 CTGTGGTTTG
15023074 TTCTTATTTTATTC
1 TTCTTATTTTATTC
15023088 TTCTTATTTTATTC
1 TTCTTATTTTATTC
15023102 TTC
1 TTC
15023105 GTCTATCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (14 bp):
TTCTTATTTTATTC
Found at i:15026009 original size:19 final size:18
Alignment explanation
Indices: 15025985--15026025 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
15025975 ATTATGGTTC
15025985 AAAATAAGCTGAAATATA
1 AAAATAAGCTGAAATATA
* *
15026003 TAAAATATGTTGAAATATA
1 -AAAATAAGCTGAAATATA
15026022 AAAA
1 AAAA
15026026 CGTAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (18 bp):
AAAATAAGCTGAAATATA
Found at i:15026701 original size:54 final size:54
Alignment explanation
Indices: 15026619--15026726 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
15026609 CACTTACTAT
15026619 TGAGCTTGAAAGCTTTGAAAAAACCCTAGCTATAGTGGACATACAAGGTTCGGC
1 TGAGCTTGAAAGCTTTGAAAAAACCCTAGCTATAGTGGACATACAAGGTTCGGC
15026673 TGAGCTTGAAAGCTTTGAAAAAACCCTAGCTATAGTGGACATACAAGGTTCGGC
1 TGAGCTTGAAAGCTTTGAAAAAACCCTAGCTATAGTGGACATACAAGGTTCGGC
15026727 CAAGGAAGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (54 bp):
TGAGCTTGAAAGCTTTGAAAAAACCCTAGCTATAGTGGACATACAAGGTTCGGC
Found at i:15029957 original size:43 final size:42
Alignment explanation
Indices: 15029901--15030030 Score: 154
Period size: 43 Copynumber: 3.0 Consensus size: 42
15029891 TGCTCGTACA
* * *
15029901 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATATCG
** * *
15029943 ATGCCACTGTCCCAGACATGGTCTTACACATAATCTCA-ATGCA
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
*
15029986 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAATCACATATCG
15030029 AT
1 AT
15030031 ATCCTAATGT
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 8 0.11
43 62 0.86
44 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:15034590 original size:79 final size:81
Alignment explanation
Indices: 15034457--15034638 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
15034447 AATGATGTCT
*
15034457 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
15034521 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
15034537 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
*
15034599 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
15034616 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
15034639 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATACTATAACC
Found at i:15034652 original size:40 final size:40
Alignment explanation
Indices: 15034457--15034638 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
15034447 AATGATGTCT
* * * *
15034457 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * *
15034497 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
15034537 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
15034576 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
15034616 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
15034639 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:15034660 original size:79 final size:79
Alignment explanation
Indices: 15034507--15034671 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
15034497 GGACTAAGAT
* **
15034507 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
15034572 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
15034586 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
15034649 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
15034665 CCGAAGG
1 CCGAAGG
15034672 TATGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:15034932 original size:47 final size:47
Alignment explanation
Indices: 15034863--15035077 Score: 331
Period size: 47 Copynumber: 4.6 Consensus size: 47
15034853 AGGGGTTGGT
15034863 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
15034910 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
15034957 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * **
15035004 AATGTGAAGGTGTATATATGTGACAGGGCCGAGTGGCCAACATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
15035051 GATGTGAAAGTGCATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
15035078 TCCCGAAGGG
Statistics
Matches: 154, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 154 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:15035252 original size:37 final size:37
Alignment explanation
Indices: 15035196--15035274 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
15035186 CCGAGCTCTA
* *
15035196 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
15035233 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
15035270 AAGAC
1 AAGAC
15035275 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:15042238 original size:42 final size:42
Alignment explanation
Indices: 15042157--15042378 Score: 177
Period size: 42 Copynumber: 5.2 Consensus size: 42
15042147 GTCCCAAATG
* * **
15042157 TGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACA
1 TGGTCTTACACGTAAATCAATA-CGATGCCGATGTCCCAGACA
*
15042200 GGGTCTTACACG-AAATCAGATACGATGCCGATGTCCCAGACA
1 TGGTCTTACACGTAAATCA-ATACGATGCCGATGTCCCAGACA
* * **
15042242 TGGTCTTATACGTAAATCTCAAT-CGAGGCCTG-TGTTTCAGACA
1 TGGTCTTACACGTAAA--TCAATACGATGCC-GATGTCCCAGACA
* * *
15042285 CGATCTTACACG-AAATCAGATACGATGCCGATGTCTCAGACA
1 TGGTCTTACACGTAAATCA-ATACGATGCCGATGTCCCAGACA
* * * *
15042327 TGGTCTTATACGTAAATCTCAAT-CGAGGCCTAT-TCCTAGACA
1 TGGTCTTACACGTAAA--TCAATACGATGCCGATGTCCCAGACA
*
15042369 CGGTCTTACA
1 TGGTCTTACA
15042379 TGATATCTCA
Statistics
Matches: 144, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
40 3 0.02
41 3 0.02
42 76 0.53
43 51 0.35
44 5 0.03
45 6 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
TGGTCTTACACGTAAATCAATACGATGCCGATGTCCCAGACA
Found at i:15042292 original size:85 final size:85
Alignment explanation
Indices: 15042194--15042357 Score: 301
Period size: 85 Copynumber: 1.9 Consensus size: 85
15042184 GCCTCTGTCC
* *
15042194 CAGACAGGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAAT
1 CAGACACGATCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAAT
15042259 CTCAATCGAGGCCTGTGTTT
66 CTCAATCGAGGCCTGTGTTT
*
15042279 CAGACACGATCTTACACGAAATCAGATACGATGCCGATGTCTCAGACATGGTCTTATACGTAAAT
1 CAGACACGATCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAAT
15042344 CTCAATCGAGGCCT
66 CTCAATCGAGGCCT
15042358 ATTCCTAGAC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (85 bp):
CAGACACGATCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAAT
CTCAATCGAGGCCTGTGTTT
Found at i:15049579 original size:41 final size:42
Alignment explanation
Indices: 15049521--15049641 Score: 138
Period size: 41 Copynumber: 2.9 Consensus size: 42
15049511 ATGCTATCTC
* *
15049521 ATATCGATGCCACTGTCCTAGACAGGGTCTTACACGAATCAA
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAATCAA
** * * *
15049563 ATA-CGATGCTGATGTCCCAGACATGGTCTTAAACGTAATCAC
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTACACG-AATCAA
*
15049605 ATATCGATGCCAATGTCCCAGA-TGTGGTCTTACACGA
1 ATATCGATGCCAATGTCCCAGACAG-GGTCTTACACGA
15049642 GAACACATAT
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
41 26 0.41
42 12 0.19
43 26 0.41
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAATCAA
Found at i:15049649 original size:43 final size:42
Alignment explanation
Indices: 15049484--15049652 Score: 162
Period size: 43 Copynumber: 4.0 Consensus size: 42
15049474 ATATCATACA
* * * *
15049484 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCG
1 ATGCCAATGTCCCAGATGTGGTCTTACACG-AATCACATATCG
* * * *
15049527 ATGCCACTGTCCTAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAGA-TGTGGTCTTACACGAATCACATATCG
** ** *
15049568 ATGCTGATGTCCCAGACATGGTCTTAAACGTAATCACATATCG
1 ATGCCAATGTCCCAGATGTGGTCTTACACG-AATCACATATCG
*
15049611 ATGCCAATGTCCCAGATGTGGTCTTACACGAGAACACATATC
1 ATGCCAATGTCCCAGATGTGGTCTTACACGA-ATCACATATC
15049653 AGAAACCCTA
Statistics
Matches: 99, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
41 24 0.24
42 15 0.15
43 59 0.60
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGATGTGGTCTTACACGAATCACATATCG
Found at i:15057646 original size:16 final size:18
Alignment explanation
Indices: 15057618--15057651 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15057608 TTAGAATTGG
15057618 ATTGAGAAAATT-ATTTA
1 ATTGAGAAAATTAATTTA
15057635 ATTGAG-AAATTAATTTA
1 ATTGAGAAAATTAATTTA
15057652 GTTTAACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (18 bp):
ATTGAGAAAATTAATTTA
Found at i:15064380 original size:18 final size:17
Alignment explanation
Indices: 15064341--15064383 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
15064331 ATTATTAAGA
*
15064341 ATAAATAAAAGAACAAG
1 ATAAATAAAAAAACAAG
* *
15064358 TTAAATAAAAAAATATAG
1 ATAAATAAAAAAACA-AG
15064376 ATAAATAA
1 ATAAATAA
15064384 TAACAATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (17 bp):
ATAAATAAAAAAACAAG
Found at i:15067187 original size:15 final size:15
Alignment explanation
Indices: 15067167--15067195 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15067157 GTTTGATAAA
15067167 CTAAAAAATTAAGTC
1 CTAAAAAATTAAGTC
15067182 CTAAAAAATTAAGT
1 CTAAAAAATTAAGT
15067196 ATTGAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (15 bp):
CTAAAAAATTAAGTC
Found at i:15069148 original size:111 final size:111
Alignment explanation
Indices: 15068956--15069159 Score: 304
Period size: 111 Copynumber: 1.8 Consensus size: 111
15068946 TTATTTTCAA
* * *
15068956 GTTTCCCTCTCTCTCTCTCTCTTTCTCTTTTTTTCTCACTTTCTTATTTCCTTTTGTCATCCCTT
1 GTTTCCCTCTCTCTCTCTCCCTTTCTCTTTTTTTCTCACTTTCTTATTTCCTTTTGCCATCCCCT
15069021 TTTTGCTAATTCCCAAGCAAATTTCTTTTTAAATTTCGTTCTCTCAT
66 TTTTGCTAATTCCCAAGCAAATTT-TTTTTAAATTTCGTTCTCTCAT
* * * *
15069068 GTTTCCCTCTCTCTGTCTCCCTTTCTC-TTTTTTCTCACTTTTTTGTTTCCTTTTGCCTTCCCCT
1 GTTTCCCTCTCTCTCTCTCCCTTTCTCTTTTTTTCTCACTTTCTTATTTCCTTTTGCCATCCCCT
*
15069132 TTTT-CTATTTCCCCAAGCAAATTTTTTT
66 TTTTGCTAATT-CCCAAGCAAATTTTTTT
15069160 CATTTTTGTT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
110 9 0.11
111 49 0.59
112 25 0.30
ACGTcount: A:0.10, C:0.30, G:0.05, T:0.55
Consensus pattern (111 bp):
GTTTCCCTCTCTCTCTCTCCCTTTCTCTTTTTTTCTCACTTTCTTATTTCCTTTTGCCATCCCCT
TTTTGCTAATTCCCAAGCAAATTTTTTTTAAATTTCGTTCTCTCAT
Found at i:15079351 original size:46 final size:46
Alignment explanation
Indices: 15079130--15079388 Score: 174
Period size: 46 Copynumber: 5.6 Consensus size: 46
15079120 TGTGTGCTAG
* * * ** * *
15079130 TGTAAGACATGTCTAGGACATGCATCGGCCACATTATG-AGAACCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTATAAGATGTA-AGCCAA
* * * * *
15079176 TATAAGACATTTCTGGGACATGCATCAGCTATAAGATGT--GTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTATAAGATGTAAGCCAA
* * *
15079220 TGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-AGAGCTAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TAAGATGTA-AGCCAA
* **
15079268 TGTAAGACTTGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-CTATAAGATGTAAGCCAA
* * * *
15079314 TGTAAGACATGCCTGGGACATGCATCGGCTAAAAGATGT--GTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTATAAGATGTAAGCCAA
* *
15079358 CGTGAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
15079389 ACTGGTATAT
Statistics
Matches: 169, Mismatches: 31, Indels: 26
0.75 0.14 0.12
Matches are distributed among these distances:
44 17 0.10
45 29 0.17
46 99 0.59
47 15 0.09
48 9 0.05
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTATAAGATGTAAGCCAA
Found at i:15079378 original size:138 final size:138
Alignment explanation
Indices: 15079125--15079389 Score: 372
Period size: 138 Copynumber: 1.9 Consensus size: 138
15079115 TTAGTTGTGT
* * * **
15079125 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAACCAGTATAAGACATTTCT
1 GCTAATGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAACCAATATAAGACATGCCT
* *
15079190 GGGACATGCATCAGCTATAAGATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG
66 GGGACATGCATCAGCTAAAAGATGTGTCAGCGTAAGACCATGTCTGGGACATGGCATCGGCATTG
15079255 AGACGAGA
131 AGACGAGA
* * * * *
15079263 GCTAATGTAAGACTTGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCCAATGTAAGACATGC
1 GCTAATGTAAGACATGTCTAGGACATGCATCGGCCAC-ATGATG-AGAACCAATATAAGACATGC
* *
15079326 CTGGGACATGCATCGGCTAAAAGATGTGTCAGCGTGAGACCATGTCTGGGACATGGCATCGGCA
64 CTGGGACATGCATCAGCTAAAAGATGTGTCAGCGTAAGACCATGTCTGGGACATGGCATCGGCA
15079390 CTGGTATATG
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
138 109 0.98
139 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (138 bp):
GCTAATGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAACCAATATAAGACATGCCT
GGGACATGCATCAGCTAAAAGATGTGTCAGCGTAAGACCATGTCTGGGACATGGCATCGGCATTG
AGACGAGA
Found at i:15087235 original size:23 final size:23
Alignment explanation
Indices: 15087220--15087268 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
15087210 TCATTGGAGT
15087220 TTAACGTTTCAGCTCAATAGAGC
1 TTAACGTTTCAGCTCAATAGAGC
* *
15087243 TTACCGTTTTAGCTCAATAGAGC
1 TTAACGTTTCAGCTCAATAGAGC
15087266 TTA
1 TTA
15087269 TTGTTCATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (23 bp):
TTAACGTTTCAGCTCAATAGAGC
Found at i:15097957 original size:20 final size:18
Alignment explanation
Indices: 15097921--15097957 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
15097911 ACGACCTTCT
15097921 GTGTTTGTGTGATTGTTC
1 GTGTTTGTGTGATTGTTC
15097939 GTGTTTGGTGTGCATTGTT
1 GTGTTT-GTGTG-ATTGTT
15097958 GCATTTGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.05, C:0.05, G:0.35, T:0.54
Consensus pattern (18 bp):
GTGTTTGTGTGATTGTTC
Found at i:15099208 original size:91 final size:90
Alignment explanation
Indices: 15099061--15099328 Score: 283
Period size: 91 Copynumber: 3.0 Consensus size: 90
15099051 ACACACCAGA
* ** * * *
15099061 TGCACATAGTGCAAACCCATAGGCTAAATATT-TTTCCTCGATAACACGCCATATTGCTCATAAG
1 TGCACATAGTGCAAACCCGTAGGCTAAATATTCTCCCCT-GATAACATGCTAGATTGCTCATAAG
*
15099125 AGCTTTCACACTGATATCA-TGCTAAAC
65 AGCTTTCACACCGATATCACT-C-AAAC
* * *
15099152 -GCACATAGTGCAAAGCCTGTAGGCTAAATATTCTCCCCTGATAACATGTTAGATTGCTCATAAA
1 TGCACATAGTGCAAA-CCCGTAGGCTAAATATTCTCCCCTGATAACATGCTAGATTGCTCATAAG
* *
15099216 AGCTTTCTCACCGATATCACTCCAAC
65 AGCTTTCACACCGATATCACTCAAAC
* ** * *
15099242 TGCATATAACGCAAAACCCGTAGGCTAAATATTCTTCCCC-AATAACATGGTAGATTGCTCATAA
1 TGCACATAGTGC-AAACCCGTAGGCTAAATATTC-TCCCCTGATAACATGCTAGATTGCTCATAA
* *
15099306 GAGCTTTCCCACCGATAACACTC
64 GAGCTTTCACACCGATATCACTC
15099329 TAGAATCTTT
Statistics
Matches: 150, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
90 17 0.11
91 120 0.80
92 13 0.09
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (90 bp):
TGCACATAGTGCAAACCCGTAGGCTAAATATTCTCCCCTGATAACATGCTAGATTGCTCATAAGA
GCTTTCACACCGATATCACTCAAAC
Done.