Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 57 of 349
Found at i:16609034 original size:22 final size:22
Alignment explanation
Indices: 16609009--16609053 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
16608999 ATAGATATAA
*
16609009 TAATAGGTATATAACATGGTAT
1 TAATAGGTATATAACATAGTAT
* * *
16609031 TAATATGTGTATAATATAGTAT
1 TAATAGGTATATAACATAGTAT
16609053 T
1 T
16609054 TAAATGTGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (22 bp):
TAATAGGTATATAACATAGTAT
Found at i:16610565 original size:40 final size:41
Alignment explanation
Indices: 16610510--16610586 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
16610500 ATCCGCTCCA
* *
16610510 CTGCTCCACTGCAACTT-AGTGAGATAAGGTTTGTTTTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTGAT
*
16610550 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTT
16610587 ATTCATAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 16 0.48
41 17 0.52
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (41 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTGAT
Found at i:16610993 original size:44 final size:44
Alignment explanation
Indices: 16610850--16611007 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 44
16610840 AATCATCAGC
* * *
16610850 CTGTTACCCTACTACTTA-GGGGTTTAGGCTCATC-GCTTTTGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCATCAAC-TTCGAT
* * ** ** * * *
16610893 CTATTTCCCTACTACTTAGGGGGTTAAGAATTGT-AAATTCAAC
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCATCAACTTCGAT
* * *
16610936 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCATCTTCGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCATCAACTTCGAT
*
16610980 CTGTTTCCCTACTGA-TTAGGGGGTTAAG
1 CTGTTACCCTACT-ACTTAGGGGGTTAAG
16611008 ATCTGTAAAT
Statistics
Matches: 84, Mismatches: 27, Indels: 7
0.71 0.23 0.06
Matches are distributed among these distances:
43 45 0.54
44 39 0.46
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (44 bp):
CTGTTACCCTACTACTTAGGGGGTTAAGGCTCATCAACTTCGAT
Found at i:16611327 original size:173 final size:172
Alignment explanation
Indices: 16610805--16611478 Score: 721
Period size: 175 Copynumber: 3.9 Consensus size: 172
16610795 TAAATTCAGC
* * *
16610805 CTGTTACCCTACTGCTTAAGGGGTTAAGGTCTGTAAATCATCAGCCTGTTACCCTACTACTTA-G
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAAT--TCAGCCTGTTACCCTACTACTTAGG
* * * * * * * * * *
16610869 GGGTTTAGGCTCATCGCTTTTGATCTATTTCCCTACTACTTAGGGGGTTAAGAAT-TGTAAATTC
64 GGGTTAAGGCCCATCGCCTTCGATCT-GTTCCCTACTGCTTAGGGAGATAAG-ATCTATAAATTT
* *
16610933 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCATCTTCGAT
127 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCT-ATGATCTTCGAT
* * * * **
16610980 CTGTTTCCCTACTGATTAGGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCATAAAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTACTTAGGGG
** * * *
16611045 GTTAAAGGCCCATAACCTTCGATCTGTTCCACCACTGATTAAGGAGATAAGATCTATAAATTTAG
66 GTT-AAGGCCCATCGCCTTCGATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTATAAATTTAG
16611110 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCT-TCG-TCTTCGAT
129 CCTGTTACCCTACTGCTTAGGGGTTTAAGG--CTAT-GATCTTCGAT
** * * ** * *
16611155 -TGGCTCTACTACTGCTTAGGGAGACAAGATCTATAAATTTAGCCTGTTACCCTACTACTTAGGG
1 CTGTTTC-CCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTACTTAGGG
* ** * * * * *
16611219 GGTTAAGGCCCTTCGTTTTTGATCTGCTCCATTACTGCTTAGGGAGACAAGATCTGT-AATTTAG
65 GGTTAAGGCCCATCGCCTTCGATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTATAAATTTAG
* *
16611283 CCTGTTACCCTACTGTTTAGGGGTTTAAGGTCTATGACCTTCGAT
129 CCTGTTACCCTACTGCTTAGGGGTTTAAGG-CTATGATCTTCGAT
* * *
16611328 CTATTTCCCTATTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTACTTAGGGG
* * * *
16611393 TTTAAGGCTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTTAGC
66 GTTAAGGCCCATCGCCTTCGATCTG-TTCCCTACTGCTTAGGGAGATAAGATCTATAAATTTAGC
16611458 CTGTTACCCTACTGCTTAGGG
130 CTGTTACCCTACTGCTTAGGG
16611479 AGATAAGGCT
Statistics
Matches: 407, Mismatches: 79, Indels: 27
0.79 0.15 0.05
Matches are distributed among these distances:
172 3 0.01
173 154 0.38
174 89 0.22
175 159 0.39
177 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (172 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTACTTAGGGG
GTTAAGGCCCATCGCCTTCGATCTGTTCCCTACTGCTTAGGGAGATAAGATCTATAAATTTAGCC
TGTTACCCTACTGCTTAGGGGTTTAAGGCTATGATCTTCGAT
Found at i:16611355 original size:44 final size:44
Alignment explanation
Indices: 16611284--16611448 Score: 158
Period size: 44 Copynumber: 3.8 Consensus size: 44
16611274 GTAATTTAGC
* * * *
16611284 CTGTTACCCTACTGTTTAGGGGTTTAAGGTCTATGACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATGACCTTCGAT
* * * ** *
16611328 CTATTTCCCTATTGCTTAGGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATGACCTTCGA-T
* * *
16611371 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTCATCG-CCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-AT-GACCTTCGAT
16611415 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT
16611449 AAATTTAGCC
Statistics
Matches: 93, Mismatches: 22, Indels: 12
0.73 0.17 0.09
Matches are distributed among these distances:
42 3 0.03
43 29 0.31
44 58 0.62
45 3 0.03
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATGACCTTCGAT
Found at i:16611488 original size:87 final size:87
Alignment explanation
Indices: 16610805--16611478 Score: 716
Period size: 87 Copynumber: 7.7 Consensus size: 87
16610795 TAAATTCAGC
* * * *
16610805 CTGTTACCCTACTGCTTAAGGGGTTAAGGTCTGTAAATCATCAGCCTGTTACCCTACTACTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAAT--TCAGCCTGTTACCCTACTGCTTAGG
* *
16610870 GGTTT-AGGCTCATCGCTTTTGAT
64 GGTTTAAGGCTCATCGCCTTCGAT
* * *
16610893 CTATTTCCCTACTACTTAGGGGGTTAAGAAT-TGTAAATTCAACCTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAG-ATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
**
16610957 GTTTAAGGCTCATCATCTTCGAT
65 GTTTAAGGCTCATCGCCTTCGAT
* * * *
16610980 CTGTTTCCCTACTGATTAGGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCATAAAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGC-TTAGGG
* * **
16611045 GTTAAAGGCCCATAACCTTCGAT
65 GTTTAAGGCTCATCGCCTTCGAT
* * * * * * *
16611068 CTG-TTCCACCACTGATTAAGGAGATAAGATCTATAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 CTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
* * *
16611132 GTTTAAGGCCCTTCGTCTTCGAT
65 GTTTAAGGCTCATCGCCTTCGAT
** * * ** * * *
16611155 -TGGCTCTACTACTGCTTAGGGAGACAAGATCTATAAATTTAGCCTGTTACCCTACTACTTAGGG
1 CTGTTTC-CCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
* * * ** *
16611219 GGTTAAGGCCCTTCGTTTTTGAT
65 GTTTAAGGCTCATCGCCTTCGAT
* * * ** * *
16611242 CTG-CTCCATTACTGCTTAGGGAGACAAGATCTGT-AATTTAGCCTGTTACCCTACTGTTTAGGG
1 CTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
16611305 GTTTAAGG-TCTAT-GACCTTCGAT
65 GTTTAAGGCTC-ATCG-CCTTCGAT
* *
16611328 CTATTTCCCTATTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
16611393 TTTAAGGCTCATCGCCTTCGAT
66 TTTAAGGCTCATCGCCTTCGAT
* *
16611415 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
16611479 AGATAAGGCT
Statistics
Matches: 501, Mismatches: 70, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
85 2 0.00
86 95 0.19
87 298 0.59
88 105 0.21
89 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (87 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
TTTAAGGCTCATCGCCTTCGAT
Found at i:16619343 original size:18 final size:18
Alignment explanation
Indices: 16619320--16619360 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
16619310 TCTTATATAT
16619320 ATATTATTAATTAATAAA
1 ATATTATTAATTAATAAA
*
16619338 ATATTATTATTTAATAAA
1 ATATTATTAATTAATAAA
16619356 ATATT
1 ATATT
16619361 TTACCATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATTATTAATTAATAAA
Found at i:16623693 original size:17 final size:18
Alignment explanation
Indices: 16623668--16623705 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
16623658 ACGAGCGAAG
*
16623668 ATAACAAAAAT-AAATAT
1 ATAAAAAAAATCAAATAT
*
16623685 ATAAAAAAAATCAATTAT
1 ATAAAAAAAATCAAATAT
16623703 ATA
1 ATA
16623706 CAATAACAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAAAAAAATCAAATAT
Found at i:16624310 original size:23 final size:22
Alignment explanation
Indices: 16624284--16624337 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
16624274 TGTATACGCG
16624284 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
16624307 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
16624329 TAC-TAATAA
1 TACATAATAA
16624338 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:16624318 original size:3 final size:3
Alignment explanation
Indices: 16624287--16624356 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
16624277 ATACGCGTAC
* * * *
16624287 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
16624334 ATA ATA CTA ATA AT- ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
16624357 CAAGGATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:16625715 original size:44 final size:45
Alignment explanation
Indices: 16625686--16626578 Score: 118
Period size: 44 Copynumber: 19.8 Consensus size: 45
16625676 CCTTTATTTT
*
16625686 AATCCACTCCACTGTAATCTCAGGCAGATAGGAT-TACTATCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * * * *
16625730 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATTTTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** *** * * *
16625776 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGA-AATTTTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** *** * **
16625822 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * * * *
16625866 AATCTGATGTGATCTACTCTACTATAA-CTTCAAAG-AGATAAGATCCT-TTAT-TTT
1 AATC---------C-ACTCCACTGTAATC-TC-AGGCAGATAAGAT-CTACTATCTTC
* * *
16625920 AATCCGCTCCACTGTAA-CTTCAGAG-AGATAGGAT-TACTAGCTTC
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGATCTACTATCTTC
* * **
16625964 AATCTACTCCGCTGTAATCTCAGAG-AGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAG-GCAGATAAGATCTACTATCTTC
** * * *
16626008 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA-AATTCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** * * * ** *
16626054 GGTCTACTCCCCTGTAACCTCAGGGTGATAAGA-C--CTGA--TGC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACT-ATCTTC
* * ** * *
16626095 GATCTACTCTGCTGTAA-CTTCAGAG-AGATAAGATCCT-TTAT-TTT
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGAT-CTACTATCTTC
* * * **
16626139 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * *
16626183 AATCTGATGTGATCTACTCTACTGTAA-CTTCAGAG-AGATAAGATCCT-TTAT-TTT
1 AATC---------C-ACTCCACTGTAATC-TCAG-GCAGATAAGAT-CTACTATCTTC
* * *
16626237 AATCCGCTCCACTGTAA-CTTCAGAG-AGATAGGAT-TACTAGCTTC
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGATCTACTATCTTC
* * **
16626281 AATCTACTCCGCTGTAATCTCAGAG-AGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAG-GCAGATAAGATCTACTATCTTC
** * * *
16626325 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTA-AATTCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTA-TCTTC
** * * * ** *
16626370 GGTCTACTCCCCTGTAACCTCAGGGTGATAAGA-C--CTGA--TGC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACT-ATCTTC
* * ** * *
16626411 GATCTACTCTGCTGTAA-CTTCAGAG-AGATAAGATCCT-TTAT-TTT
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGAT-CTACTATCTTC
* * *
16626455 AATCCGCTCCACTGTAA-CTTCAGAG-AGATAGGAT-TACTAGCTTC
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGATCTACTATCTTC
* * **
16626499 AATCTACTCCGCTGTAATCTCAGAG-AGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAG-GCAGATAAGATCTACTATCTTC
** * *
16626543 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT
16626579 GAAATTCTTC
Statistics
Matches: 654, Mismatches: 125, Indels: 140
0.71 0.14 0.15
Matches are distributed among these distances:
40 2 0.00
41 54 0.08
42 5 0.01
43 18 0.03
44 352 0.54
45 44 0.07
46 114 0.17
53 3 0.00
54 53 0.08
55 9 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
Found at i:16625797 original size:46 final size:46
Alignment explanation
Indices: 16625741--16625857 Score: 234
Period size: 46 Copynumber: 2.5 Consensus size: 46
16625731 ATCTACTCCG
16625741 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
16625787 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
16625833 CTGTAATCTCAGGGAGATAAGATCT
1 CTGTAATCTCAGGGAGATAAGATCT
16625858 CTGGCTTCAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (46 bp):
CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
Found at i:16626181 original size:317 final size:316
Alignment explanation
Indices: 16625829--16626503 Score: 1264
Period size: 317 Copynumber: 2.1 Consensus size: 316
16625819 TTCGGTCTGT
*
16625829 TCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTATAAC
1 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTATAAC
16625894 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
16625959 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
16626024 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
196 ACCTCAGGGAGATAAGATCT-AAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
16626089 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
260 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
*
16626146 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTATAAC
*
16626211 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
16626276 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
16626341 ACCTCAGGGAGATAAGATCTAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCT
196 ACCTCAGGGAGATAAGATCTAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCT
16626406 GATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
261 GATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
* *
16626462 TCCACTGTAA-CTTCAGAGAGATAGGAT-TACTAGCTTCAATCT
1 TCCACTGTAATC-TCAGGGAGATAGGATCT-CTGGCTTCAATCT
16626504 ACTCCGCTGT
Statistics
Matches: 351, Mismatches: 5, Indels: 5
0.97 0.01 0.01
Matches are distributed among these distances:
315 2 0.01
316 137 0.39
317 212 0.60
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (316 bp):
TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTATAAC
TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
ACCTCAGGGAGATAAGATCTAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCT
GATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
Found at i:16626265 original size:98 final size:98
Alignment explanation
Indices: 16626088--16626285 Score: 328
Period size: 98 Copynumber: 2.0 Consensus size: 98
16626078 GTGATAAGAC
*
16626088 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
16626153 TAATCTCAGGGAGATAGGATCT-CTGGCTTCAAT
66 TAATCTCAGAGAGATAGGAT-TACTAGCTTCAAT
*
16626186 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
16626251 TAA-CTTCAGAGAGATAGGATTACTAGCTTCAAT
66 TAATC-TCAGAGAGATAGGATTACTAGCTTCAAT
16626284 CT
1 CT
16626286 ACTCCGCTGT
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
97 2 0.02
98 92 0.98
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (98 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGAGAGATAGGATTACTAGCTTCAAT
Found at i:16626571 original size:218 final size:219
Alignment explanation
Indices: 16626186--16626707 Score: 994
Period size: 218 Copynumber: 2.4 Consensus size: 219
16626176 TGGCTTCAAT
* *
16626186 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
16626251 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
66 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
16626316 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATTCTTCGGTCTACTCC
131 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
16626380 CCTGTAACCTCAGGGTGATAAGAC
196 CCTGTAACCTCAGGGTGATAAGAC
16626404 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
16626469 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
66 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
16626534 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
131 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
16626599 CCTGTAACCTCAGGGTGATAAGAC
196 CCTGTAACCTCAGGGTGATAAGAC
16626623 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
16626688 TAA-TCTCAGGGAGATAGGAT
66 TAACT-TCAGAGAGATAGGAT
16626708 CTGAAATTCT
Statistics
Matches: 299, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
218 174 0.58
219 125 0.42
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (219 bp):
CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
CCTGTAACCTCAGGGTGATAAGAC
Found at i:16626664 original size:535 final size:538
Alignment explanation
Indices: 16625634--16626709 Score: 1777
Period size: 535 Copynumber: 2.0 Consensus size: 538
16625624 TGTGTTTTTG
*
16625634 TCTGCTGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACT
1 TCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACT
* *
16625699 GTAATCTCAGGCAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGAT
66 GTAATCTCAGGCAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGAT
** ** * * * **
16625764 CTGAAATTTTTCGGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGT
131 CT--AATGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTAC
* *
16625829 TCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTATAAC
194 TCCACTGTAACCTCAGGGAGATAAGA---------TC-A-CTGATGCGATCTACTCTACTATAAC
16625894 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
248 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
16625959 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
313 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
16626024 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
378 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
16626089 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
443 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
16626154 AATCTCAGGGAGATAGGATCTCTGGCTTCAA
508 AATCTCAGGGAGATAGGATCTCTGGCTTCAA
*
16626185 TCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACT
1 TCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACT
16626250 GTAA-CTTCAGAG-AGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAG
66 GTAATC-TCAG-GCAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAG
*
16626313 ATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATTCTTCGGTCTA
129 ATCTAAT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
* * * * *
16626376 CTCCCCTGTAACCTCAGGGTGATAAGA-C-CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGA
193 CTCCACTGTAACCTCAGGGAGATAAGATCACTGATGCGATCTACTCTACTATAACTTCAAAGAGA
16626439 TAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCT
258 TAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCT
16626504 ACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
323 ACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
16626569 GATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTGATGCGATC
388 GATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTGATGCGATC
16626634 TACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
453 TACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
16626699 AGATAGGATCT
518 AGATAGGATCT
16626710 GAAATTCTTT
Statistics
Matches: 501, Mismatches: 21, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
535 302 0.60
538 1 0.00
548 37 0.07
549 35 0.07
550 1 0.00
551 124 0.25
552 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (538 bp):
TCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACT
GTAATCTCAGGCAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGAT
CTAATGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTC
CACTGTAACCTCAGGGAGATAAGATCACTGATGCGATCTACTCTACTATAACTTCAAAGAGATAA
GATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACT
CCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGAT
AAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTGATGCGATCTAC
TCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGA
TAGGATCTCTGGCTTCAA
Found at i:16635387 original size:8 final size:8
Alignment explanation
Indices: 16635376--16635400 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
16635366 CCACCTACCC
16635376 CCCACTTG
1 CCCACTTG
16635384 CCCACTTG
1 CCCACTTG
16635392 CCCACTTG
1 CCCACTTG
16635400 C
1 C
16635401 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:16636398 original size:3 final size:3
Alignment explanation
Indices: 16636375--16636444 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
16636365 AATATCCTTG
* * *
16636375 TTA TT- TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
16636421 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
16636445 GTACGCGTAT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:16636441 original size:23 final size:22
Alignment explanation
Indices: 16636386--16636447 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
16636376 TATTTTATAT
*
16636386 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
16636407 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
16636429 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
16636448 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:16636454 original size:23 final size:23
Alignment explanation
Indices: 16636410--16636455 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
16636400 GTATTACTAT
**
16636410 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
16636433 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
16636456 CATGTATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:16636494 original size:20 final size:21
Alignment explanation
Indices: 16636469--16636508 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
16636459 GTATATATAT
16636469 TTTCA-TATTTAATATTTTTA
1 TTTCATTATTTAATATTTTTA
*
16636489 TTTCATTTTTTTAATATTTT
1 TTTCA-TTATTTAATATTTT
16636509 ATTATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
22 12 0.71
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTCATTATTTAATATTTTTA
Found at i:16636518 original size:22 final size:22
Alignment explanation
Indices: 16636476--16636518 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16636466 TATTTTCATA
*
16636476 TTTAATATTTTTATTTCATTTT
1 TTTAATATTTTTATTTAATTTT
16636498 TTTAATA-TTTTATTATAATTT
1 TTTAATATTTTTATT-TAATTT
16636519 ATATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTAATATTTTTATTTAATTTT
Found at i:16641548 original size:17 final size:18
Alignment explanation
Indices: 16641523--16641560 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
16641513 ACGAGCGAAG
*
16641523 ATAACAAAAAT-AAATAT
1 ATAAAAAAAATCAAATAT
*
16641540 ATAAAAAAAATCAATTAT
1 ATAAAAAAAATCAAATAT
16641558 ATA
1 ATA
16641561 CAATAACAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAAAAAAATCAAATAT
Found at i:16642159 original size:23 final size:22
Alignment explanation
Indices: 16642133--16642186 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
16642123 TGTATACGCG
16642133 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
16642156 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
16642178 TAC-TAATAA
1 TACATAATAA
16642187 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:16642167 original size:3 final size:3
Alignment explanation
Indices: 16642136--16642205 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
16642126 ATACGCGTAC
* * * *
16642136 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
16642183 ATA ATA CTA ATA AT- ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
16642206 CAAGGATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:16643185 original size:8 final size:8
Alignment explanation
Indices: 16643172--16643196 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
16643162 GGTGTTCGGC
16643172 GCAAGTGG
1 GCAAGTGG
16643180 GCAAGTGG
1 GCAAGTGG
16643188 GCAAGTGG
1 GCAAGTGG
16643196 G
1 G
16643197 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:16643636 original size:46 final size:46
Alignment explanation
Indices: 16643580--16643696 Score: 234
Period size: 46 Copynumber: 2.5 Consensus size: 46
16643570 ATCTACTCCG
16643580 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
16643626 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
16643672 CTGTAATCTCAGGGAGATAAGATCT
1 CTGTAATCTCAGGGAGATAAGATCT
16643697 CTGGCTTCAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (46 bp):
CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
Found at i:16643788 original size:44 final size:45
Alignment explanation
Indices: 16643716--16644323 Score: 287
Period size: 44 Copynumber: 13.6 Consensus size: 45
16643706 ATCTGATGTG
* *
16643716 ATCTACTCTACTGTAACTTCAAAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATTTTA
** * ** * *
16643760 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT--TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTA-TTTTA
* ** *
16643804 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTG--GCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATC-CTGTTATTTTA
* * * ** *
16643848 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATT-TT-A
* * * * ***
16643894 GTCTACTCC-CTGTAACCTCAGGGTGATAAGA-CCTG--A-TGCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATTTTA
**
16643934 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATTTTA
** * * *
16643978 ATCCGCTCCACTGTAA-TCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTG
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATC-CT-G-TT--AT-T--T-TA
*
16644032 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATTTTA
** * ** * *
16644076 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT--TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTA-TTTTA
* ** *
16644120 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTG--GCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATC-CTGTTATTTTA
* * * ** *
16644164 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATT-TT-A
* * * * * ***
16644210 GTCTACTCCCCTGTAACCTCAGGGTGATAAGA-CCTG--A-TGCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATTTTA
**
16644251 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATTTTA
**
16644295 ATCCGCTCCACTGTAACTTCAGAGAGATA
1 ATCTACTCCACTGTAACTTCAGAGAGATA
16644324 GGATTACTAG
Statistics
Matches: 431, Mismatches: 88, Indels: 90
0.71 0.14 0.15
Matches are distributed among these distances:
40 8 0.02
41 46 0.11
42 15 0.03
43 11 0.03
44 240 0.56
45 29 0.07
46 38 0.09
47 3 0.01
48 4 0.01
50 4 0.01
51 1 0.00
53 3 0.01
54 28 0.06
55 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTGTTATTTTA
Found at i:16644019 original size:316 final size:317
Alignment explanation
Indices: 16643668--16644340 Score: 1271
Period size: 316 Copynumber: 2.1 Consensus size: 317
16643658 TTCGGTCTGT
*
16643668 TCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
16643733 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
16643798 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
16643863 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACT-CCCTGTAACCTCAGGGTGATAAGACC
196 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
16643927 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
261 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
16643984 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
*
16644049 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
16644114 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
16644179 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
196 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
16644244 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
261 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
* *
16644301 TCCACTGTAA-CTTCAGAGAGATAGGAT-TACTAGCTTCAAT
1 TCCACTGTAATC-TCAGGGAGATAGGATCT-CTGGCTTCAAT
16644341 ATACTCCACT
Statistics
Matches: 350, Mismatches: 4, Indels: 5
0.97 0.01 0.01
Matches are distributed among these distances:
316 233 0.67
317 117 0.33
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (317 bp):
TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
Found at i:16644103 original size:98 final size:98
Alignment explanation
Indices: 16643926--16644123 Score: 328
Period size: 98 Copynumber: 2.0 Consensus size: 98
16643916 GTGATAAGAC
*
16643926 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
16643991 TAATCTCAGGGAGATAGGATCT-CTGGCTTCAAT
66 TAATCTCAGAGAGATAGGAT-TACTAGCTTCAAT
*
16644024 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
16644089 TAA-CTTCAGAGAGATAGGATTACTAGCTTCAAT
66 TAATC-TCAGAGAGATAGGATTACTAGCTTCAAT
16644122 CT
1 CT
16644124 ACTCCGCTGT
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
97 2 0.02
98 92 0.98
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (98 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGAGAGATAGGATTACTAGCTTCAAT
Found at i:16644442 original size:40 final size:41
Alignment explanation
Indices: 16644384--16644493 Score: 127
Period size: 40 Copynumber: 2.7 Consensus size: 41
16644374 CGTCTTCAAC
* * * ** *
16644384 CTACTCCAATATTGCTTAGGGAAATAAGATCTGTGGT-TG-T
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-TAATGCGAT
*
16644424 CTGCTCCACTACTGCTTAGGGAGATAAGA-CTTAATGCGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTTAATGCGAT
16644464 CTACTCCACTACTGCTTAGGGAGATAAGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGAT
16644494 TGTAATCTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.03
39 3 0.05
40 54 0.92
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (41 bp):
CTACTCCACTACTGCTTAGGGAGATAAGATCTTAATGCGAT
Found at i:16644793 original size:95 final size:95
Alignment explanation
Indices: 16644630--16644823 Score: 336
Period size: 95 Copynumber: 2.0 Consensus size: 95
16644620 AAGATCTACA
* *
16644630 ATCTTCAATCTATTCCACTGCCAATTACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCCATG
1 ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCCATG
16644695 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
* *
16644725 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACT-CCACT
1 ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCCA-T
16644789 GTAGTCAGGGAGGTAAAATCTGCCATCTTTG
65 GTAGTCAGGGAGGTAAAATCTGCCATCTTTG
16644820 ATCT
1 ATCT
16644824 ACTTCGCTGC
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
94 3 0.03
95 91 0.97
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCCATG
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:16644921 original size:45 final size:44
Alignment explanation
Indices: 16644861--16645019 Score: 104
Period size: 45 Copynumber: 3.4 Consensus size: 44
16644851 GATCTGCAAT
*
16644861 CTTCAATCTATTCCACTACCAAATACATGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACT-CCAAATACATGGAGATAGAATTATCGG
* ** * * * *
16644906 CTTCAATGTACTCCACT-GTAGTCACATGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTCCAAAT-ACATGGAGATAGAAT-T---ATC---G-G
* * *
16644958 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACT-CCAAATACATGGAGATAGAATTATCGG
*
16645003 CTTCAATGTACTCCACT
1 CTTCAATCTACTCCACT
16645020 TTAGTCAGGG
Statistics
Matches: 83, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
43 2 0.02
44 13 0.16
45 31 0.37
46 1 0.01
48 3 0.04
49 3 0.04
51 1 0.01
52 16 0.19
53 11 0.13
54 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTCCAAATACATGGAGATAGAATTATCGG
Found at i:16645046 original size:231 final size:229
Alignment explanation
Indices: 16644542--16645188 Score: 1107
Period size: 231 Copynumber: 2.8 Consensus size: 229
16644532 AGAACTACCA
* * * *
16644542 GCTTCAATGTACTCCACTGTAATCATGGAGGTAAAATCTGCCATCTTCGATCTGCTTTGCTGCCA
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
* * *
16644607 AATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAATTACAGGGAGATAGAGTT
66 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
16644672 ATCGGCTTCAATGTACTCC-CATGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCT
131 ATCGGCTTCAATGTACTCCAC-TGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCT
*
16644736 ATTCCACTGCCAAATGCAGAGAGATAGAGTTATCG
195 ATTCCACTGCCAAATACAGAGAGATAGAGTTATCG
* *
16644771 GCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTTCGCTGCCA
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
* *
16644836 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTACCAAATACATGGAGATAGAATT
66 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
*
16644901 ATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTTCAATC
131 ATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATC
*
16644966 TATTCCACTGCCAAATACAGGGAGATAGAGTTATCG
194 TATTCCACTGCCAAATACAGAGAGATAGAGTTATCG
*
16645002 GCTTCAATGTACTCCACTTTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
*
16645067 AATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
66 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
*
16645132 ATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATCT
131 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCT
16645189 GCTTCGCTGC
Statistics
Matches: 393, Mismatches: 22, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
229 173 0.44
230 1 0.00
231 219 0.56
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (229 bp):
GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTA
TTCCACTGCCAAATACAGAGAGATAGAGTTATCG
Found at i:16645111 original size:46 final size:46
Alignment explanation
Indices: 16645061--16645254 Score: 134
Period size: 46 Copynumber: 4.3 Consensus size: 46
16645051 ATCTGCTTCG
*
16645061 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* * ** * *
16645107 CTGCCAAATACAGGGA-G-ATAGAAT-TATC-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AG-ATCT-GCAATCTTCAATCTATTCCA
*** * * * * ** * *
16645152 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
16645195 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
16645241 CTGCCAAATACAGG
1 CTGCCAAATACAGG
16645255 GAGATAGAAT
Statistics
Matches: 105, Mismatches: 31, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
42 9 0.09
43 14 0.13
44 3 0.03
45 23 0.22
46 56 0.53
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:16645122 original size:134 final size:134
Alignment explanation
Indices: 16644956--16645324 Score: 675
Period size: 134 Copynumber: 2.7 Consensus size: 134
16644946 GCCATCTTTG
* *
16644956 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTT
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
16645021 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
16645086 TGTA
131 TGCA
16645090 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
16645155 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
16645220 TGCA
131 TGCA
16645224 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
16645289 TAGTCACATGGAGGTAAAATCTGCCATCTTTGATCT
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCT
16645325 TCAATCTATT
Statistics
Matches: 227, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
134 198 0.87
136 29 0.13
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCA
Found at i:16645235 original size:365 final size:365
Alignment explanation
Indices: 16644725--16645595 Score: 1591
Period size: 365 Copynumber: 2.4 Consensus size: 365
16644715 GCCATCTTTG
* * * *
16644725 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
16644790 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
16644855 TGCAATCTTCAATCTATTCCACTACCAAATACATGGAGATAGAATTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTACCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
16644920 ACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATACA
196 ACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATACA
16644985 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTTTAGTCAGGGAGGTAAAATCTGCCATCTTT
261 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTTTAGTCAGGGAGGTAAAATCTGCCATCTTT
*
16645050 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTA
326 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCA
16645090 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
16645155 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
16645220 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTACCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
16645285 ACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATACA
196 ACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATACA
16645350 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTTTAGTCAGGGAGGTAAAATCTGCCATCTTT
261 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTTTAGTCAGGGAGGTAAAATCTGCCATCTTT
16645415 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCA
326 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCA
16645455 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* * * * * *
16645520 TTGTCAGGGAGGTAAAATTTGCCATCTTCGATCTGCTTCGCTGTC-AGTGCAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
16645584 TGCTATCTTCAA
131 TGCAATCTTCAA
16645596 CCAGCTCTAC
Statistics
Matches: 490, Mismatches: 16, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
364 28 0.06
365 462 0.94
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (365 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCAATCTTCAATCTATTCCACTACCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
ACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATACA
GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTTTAGTCAGGGAGGTAAAATCTGCCATCTTT
GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCA
Found at i:16645288 original size:45 final size:45
Alignment explanation
Indices: 16645092--16645519 Score: 128
Period size: 45 Copynumber: 9.4 Consensus size: 45
16645082 GATCTGTAAT
*
16645092 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
* *** * * ** **
16645137 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAAT-TATCGG
** * * * * * **
16645180 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AG-ATCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAAT-TATC-GG
*
16645226 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
* * * * * * *
16645271 CTTCAATGTACTCCACTG--TAGTCACATGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAAT-ACAGGGAGATAGAAT-T---ATC---G-G
* *
16645323 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
* ** * * * ** **
16645368 CTTCAATGTACTCCACT--TTAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAAT-TATCGG
** * * * * * **
16645411 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AG-ATCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAAT-TATC-GG
*
16645457 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
*
16645502 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
16645520 TTGTCAGGGA
Statistics
Matches: 264, Mismatches: 88, Indels: 62
0.64 0.21 0.15
Matches are distributed among these distances:
42 23 0.09
43 32 0.12
44 14 0.05
45 77 0.29
46 77 0.29
47 4 0.02
48 3 0.01
49 3 0.01
51 1 0.00
52 17 0.06
53 11 0.04
54 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
Found at i:16645327 original size:231 final size:229
Alignment explanation
Indices: 16645090--16645553 Score: 847
Period size: 231 Copynumber: 2.0 Consensus size: 229
16645080 AAGATCTGTA
16645090 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
16645155 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
16645220 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
* *
16645285 ACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTG
196 ACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCG
* *
16645321 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTT
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
16645386 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
16645451 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
* *
16645516 ACTGTTGTCAGGGAGGTAAAATTTGCCATCTTCG
196 ACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
16645550 ATCT
1 ATCT
16645554 GCTTCGCTGT
Statistics
Matches: 226, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
229 27 0.12
231 199 0.88
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (229 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
ACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:16645479 original size:134 final size:133
Alignment explanation
Indices: 16645321--16645595 Score: 462
Period size: 134 Copynumber: 2.1 Consensus size: 133
16645311 GCCATCTTTG
*
16645321 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACT-
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
16645385 TTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
66 TT-GTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCC-AATACAGGAAGGCAAGAT
16645450 CTGCA
129 CTGCA
16645455 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* * * *
16645520 TTGTCAGGGAGGTAAAATTTGCCATCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCT
66 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCT
*
16645585 GCT
131 GCA
16645588 ATCTTCAA
1 ATCTTCAA
16645596 CCAGCTCTAC
Statistics
Matches: 133, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
133 28 0.21
134 103 0.77
135 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (133 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCT
GCA
Found at i:16645689 original size:86 final size:86
Alignment explanation
Indices: 16645543--16645720 Score: 266
Period size: 86 Copynumber: 2.1 Consensus size: 86
16645533 AAAATTTGCC
* * *
16645543 ATCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTA
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTACTA
* *
16645608 CAAACGAGAGTGGTAAGGTTT
66 CAAACGAGAGAGGCAAGGTTT
* * *
16645629 GTCTTCGATCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTA
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTACTA
* *
16645694 CGACCGAGAGAGGCAAGGTTT
66 CAAACGAGAGAGGCAAGGTTT
16645715 ATCTTC
1 ATCTTC
16645721 AATTTTTACT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 81 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (86 bp):
ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTACTA
CAAACGAGAGAGGCAAGGTTT
Found at i:16652471 original size:23 final size:22
Alignment explanation
Indices: 16652445--16652498 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
16652435 TGTATACGCG
16652445 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
16652468 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
16652490 TAC-TAATAA
1 TACATAATAA
16652499 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:16652479 original size:3 final size:3
Alignment explanation
Indices: 16652448--16652517 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
16652438 ATACGCGTAC
* * * *
16652448 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
16652495 ATA ATA CTA ATA AT- ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
16652518 CAAGGATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:16653499 original size:8 final size:8
Alignment explanation
Indices: 16653486--16653510 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
16653476 GGTGTTCGGC
16653486 GCAAGTGG
1 GCAAGTGG
16653494 GCAAGTGG
1 GCAAGTGG
16653502 GCAAGTGG
1 GCAAGTGG
16653510 G
1 G
16653511 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:16653666 original size:6 final size:6
Alignment explanation
Indices: 16653657--16653697 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
16653647 ATAAAATTAT
*
16653657 ATTTTA ATTTT- -TTTAA ATTTTA ATTTTA ATTTTA ATTTTA A
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA A
16653698 CCTATAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.10
6 28 0.90
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
ATTTTA
Found at i:16654353 original size:9 final size:8
Alignment explanation
Indices: 16654332--16654356 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
16654322 TATTCTCATC
16654332 ATTTTTAA
1 ATTTTTAA
16654340 ATTTTTAA
1 ATTTTTAA
16654348 ATTTTTAA
1 ATTTTTAA
16654356 A
1 A
16654357 AAATAGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATTTTTAA
Found at i:16654961 original size:21 final size:20
Alignment explanation
Indices: 16654937--16655001 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
16654927 TAACTAAAAG
16654937 AATATACAAACTAAAGTTGTA
1 AATATACAAACT-AAGTTGTA
*
16654958 AATACAGC-AA-TAAGTTGATGA
1 AATATA-CAAACTAAGTTG-T-A
*
16654979 AA-ATAAAAACTAAGTTGTA
1 AATATACAAACTAAGTTGTA
16654998 AATA
1 AATA
16655002 CTTGTAACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 13
0.69 0.06 0.25
Matches are distributed among these distances:
19 9 0.26
20 8 0.23
21 17 0.49
22 1 0.03
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.26
Consensus pattern (20 bp):
AATATACAAACTAAGTTGTA
Found at i:16654962 original size:19 final size:18
Alignment explanation
Indices: 16654940--16655002 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 18
16654930 CTAAAAGAAT
16654940 ATACAAACTAAAGTTGTAA
1 ATACAAACT-AAGTTGTAA
16654959 ATACAGCAA-TAAGTTGATGAAA
1 ATACA--AACTAAGTTG-T--AA
*
16654981 ATAAAAACTAAGTTGTAA
1 ATACAAACTAAGTTGTAA
16654999 ATAC
1 ATAC
16655003 TTGTAACCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
18 5 0.14
19 11 0.31
20 5 0.14
21 9 0.25
22 6 0.17
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.25
Consensus pattern (18 bp):
ATACAAACTAAGTTGTAA
Found at i:16658270 original size:2 final size:2
Alignment explanation
Indices: 16658263--16658297 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
16658253 ACCCTATTTC
*
16658263 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16658298 AACGTAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:16659597 original size:12 final size:13
Alignment explanation
Indices: 16659580--16659632 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
16659570 AGTTATATTG
16659580 TTTTATT-TTATA
1 TTTTATTATTATA
*
16659592 TTTTATTATTGTTA
1 TTTTATTATT-ATA
*
16659606 TTAATATTATTATA
1 TT-TTATTATTATA
*
16659620 TTTTATTTTTATA
1 TTTTATTATTATA
16659633 ATAGTGGTAC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
12 7 0.21
13 11 0.33
14 8 0.24
15 7 0.21
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (13 bp):
TTTTATTATTATA
Found at i:16661644 original size:29 final size:30
Alignment explanation
Indices: 16661589--16661650 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
16661579 TGTTTTATTC
* *
16661589 ATATATTTTCTTTTAAATCTATTTATGTAT
1 ATATATTTCCTTTCAAATCTATTTATGTAT
16661619 ATATATTTCCTTTCAAATCTA-TTATGTAT
1 ATATATTTCCTTTCAAATCTATTTATGTAT
16661648 ATA
1 ATA
16661651 GTTTATTCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 11 0.37
30 19 0.63
ACGTcount: A:0.32, C:0.10, G:0.03, T:0.55
Consensus pattern (30 bp):
ATATATTTCCTTTCAAATCTATTTATGTAT
Found at i:16665687 original size:19 final size:19
Alignment explanation
Indices: 16665663--16665707 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
16665653 ACGCCTTTTT
* *
16665663 TGCATT-CATTTCATGCATC
1 TGCATTACATTACAT-CATA
16665682 TGCATTACATTACATCATA
1 TGCATTACATTACATCATA
16665701 TGCATTA
1 TGCATTA
16665708 AAGTCTACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATTACATCATA
Found at i:16673964 original size:15 final size:15
Alignment explanation
Indices: 16673944--16673973 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16673934 AGGTTTGAAG
16673944 ATGGTACAAACCTTA
1 ATGGTACAAACCTTA
16673959 ATGGTACAAACCTTA
1 ATGGTACAAACCTTA
16673974 GCCAAAGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (15 bp):
ATGGTACAAACCTTA
Found at i:16674578 original size:178 final size:177
Alignment explanation
Indices: 16674276--16674784 Score: 586
Period size: 178 Copynumber: 2.9 Consensus size: 177
16674266 TTGTCTCCCT
* * * *
16674276 GAGATAGCAGTGGAGCAGATTGAAGACGGTGAATCTTATCTTTCTGAGGTAGTAGGGGAGCAGAT
1 GAGATAGCAGTGGAGCAAATTGAGGACGGTGAATCTTATCTTCCTGAGGTAGTAGGGGAGTAGAT
* * * * * *
16674341 TTTAGTCACCAGCCTTATTTCTCT-AGGGTAGCATGAGAGCAGGCTAAAGATTGTAGTCTTATCT
66 TTTAGCCACCAGCCTTATCTCTCTGA-AGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCT
* *
16674405 TCCTGAGGAAGCAAGGGAGCAAACTGAAGATTGTAGATG-TTGTC-TCGAG
130 TCCTGAGGAAGCAAGGGAGCAGACTGAAGATTGTAGATGATAG-CAT--AG
16674454 GAGATAGCAGTGGAGCAAATTGAGGACGGTGAATCTTATCTTCCTGAGGTAGTAGGGGAGTAGAT
1 GAGATAGCAGTGGAGCAAATTGAGGACGGTGAATCTTATCTTCCTGAGGTAGTAGGGGAGTAGAT
* * * *
16674519 TTTAGCCACCAGCCTTATCTCCCTGAAGTAGTAAGGGAGCAGGTTGAAGATTATAGTCTTATCTT
66 TTTAGCCACCAGCCTTATCTCTCTGAAGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTT
* * * *
16674584 CCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGA-GATAGCATTG
131 CCTGAGGAAGCAAGGGAGCAGACTGAAGATTGTAGATGATAGCATAG
* * * * *
16674630 G-G---GCA-T--ATCAAAATT--GG-C---AAATCTTATATTCAC-GAGATAGCAGGGGAGTAG
1 GAGATAGCAGTGGAGC-AAATTGAGGACGGTGAATCTTATCTTC-CTGAGGTAGTAGGGGAGTAG
*
16674681 ATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCAAGGGAGCAGACTGAAGATTGTAGTCTTATC
64 ATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATC
* *
16674746 TTCTTGAGGAAGCAAGGGAGCAGACTGAAGATTGGAGAT
129 TTCCTGAGGAAGCAAGGGAGCAGACTGAAGATTGTAGAT
16674785 CTTATCTCCC
Statistics
Matches: 290, Mismatches: 35, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
164 120 0.41
165 1 0.00
167 1 0.00
168 2 0.01
169 2 0.01
170 5 0.02
171 1 0.00
172 3 0.01
175 1 0.00
176 2 0.01
177 2 0.01
178 149 0.51
179 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (177 bp):
GAGATAGCAGTGGAGCAAATTGAGGACGGTGAATCTTATCTTCCTGAGGTAGTAGGGGAGTAGAT
TTTAGCCACCAGCCTTATCTCTCTGAAGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTT
CCTGAGGAAGCAAGGGAGCAGACTGAAGATTGTAGATGATAGCATAG
Found at i:16674744 original size:44 final size:45
Alignment explanation
Indices: 16674696--16674797 Score: 145
Period size: 44 Copynumber: 2.3 Consensus size: 45
16674686 AGCCACCAGC
* *
16674696 CTTATCTCTCTGAAGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
1 CTTATCTCTCTGAAGAAGCAAGGGAGCAGACTGAAGATTGGAGAT
*
16674740 CTTATCT-TCTTGAGGAAGCAAGGGAGCAGACTGAAGATTGGAGAT
1 CTTATCTCTC-TGAAGAAGCAAGGGAGCAGACTGAAGATTGGAGAT
*
16674785 CTTATCTCCCTGA
1 CTTATCTCTCTGA
16674798 GTAATTTGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
43 2 0.04
44 37 0.73
45 11 0.22
46 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (45 bp):
CTTATCTCTCTGAAGAAGCAAGGGAGCAGACTGAAGATTGGAGAT
Found at i:16676753 original size:28 final size:30
Alignment explanation
Indices: 16676721--16676789 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
16676711 TTCATGTTGT
* *
16676721 TTTATGCGTATAT-TTT-CTTTTAAATCTA
1 TTTATGCATATATATTTCCTTTCAAATCTA
*
16676749 TTTATGTATATATATTTCCTTTCAAATCTA
1 TTTATGCATATATATTTCCTTTCAAATCTA
*
16676779 -TTATGTATATA
1 TTTATGCATATA
16676790 GTTTATTTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 11 0.31
29 14 0.39
30 11 0.31
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.55
Consensus pattern (30 bp):
TTTATGCATATATATTTCCTTTCAAATCTA
Found at i:16676783 original size:29 final size:30
Alignment explanation
Indices: 16676729--16676789 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
16676719 GTTTTATGCG
* *
16676729 TATATTTTCTTTTAAATCTATTTATGTATA
1 TATATTTCCTTTCAAATCTATTTATGTATA
16676759 TATATTTCCTTTCAAATCTA-TTATGTATA
1 TATATTTCCTTTCAAATCTATTTATGTATA
16676788 TA
1 TA
16676790 GTTTATTTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (30 bp):
TATATTTCCTTTCAAATCTATTTATGTATA
Found at i:16676798 original size:27 final size:30
Alignment explanation
Indices: 16676729--16676789 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
16676719 GTTTTATGCG
*
16676729 TATAT-TTTC-TTTTAAATCTATTTATGTA
1 TATATATTTCATTTCAAATCTATTTATGTA
*
16676757 TATATATTTCCTTTCAAATCTA-TTATGTA
1 TATATATTTCATTTCAAATCTATTTATGTA
16676786 TATA
1 TATA
16676790 GTTTATTTCG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 5 0.17
29 15 0.50
30 10 0.33
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (30 bp):
TATATATTTCATTTCAAATCTATTTATGTA
Found at i:16678942 original size:6 final size:6
Alignment explanation
Indices: 16678931--16678959 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
16678921 TTTGAAGTGA
16678931 TCATCC TCATCC TCATCC TCATCC TCATC
1 TCATCC TCATCC TCATCC TCATCC TCATC
16678960 TTATCATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.48, G:0.00, T:0.34
Consensus pattern (6 bp):
TCATCC
Found at i:16681455 original size:17 final size:18
Alignment explanation
Indices: 16681423--16681460 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
16681413 GATATGATAC
* *
16681423 TAAAATTATTAAAAAATT
1 TAAAATTATAAAAAAAAT
16681441 TAAAA-TATAAAAAAAAT
1 TAAAATTATAAAAAAAAT
16681458 TAA
1 TAA
16681461 GGAAACATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAATTATAAAAAAAAT
Found at i:16681749 original size:23 final size:21
Alignment explanation
Indices: 16681706--16681750 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
16681696 AAAAGGTATC
16681706 TACAAATTAAATCTCTAAGAT
1 TACAAATTAAATCTCTAAGAT
*
16681727 TACAAGATTATATCTTCTAAGAT
1 TACAA-ATTAAATC-TCTAAGAT
16681750 T
1 T
16681751 GCATATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 7 0.33
23 9 0.43
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (21 bp):
TACAAATTAAATCTCTAAGAT
Found at i:16681798 original size:35 final size:37
Alignment explanation
Indices: 16681742--16681832 Score: 150
Period size: 35 Copynumber: 2.5 Consensus size: 37
16681732 GATTATATCT
16681742 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCATA
16681779 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCATA
16681815 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
16681833 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.37
36 16 0.31
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCATA
Found at i:16681807 original size:54 final size:53
Alignment explanation
Indices: 16681730--16681844 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 53
16681720 CTAAGATTAC
16681730 AAGATTATATCTTCTAAGATTGCATATCATATCTAAGATTGCA-ATCATATCT
1 AAGATTATATCTTCTAAGATTGCATATCATATCTAAGATTGCATATCATATCT
* *
16681782 AAGATTGTATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTATATC-T-TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCT
16681835 AAGATTATAT
1 AAGATTATAT
16681845 TTCCATATGA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
52 10 0.18
53 10 0.18
54 32 0.56
55 5 0.09
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (53 bp):
AAGATTATATCTTCTAAGATTGCATATCATATCTAAGATTGCATATCATATCT
Found at i:16681840 original size:17 final size:19
Alignment explanation
Indices: 16681742--16681832 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
16681732 GATTATATCT
16681742 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
16681761 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
16681779 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
16681796 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
16681815 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
16681833 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:16682244 original size:44 final size:45
Alignment explanation
Indices: 16682196--16682308 Score: 138
Period size: 44 Copynumber: 2.5 Consensus size: 45
16682186 TCTATCTTTG
*
16682196 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCT-TCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTATCTCCA
* * * * * *
16682240 ATCTGCTACCCGTCTAATACAAAGATGTCAAATCTGTTATCTCCG
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTATCTCCA
* *
16682285 ATTTGCTCCCCGTCTAATATAGAG
1 ATCTGCTCCCCGTCTAATACAGAG
16682309 GTGTCGAATC
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 33 0.58
45 24 0.42
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTATCTCCA
Found at i:16682319 original size:45 final size:45
Alignment explanation
Indices: 16682196--16682326 Score: 147
Period size: 45 Copynumber: 2.9 Consensus size: 45
16682186 TCTATCTTTG
* * * *
16682196 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCT-TCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCCA
* * *
16682240 ATCTGCTACCCGTCTAATACAAAGATGTCAAATCTGTTATCTCCG
1 ATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCCA
* * * * *
16682285 ATTTGCTCCCCGTCTAATATAGAGGTGTCGAATCTGTCATCT
1 ATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCT
16682327 TGGATCTGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 33 0.46
45 39 0.54
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCCA
Found at i:16682581 original size:78 final size:78
Alignment explanation
Indices: 16682447--16683026 Score: 860
Period size: 78 Copynumber: 7.4 Consensus size: 78
16682437 AGATCTGCTA
*
16682447 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCCTCAATGAAGGTCCA-AT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGAT
* *
16682511 CTGTTATGTCTTTG
65 CTGCTATGTCTTCG
*
16682525 ATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATC
*
16682590 TGCTGTGTCTTCG
66 TGCTATGTCTTCG
* *
16682603 ATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAAGGTCCA-AT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGAT
* *
16682667 CTGTTATGTCTTTG
65 CTGCTATGTCTTCG
** * *
16682681 ATCTGCTCCCTATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATC
* * *
16682746 TGATGTGTCTCCG
66 TGCTATGTCTTCG
16682759 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-AT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGAT
* * *
16682823 TTGTTATGTCTTTG
65 CTGCTATGTCTTCG
* * *
16682837 ATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGTTTCAATAAAGGTCAGATC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATC
*
16682902 TGCTGTGTCTTCG
66 TGCTATGTCTTCG
*
16682915 ATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATC
16682980 TGCTATGTCTTCG
66 TGCTATGTCTTCG
* * **
16682993 ATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
16683027 TGTTTCTTCG
Statistics
Matches: 451, Mismatches: 46, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
77 5 0.01
78 443 0.98
79 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATC
TGCTATGTCTTCG
Found at i:16682675 original size:156 final size:156
Alignment explanation
Indices: 16682367--16683026 Score: 1041
Period size: 156 Copynumber: 4.3 Consensus size: 156
16682357 TTAGATCTAC
*
16682367 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
*
16682432 AGGTCAGA--T-C--TG-C-T-AATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
66 AGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
*
16682489 TCTGCCTCAATGAAGGTCCAATCTGT
131 TCTGCTTCAATGAAGGTCCAATCTGT
*
16682515 TATGTCTTTGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
*
16682580 AGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCATCTTGGA
66 AGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
*
16682645 TCTGCTTTAATGAAGGTCCAATCTGT
131 TCTGCTTCAATGAAGGTCCAATCTGT
**
16682671 TATGTCTTTGATCTGCTCCCTATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
* * * *
16682736 AGGTTAGATATGATGTGTCTCCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
66 AGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
*
16682801 TCTGCTTCAATGAAGGTCCAATTTGT
131 TCTGCTTCAATGAAGGTCCAATCTGT
* * *
16682827 TATGTCTTTGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGTTTCAATAA
1 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
*
16682892 AGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCTTGGA
66 AGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
*
16682957 TCTGCTTCAATGAAGGT-CAGATCTGC
131 TCTGCTTCAATGAAGGTCCA-ATCTGT
* * * **
16682983 TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
16683027 TGTTTCTTCG
Statistics
Matches: 469, Mismatches: 34, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
148 71 0.15
150 1 0.00
151 1 0.00
153 2 0.00
154 1 0.00
155 3 0.01
156 390 0.83
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (156 bp):
TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
AGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
TCTGCTTCAATGAAGGTCCAATCTGT
Found at i:16682773 original size:234 final size:232
Alignment explanation
Indices: 16682352--16683026 Score: 956
Period size: 234 Copynumber: 2.9 Consensus size: 232
16682342 GTAAACACAC
* *
16682352 GAAGGTTAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* *
16682417 GATCTGCTTCAATGAAGGTCAGATC---TG-C--TAATCTGCTCCCCGTCTAATACAGAGATGCC
66 GATCTGCTTTAATGAAGGTCAGATCTGTTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCC
* * * *
16682476 AAATCATCTTGGATCTGCCTCAATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTCCCCGTCT
131 AAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGATATGTCTTCGATCTGCTCCCCGTCT
16682540 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
195 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
* *
16682578 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
**
16682643 GATCTGCTTTAATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCTATCTAATACAGAGAT
66 GATCTGCTTTAATGAAGGT-CAGATCTG-T-TGTCTTTGATCTGCTCCCCGTCTAATACAGAGAT
* * * *
16682707 GCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATATGATGTGTCTCCGATCTGCTCCCCGT
128 GCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGATATGTCTTCGATCTGCTCCCCGT
16682772 CTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
193 CTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
* * * *
16682812 GAAGGTCCA-ATTTGTTATGTCTTTGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTT
1 GAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
* * *
16682876 GGATCTG-TTTCAATAAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTTTAATACAGAGA
65 GGATCTGCTTT-AATGAAGGTCAGATCTG-T-TGTCTTTGATCTGCTCCCCGTCTAATACAGAGA
* *
16682940 TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCG
127 TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGATATGTCTTCGATCTGCTCCCCG
* **
16683005 TCGAATATGGAGATGCCAAATC
192 TCTAATACAGAGATGCCAAATC
16683027 TGTTTCTTCG
Statistics
Matches: 398, Mismatches: 38, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
226 82 0.21
227 2 0.01
231 2 0.01
232 1 0.00
233 6 0.02
234 303 0.76
235 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (232 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTTAATGAAGGTCAGATCTGTTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCC
AAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGATATGTCTTCGATCTGCTCCCCGTCTA
ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
Found at i:16684480 original size:30 final size:32
Alignment explanation
Indices: 16684446--16684508 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
16684436 TCCTAATTTG
16684446 GCATCC-TTTTCCTCT-AAGTCCTTCTGAATA
1 GCATCCATTTTCCTCTAAAGTCCTTCTGAATA
16684476 GCATCCATTTTCCTCTAAAGTCCTTCTGAATA
1 GCATCCATTTTCCTCTAAAGTCCTTCTGAATA
16684508 G
1 G
16684509 GGAGGATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 6 0.19
31 9 0.29
32 16 0.52
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (32 bp):
GCATCCATTTTCCTCTAAAGTCCTTCTGAATA
Found at i:16695185 original size:17 final size:17
Alignment explanation
Indices: 16695163--16695221 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
16695153 ATTACAAAAT
16695163 TATATCTTCTAAGATTG
1 TATATCTTCTAAGATTG
16695180 TATATCATATCTAAGATTG
1 TATATC-T-TCTAAGATTG
*
16695199 TATCAT-ATCTAAGATTG
1 TAT-ATCTTCTAAGATTG
*
16695216 CATATC
1 TATATC
16695222 ATTGAAGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
16 2 0.06
17 18 0.50
18 1 0.03
19 13 0.36
20 2 0.06
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (17 bp):
TATATCTTCTAAGATTG
Found at i:16695194 original size:19 final size:18
Alignment explanation
Indices: 16695170--16695223 Score: 83
Period size: 17 Copynumber: 2.9 Consensus size: 18
16695160 AATTATATCT
16695170 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
16695189 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
16695206 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
16695224 TGAAGATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.52
19 16 0.48
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:16698297 original size:24 final size:24
Alignment explanation
Indices: 16698240--16698285 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
16698230 AAACCAAACT
16698240 AGTTTAATAAATTTGTTTCGTAGA
1 AGTTTAATAAATTTGTTTCGTAGA
16698264 AGTTTAATAAATTTGTTTCGTA
1 AGTTTAATAAATTTGTTTCGTA
16698286 CATTGTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (24 bp):
AGTTTAATAAATTTGTTTCGTAGA
Found at i:16699822 original size:7 final size:7
Alignment explanation
Indices: 16699810--16699857 Score: 71
Period size: 7 Copynumber: 6.9 Consensus size: 7
16699800 TTGAGAACTG
16699810 AAAATTA
1 AAAATTA
16699817 AAAATTA
1 AAAATTA
16699824 AAAATTA
1 AAAATTA
*
16699831 AAGATTA
1 AAAATTA
16699838 AAAA-TA
1 AAAATTA
16699844 TAAAATTA
1 -AAAATTA
16699852 AAAATT
1 AAAATT
16699858 GGAGATTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 2 0.05
7 33 0.89
8 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (7 bp):
AAAATTA
Found at i:16708408 original size:50 final size:49
Alignment explanation
Indices: 16708237--16708464 Score: 252
Period size: 49 Copynumber: 4.7 Consensus size: 49
16708227 GGGTAAAATA
* * ** * * *
16708237 CCGACGCCATGTCCC-GAACATGGTCTTACACTGGCTCACAAATC-AAAG
1 CCGATGCCATGTCCCAG-ACATGGTCTTACACTAGCTTTCATATCTCAGG
* * *
16708285 TCGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATATCTCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCAGG
16708334 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTC-AGG
* * * * *
16708384 CCGATGTCATGTCCCAAACATGGTCTTACACTGGCTCTCATA-AT-ATGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCA-GG
16708432 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC
16708465 ACACATATCA
Statistics
Matches: 158, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
46 12 0.08
47 14 0.09
48 43 0.27
49 49 0.31
50 40 0.25
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCAGG
Found at i:16708413 original size:99 final size:96
Alignment explanation
Indices: 16708286--16708464 Score: 252
Period size: 99 Copynumber: 1.8 Consensus size: 96
16708276 AAATCAAAGT
* * * *
16708286 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCAT-ATCTCAAGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAT--AGCCGATG-CATGTCCCA
16708350 GACATGGTCTTACACTAGCTTTCATATCTCGAGGC
63 GACAT-GTCTTACACTAGCTTTCATATCTCGAGGC
* * *
16708385 CGATGTCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATATAGCCGATGCATGTCCCAGAC
16708450 ATGTCTTACACTAGC
66 ATGTCTTACACTAGC
16708465 ACACATATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
96 13 0.18
97 14 0.19
98 7 0.10
99 35 0.49
100 3 0.04
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATATAGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTTTCATATCTCGAGGC
Found at i:16709357 original size:12 final size:13
Alignment explanation
Indices: 16709326--16709356 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
16709316 TCCAAAAATA
16709326 CAAAAATGACCAT
1 CAAAAATGACCAT
16709339 CAAAAATGACCAT
1 CAAAAATGACCAT
16709352 CAAAA
1 CAAAA
16709357 TCACTTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.58, C:0.23, G:0.06, T:0.13
Consensus pattern (13 bp):
CAAAAATGACCAT
Found at i:16714839 original size:33 final size:32
Alignment explanation
Indices: 16714727--16714866 Score: 149
Period size: 33 Copynumber: 4.3 Consensus size: 32
16714717 ATGGTAAAAT
** *
16714727 TTGAAAAGGTTAGGTAAACTTTGTGTATACCA
1 TTGAAAAGGAAAGGTATACTTTGTGTATACCA
* * *
16714759 TACGAAAAGGAAAGATATACTTTGTGTATATCA
1 T-TGAAAAGGAAAGGTATACTTTGTGTATACCA
16714792 TATGAAAAGGAAAGGTATACTTTGTGTATACCA
1 T-TGAAAAGGAAAGGTATACTTTGTGTATACCA
* *
16714825 CTTGAAAAGGAAAGGTACACTATATGTGTACA-C-
1 -TTGAAAAGGAAAGGTATACT-T-TGTGTATACCA
16714858 TTGAAAAGG
1 TTGAAAAGG
16714867 TTATGTGCAC
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
32 10 0.11
33 73 0.78
34 3 0.03
35 7 0.08
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.29
Consensus pattern (32 bp):
TTGAAAAGGAAAGGTATACTTTGTGTATACCA
Found at i:16714905 original size:33 final size:32
Alignment explanation
Indices: 16714823--16714942 Score: 123
Period size: 33 Copynumber: 3.7 Consensus size: 32
16714813 TTGTGTATAC
** * *
16714823 CACTTGAAAAGGAAAGGTACACTATATGTGTA
1 CACTTGAAAAGGGTATGTACACTTTATGTGTA
* *
16714855 CACTTGAAAAGGTTATGTGCACTTTATGTGTA
1 CACTTGAAAAGGGTATGTACACTTTATGTGTA
* **
16714887 CAAATTGAAAAGGGTATGTACACTTCGTGTGTA
1 C-ACTTGAAAAGGGTATGTACACTTTATGTGTA
* *
16714920 CCACTTGAAAAGGGAATTTACAC
1 -CACTTGAAAAGGGTATGTACAC
16714943 CTCGGGTGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
32 28 0.38
33 44 0.60
34 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (32 bp):
CACTTGAAAAGGGTATGTACACTTTATGTGTA
Found at i:16714952 original size:33 final size:33
Alignment explanation
Indices: 16714882--16714965 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
16714872 TGCACTTTAT
* * * *
16714882 GTGTACAAATTGAAAAGGGTATGTACACTTCGT
1 GTGTACAACTTGAAAAGGGAATGTACACCTCGG
* *
16714915 GTGTACCACTTGAAAAGGGAATTTACACCTCGG
1 GTGTACAACTTGAAAAGGGAATGTACACCTCGG
*
16714948 GTGTACAACTAGAAAAGG
1 GTGTACAACTTGAAAAGG
16714966 AAAGGTCTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (33 bp):
GTGTACAACTTGAAAAGGGAATGTACACCTCGG
Found at i:16730354 original size:98 final size:98
Alignment explanation
Indices: 16730185--16730382 Score: 351
Period size: 98 Copynumber: 2.0 Consensus size: 98
16730175 TTGTGGGATA
* *
16730185 TGTGGCATACAATAAGAGTATCTCGTATATGTTTTAAGTACTTACTACAAGTGGTATGTTTATAC
1 TGTGGCATACAATAAGAATATCTCGTATATGTTTTAAGTACTTACTACAAGTGGTACGTTTATAC
16730250 TTGTGTGATGAATGTATGCTTTAGTTAATATTT
66 TTGTGTGATGAATGTATGCTTTAGTTAATATTT
* * *
16730283 TGTGGCATATAATAGGAATATTTCGTATATGTTTTAAGTACTTACTACAAGTGGTACGTTTATAC
1 TGTGGCATACAATAAGAATATCTCGTATATGTTTTAAGTACTTACTACAAGTGGTACGTTTATAC
16730348 TTGTGTGATGAATGTATGCTTTAGTTAATATTT
66 TTGTGTGATGAATGTATGCTTTAGTTAATATTT
16730381 TG
1 TG
16730383 CTTGTTCATG
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (98 bp):
TGTGGCATACAATAAGAATATCTCGTATATGTTTTAAGTACTTACTACAAGTGGTACGTTTATAC
TTGTGTGATGAATGTATGCTTTAGTTAATATTT
Found at i:16732320 original size:19 final size:19
Alignment explanation
Indices: 16732296--16732393 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
16732286 AATCTTTAAG
16732296 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16732315 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16732334 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16732351 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16732370 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
16732391 GAT
1 GAT
16732394 CTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:16732326 original size:36 final size:35
Alignment explanation
Indices: 16732286--16732393 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 35
16732276 ATGGAAATAT
16732286 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
16732322 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
16732358 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
16732394 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 28 0.46
37 1 0.02
38 7 0.11
40 10 0.16
41 6 0.10
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:16738064 original size:8 final size:7
Alignment explanation
Indices: 16738051--16738120 Score: 65
Period size: 7 Copynumber: 9.7 Consensus size: 7
16738041 TCTATTTCAA
16738051 AAAAAAGG
1 AAAAAA-G
16738059 AAAAAA-
1 AAAAAAG
16738065 ATAAAAA-
1 A-AAAAAG
16738072 AAAAAAG
1 AAAAAAG
16738079 AAAAAA-
1 AAAAAAG
16738085 ATAAAAAG
1 A-AAAAAG
16738093 AAAAAAG
1 AAAAAAG
16738100 AGAAAAATG
1 A-AAAAA-G
*
16738109 GAAAAAG
1 AAAAAAG
16738116 AAAAA
1 AAAAA
16738121 TGGAAAGGCT
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
6 7 0.13
7 29 0.54
8 17 0.31
9 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:16738075 original size:21 final size:21
Alignment explanation
Indices: 16738049--16738106 Score: 91
Period size: 20 Copynumber: 2.7 Consensus size: 21
16738039 CTTCTATTTC
16738049 AAAAAAAAGGAAAAAAATAAA
1 AAAAAAAAGGAAAAAAATAAA
16738070 AAAAAAAA-GAAAAAAATAAA
1 AAAAAAAAGGAAAAAAATAAA
16738090 AAGAAAAAAGAGAAAAA
1 AA-AAAAAAG-GAAAAA
16738107 TGGAAAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.41
21 14 0.41
23 6 0.18
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.03
Consensus pattern (21 bp):
AAAAAAAAGGAAAAAAATAAA
Found at i:16738103 original size:9 final size:8
Alignment explanation
Indices: 16738050--16738106 Score: 51
Period size: 9 Copynumber: 6.6 Consensus size: 8
16738040 TTCTATTTCA
16738050 AAAAAAAGG
1 AAAAAAA-G
*
16738059 AAAAAAAT
1 AAAAAAAG
*
16738067 AAAAAAAA
1 AAAAAAAG
*
16738075 AAAGAAAAA
1 AAA-AAAAG
16738084 AATAAAAAG
1 AA-AAAAAG
16738093 AAAAAAGAG
1 AAAAAA-AG
16738102 AAAAA
1 AAAAA
16738107 TGGAAAAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
8 14 0.33
9 27 0.64
10 1 0.02
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:16738113 original size:23 final size:21
Alignment explanation
Indices: 16738051--16738120 Score: 97
Period size: 21 Copynumber: 3.2 Consensus size: 21
16738041 TCTATTTCAA
16738051 AAAAAAGGAAAAAAATAAAAA-
1 AAAAAA-GAAAAAAATAAAAAG
16738072 AAAAAAGAAAAAAATAAAAAG
1 AAAAAAGAAAAAAATAAAAAG
*
16738093 AAAAAAGAGAAAAATGGAAAAAG
1 AAAAAAGAAAAAAAT--AAAAAG
16738116 AAAAA
1 AAAAA
16738121 TGGAAAGGCT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
20 14 0.31
21 20 0.44
23 11 0.24
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (21 bp):
AAAAAAGAAAAAAATAAAAAG
Found at i:16738117 original size:14 final size:15
Alignment explanation
Indices: 16738095--16738126 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
16738085 ATAAAAAGAA
16738095 AAAAGAGAAAAATGG
1 AAAAGAGAAAAATGG
16738110 AAAA-AGAAAAATGG
1 AAAAGAGAAAAATGG
16738124 AAA
1 AAA
16738127 GGCTAAAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (15 bp):
AAAAGAGAAAAATGG
Found at i:16739172 original size:44 final size:44
Alignment explanation
Indices: 16738973--16739466 Score: 346
Period size: 44 Copynumber: 11.2 Consensus size: 44
16738963 CAAAGAAACA
* *
16738973 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGCAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * * * ***
16739017 AAATCTGACA-CTTCTGTGCTTACAGCGAAGC-AGATCGAAGATTTT
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
** * **
16739062 A-ACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
*
16739105 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* *
16739148 AGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * **
16739192 AGATCTGACATTCCC-GTGCTTACAGCGAAGC-AGATCGAAGATTTC
1 AGATTTGGCA-TCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
* *
16739237 AGCA--TGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * *
16739280 AGATTTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* ** * * * * * **
16739324 AGATCTGATATTCCTGTGCTTACAGCGAAGC-AGATAGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
*
16739369 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * *
16739412 AGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAG--ATAGC
*
16739458 TGATTTGGC
1 AGATTTGGC
16739467 TTTCACGGTT
Statistics
Matches: 349, Mismatches: 76, Indels: 48
0.74 0.16 0.10
Matches are distributed among these distances:
42 3 0.01
43 77 0.22
44 218 0.62
45 36 0.10
46 15 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
Found at i:16739263 original size:132 final size:132
Alignment explanation
Indices: 16739096--16739451 Score: 622
Period size: 132 Copynumber: 2.7 Consensus size: 132
16739086 GGAACAAGTT
16739096 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
*
16739161 TTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCCGTGCTTACAGCGAAGCAGA
66 TTGTGTTTATAGGGAACAAATCGAAGATAGAAGATCTGACATTCCCGTGCTTACAGCGAAGCAGA
*
16739226 TC
131 TA
*
16739228 GAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
* * * *
16739293 CTGTGTTTATAGAGAACAAATCGAAGATAGAAGATCTGATATTCCTGTGCTTACAGCGAAGCAGA
66 TTGTGTTTATAGGGAACAAATCGAAGATAGAAGATCTGACATTCCCGTGCTTACAGCGAAGCAGA
16739358 TA
131 TA
16739360 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
* * *
16739425 TTGTGCTTACAAGGAACAAATCGAAGA
66 TTGTGTTTATAGGGAACAAATCGAAGA
16739452 CATAGCTGAT
Statistics
Matches: 211, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 211 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
TTGTGTTTATAGGGAACAAATCGAAGATAGAAGATCTGACATTCCCGTGCTTACAGCGAAGCAGA
TA
Found at i:16739264 original size:175 final size:175
Alignment explanation
Indices: 16738972--16739327 Score: 554
Period size: 175 Copynumber: 2.0 Consensus size: 175
16738962 TCAAAGAAAC
* *
16738972 AAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGCAGATAGCAAATCTGACACTTCTGTGCT
1 AAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTGACACTTCCGTGCT
* *
16739037 TACAGCGAAGCAGATCGAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCGAAGATTTCAACATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGAT
** * * *
16739102 TTCAGCA-TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAG
131 AGCAG-ATTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAG
* * *
16739147 CAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACA-TTCCCGTGC
1 AAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTGACACTT-CCGTGC
*
16739211 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGA
65 TTACAGCGAAGCAGATCGAAGATTTCAACATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGA
16739276 TAGCAGATTTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAG
130 TAGCAGA-TTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAG
16739323 AAGAT
1 AAGAT
16739328 CTGATATTCC
Statistics
Matches: 164, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
174 3 0.02
175 122 0.74
176 39 0.24
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (175 bp):
AAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTGACACTTCCGTGCT
TACAGCGAAGCAGATCGAAGATTTCAACATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGAT
AGCAGATTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAG
Found at i:16739766 original size:206 final size:206
Alignment explanation
Indices: 16739413--16740146 Score: 1202
Period size: 206 Copynumber: 3.6 Consensus size: 206
16739403 GAAGATAGCA
*
16739413 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
16739477 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * *
16739542 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGA-CTTCATATGTTTATACTAAAG
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCT-AACCTTCAGATGTTTATACTGAAG
*
16739606 CAGATCCAAGGT
195 CAGATCCAAGAT
16739618 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
16739683 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGATAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* *
16739748 CGTCTCCATATTCGACGGAGAACAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGT
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
16739813 AGATTCAAGAT
196 AGATCCAAGAT
* *
16739824 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
16739889 TACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTTAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * * *
16739954 CGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
16740019 AGATCCAAGAT
196 AGATCCAAGAT
* * * * * * * *
16740030 GGTTTGGTATCCTTGTGATTACAAGGTACAAATCGAAGACATAGTTAATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
16740095 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAAAACA
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACA
16740147 GATCAAAGAT
Statistics
Matches: 494, Mismatches: 33, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
205 62 0.13
206 432 0.87
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGAT
Found at i:16740567 original size:19 final size:19
Alignment explanation
Indices: 16740543--16740640 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
16740533 AATCTTTAAG
16740543 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16740562 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
16740581 GATA--CAATCTTGGATAT
1 GATATGCAATCTTAGATAT
16740598 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
16740617 GATATACAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
16740638 GAT
1 GAT
16740641 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.22
19 47 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:16740573 original size:36 final size:35
Alignment explanation
Indices: 16740533--16740618 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 35
16740523 ATGGCAATAT
16740533 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC
*
16740569 AATC-TTAGATATGATACAATCTTGGATATGATATGC
1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC
16740605 AATC-TTAGATATGA
1 AATCTTTAGATATGA
16740619 TATACAATCT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
33 6 0.13
34 2 0.04
35 2 0.04
36 36 0.78
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATGATATGC
Found at i:16740619 original size:36 final size:37
Alignment explanation
Indices: 16740549--16740640 Score: 141
Period size: 36 Copynumber: 2.4 Consensus size: 37
16740539 TAAGGATATG
*
16740549 CAATCTTAGATATGATATGCAATCTTAGATATG-ATA
1 CAATCTTGGATATGATATGCAATCTTAGATATGAATA
16740585 CAATCTTGGATATGATATGCAATCTTAGATATGATATA
1 CAATCTTGGATATGATATGCAATCTTAGATATGA-ATA
16740623 CAATCTTGAAGATATGAT
1 CAATCTTG--GATATGAT
16740641 CTTGTAATCT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
36 32 0.63
38 11 0.22
40 8 0.16
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (37 bp):
CAATCTTGGATATGATATGCAATCTTAGATATGAATA
Found at i:16741195 original size:24 final size:24
Alignment explanation
Indices: 16741149--16741196 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
16741139 GCATAGTTTC
16741149 ATTTTTTTATATGCTATGATTTATT
1 ATTTTTTTATATGCTAT-ATTTATT
*
16741174 ATTTCTTTTATGTGCTAT-TTTAT
1 ATTT-TTTTATATGCTATATTTAT
16741197 GATATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 4 0.19
26 12 0.57
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.65
Consensus pattern (24 bp):
ATTTTTTTATATGCTATATTTATT
Found at i:16747243 original size:19 final size:19
Alignment explanation
Indices: 16747206--16747243 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
16747196 TTTTCATCAG
*
16747206 ATTTTAATAAAAAATACAA
1 ATTTTAATAAAAAAAACAA
16747225 ATTTTAA-AAATAAAAACAA
1 ATTTTAATAAA-AAAAACAA
16747244 CTTTATCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
ATTTTAATAAAAAAAACAA
Found at i:16751826 original size:17 final size:17
Alignment explanation
Indices: 16751806--16751859 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
16751796 AAAAAAATTA
16751806 TATACTAAGAAAAAGGG
1 TATACTAAGAAAAAGGG
***
16751823 TATA--AA-AAAAATTA
1 TATACTAAGAAAAAGGG
16751837 TATACTAAGAAAAAGGG
1 TATACTAAGAAAAAGGG
16751854 TATACT
1 TATACT
16751860 TTAAATGCCA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
14 9 0.32
15 2 0.07
16 2 0.07
17 15 0.54
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (17 bp):
TATACTAAGAAAAAGGG
Found at i:16751833 original size:31 final size:31
Alignment explanation
Indices: 16751795--16751857 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
16751785 AATTTGAACG
16751795 AAAAAAAATTATATACTAAGAAAAAGGGTAT
1 AAAAAAAATTATATACTAAGAAAAAGGGTAT
16751826 AAAAAAAATTATATACTAAGAAAAAGGGTAT
1 AAAAAAAATTATATACTAAGAAAAAGGGTAT
16751857 A
1 A
16751858 CTTTAAATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.62, C:0.03, G:0.13, T:0.22
Consensus pattern (31 bp):
AAAAAAAATTATATACTAAGAAAAAGGGTAT
Found at i:16756342 original size:22 final size:22
Alignment explanation
Indices: 16756317--16756358 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
16756307 ACAAATTCGA
16756317 AAATAAAAAAGAAAAAATAAGT
1 AAATAAAAAAGAAAAAATAAGT
* * *
16756339 AAATAGAAAGGAAATAATAA
1 AAATAAAAAAGAAAAAATAA
16756359 TGATGTAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (22 bp):
AAATAAAAAAGAAAAAATAAGT
Found at i:16757144 original size:22 final size:21
Alignment explanation
Indices: 16757113--16757157 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
16757103 ATTTTCAAAA
* *
16757113 AAAAATAATAAAATCTTAAAT
1 AAAAATAATAAAAACATAAAT
16757134 AAAAATGAATAAAAACATAAAT
1 AAAAAT-AATAAAAACATAAAT
16757156 AA
1 AA
16757158 GTAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (21 bp):
AAAAATAATAAAAACATAAAT
Found at i:16762631 original size:15 final size:16
Alignment explanation
Indices: 16762611--16762643 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16762601 TATCTTTACT
16762611 ATTA-TTTTGATTTTA
1 ATTATTTTTGATTTTA
*
16762626 ATTATTTTTTATTTTA
1 ATTATTTTTGATTTTA
16762642 AT
1 AT
16762644 CAAATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
ATTATTTTTGATTTTA
Found at i:16769016 original size:15 final size:17
Alignment explanation
Indices: 16768981--16769017 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
16768971 ACTTTAAATA
16768981 TTATTGTGTCTATCTAT
1 TTATTGTGTCTATCTAT
*
16768998 TTATTGT-TCTTTC-AT
1 TTATTGTGTCTATCTAT
16769013 TTATT
1 TTATT
16769018 TTACTTCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 5 0.26
17 7 0.37
ACGTcount: A:0.16, C:0.11, G:0.08, T:0.65
Consensus pattern (17 bp):
TTATTGTGTCTATCTAT
Found at i:16772321 original size:29 final size:31
Alignment explanation
Indices: 16772259--16772326 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 31
16772249 ATATAATCAC
* *
16772259 AATTCACATC-TTTAAAATTCGAATTTTGGT
1 AATTCATATCTTTTAAAATTCGAATTTTGCT
*
16772289 -ATTCATATCTTTTAAAATT-TAATTTT-CT
1 AATTCATATCTTTTAAAATTCGAATTTTGCT
16772317 AATTC-TATCT
1 AATTCATATCT
16772327 ATTACTTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
28 6 0.18
29 18 0.55
30 9 0.27
ACGTcount: A:0.32, C:0.13, G:0.04, T:0.50
Consensus pattern (31 bp):
AATTCATATCTTTTAAAATTCGAATTTTGCT
Found at i:16777727 original size:12 final size:12
Alignment explanation
Indices: 16777710--16777745 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
16777700 GGGCAGCCCG
16777710 GCCCCGCCCGAA
1 GCCCCGCCCGAA
16777722 GCCCCGCCCGAA
1 GCCCCGCCCGAA
* *
16777734 GGCCCACCCGAA
1 GCCCCGCCCGAA
16777746 AAATGGGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.19, C:0.56, G:0.25, T:0.00
Consensus pattern (12 bp):
GCCCCGCCCGAA
Found at i:16778134 original size:20 final size:20
Alignment explanation
Indices: 16778105--16778144 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
16778095 TCTCATTATT
*
16778105 TATTTATTTTTTTGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
16778125 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
16778145 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:16778162 original size:25 final size:23
Alignment explanation
Indices: 16778125--16778170 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
16778115 TTTGTTTTAA
*
16778125 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
16778148 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
16778171 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:16778675 original size:15 final size:16
Alignment explanation
Indices: 16778655--16778687 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
16778645 ATATATATTT
16778655 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
16778670 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
16778687 T
1 T
16778688 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:16778773 original size:22 final size:22
Alignment explanation
Indices: 16778734--16778792 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
16778724 GTTTTAAGAA
*
16778734 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
16778755 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
16778777 AT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
16778793 AATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:16778790 original size:24 final size:25
Alignment explanation
Indices: 16778763--16778822 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
16778753 ATTTGTTTTA
16778763 ATATTTATTT-TTATATTTTTAAAT
1 ATATTTATTTATTATATTTTTAAAT
16778787 ATATTTAATTTATTATATTTTTAAAT
1 ATATTT-ATTTATTATATTTTTAAAT
*
16778813 -TTTTTATTTA
1 ATATTTATTTA
16778823 ATGAAATAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 11 0.33
25 8 0.24
26 14 0.42
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
ATATTTATTTATTATATTTTTAAAT
Found at i:16779511 original size:17 final size:17
Alignment explanation
Indices: 16779490--16779523 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16779480 AAAACTACAA
*
16779490 AAAAAAAAAAAGTAAAAC
1 AAAAACAAAAA-TAAAAC
16779508 AAAAACAAAAATAAAA
1 AAAAACAAAAATAAAA
16779524 TAAATGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.85, C:0.06, G:0.03, T:0.06
Consensus pattern (17 bp):
AAAAACAAAAATAAAAC
Found at i:16780724 original size:23 final size:23
Alignment explanation
Indices: 16780698--16780763 Score: 107
Period size: 23 Copynumber: 2.9 Consensus size: 23
16780688 ATACACAGAT
*
16780698 TCCAACCAAACACACC-GAAATAA
1 TCCACCCAAACACACCAG-AATAA
16780721 TCCACCCAAACACACCAGAATAA
1 TCCACCCAAACACACCAGAATAA
16780744 TCCACCCAAACACACCAGAA
1 TCCACCCAAACACACCAGAA
16780764 CAGCAATCAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
23 40 0.98
24 1 0.02
ACGTcount: A:0.48, C:0.39, G:0.05, T:0.08
Consensus pattern (23 bp):
TCCACCCAAACACACCAGAATAA
Found at i:16781795 original size:16 final size:18
Alignment explanation
Indices: 16781769--16781801 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16781759 TGACTCTCTC
16781769 TTTCTTTTTA-TGCTTTG
1 TTTCTTTTTATTGCTTTG
16781786 TTTC-TTTTATTGCTTT
1 TTTCTTTTTATTGCTTT
16781802 TATGTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.06, C:0.12, G:0.09, T:0.73
Consensus pattern (18 bp):
TTTCTTTTTATTGCTTTG
Found at i:16781819 original size:25 final size:25
Alignment explanation
Indices: 16781774--16781829 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
16781764 CTCTCTTTCT
*
16781774 TTTTATGCTTTGTTTCTTTTATT-G
1 TTTTATGCTTTATTTCTTTTATTAG
*
16781798 CTTTTATGTTTTATTTAC-TTTATTAG
1 -TTTTATGCTTTATTT-CTTTTATTAG
16781824 TTTTAT
1 TTTTAT
16781830 AATAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 25 0.93
26 2 0.07
ACGTcount: A:0.14, C:0.07, G:0.09, T:0.70
Consensus pattern (25 bp):
TTTTATGCTTTATTTCTTTTATTAG
Found at i:16791899 original size:6 final size:6
Alignment explanation
Indices: 16791879--16791967 Score: 143
Period size: 6 Copynumber: 15.7 Consensus size: 6
16791869 TAAGTAAATA
16791879 TATATG TATAT- TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
16791926 TATATG TATATG TATATG TATAT- TATAT- TATAT- TATAT- TATA
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATA
16791968 ATAACTAAAT
Statistics
Matches: 82, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
5 24 0.29
6 58 0.71
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (6 bp):
TATATG
Found at i:16792334 original size:30 final size:28
Alignment explanation
Indices: 16792280--16792349 Score: 72
Period size: 30 Copynumber: 2.5 Consensus size: 28
16792270 AATTGTAAAA
*
16792280 TAAATTGTAAATTTTGAGTATTAGGGAC
1 TAAATTGTAAATTTTGAATATTAGGGAC
*
16792308 TAAATTGTGAAAATTTTGAA-ATTTAGGGAT
1 TAAATTGT--AAATTTTGAATA-TTAGGGAC
*
16792338 TTAATTG-AAATT
1 TAAATTGTAAATT
16792350 AGAGAGTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
27 5 0.14
28 8 0.22
29 1 0.03
30 22 0.61
ACGTcount: A:0.39, C:0.01, G:0.19, T:0.41
Consensus pattern (28 bp):
TAAATTGTAAATTTTGAATATTAGGGAC
Found at i:16794945 original size:42 final size:42
Alignment explanation
Indices: 16794883--16794967 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
16794873 AATTGAGTAC
* * *
16794883 GTTCAATTAATTGATTAGTGACGAATTGATGGATAAGACCAT
1 GTTCAATTAATTGATCAGTGACGAATTGACGGATAAAACCAT
*
16794925 GTTCAATTAATTGATCAGTGATGAATTGACGGATAAAACCAT
1 GTTCAATTAATTGATCAGTGACGAATTGACGGATAAAACCAT
16794967 G
1 G
16794968 GTTAAATCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (42 bp):
GTTCAATTAATTGATCAGTGACGAATTGACGGATAAAACCAT
Found at i:16798260 original size:242 final size:241
Alignment explanation
Indices: 16797822--16798262 Score: 543
Period size: 242 Copynumber: 1.8 Consensus size: 241
16797812 TAATTTCATC
* *
16797822 CCTTATTCTTATGTTTTATGACATGCTGAACATTTTTCTCTTCCATGACAACATCAAATTCTCAC
1 CCTTATTCTTATGTTTTATGACATGCTGAACATTTTTCCCTTACATGACAACATCAAATTCTCAC
** * * **
16797887 TCTAACATGTACTTATGAACATTATGTATTATTACCGATAATGCTGTTTTGCTCGTTTTTGCTAA
66 TCTAACATGTACTTATGAACATTATGTATTATTACCGATAATGCCATTTTACTCATTTTCACTAA
* ** * * * * *
16797952 AAATCGCTTAGAAAAGATCATTCTCCTAACTTAAAACATTCATATTCTACCATCAAACATCAAAA
131 AAACCGAGTAGAAAAGAT-ATTCTCATAACTTAAAACACTCATATTATACCATAAAACACCAAAA
16798017 TACATGCATATCATTCATGGGTAAATTTTTAAACATAAACCCTAACT
195 TACATGCATATCATTCATGGGTAAATTTTTAAACATAAACCCTAACT
* * *
16798064 CCTTATTCTTATGTTTTATGACATGCTGACCATTTTTCCCTTATATGGCAACATCAAATTCTCAC
1 CCTTATTCTTATGTTTTATGACATGCTGAACATTTTTCCCTTACATGACAACATCAAATTCTCAC
*
16798129 TCTAACATGTACTTATG-ACTATTA-GATATTTTTACCGATTAA-GCCATTTTACTCATTTTCAC
66 TCTAACATGTACTTATGAAC-ATTATG-TATTATTACCGA-TAATGCCATTTTACTCATTTTCAC
* * * **
16798191 TCAAAACCGAGTAGTACAAG-T-TGTCTAACATAATTTAAAAC-CTCATATTATGTCATAAAACA
128 TAAAAACCGAGTAG-AAAAGATAT-TCT--CATAACTTAAAACACTCATATTATACCATAAAACA
16798253 CCAAAATACA
189 CCAAAATACA
16798263 CAAATTTCAC
Statistics
Matches: 167, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
240 1 0.01
241 6 0.04
242 142 0.85
243 18 0.11
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.37
Consensus pattern (241 bp):
CCTTATTCTTATGTTTTATGACATGCTGAACATTTTTCCCTTACATGACAACATCAAATTCTCAC
TCTAACATGTACTTATGAACATTATGTATTATTACCGATAATGCCATTTTACTCATTTTCACTAA
AAACCGAGTAGAAAAGATATTCTCATAACTTAAAACACTCATATTATACCATAAAACACCAAAAT
ACATGCATATCATTCATGGGTAAATTTTTAAACATAAACCCTAACT
Found at i:16805259 original size:40 final size:39
Alignment explanation
Indices: 16805135--16805269 Score: 105
Period size: 40 Copynumber: 3.4 Consensus size: 39
16805125 GACCTCGAGT
* *
16805135 CGATGAGACACTAGGTGTCAATTTATTACTTC-AGATATATT
1 CGATGAGACACTGGGTGTCAA-TTATTACTTCGA-AT-TATC
* * * * * ** *
16805176 CGATGAGGCATTTGGTGCCAA-T-TTACTTTGGTTTAGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGAATTATC
*
16805213 CAATGAGACACTGGGTGTCAACTTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAA-TTATTACTTCGAATTATC
*
16805253 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
16805270 CCAAACTGGT
Statistics
Matches: 70, Mismatches: 20, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
37 18 0.26
38 7 0.10
39 2 0.03
40 26 0.37
41 17 0.24
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGAATTATC
Found at i:16805998 original size:38 final size:39
Alignment explanation
Indices: 16805956--16806049 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 39
16805946 CCATTTCCGT
* * *
16805956 CCAACCCAACACACCA-TGTGGGGATAGAATCAACCCAC
1 CCAACCCTACACACCAGTATGAGGATAGAATCAACCCAC
** *
16805994 CCAACCCTACACACCAAGTATGAGGATCTAATCAACCCAT
1 CCAACCCTACACACC-AGTATGAGGATAGAATCAACCCAC
16806034 CCAACCCTACACACCA
1 CCAACCCTACACACCA
16806050 ACTAGTACCG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 14 0.29
39 2 0.04
40 32 0.67
ACGTcount: A:0.37, C:0.39, G:0.11, T:0.13
Consensus pattern (39 bp):
CCAACCCTACACACCAGTATGAGGATAGAATCAACCCAC
Done.