Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 6 of 349
Found at i:1859381 original size:18 final size:18
Alignment explanation
Indices: 1859358--1859396 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
1859348 ACTTGCAACC
1859358 AAATGTTTTTAATTAAAT
1 AAATGTTTTTAATTAAAT
1859376 AAATGTTTTTAATTAAAT
1 AAATGTTTTTAATTAAAT
1859394 AAA
1 AAA
1859397 AAAAGGTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (18 bp):
AAATGTTTTTAATTAAAT
Found at i:1861520 original size:84 final size:84
Alignment explanation
Indices: 1861356--1861556 Score: 212
Period size: 84 Copynumber: 2.4 Consensus size: 84
1861346 TGAAGAAGAA
* * **
1861356 GAAGAAGAAAAAGGGTGGTTCGAAGTGAAAGAAGTGATAACATCGGAAGCCGAGTCCGGAGAGGA
1 GAAGAAGAAAAAGGGTCGTTCGAAGTGAAAGAAGTCATAACATCGGAAGCCGACCCCGGAGAGGA
*
1861421 AGAACAAACACGTGAAGTT
66 AGAACAAACACGTGAAATT
* *
1861440 GAAGAAGAAGAAGGGTCGTTCGAAGTGAAAGACA-TCATAACATC-GAAGGTCGACCCCTTGGA-
1 GAAGAAGAAAAAGGGTCGTTCGAAGTGAAAGA-AGTCATAACATCGGAA-GCCGACCCC--GGAG
* * *
1861502 A-GAGGAACGAACATGTGAAATT
62 AGGAAGAACAAACACGTGAAATT
* * * *
1861524 AAAGAAGAAAAAGGGTTGATCGAAGTGCAAGAA
1 GAAGAAGAAAAAGGGTCGTTCGAAGTGAAAGAA
1861557 ACGAAAACAT
Statistics
Matches: 98, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
83 4 0.04
84 89 0.91
85 2 0.02
86 3 0.03
ACGTcount: A:0.42, C:0.12, G:0.31, T:0.14
Consensus pattern (84 bp):
GAAGAAGAAAAAGGGTCGTTCGAAGTGAAAGAAGTCATAACATCGGAAGCCGACCCCGGAGAGGA
AGAACAAACACGTGAAATT
Found at i:1861566 original size:84 final size:84
Alignment explanation
Indices: 1861422--1861576 Score: 195
Period size: 84 Copynumber: 1.8 Consensus size: 84
1861412 CGGAGAGGAA
* * * * * *
1861422 GAACAAACACGTGAAGTTGAAGAAGAAGAAGGGTCGTTCGAAGTGAAAGACATCATAACATCGAA
1 GAACAAACACGTGAAATTAAAGAAGAAAAAGGGTCGATCGAAGTGAAAGACAACAAAACATCGAA
1861487 GGTCGACCCCTTGGAAGAG
66 GGTCGACCCCTTGGAAGAG
* * * * *
1861506 GAACGAACATGTGAAATTAAAGAAGAAAAAGGGTTGATCGAAGTGCAAGA-AACGAAAACATGGA
1 GAACAAACACGTGAAATTAAAGAAGAAAAAGGGTCGATCGAAGTGAAAGACAAC-AAAACATCGA
1861570 AGGTCGA
65 AGGTCGA
1861577 ACATGGAAGG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
83 2 0.03
84 57 0.97
ACGTcount: A:0.43, C:0.14, G:0.28, T:0.15
Consensus pattern (84 bp):
GAACAAACACGTGAAATTAAAGAAGAAAAAGGGTCGATCGAAGTGAAAGACAACAAAACATCGAA
GGTCGACCCCTTGGAAGAG
Found at i:1861579 original size:14 final size:14
Alignment explanation
Indices: 1861562--1861590 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1861552 AAGAAACGAA
1861562 AACATGGAAGGTCG
1 AACATGGAAGGTCG
1861576 AACATGGAAGGTCG
1 AACATGGAAGGTCG
1861590 A
1 A
1861591 TTGTTAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.34, T:0.14
Consensus pattern (14 bp):
AACATGGAAGGTCG
Found at i:1862522 original size:34 final size:34
Alignment explanation
Indices: 1862479--1862550 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
1862469 ATAAAATTTT
*
1862479 AAATTCATATTTCGATTGAACATAAGTAATTATA
1 AAATTCATATTTCGATTGAACATAAGTAAATATA
** *
1862513 AAATTCATATTTCGATTGGGCTTAAGTAAATATA
1 AAATTCATATTTCGATTGAACATAAGTAAATATA
1862547 AAAT
1 AAAT
1862551 GTATTAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (34 bp):
AAATTCATATTTCGATTGAACATAAGTAAATATA
Found at i:1863339 original size:66 final size:66
Alignment explanation
Indices: 1863233--1863365 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
1863223 GGATTAAATG
1863233 GTTCCTAGGTAACTCATGCCAGAGGGATAAACTGGAGATATGCAGGTAATCCAACAAAAGAGACT
1 GTTCCTAGGTAACTCATGCCAGAGGGATAAACTGGAGATATGCAGGTAATCCAACAAAAGAGACT
1863298 T
66 T
* * *
1863299 GTTCCTAGGTAAGTCATGGCAGAGGGATAAACTGGAGATATGCAGGTAATCCAACAAAAGCGACT
1 GTTCCTAGGTAACTCATGCCAGAGGGATAAACTGGAGATATGCAGGTAATCCAACAAAAGAGACT
1863364 T
66 T
1863365 G
1 G
1863366 AACTATAAAC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.21
Consensus pattern (66 bp):
GTTCCTAGGTAACTCATGCCAGAGGGATAAACTGGAGATATGCAGGTAATCCAACAAAAGAGACT
T
Found at i:1867499 original size:17 final size:18
Alignment explanation
Indices: 1867468--1867501 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1867458 CATATTAAGG
1867468 TTTTGATATATTTAATTA
1 TTTTGATATATTTAATTA
*
1867486 TTTTTATATA-TTAATT
1 TTTTGATATATTTAATT
1867502 TTTATATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTTGATATATTTAATTA
Found at i:1869218 original size:11 final size:9
Alignment explanation
Indices: 1869197--1869227 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
1869187 AAGTAATCAC
1869197 ATATAATAT
1 ATATAATAT
1869206 ATATAATAT
1 ATATAATAT
1869215 ATATAATAT
1 ATATAATAT
1869224 ATAT
1 ATAT
1869228 TGAAGTGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
ATATAATAT
Found at i:1877652 original size:19 final size:20
Alignment explanation
Indices: 1877628--1877671 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1877618 GTTGTTAGAA
*
1877628 TTTTACCTCCTT-TTATATT
1 TTTTACCTCATTATTATATT
* *
1877647 TTTTACTTGATTATTATATT
1 TTTTACCTCATTATTATATT
1877667 TTTTA
1 TTTTA
1877672 TTTATTAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTACCTCATTATTATATT
Found at i:1880489 original size:17 final size:17
Alignment explanation
Indices: 1880456--1880489 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1880446 CTGATTTTAT
*
1880456 AATTTTTAAATATCTAA
1 AATTTTTAAATAACTAA
*
1880473 AATTTTTAATTAACTAA
1 AATTTTTAAATAACTAA
1880490 TTAATTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (17 bp):
AATTTTTAAATAACTAA
Found at i:1887325 original size:18 final size:18
Alignment explanation
Indices: 1887302--1887336 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1887292 TCGTCAATCG
*
1887302 AATTGACTTATGACATCC
1 AATTGACTTATAACATCC
1887320 AATTGACTTATAACATC
1 AATTGACTTATAACATC
1887337 AACTTAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (18 bp):
AATTGACTTATAACATCC
Found at i:1888696 original size:18 final size:18
Alignment explanation
Indices: 1888648--1888701 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
1888638 TTATAATATA
1888648 TATTTTTATT-TTTATAAT
1 TATTTTTATTATTTA-AAT
** *
1888666 TAAATTTA-AATTTAAAT
1 TATTTTTATTATTTAAAT
1888683 TATTTTTATTATTTAAAT
1 TATTTTTATTATTTAAAT
1888701 T
1 T
1888702 GAATTTGAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
17 9 0.32
18 19 0.68
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTTTATTATTTAAAT
Found at i:1894595 original size:20 final size:18
Alignment explanation
Indices: 1894570--1894628 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 18
1894560 CGTGTGAATG
1894570 TTGACCAGTCAAAAACTGGA
1 TTGACCAGT-AAAAAC-GGA
*
1894590 TTGACCGGTATGAAAACGGA
1 TTGACCAGTA--AAAACGGA
1894610 TTGAACCAGTTAAAAACGG
1 TTG-ACCAG-TAAAAACGG
1894629 TTTTTTATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 1 0.03
20 21 0.64
21 9 0.27
22 2 0.06
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (18 bp):
TTGACCAGTAAAAACGGA
Found at i:1903984 original size:19 final size:19
Alignment explanation
Indices: 1903938--1903985 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
1903928 GTATATATTT
*
1903938 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTACGTAGA
*
1903956 TAAATCTTATTTACGTAGA
1 TAAATTTTATTTACGTAGA
*
1903975 TAAGTTTTATT
1 TAAATTTTATT
1903986 CATATTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTACGTAGA
Found at i:1904008 original size:12 final size:11
Alignment explanation
Indices: 1903979--1904004 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1903969 CGTAGATAAG
1903979 TTTTATTCATA
1 TTTTATTCATA
1903990 TTTTATTCATA
1 TTTTATTCATA
1904001 TTTT
1 TTTT
1904005 TATTTTATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTATTCATA
Found at i:1905810 original size:30 final size:30
Alignment explanation
Indices: 1905774--1905834 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
1905764 ATTCCCGAGC
1905774 TTAGGGGCAAAA-GTGTAATTATGCAAAAGT
1 TTAGGGGCAAAATG-GTAATTATGCAAAAGT
* * *
1905804 TTAGGGGTAAAATGGTAATTTTGCCAAAGT
1 TTAGGGGCAAAATGGTAATTATGCAAAAGT
1905834 T
1 T
1905835 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (30 bp):
TTAGGGGCAAAATGGTAATTATGCAAAAGT
Found at i:1906307 original size:47 final size:46
Alignment explanation
Indices: 1906256--1906432 Score: 225
Period size: 47 Copynumber: 3.8 Consensus size: 46
1906246 TGGTTGAACA
*
1906256 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AAACG
* * *
1906303 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
*
1906350 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
1906396 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1906433 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 2 0.02
44 5 0.04
45 1 0.01
46 37 0.33
47 57 0.51
48 3 0.03
50 7 0.06
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:1911895 original size:47 final size:47
Alignment explanation
Indices: 1911743--1911919 Score: 213
Period size: 47 Copynumber: 3.8 Consensus size: 47
1911733 TGTAACCCGC
* *
1911743 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACAGTTCACAT
*
1911789 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-AGTTCACAT
* * *
1911839 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
1911883 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1911920 TGTTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
43 3 0.03
44 5 0.04
45 3 0.03
46 34 0.30
47 57 0.51
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
Found at i:1911915 original size:94 final size:93
Alignment explanation
Indices: 1911751--1911921 Score: 281
Period size: 94 Copynumber: 1.8 Consensus size: 93
1911741 GCCCATAAGT
* *
1911751 GAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
1911816 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
1911844 GAACTCGGACTCAACTCAACGAG-TTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTT-GGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTC
1911908 AACGAGTTCGGATG
64 AACGAGTTCGGATG
1911922 TTCAACCATC
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
92 2 0.03
93 26 0.36
94 44 0.61
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:1912375 original size:30 final size:30
Alignment explanation
Indices: 1912341--1912400 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
1912331 CCTTAATACG
1912341 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
1912371 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
1912401 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:1913465 original size:42 final size:42
Alignment explanation
Indices: 1913406--1913494 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
1913396 TTAGGAATAT
* *
1913406 TTTTATTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1913448 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1913490 TTTTC
1 TTTTC
1913495 CCAATTAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.04, G:0.15, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:1919981 original size:56 final size:56
Alignment explanation
Indices: 1919889--1919995 Score: 126
Period size: 56 Copynumber: 1.9 Consensus size: 56
1919879 TTTATTAAGT
* * * *
1919889 TTTCATTTGGGTTATCCATCACTAATTCAATATTATTGTACAATTATTTTAATAAA
1 TTTCATTTGAGTTATCCATCACTAATTCAAGATTATTATACAATCATTTTAATAAA
* * * *
1919945 TTTCATTTTAGTTA-CCAGTCATTAATTCAAGGTTATTATACACTCATTTTA
1 TTTCATTTGAGTTATCCA-TCACTAATTCAAGATTATTATACAATCATTTTA
1919996 GTGATAACTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
55 3 0.07
56 39 0.93
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.47
Consensus pattern (56 bp):
TTTCATTTGAGTTATCCATCACTAATTCAAGATTATTATACAATCATTTTAATAAA
Found at i:1932224 original size:5 final size:5
Alignment explanation
Indices: 1932208--1932258 Score: 54
Period size: 5 Copynumber: 10.6 Consensus size: 5
1932198 CTCATTATAC
* *
1932208 TTTCT TTCCT TTTC- TTTCT TTTCT TTAC- TTTCT TTTCT TTTCCT TTT-T
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT-CT TTTCT
1932256 TTT
1 TTT
1932259 TATCTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
4 11 0.28
5 23 0.59
6 5 0.13
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTCT
Found at i:1932228 original size:9 final size:9
Alignment explanation
Indices: 1932208--1932266 Score: 52
Period size: 9 Copynumber: 6.3 Consensus size: 9
1932198 CTCATTATAC
1932208 TTTCTTTCCT
1 TTTCTTT-CT
1932218 TTTCTTTCT
1 TTTCTTTCT
1932227 TTTCTTTAC-
1 TTTCTTT-CT
1932236 TTTCTTTTCT
1 TTTC-TTTCT
1932246 TTTCCTTT-T
1 TTT-CTTTCT
1932255 TTT-TTATCT
1 TTTCTT-TCT
1932264 TTT
1 TTT
1932267 TTACCCCTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
7 2 0.05
8 1 0.02
9 22 0.51
10 17 0.40
11 1 0.02
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:1932232 original size:19 final size:19
Alignment explanation
Indices: 1932208--1932249 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
1932198 CTCATTATAC
*
1932208 TTTCTTTCCTTT-TCTTTCT
1 TTTCTTTACTTTCT-TTTCT
1932227 TTTCTTTACTTTCTTTTCT
1 TTTCTTTACTTTCTTTTCT
1932246 TTTC
1 TTTC
1932250 CTTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTCTTTACTTTCTTTTCT
Found at i:1932257 original size:14 final size:14
Alignment explanation
Indices: 1932207--1932249 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
1932197 TCTCATTATA
*
1932207 CTTTCTTTCCTTTT
1 CTTTCTTTTCTTTT
*
1932221 CTTTCTTTTCTTTA
1 CTTTCTTTTCTTTT
1932235 CTTTCTTTTCTTTT
1 CTTTCTTTTCTTTT
1932249 C
1 C
1932250 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (14 bp):
CTTTCTTTTCTTTT
Found at i:1933256 original size:20 final size:19
Alignment explanation
Indices: 1933231--1933273 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
1933221 CTCATTATAG
*
1933231 TTTTTTATCATGTATGCTGT
1 TTTTTTATCATATATGCT-T
1933251 TTTTTTATCATATATGCTT
1 TTTTTTATCATATATGCTT
1933270 TTTT
1 TTTT
1933274 AACTTAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.16, C:0.09, G:0.09, T:0.65
Consensus pattern (19 bp):
TTTTTTATCATATATGCTT
Found at i:1934394 original size:20 final size:21
Alignment explanation
Indices: 1934371--1934411 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1934361 CTAAATTTCA
1934371 TAAATT-AAAAATAAAAAGAT
1 TAAATTCAAAAATAAAAAGAT
*
1934391 TAAATTCCAAAAATAAGAAGA
1 TAAATT-CAAAAATAAAAAGA
1934412 ATAACGAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
22 12 0.67
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.22
Consensus pattern (21 bp):
TAAATTCAAAAATAAAAAGAT
Found at i:1934824 original size:23 final size:23
Alignment explanation
Indices: 1934797--1934840 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1934787 AGTCTTTGTA
1934797 CTTTTACTTTTAAGAATTTAATT
1 CTTTTACTTTTAAGAATTTAATT
* * *
1934820 CTTTTGCTTTTCAGATTTTAA
1 CTTTTACTTTTAAGAATTTAA
1934841 AATGTAGGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.11, G:0.07, T:0.57
Consensus pattern (23 bp):
CTTTTACTTTTAAGAATTTAATT
Found at i:1951647 original size:55 final size:56
Alignment explanation
Indices: 1951538--1951650 Score: 194
Period size: 56 Copynumber: 2.0 Consensus size: 56
1951528 AATCTTATCT
1951538 AATCTATTTCTGTTCTTATTGTGTTTTCAGCCTTTTTCTATCTTAAGGAATAGCCC
1 AATCTATTTCTGTTCTTATTGTGTTTTCAGCCTTTTTCTATCTTAAGGAATAGCCC
*
1951594 AATCTTTTTCTGTTCTTATTGTG-TTTCAGCC-TTTTCTATCTTAAGGAATTAGCCC
1 AATCTATTTCTGTTCTTATTGTGTTTTCAGCCTTTTTCTATCTTAAGGAA-TAGCCC
1951649 AA
1 AA
1951651 AAATCCCCAA
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
54 17 0.31
55 16 0.29
56 22 0.40
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (56 bp):
AATCTATTTCTGTTCTTATTGTGTTTTCAGCCTTTTTCTATCTTAAGGAATAGCCC
Found at i:1957893 original size:32 final size:32
Alignment explanation
Indices: 1957850--1957913 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
1957840 ATCCACAACT
1957850 AATAACATATCTTGAATCCATTAGATTACTTG
1 AATAACATATCTTGAATCCATTAGATTACTTG
* *
1957882 AATAACCTATCTTGAATCCATTAGATTGCTTG
1 AATAACATATCTTGAATCCATTAGATTACTTG
1957914 CTAATGATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (32 bp):
AATAACATATCTTGAATCCATTAGATTACTTG
Found at i:1961308 original size:30 final size:30
Alignment explanation
Indices: 1961272--1961332 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
1961262 ATTTTATTGT
*
1961272 TAATTTTTTTATTATTTTAAAGACATTTGC
1 TAATTTTGTTATTATTTTAAAGACATTTGC
* *
1961302 TAATTTTGTTATTATTTTAGAGGCATTTGC
1 TAATTTTGTTATTATTTTAAAGACATTTGC
1961332 T
1 T
1961333 TATTAAGTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.07, G:0.11, T:0.56
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGACATTTGC
Found at i:1961479 original size:12 final size:12
Alignment explanation
Indices: 1961458--1961491 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1961448 TATATATTTT
*
1961458 AAAATCATATAA
1 AAAATAATATAA
1961470 AAAATAATATAA
1 AAAATAATATAA
*
1961482 AAATTAATAT
1 AAAATAATAT
1961492 GGGCGGACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:1962501 original size:11 final size:11
Alignment explanation
Indices: 1962487--1962527 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
1962477 TGTTTTCTCC
1962487 CTATTTTGCTA
1 CTATTTTGCTA
*
1962498 CTATTTTACTA
1 CTATTTTGCTA
* *
1962509 TTATGTTGCTA
1 CTATTTTGCTA
1962520 CTATTTTG
1 CTATTTTG
1962528 TTGTTAATGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:1965519 original size:31 final size:31
Alignment explanation
Indices: 1965484--1965546 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
1965474 AATTACAAAA
* **
1965484 TGATCACCTAATTATTTGACTTTTTCTTTTT
1 TGATCACCTAACTATTTGAAATTTTCTTTTT
*
1965515 TGATCACTTAACTATTTGAAATTTTCTTTTT
1 TGATCACCTAACTATTTGAAATTTTCTTTTT
1965546 T
1 T
1965547 AGATTGTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.57
Consensus pattern (31 bp):
TGATCACCTAACTATTTGAAATTTTCTTTTT
Found at i:1974572 original size:45 final size:45
Alignment explanation
Indices: 1974517--1974605 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
1974507 TTGTCCTAAA
*
1974517 TTTTATTCATATTATTTATTTAACATGTTAGATTTAAGTTGTTCG
1 TTTTATTCATATTATTTATTTAACATGTTAAATTTAAGTTGTTCG
*
1974562 TTTTATTCATATTATTTATTTAATATGTTAAATTTAAGTTGTTC
1 TTTTATTCATATTATTTATTTAACATGTTAAATTTAAGTTGTTC
1974606 ATACAATTGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.57
Consensus pattern (45 bp):
TTTTATTCATATTATTTATTTAACATGTTAAATTTAAGTTGTTCG
Found at i:1976756 original size:29 final size:27
Alignment explanation
Indices: 1976679--1976759 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 27
1976669 TAGACTTGCC
*
1976679 TATATTATTTTTAATTTTTTAAATATTTA
1 TATATT-TTTTT-ATTTATTAAATATTTA
*
1976708 TATTATATTATTTTA-ATATTAAATAATATTA
1 TA-TAT-TT-TTTTATTTATTAAAT-AT-TTA
1976739 TATATTTTTTTATTTATTAAA
1 TATATTTTTTTATTTATTAAA
1976760 AGTTTTTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
28 5 0.12
29 18 0.42
30 10 0.23
31 10 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
TATATTTTTTTATTTATTAAATATTTA
Found at i:1981950 original size:19 final size:19
Alignment explanation
Indices: 1981928--1981964 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1981918 CAACTTTTTC
1981928 ATATATTATAATATTTTAA
1 ATATATTATAATATTTTAA
*
1981947 ATATATTATTATATTTTA
1 ATATATTATAATATTTTA
1981965 GCATACCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATATTATAATATTTTAA
Found at i:1991709 original size:199 final size:202
Alignment explanation
Indices: 1991317--1991827 Score: 617
Period size: 199 Copynumber: 2.5 Consensus size: 202
1991307 AATGTTCTAT
* * * * *
1991317 GATAGTCTTTACCTATGTGAGTCAAATTCTTCAT-TTTTTCCCCAAAA-TATTGATGCTAGGCAC
1 GATAGTCTTTACCTATGTTACTCGAACTCTTCATATTTTT----AAAAGTATCGATGCTAGGCAC
* * * * *
1991380 TAGTTTCGAACATTTACGAT-CTGGCAAATATATG-AAAAAAAAAACCCAAAAAAAAGTTAAAAA
62 TAGTTTAGAACATGTATGATCCT-CCAATTATATGAAAAAAAAAAACCC-AAAAAAAGTTAAAAA
* * * *
1991443 TTGAGCACACCGGTGTCAAATACATGCACCTAACATATCCAACACCAACATTCGATTCCAATAGC
125 TTGAGCACACCAGTGTC-AAGACATGCACCTAACATATCCAACACCAACATTCAAGTCCAATAGC
1991508 AGACAGCATACTAC
189 AGACAGCATACTAC
* * *
1991522 GATAGTCTTTACCTATGTTACTTGAACTGTTCAT-TTTTCT-GAAGTATCGATGCTAGGCACTAG
1 GATAGTCTTTACCTATGTTACTCGAACTCTTCATATTTT-TAAAAGTATCGATGCTAGGCACTAG
*
1991585 TTTAGAACATGTATGATCCTCCAATTATATGAAAAAAAAAAACTC-AAAAAAGTTAAAAATTGAG
65 TTTAGAACATGTATGATCCTCCAATTATATGAAAAAAAAAAACCCAAAAAAAGTTAAAAATTGAG
* * *
1991649 CACACTAGTGTC-AGACATGCACCTAACATATCCAACACCCACATTCAAGTCCAATAGCAGACGG
130 CACACCAGTGTCAAGACATGCACCTAACATATCCAACACCAACATTCAAGTCCAATAGCAGACAG
*
1991713 CATACTAT
195 CATACTAC
* * **
1991721 GGTAGTCTTTACCTATGTTACTCGAACTCTTCATATTTTTACAAAGTATCGACGCTAAACACTAG
1 GATAGTCTTTACCTATGTTACTCGAACTCTTCATATTTTTA-AAAGTATCGATGCTAGGCACTAG
* *
1991786 TTCAGAA-ATGTATGATCCTCCAATTTTATGAAAAAATAAAAA
65 TTTAGAACATGTATGATCCTCCAATTATATGAAAAAA-AAAAA
1991828 AAACCAAAAT
Statistics
Matches: 267, Mismatches: 31, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
199 86 0.32
200 32 0.12
201 61 0.23
202 41 0.15
203 14 0.05
205 32 0.12
206 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.29
Consensus pattern (202 bp):
GATAGTCTTTACCTATGTTACTCGAACTCTTCATATTTTTAAAAGTATCGATGCTAGGCACTAGT
TTAGAACATGTATGATCCTCCAATTATATGAAAAAAAAAAACCCAAAAAAAGTTAAAAATTGAGC
ACACCAGTGTCAAGACATGCACCTAACATATCCAACACCAACATTCAAGTCCAATAGCAGACAGC
ATACTAC
Found at i:1994280 original size:25 final size:25
Alignment explanation
Indices: 1994246--1994296 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
1994236 TTCCTTATAA
**
1994246 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
1994271 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
1994296 A
1 A
1994297 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:1994295 original size:12 final size:12
Alignment explanation
Indices: 1994249--1994296 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
1994239 CTTATAAACT
1994249 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
1994261 TTCTATTAGGACT
1 TTAAATTAGGA-A
1994274 TTAAATTAGGAA
1 TTAAATTAGGAA
*
1994286 TTAGATTAGGA
1 TTAAATTAGGA
1994297 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:1998847 original size:25 final size:25
Alignment explanation
Indices: 1998813--1998863 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
1998803 TTCCTTATAA
**
1998813 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
*
1998838 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
1998863 A
1 A
1998864 TTTTCCTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTAGATTAGG
Found at i:2003421 original size:17 final size:17
Alignment explanation
Indices: 2003399--2003445 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 17
2003389 ATTTTGTCAT
2003399 ATTATTTTTATAAATAA
1 ATTATTTTTATAAATAA
*
2003416 ATTA-TTAT-TAAA-AA
1 ATTATTTTTATAAATAA
2003430 ATTATTTTTATAAATA
1 ATTATTTTTATAAATA
2003446 TATGTATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 6 0.24
15 7 0.28
16 7 0.28
17 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTATTTTTATAAATAA
Found at i:2003454 original size:21 final size:21
Alignment explanation
Indices: 2003430--2003473 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
2003420 TTATTAAAAA
2003430 ATTATTTTTATAA-ATATATGT
1 ATTATTTTTATAATATATA-GT
2003451 ATTATTTTTATAATATATAGT
1 ATTATTTTTATAATATATAGT
2003472 AT
1 AT
2003474 GGACACTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTATTTTTATAATATATAGT
Found at i:2005684 original size:197 final size:197
Alignment explanation
Indices: 2005349--2005739 Score: 613
Period size: 197 Copynumber: 2.0 Consensus size: 197
2005339 GATTATGATA
* * * *
2005349 GTGGTATGCTATTGGATCACTATCTTCTTTGGTTGAATGCTCTTTATTCTTTTGAGTATATATCT
1 GTGGTATGCTATTAGATCACTATCATCTTTGGTTGAATGCTCTTTATGCTTTTGAGCATATATCT
* * *
2005414 GTATGTCTGTGTATTCTCAATGGTTATAATGTCTATCGAGGCTTTAGGTTGAATCCTTTATATAT
66 CTATGTCAGTGTATTCTCAATGGTTATAAAGTCTATCGAGGCTTTAGGTTGAATCCTTTATATAT
* * * *
2005479 TAAATCCAACATTGTCTCCAAAAACAATGAGTGATTAAATTGAATGG-CATGGTAAGAAGGTTGG
131 TAAATCCAACATTATCTCCAAAAACAATGAGTGATTAAATGGAATGGTC-TGATAAGAAGATTGG
2005543 GTT
195 GTT
* * * *
2005546 GTGGTATGCTTTTAGATCACTTTCATCTTTGGTTGAATGCTCTTTATGCTTTTGAGCATATGTTT
1 GTGGTATGCTATTAGATCACTATCATCTTTGGTTGAATGCTCTTTATGCTTTTGAGCATATATCT
* *
2005611 CTATGTCAGTGTATTCTCAATTGTTATAAAGTCTATCGAGGCTTTAGGTTGAATCCTTTATATGT
66 CTATGTCAGTGTATTCTCAATGGTTATAAAGTCTATCGAGGCTTTAGGTTGAATCCTTTATATAT
2005676 TAAATCCAACATTATCTCCAAAAACAATGAGTGATTAAATGGAATGGTCTGATAAGAAGATTGG
131 TAAATCCAACATTATCTCCAAAAACAATGAGTGATTAAATGGAATGGTCTGATAAGAAGATTGG
2005740 ATTGCATTCA
Statistics
Matches: 176, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
197 175 0.99
198 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (197 bp):
GTGGTATGCTATTAGATCACTATCATCTTTGGTTGAATGCTCTTTATGCTTTTGAGCATATATCT
CTATGTCAGTGTATTCTCAATGGTTATAAAGTCTATCGAGGCTTTAGGTTGAATCCTTTATATAT
TAAATCCAACATTATCTCCAAAAACAATGAGTGATTAAATGGAATGGTCTGATAAGAAGATTGGG
TT
Found at i:2014013 original size:17 final size:17
Alignment explanation
Indices: 2013991--2014023 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2013981 ACATCTTGGG
2013991 TTGTTTTTTAAATTTGT
1 TTGTTTTTTAAATTTGT
*
2014008 TTGTTTTTTAGATTTG
1 TTGTTTTTTAAATTTG
2014024 GGTTTTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70
Consensus pattern (17 bp):
TTGTTTTTTAAATTTGT
Found at i:2017810 original size:16 final size:15
Alignment explanation
Indices: 2017779--2017821 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
2017769 CCTTCATTCC
*
2017779 ATTATTATTATTACT
1 ATTATTATTTTTACT
2017794 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
2017810 ATCATTATTTTT
1 ATTATTATTTTT
2017822 CATACGTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:2017944 original size:16 final size:16
Alignment explanation
Indices: 2017923--2017955 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2017913 ACTATTGTTA
2017923 TTGTTATTATCATCAC
1 TTGTTATTATCATCAC
*
2017939 TTGTTATTCTCATCAC
1 TTGTTATTATCATCAC
2017955 T
1 T
2017956 ATTATTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.21, G:0.06, T:0.52
Consensus pattern (16 bp):
TTGTTATTATCATCAC
Found at i:2018050 original size:27 final size:27
Alignment explanation
Indices: 2018020--2018087 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
2018010 CATCATTACC
2018020 ATTATT-TTCATTATAAATTAATAGATT
1 ATTATTATT-ATTATAAATTAATAGATT
* * *
2018047 ATTATTATTATTATTATTTAATATATT
1 ATTATTATTATTATAAATTAATAGATT
* *
2018074 ATTTTTACTATTAT
1 ATTATTATTATTAT
2018088 CGTCATATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (27 bp):
ATTATTATTATTATAAATTAATAGATT
Found at i:2018163 original size:22 final size:22
Alignment explanation
Indices: 2018133--2018221 Score: 67
Period size: 22 Copynumber: 4.1 Consensus size: 22
2018123 TTATTATATC
*
2018133 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
2018155 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* * *
2018177 TTTTCCT-TTATTTTTGTATTTA
1 TTTTACTATTATTATTGT-TATA
*
2018199 CTTATA-TATTATTATT-TTATA
1 -TTTTACTATTATTATTGTTATA
2018220 TT
1 TT
2018222 AACTAATTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
20 2 0.04
21 11 0.21
22 29 0.56
23 10 0.19
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:2021115 original size:29 final size:31
Alignment explanation
Indices: 2021083--2021152 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
2021073 TAATAATAAT
2021083 AAAATTATATTTTAA-TCCTT-AAAAATATA
1 AAAATTATATTTTAACTCCTTAAAAAATATA
* *
2021112 AAAATT-TAATTTAACCTCTTTAAAAAATATA
1 AAAATTATATTTTAA-CTCCTTAAAAAATATA
*
2021143 AAAATAATAT
1 AAAATTATAT
2021153 ATTATTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
28 7 0.21
29 6 0.18
30 4 0.12
31 14 0.42
32 2 0.06
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (31 bp):
AAAATTATATTTTAACTCCTTAAAAAATATA
Found at i:2027419 original size:25 final size:26
Alignment explanation
Indices: 2027394--2027443 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
2027384 TATAAAAAAT
2027394 ATTAAATGAATTATATATAT-TTAATA
1 ATTAAAT-AATTATATATATATTAATA
* *
2027420 ATTATATATTTATATATATATTAA
1 ATTAAATAATTATATATATATTAA
2027444 ATCACCAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
ATTAAATAATTATATATATATTAATA
Found at i:2027424 original size:17 final size:18
Alignment explanation
Indices: 2027392--2027428 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
2027382 ATTATAAAAA
2027392 ATATTAAATGAATTATAT
1 ATATTAAATGAATTATAT
*
2027410 ATATTTAAT-AATTATAT
1 ATATTAAATGAATTATAT
2027427 AT
1 AT
2027429 TTATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
ATATTAAATGAATTATAT
Found at i:2027593 original size:39 final size:41
Alignment explanation
Indices: 2027539--2027629 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 41
2027529 TAAAATTATA
* * *
2027539 TTTAATACAATAAAATATTTATTATATTTAT-TTA-TATTT
1 TTTAATATAAAAAAATATTTATTATATTTATGGTAGTATTT
*
2027578 TTTAATATAAAAAAATATTTATTATATTTATGGTAGTGTTT
1 TTTAATATAAAAAAATATTTATTATATTTATGGTAGTATTT
2027619 TTTAATATAAA
1 TTTAATATAAA
2027630 TATTTTTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 29 0.63
40 2 0.04
41 15 0.33
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (41 bp):
TTTAATATAAAAAAATATTTATTATATTTATGGTAGTATTT
Found at i:2029136 original size:23 final size:23
Alignment explanation
Indices: 2029110--2029184 Score: 60
Period size: 25 Copynumber: 3.0 Consensus size: 23
2029100 TTGCCTATGT
2029110 TATTTTTTATTTTTTTCTAAAAA
1 TATTTTTTATTTTTTTCTAAAAA
* *
2029133 TATTTATTTTCTTTTTTTCATAATAA
1 TA-TT-TTTTATTTTTTTC-TAAAAA
* * *
2029159 TAATTTTATAATTTTTATATAAAAA
1 T-ATTTT-TTATTTTTTTCTAAAAA
2029184 T
1 T
2029185 TTTGGTAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
23 2 0.05
24 2 0.05
25 20 0.50
26 15 0.38
27 1 0.03
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTTTTTATTTTTTTCTAAAAA
Found at i:2030961 original size:25 final size:23
Alignment explanation
Indices: 2030914--2030966 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 23
2030904 AAATAATGAA
2030914 AATTTTTATTTTAATTAATTTTT
1 AATTTTTATTTTAATTAATTTTT
2030937 AATTTTTATAATTTAATTTAA-TTTT
1 AATTTTTAT--TTTAA-TTAATTTTT
2030962 AATTT
1 AATTT
2030967 AAAAATATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.33
25 14 0.52
26 4 0.15
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (23 bp):
AATTTTTATTTTAATTAATTTTT
Found at i:2031136 original size:30 final size:30
Alignment explanation
Indices: 2031037--2031138 Score: 93
Period size: 30 Copynumber: 3.4 Consensus size: 30
2031027 TGGGTAACAG
* *
2031037 AATATAGTTTAGATATCACTTAGTGTAACAA
1 AATATAGTTTAGGTATCACTTAGTG-AAAAA
* * * *
2031068 AGTATAATTTAAGTACCACTT-GTGATAAAA
1 AATATAGTTTAGGTATCACTTAGTGA-AAAA
*
2031098 AA-AAAGTTTAGGTATCAACTTAG-GAAAAA
1 AATATAGTTTAGGTATC-ACTTAGTGAAAAA
2031127 AATATAGTTTAG
1 AATATAGTTTAG
2031139 ATACCATTTT
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
29 17 0.31
30 21 0.38
31 17 0.31
ACGTcount: A:0.45, C:0.08, G:0.15, T:0.32
Consensus pattern (30 bp):
AATATAGTTTAGGTATCACTTAGTGAAAAA
Found at i:2032360 original size:37 final size:38
Alignment explanation
Indices: 2032305--2032380 Score: 111
Period size: 37 Copynumber: 2.0 Consensus size: 38
2032295 AATTAAATTA
2032305 AAATATTACTATTTTTAAGAGTAG-AAAAGTGTAATTTT
1 AAATATTACTATTTTTAAGAG-AGAAAAAGTGTAATTTT
* *
2032343 AAAT-TTATTATTTTTAAGAGGGAAAAAGTGTAATTTT
1 AAATATTACTATTTTTAAGAGAGAAAAAGTGTAATTTT
2032380 A
1 A
2032381 CCATTGTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
36 1 0.03
37 30 0.86
38 4 0.11
ACGTcount: A:0.42, C:0.01, G:0.14, T:0.42
Consensus pattern (38 bp):
AAATATTACTATTTTTAAGAGAGAAAAAGTGTAATTTT
Found at i:2036124 original size:12 final size:13
Alignment explanation
Indices: 2036107--2036138 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
2036097 TTATTAATTT
2036107 AATTTAA-TTTAA
1 AATTTAATTTTAA
2036119 AATTTAATTTTAA
1 AATTTAATTTTAA
2036132 AATTTAA
1 AATTTAA
2036139 AAAAAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTTAATTTTAA
Found at i:2037407 original size:6 final size:6
Alignment explanation
Indices: 2037396--2037433 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
2037386 CCCTTTTTTG
* *
2037396 AACCTT AACCTT AACCCT AACCCT AACCCT AACCCT AA
1 AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AA
2037434 TTTTTCCCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (6 bp):
AACCCT
Found at i:2042934 original size:17 final size:17
Alignment explanation
Indices: 2042909--2042948 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
2042899 AACTTTTAAT
* *
2042909 ATTAGAAAACAAGTAAA
1 ATTATAAAAAAAGTAAA
*
2042926 ATTATAAAAAAAGTTAA
1 ATTATAAAAAAAGTAAA
2042943 ATTATA
1 ATTATA
2042949 TATATGTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (17 bp):
ATTATAAAAAAAGTAAA
Found at i:2062096 original size:24 final size:24
Alignment explanation
Indices: 2062066--2062112 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
2062056 TGTTTCCATG
2062066 AAAGAGGGTGACATATTCTTTGGT
1 AAAGAGGGTGACATATTCTTTGGT
2062090 AAAGAGGGTGACATATTCTTTGG
1 AAAGAGGGTGACATATTCTTTGG
2062113 ACTGGGCGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.32
Consensus pattern (24 bp):
AAAGAGGGTGACATATTCTTTGGT
Found at i:2062213 original size:12 final size:12
Alignment explanation
Indices: 2062196--2062220 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2062186 ACCTTAGAAA
2062196 AATGCCTTGCGG
1 AATGCCTTGCGG
2062208 AATGCCTTGCGG
1 AATGCCTTGCGG
2062220 A
1 A
2062221 TTCTTGTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (12 bp):
AATGCCTTGCGG
Found at i:2064747 original size:29 final size:29
Alignment explanation
Indices: 2064715--2064774 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
2064705 AATGTTGAAT
*
2064715 TTTTTAT-AAATTTTAAATATATTCTTTAA
1 TTTTTATGAAATTTTAAATAT-TTATTTAA
*
2064744 TTTTTATGAAATTTTAATTATTTATTTAA
1 TTTTTATGAAATTTTAAATATTTATTTAA
2064773 TT
1 TT
2064775 ACTAAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTTTATGAAATTTTAAATATTTATTTAA
Found at i:2064748 original size:30 final size:30
Alignment explanation
Indices: 2064712--2064774 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
2064702 AAAAATGTTG
*
2064712 AATTTTTTAT-AAATTTTAAATATATTCTTT
1 AATTTTTTATGAAATTTTAAATAT-TTATTT
*
2064742 AA-TTTTTATGAAATTTTAATTATTTATTT
1 AATTTTTTATGAAATTTTAAATATTTATTT
2064771 AATT
1 AATT
2064775 ACTAAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (30 bp):
AATTTTTTATGAAATTTTAAATATTTATTT
Found at i:2074261 original size:46 final size:48
Alignment explanation
Indices: 2074210--2074311 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 48
2074200 TTTATTTTAC
* * *
2074210 TTATTTTTTATTAT-TAATTTTAAAAATTTTGAA-ATGTATATTTGAAA
1 TTATTTTTTAATATAT-ATTTTAAAAATTTTAAATATATATATTTGAAA
* *
2074257 -TATTTTATAATATATATTTTTAAAATTTTAAATATATATATTTGAAA
1 TTATTTTTTAATATATATTTTAAAAATTTTAAATATATATATTTGAAA
2074304 TTATTTTT
1 TTATTTTT
2074312 AAAAATTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
46 26 0.57
47 14 0.30
48 6 0.13
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (48 bp):
TTATTTTTTAATATATATTTTAAAAATTTTAAATATATATATTTGAAA
Found at i:2074293 original size:22 final size:22
Alignment explanation
Indices: 2074226--2074392 Score: 90
Period size: 23 Copynumber: 7.4 Consensus size: 22
2074216 TTTATTATTA
* *
2074226 ATTTTAAAAATTTTGAAATGTAT
1 ATTTTTAAAATTTT-AAATATAT
*
2074249 A-TTTGAAATATTTTATAATATAT
1 ATTTTTAAA-ATTTTA-AATATAT
2074272 ATTTTTAAAATTTTAAATATAT
1 ATTTTTAAAATTTTAAATATAT
* * *
2074294 ATATTTGAAATTATTTTTAAAAATTTT
1 AT-TTTTAAA--A-TTTTAAATA-TAT
** * * *
2074321 AAATATATATTTTTGAAAT-TAT
1 ATTTTTAAAATTTT-AAATATAT
* *
2074343 -TTTTTGAAATTTTGAATAT-T
1 ATTTTTAAAATTTTAAATATAT
* *
2074363 ATTTTTTAAATATTAAATATAT
1 ATTTTTAAAATTTTAAATATAT
2074385 ATTTTTAA
1 ATTTTTAA
2074393 TAATATAAAA
Statistics
Matches: 107, Mismatches: 25, Indels: 25
0.68 0.16 0.16
Matches are distributed among these distances:
20 4 0.04
21 24 0.22
22 26 0.24
23 29 0.27
24 9 0.08
25 1 0.01
26 11 0.10
27 3 0.03
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
ATTTTTAAAATTTTAAATATAT
Found at i:2074331 original size:57 final size:56
Alignment explanation
Indices: 2074233--2074392 Score: 164
Period size: 57 Copynumber: 2.8 Consensus size: 56
2074223 TTAATTTTAA
* *
2074233 AAATTTTGAAATGTATATTTGAAATATTTTATAATATATATTTTTAAAATT-TTAAATAT-
1 AAATTTTGAAAT-TAT-TTTTAAAAATTTTA-AATATATATTTTTAAAATTATT--ATATG
* * * *
2074292 ATATATTTGAAATTATTTTTAAAAATTTTAAATATATATTTTTGAAATTATTTTTTG
1 AAAT-TTTGAAATTATTTTTAAAAATTTTAAATATATATTTTTAAAATTATTATATG
* *
2074349 AAATTTTGAATATTATTTTT-TAAATATTAAATATATATTTTTAA
1 AAATTTTGAA-ATTATTTTTAAAAATTTTAAATATATATTTTTAA
2074393 TAATATAAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
56 29 0.33
57 30 0.34
58 14 0.16
59 6 0.07
60 8 0.09
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (56 bp):
AAATTTTGAAATTATTTTTAAAAATTTTAAATATATATTTTTAAAATTATTATATG
Found at i:2074346 original size:13 final size:14
Alignment explanation
Indices: 2074317--2074353 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
2074307 TTTTTAAAAA
2074317 TTTT-AAATATATAT
1 TTTTGAAAT-TATAT
2074331 TTTTGAAATTAT-T
1 TTTTGAAATTATAT
2074344 TTTTGAAATT
1 TTTTGAAATT
2074354 TTGAATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 7 0.32
15 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (14 bp):
TTTTGAAATTATAT
Found at i:2074357 original size:21 final size:20
Alignment explanation
Indices: 2074331--2074392 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
2074321 AAATATATAT
2074331 TTTTGAAATTATTTTTTGAAA
1 TTTTGAAATTATTTTTT-AAA
2074352 TTTTGAATATTATTTTTTAAA
1 TTTTGAA-ATTATTTTTTAAA
*
2074373 TATT-AAATATATATTTTTAA
1 TTTTGAAAT-TAT-TTTTTAA
2074393 TAATATAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 2 0.05
20 5 0.14
21 20 0.54
22 10 0.27
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
TTTTGAAATTATTTTTTAAA
Found at i:2074369 original size:35 final size:35
Alignment explanation
Indices: 2074273--2074373 Score: 150
Period size: 35 Copynumber: 2.9 Consensus size: 35
2074263 ATAATATATA
*
2074273 TTTTTAAAATTTTAAATATATATATTTGAAATTAT
1 TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
*
2074308 TTTTAAAAATTTTAAATATATATTTTTGAAATTAT
1 TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
* * *
2074343 TTTTTGAAATTTTGAATAT-TATTTTTTAAAT
1 TTTTTAAAATTTTAAATATATATTTTTGAAAT
2074374 ATTAAATATA
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
34 11 0.18
35 49 0.82
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (35 bp):
TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
Found at i:2074384 original size:23 final size:23
Alignment explanation
Indices: 2074357--2074405 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
2074347 TGAAATTTTG
* *
2074357 AATAT-TATTTTTTA-AATATTA
1 AATATATATTTTTAATAATATAA
2074378 AATATATATTTTTAATAATATAA
1 AATATATATTTTTAATAATATAA
2074401 AATAT
1 AATAT
2074406 TTAAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.21
22 8 0.33
23 11 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATATATATTTTTAATAATATAA
Found at i:2074405 original size:21 final size:21
Alignment explanation
Indices: 2074357--2074405 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
2074347 TGAAATTTTG
*
2074357 AATATTATTTTTTAAATATTAA
1 AATA-TATTTTTAAAATATTAA
2074379 ATATATATTTTTAATAATA-TAA
1 A-ATATATTTTTAA-AATATTAA
2074401 AATAT
1 AATAT
2074406 TTAAATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 13 0.54
23 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATATATTTTTAAAATATTAA
Found at i:2074487 original size:22 final size:23
Alignment explanation
Indices: 2074455--2074513 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
2074445 GTTTTTTAAT
2074455 ATTTTTAATATTATTTAATT-TG
1 ATTTTTAATATTATTTAATTATG
*
2074477 -TTTTATAATATT-TTAAATTATG
1 ATTTT-TAATATTATTTAATTATG
2074499 ATTTTTAA-ATTATTT
1 ATTTTTAATATTATTT
2074514 TTAAAGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
21 13 0.42
22 14 0.45
23 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (23 bp):
ATTTTTAATATTATTTAATTATG
Found at i:2074890 original size:9 final size:9
Alignment explanation
Indices: 2074848--2074895 Score: 51
Period size: 9 Copynumber: 4.9 Consensus size: 9
2074838 AAAAATCATA
2074848 ATTTAAAAT
1 ATTTAAAAT
2074857 ATTATAAAAT
1 ATT-TAAAAT
*
2074867 AAATTAAACAAT
1 --ATTTAA-AAT
2074879 ATTTAAAAT
1 ATTTAAAAT
2074888 ATTTAAAA
1 ATTTAAAA
2074896 ACTAATAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 14 0.42
10 11 0.33
11 2 0.06
12 6 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (9 bp):
ATTTAAAAT
Found at i:2074977 original size:20 final size:20
Alignment explanation
Indices: 2074929--2074988 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
2074919 GTATCTTTAA
2074929 AATATTT-AAATAT-T-TTAT
1 AATATTTAAAATATATATT-T
* *
2074947 ATTATTAAAAATATATATTT
1 AATATTTAAAATATATATTT
2074967 AATATTTAAAA-ATAATATTT
1 AATATTTAAAATAT-ATATTT
2074987 AA
1 AA
2074989 AAAATAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 5 0.15
19 8 0.24
20 19 0.56
21 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AATATTTAAAATATATATTT
Found at i:2074982 original size:13 final size:13
Alignment explanation
Indices: 2074966--2075004 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
2074956 AATATATATT
2074966 TAATATTTAAAAA
1 TAATATTTAAAAA
2074979 TAATATTTAAAAAA
1 TAATATTT-AAAAA
*
2074993 TAATATTCAAAA
1 TAATATTTAAAA
2075005 TTTTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:2075005 original size:12 final size:14
Alignment explanation
Indices: 2074966--2075004 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
2074956 AATATATATT
2074966 TAATATTT-AAAAA
1 TAATATTTAAAAAA
2074979 TAATATTTAAAAAA
1 TAATATTTAAAAAA
*
2074993 TAATATTCAAAA
1 TAATATTTAAAA
2075005 TTTTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
TAATATTTAAAAAA
Found at i:2075043 original size:22 final size:20
Alignment explanation
Indices: 2074950--2075045 Score: 66
Period size: 21 Copynumber: 4.5 Consensus size: 20
2074940 ATTTTATATT
*
2074950 ATTAAAAATATATATTTAATA
1 ATTAAAAATA-ATATTTAAAA
*
2074971 TTTAAAAATAATATTTAAAA
1 ATTAAAAATAATATTTAAAA
* * * *
2074991 AATAATATTCAAAATTTTAAAAA
1 ATTAAAAAT-AATA-TTT-AAAA
*
2075014 ATTCAAAATATATATTTAAAA
1 ATTAAAAATA-ATATTTAAAA
*
2075035 TTTTAAAAATA
1 -ATTAAAAATA
2075046 GTTTCAAATA
Statistics
Matches: 56, Mismatches: 14, Indels: 9
0.71 0.18 0.11
Matches are distributed among these distances:
20 14 0.25
21 16 0.29
22 15 0.27
23 11 0.20
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTAAAAATAATATTTAAAA
Found at i:2075063 original size:64 final size:63
Alignment explanation
Indices: 2074954--2075075 Score: 158
Period size: 64 Copynumber: 1.9 Consensus size: 63
2074944 TATATTATTA
* *
2074954 AAAATATATATTTAATATTTAAAAATAATATTTAAAAAATAATATTCAAAATTTTAAAAAATTC
1 AAAATATATATTTAAAATTTAAAAATAATATTCAAAAAATAATATTCAAAA-TTTAAAAAATTC
* * *
2075018 AAAATATATATTTAAAATTTTAAAAATAGT-TTC-AAATATATATATTTAAAATTTAAAA
1 AAAATATATATTTAAAA-TTTAAAAATAATATTCAAAAAATA-ATATTCAAAATTTAAAA
2075076 TATATATATT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
63 13 0.25
64 27 0.53
65 11 0.22
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (63 bp):
AAAATATATATTTAAAATTTAAAAATAATATTCAAAAAATAATATTCAAAATTTAAAAAATTC
Found at i:2075103 original size:23 final size:23
Alignment explanation
Indices: 2075034--2075124 Score: 87
Period size: 22 Copynumber: 3.8 Consensus size: 23
2075024 TATATTTAAA
*
2075034 ATTTTAAAAATAGTTTCAAATATAT
1 ATTTT-AAAATA-TTTAAAATATAT
2075059 ATATTT-AAA-ATTTAAAATATAT
1 AT-TTTAAAATATTTAAAATATAT
* *
2075081 ATATTATAAAATATTTCAAATATAC
1 AT-TT-TAAAATATTTAAAATATAT
*
2075106 ATTTTAAAATTTTTAAAAT
1 ATTTTAAAATATTTAAAAT
2075125 TTTTAAAATT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
22 16 0.28
23 15 0.26
24 8 0.14
25 15 0.26
26 3 0.05
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (23 bp):
ATTTTAAAATATTTAAAATATAT
Found at i:2075104 original size:16 final size:16
Alignment explanation
Indices: 2075040--2075104 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
2075030 TAAAATTTTA
2075040 AAAATAGTTTCAAATAT
1 AAAATA-TTTCAAATAT
* * *
2075057 -ATATATTTAAAATTT
1 AAAATATTTCAAATAT
* *
2075072 AAAATATAT-ATATTAT
1 AAAATATTTCA-AATAT
2075088 AAAATATTTCAAATAT
1 AAAATATTTCAAATAT
2075104 A
1 A
2075105 CATTTTAAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 7
0.69 0.17 0.13
Matches are distributed among these distances:
15 9 0.25
16 26 0.72
17 1 0.03
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (16 bp):
AAAATATTTCAAATAT
Found at i:2075127 original size:8 final size:9
Alignment explanation
Indices: 2075107--2075134 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
2075097 CAAATATACA
2075107 TTTTAAAAT
1 TTTTAAAAT
2075116 TTTTAAAAT
1 TTTTAAAAT
2075125 TTTTAAAAT
1 TTTTAAAAT
2075134 T
1 T
2075135 AATAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:2075169 original size:10 final size:11
Alignment explanation
Indices: 2075128--2075168 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 11
2075118 TTAAAATTTT
2075128 TAAAATTAATAA
1 TAAAA-TAATAA
2075140 TAAAA-AATAA
1 TAAAATAATAA
2075150 GTAAAATAA-AA
1 -TAAAATAATAA
2075161 TAAAATAA
1 TAAAATAA
2075169 AGATAAAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 13 0.48
11 7 0.26
12 7 0.26
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:2079036 original size:30 final size:29
Alignment explanation
Indices: 2079002--2079072 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 29
2078992 ATTAGTAATA
*
2079002 ATAAAATTATATTTTAACTTTTTTAAAATG
1 ATAAAATTATA-TTTAACTGTTTTAAAATG
* *
2079032 ATAAAATTTTGATTTAACTGTTTTAAAATT
1 ATAAAATTAT-ATTTAACTGTTTTAAAATG
*
2079062 ATAAAAATATA
1 ATAAAATTATA
2079073 AACTATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 1 0.03
30 33 0.94
31 1 0.03
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (29 bp):
ATAAAATTATATTTAACTGTTTTAAAATG
Found at i:2079345 original size:30 final size:30
Alignment explanation
Indices: 2079311--2079380 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
2079301 TTAATAAAGG
* * *
2079311 TAAAATTATATTTTGACTTTTTAAAAATGA
1 TAAAATTATAATTTAACTCTTTAAAAATGA
* * *
2079341 TAAAATTTTAATTTAACTCTTTAAAATTTA
1 TAAAATTATAATTTAACTCTTTAAAAATGA
*
2079371 TAAAAATATA
1 TAAAATTATA
2079381 GGTCATTAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (30 bp):
TAAAATTATAATTTAACTCTTTAAAAATGA
Found at i:2091665 original size:5 final size:5
Alignment explanation
Indices: 2091649--2091689 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
2091639 CCTATAGTAG
*
2091649 TATTA T-TTA TATTA TATTA TATAA TATTTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TA-TTA TATTA TATTA T
2091690 TTTAATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 4 0.12
5 24 0.75
6 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:2091668 original size:14 final size:14
Alignment explanation
Indices: 2091649--2091691 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 14
2091639 CCTATAGTAG
2091649 TATTAT-TTATATTA
1 TATTATATTAT-TTA
2091663 TATTATATAATATTTA
1 TATTATAT--TATTTA
2091679 TATTATATTATTT
1 TATTATATTATTT
2091692 TAATATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 11 0.42
15 1 0.04
16 11 0.42
17 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTATATTATTTA
Found at i:2091676 original size:21 final size:22
Alignment explanation
Indices: 2091652--2091700 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
2091642 ATAGTAGTAT
2091652 TATTTATATTATATTA-TATAA
1 TATTTATATTATATTATTATAA
*
2091673 TATTTATATTATATTATTTTAA
1 TATTTATATTATATTATTATAA
2091695 TATTTA
1 TATTTA
2091701 ATAATTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTTATATTATATTATTATAA
Found at i:2091681 original size:16 final size:15
Alignment explanation
Indices: 2091660--2091711 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
2091650 ATTATTTATA
2091660 TTATATTATATAATAT
1 TTATATTATATAAT-T
*
2091676 TTATATTATATTATT
1 TTATATTATATAATT
2091691 TTAATATT-TAATAATT
1 TT-ATATTAT-ATAATT
2091707 TTATA
1 TTATA
2091712 CATTTTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 7 0.22
16 25 0.78
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTATATTATATAATT
Found at i:2093840 original size:14 final size:14
Alignment explanation
Indices: 2093821--2093860 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
2093811 GCCTTTATCT
*
2093821 ATCTATTTATCTAA
1 ATCTATATATCTAA
2093835 ATCTATATATCTACA
1 ATCTATATATCTA-A
2093850 TATCTATATAT
1 -ATCTATATAT
2093861 ATATAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.52
15 1 0.04
16 10 0.43
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (14 bp):
ATCTATATATCTAA
Found at i:2093846 original size:8 final size:8
Alignment explanation
Indices: 2093820--2093865 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
2093810 TGCCTTTATC
*
2093820 TATCTATT
1 TATCTATA
2093828 TATCTA-A
1 TATCTATA
2093835 -ATCTATA
1 TATCTATA
*
2093842 TATCTACA
1 TATCTATA
2093850 TATCTATA
1 TATCTATA
*
2093858 TATATATA
1 TATCTATA
2093866 GAAAAGTAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 5 0.16
7 1 0.03
8 26 0.81
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (8 bp):
TATCTATA
Found at i:2095682 original size:21 final size:20
Alignment explanation
Indices: 2095656--2095752 Score: 72
Period size: 21 Copynumber: 4.5 Consensus size: 20
2095646 AATTTTGCTA
2095656 TATTATTATTTTATTGTTACT
1 TATTATTATTTTATT-TTACT
2095677 TATTATTATTTTTATTGTTA-T
1 TATTATTA-TTTTATT-TTACT
* * *
2095698 GTACATATTATTTATACTATACT
1 -TA-TTATTATTT-TATTTTACT
*
2095721 TAATATTATTATTATATTTAC-
1 TATTATTATT-TTAT-TTTACT
2095742 TATTATTATTT
1 TATTATTATTT
2095753 ATAAATATTA
Statistics
Matches: 63, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
20 1 0.02
21 28 0.44
22 25 0.40
23 9 0.14
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TATTATTATTTTATTTTACT
Found at i:2095736 original size:18 final size:18
Alignment explanation
Indices: 2095715--2095751 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2095705 TTATTTATAC
2095715 TATACTTAATATTATTAT
1 TATACTTAATATTATTAT
* *
2095733 TATATTTACTATTATTAT
1 TATACTTAATATTATTAT
2095751 T
1 T
2095752 TATAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (18 bp):
TATACTTAATATTATTAT
Found at i:2097429 original size:16 final size:15
Alignment explanation
Indices: 2097408--2097438 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
2097398 TTTAAACTCC
2097408 TTTAAATATTATTTAT
1 TTTAAATATT-TTTAT
2097424 TTTAAATATTTTTAT
1 TTTAAATATTTTTAT
2097439 ATGTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTAAATATTTTTAT
Found at i:2097757 original size:25 final size:26
Alignment explanation
Indices: 2097729--2097781 Score: 65
Period size: 24 Copynumber: 2.1 Consensus size: 26
2097719 AATACTAATG
* *
2097729 ATTTTTAAATTACT-TTATATTATTT
1 ATTTTTAAATTACTCTTATAGTATCT
*
2097754 A-TTTTAAATTGCTCTTATAGTATCT
1 ATTTTTAAATTACTCTTATAGTATCT
2097779 ATT
1 ATT
2097782 CTAAACCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
24 11 0.48
25 11 0.48
26 1 0.04
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (26 bp):
ATTTTTAAATTACTCTTATAGTATCT
Found at i:2097760 original size:24 final size:25
Alignment explanation
Indices: 2097731--2097786 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
2097721 TACTAATGAT
* *
2097731 TTTTAAATTACT-TTATATTATTTA
1 TTTTAAATTACTCTTATAGTATCTA
*
2097755 TTTTAAATTGCTCTTATAGTATCTA
1 TTTTAAATTACTCTTATAGTATCTA
*
2097780 TTCTAAA
1 TTTTAAA
2097787 CCTTTATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.32, C:0.09, G:0.04, T:0.55
Consensus pattern (25 bp):
TTTTAAATTACTCTTATAGTATCTA
Found at i:2098765 original size:10 final size:11
Alignment explanation
Indices: 2098741--2098786 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
2098731 GGTTTCGACA
2098741 ATTATTATATT
1 ATTATTATATT
2098752 ATTATTAT-TT
1 ATTATTATATT
2098762 ATTATTATATT
1 ATTATTATATT
*
2098773 -TATATAATATT
1 AT-TATTATATT
2098784 ATT
1 ATT
2098787 GATAGGTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 11 0.35
11 19 0.61
12 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATTATTATATT
Found at i:2098921 original size:21 final size:20
Alignment explanation
Indices: 2098878--2098921 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
2098868 AACGCCATAT
* * *
2098878 TATGTATATATTTTTAATGC
1 TATGTATACATTTGTAATAC
2098898 TATGTATACACTTTGTAATAC
1 TATGTATACA-TTTGTAATAC
2098919 TAT
1 TAT
2098922 TATTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (20 bp):
TATGTATACATTTGTAATAC
Found at i:2098948 original size:25 final size:28
Alignment explanation
Indices: 2098898--2098953 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 28
2098888 TTTTTAATGC
2098898 TATGTATACACTTTGTAATACTATTA-T
1 TATGTATACACTTTGTAATACTATTAGT
*
2098925 TATGTATATA-TTT-TAATA-TCATTAGT
1 TATGTATACACTTTGTAATACT-ATTAGT
2098951 TAT
1 TAT
2098954 ACATTTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 1 0.04
25 9 0.35
26 7 0.27
27 9 0.35
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (28 bp):
TATGTATACACTTTGTAATACTATTAGT
Found at i:2101614 original size:31 final size:31
Alignment explanation
Indices: 2101579--2101645 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
2101569 CTTCCTGCAT
* *
2101579 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
2101610 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
2101641 TAAAA
1 TAAAA
2101646 AAATGCAACC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.60, C:0.18, G:0.04, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:2102896 original size:9 final size:9
Alignment explanation
Indices: 2102882--2102911 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
2102872 GCAGTTTATT
2102882 TAAAAAAAA
1 TAAAAAAAA
2102891 TAAAAAAAAA
1 T-AAAAAAAA
2102901 TAAAAAAAA
1 TAAAAAAAA
2102910 TA
1 TA
2102912 CCTTTTGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:2102898 original size:10 final size:10
Alignment explanation
Indices: 2102883--2102909 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
2102873 CAGTTTATTT
2102883 AAAAAAAATA
1 AAAAAAAATA
2102893 AAAAAAAATA
1 AAAAAAAATA
2102903 AAAAAAA
1 AAAAAAA
2102910 TACCTTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:2103682 original size:18 final size:18
Alignment explanation
Indices: 2103661--2103709 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
2103651 TTATTATAAC
2103661 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
2103679 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
2103697 TA-TTATATATATC
1 TATTTATATATATC
2103710 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:2103682 original size:33 final size:35
Alignment explanation
Indices: 2103645--2103709 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
2103635 CCTATTATTA
2103645 TTATTAT-TA-TTATAAC-TATTTATATATATCATC
1 TTATTATATATTTATAACTTA-TTATATATATCATC
*
2103678 TTATTATATATTTATATCTTATTATATATATC
1 TTATTATATATTTATAACTTATTATATATATC
2103710 TATATATCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.25
34 2 0.07
35 17 0.61
36 2 0.07
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (35 bp):
TTATTATATATTTATAACTTATTATATATATCATC
Found at i:2116164 original size:46 final size:44
Alignment explanation
Indices: 2116097--2116465 Score: 212
Period size: 44 Copynumber: 8.5 Consensus size: 44
2116087 ATTATACAGG
*
2116097 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* *
2116143 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGA-T-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAG--A
* * * * * *
2116187 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * * *
2116226 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--ACA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGATTCAGA
* *
2116267 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* * ** ****
2116313 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * * *
2116357 TCTTATCTCCCTGAGATTACAGCGGATCAGATCGAAGA--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCA-GA
* * * * **
2116400 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGATTCA-GA
* *
2116444 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
2116466 CAGAGTAGAT
Statistics
Matches: 250, Mismatches: 53, Indels: 42
0.72 0.15 0.12
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 23 0.09
40 1 0.00
41 28 0.11
42 6 0.02
43 31 0.12
44 89 0.36
45 1 0.00
46 69 0.28
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
Found at i:2116214 original size:44 final size:46
Alignment explanation
Indices: 2116100--2116427 Score: 173
Period size: 46 Copynumber: 7.5 Consensus size: 46
2116090 ATACAGGTCT
* * * *
2116100 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
*
2116146 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGT-A-ATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAAT-GTCAGATCC
* * * * *
2116190 TATCTCCTTGAGATTACAATGGAGCGGAT--TA-AA-G---GATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* * * * * *
2116229 TATCTCTCTGA-AGTTACAGTAGAGAAGATC--A-CA--TCAGGTCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATGTCAGATCC
** * * *
2116270 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* ** * *
2116316 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-G--AGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATGTCAGATCC
* * * *
2116360 TATCTCCCTGAGATTACAGCGGATCAGATC---GAA-GACACTATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCA-GATCC
2116403 TATCTCCCTGA-AGTTACAGTGGAGC
1 TATCTCCCTGAGA-TTACAGTGGAGC
2116428 GGATTAAAAT
Statistics
Matches: 220, Mismatches: 43, Indels: 41
0.72 0.14 0.13
Matches are distributed among these distances:
38 1 0.00
39 26 0.12
40 3 0.01
41 28 0.13
42 5 0.02
43 25 0.11
44 61 0.28
45 3 0.01
46 67 0.30
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
Found at i:2116476 original size:87 final size:87
Alignment explanation
Indices: 2116316--2116477 Score: 211
Period size: 87 Copynumber: 1.9 Consensus size: 87
2116306 TTTCAGATCT
* * ** *
2116316 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGAAAGAGATCTTATCTCCCTGAGATTACAGCA
2116381 GATCAGATCGAAGACACTATCC
66 GATCAGATCGAAGACACTATCC
* * * *
2116403 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG-GATCTTATCTCTCTGAGGTTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAGAAAGAGATCTTATCTCCCTGAGATTACAGC
2116467 AGAGT-AGATCG
65 AGA-TCAGATCG
2116478 CATCAAGTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 59 0.92
88 5 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGAAAGAGATCTTATCTCCCTGAGATTACAGCA
GATCAGATCGAAGACACTATCC
Found at i:2116581 original size:218 final size:214
Alignment explanation
Indices: 2116140--2116563 Score: 455
Period size: 218 Copynumber: 2.0 Consensus size: 214
2116130 AAAGAATTTC
* * *
2116140 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
* *
2116205 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAAGTCT
* * * * * * *
2116270 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATATAAGAGCGTATCTCCCTAAAGTTACAG
* * ** *
2116335 TGGAGCAGATTGAAGCCAG
196 CGGAACAGACAGAAGACAG
* *
2116354 AGATCTTATCTCCCTGAGATTACAGCGGATCAGATCGAAGACACT-ATCCTATCTCCCTGA-AGT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGA-T
* * * *
2116417 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCATC
65 TACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATC
* * * *
2116482 AAGTCTTATTTCCCTGAAGA-TGCAGTGGAACAGACTGAAA-ACA-ATAAG-GCGTGTCTCCCTA
125 AAGTCTTATCTCCCTG-AGATTACAGTGGAACAGAC-CAAAGA-ATATAAGAGCGTATCTCCCTA
** *
2116543 AAGTTGTAGCGGAACGGACAG
187 AAGTTACAGCGGAACAGACAG
2116564 TAGATAGCAA
Statistics
Matches: 172, Mismatches: 29, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
212 1 0.01
213 28 0.16
214 42 0.24
217 22 0.13
218 72 0.42
219 7 0.04
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (214 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAAGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATATAAGAGCGTATCTCCCTAAAGTTACAG
CGGAACAGACAGAAGACAG
Found at i:2117451 original size:8 final size:8
Alignment explanation
Indices: 2117438--2117462 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
2117428 AGTTTATTTA
2117438 AAAAAAAT
1 AAAAAAAT
2117446 AAAAAAAT
1 AAAAAAAT
2117454 AAAAAAAT
1 AAAAAAAT
2117462 A
1 A
2117463 CCTTTTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:2118230 original size:18 final size:18
Alignment explanation
Indices: 2118209--2118257 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
2118199 TTATTATAAC
2118209 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
2118227 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
2118245 TA-TTATATATATC
1 TATTTATATATATC
2118258 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:2123416 original size:14 final size:15
Alignment explanation
Indices: 2123392--2123421 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
2123382 CACAAACTTC
2123392 AGAATTTATGTATTT
1 AGAATTTATGTATTT
2123407 AGAA-TTATGTATTT
1 AGAATTTATGTATTT
2123421 A
1 A
2123422 TATAAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
AGAATTTATGTATTT
Found at i:2124432 original size:40 final size:42
Alignment explanation
Indices: 2124381--2124482 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 42
2124371 TTTAGTGGCG
* * *
2124381 TTTTACAAAAGCGTCGCTATTTCTC-AGTTTTT-GCGGCGTT
1 TTTTACAAAAGCGCCACTAATTCTCTAGTTTTTAGCGGCGTT
* * *
2124421 TTTTACGAAAGCGCCACTAATTCTCTATTTTTTAGTGGCGTT
1 TTTTACAAAAGCGCCACTAATTCTCTAGTTTTTAGCGGCGTT
*
2124463 TTTGTA-AAAA-CGCCGCTAAT
1 TTT-TACAAAAGCGCCACTAAT
2124483 GCCTCTGCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
40 21 0.41
41 15 0.29
42 13 0.25
43 2 0.04
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.40
Consensus pattern (42 bp):
TTTTACAAAAGCGCCACTAATTCTCTAGTTTTTAGCGGCGTT
Found at i:2124482 original size:41 final size:39
Alignment explanation
Indices: 2124371--2124482 Score: 109
Period size: 41 Copynumber: 2.8 Consensus size: 39
2124361 CAATTAAACA
** * *
2124371 TTTAGTGGCGTTTTACAAAAGCGTCGCTATTTCTCAGTT
1 TTTAGTGGCGTTTTTTAAAAGCGCCGCTAATTCTCAGTT
* * *
2124410 TTT-GCGGCGTTTTTTACGAAAGCGCCACTAATTCTCTATTT
1 TTTAGTGGCGTTTTTTA--AAAGCGCCGCTAATTCTC-AGTT
*
2124451 TTTAGTGGCGTTTTTGTAAAAACGCCGCTAAT
1 TTTAGTGGCGTTTTT-TAAAAGCGCCGCTAAT
2124483 GCCTCTGCAC
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
38 10 0.17
39 3 0.05
40 15 0.26
41 18 0.31
42 10 0.17
43 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (39 bp):
TTTAGTGGCGTTTTTTAAAAGCGCCGCTAATTCTCAGTT
Found at i:2125866 original size:29 final size:29
Alignment explanation
Indices: 2125815--2125870 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
2125805 TAGTGTTTAT
*
2125815 GTTTTATGTTTTAAAATTTAGGGTTTAGG
1 GTTTAATGTTTTAAAATTTAGGGTTTAGG
*
2125844 GTTTAATG-TTTAAGATTTAAGGGTTTA
1 GTTTAATGTTTTAAAATTT-AGGGTTTA
2125871 CAGAAAGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (29 bp):
GTTTAATGTTTTAAAATTTAGGGTTTAGG
Found at i:2126197 original size:41 final size:41
Alignment explanation
Indices: 2126163--2126371 Score: 262
Period size: 41 Copynumber: 5.1 Consensus size: 41
2126153 TTTTTGCGGC
* * *
2126163 TTTTGGACCAAAAACGCCGCTATTAATCAGTTTTTAGTGGCG
1 TTTTGGA-TAAAAACGCCGCAATTGATCAGTTTTTAGTGGCG
*
2126205 TTTTGGATAAAAACGCCACAATTGATCAGTTTTTAGTGGCG
1 TTTTGGATAAAAACGCCGCAATTGATCAGTTTTTAGTGGCG
* * * *
2126246 TTTTGGATAAAAGCACCACAATT-ATTCAATTTTTAGTGGCG
1 TTTTGGATAAAAACGCCGCAATTGA-TCAGTTTTTAGTGGCG
* *
2126287 TTTGGGATAAAAACGCCGCAATTGATCAGCTTTTAGTGGCG
1 TTTTGGATAAAAACGCCGCAATTGATCAGTTTTTAGTGGCG
* *
2126328 TTTTGCG--AAAAACGCCGCTATTGACCAGTTTTTAGTGGCG
1 TTTTG-GATAAAAACGCCGCAATTGATCAGTTTTTAGTGGCG
2126368 TTTT
1 TTTT
2126372 TACCAAAAAC
Statistics
Matches: 147, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
40 35 0.24
41 103 0.70
42 9 0.06
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTTGGATAAAAACGCCGCAATTGATCAGTTTTTAGTGGCG
Found at i:2126399 original size:81 final size:78
Alignment explanation
Indices: 2126172--2126427 Score: 278
Period size: 82 Copynumber: 3.2 Consensus size: 78
2126162 CTTTTGGACC
* *
2126172 AAAAACGCCGCTATTAATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTT
1 AAAAACGCCGCTATT-ATCAGTTTTTAGTGGCGTTTT-GATAAAAACGCCGCAATTGATCAGCTT
2126237 TTAGTGGCGTTTTGG
64 TTAGTGGCGTTTTGG
* * * * *
2126252 ATAAAAGCACCACAATTATTCAATTTTTAGTGGCGTTTGGGATAAAAACGCCGCAATTGATCAGC
1 A-AAAA-CGCCGCTATTA-TCAGTTTTTAGTGGCGTTT-TGATAAAAACGCCGCAATTGATCAGC
2126317 TTTTAGTGGCGTTTTGCG
62 TTTTAGTGGCGTTTTG-G
* * * * * * *
2126335 AAAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTTACCAAAAACGCCGCTATAGTTTAGCTT
1 AAAAACGCCGCTATT-ATCAGTTTTTAGTGGCGTTTTGA-TAAAAACGCCGCAATTGATCAGCTT
* *
2126400 TTAGTGGCATTTCGG
64 TTAGTGGCGTTTTGG
*
2126415 ACAAACGCCGCTA
1 AAAAACGCCGCTA
2126428 ATGTTTATTA
Statistics
Matches: 147, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
80 15 0.10
81 61 0.41
82 69 0.47
83 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (78 bp):
AAAAACGCCGCTATTATCAGTTTTTAGTGGCGTTTTGATAAAAACGCCGCAATTGATCAGCTTTT
AGTGGCGTTTTGG
Found at i:2126402 original size:41 final size:40
Alignment explanation
Indices: 2126169--2126407 Score: 171
Period size: 41 Copynumber: 5.9 Consensus size: 40
2126159 CGGCTTTTGG
* *
2126169 ACCAAAAACGCCGCTATTAATCAGTTTTTAGTGGCGTTTT
1 ACCAAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTT
* * * *
2126209 GGA-TAAAAACGCCACAATTGATCAGTTTTTAGTGGCGTTTT
1 --ACCAAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTT
* * * * * ** *
2126250 GGA-TAAAAGCACCACAATT-ATTCAATTTTTAGTGGCGTTTGGG
1 --ACCAAAAACGCCGCTATTGA-TCAGCTTTTAGTGGCGTTT--T
* *
2126293 A-TAAAAACGCCGCAATTGATCAGCTTTTAGTGGCGTTTT
1 ACCAAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTT
* * * *
2126332 GCGAAAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTT
1 ACCAAAAACGCCGCTATTGATCAGCTTTTAGTGGCG-TTTT
* * *
2126373 ACCAAAAACGCCGCTATAGTTTAGCTTTTAGTGGC
1 ACCAAAAACGCCGCTATTGATCAGCTTTTAGTGGC
2126408 ATTTCGGACA
Statistics
Matches: 165, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
40 31 0.19
41 132 0.80
42 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (40 bp):
ACCAAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTT
Found at i:2131734 original size:15 final size:17
Alignment explanation
Indices: 2131688--2131746 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
2131678 ATATTTATAT
2131688 ATTTTTTATT-AATTTA
1 ATTTTTTATTAAATTTA
2131704 ATTTTTATAGTTAAATTT-
1 ATTTTT-TA-TTAAATTTA
2131722 ATTTTTT-TTAAATATTA
1 ATTTTTTATTAAAT-TTA
2131739 ATTTTTTA
1 ATTTTTTA
2131747 ACGATACTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
15 6 0.16
16 8 0.22
17 10 0.27
18 8 0.22
19 5 0.14
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
ATTTTTTATTAAATTTA
Found at i:2134053 original size:30 final size:30
Alignment explanation
Indices: 2133984--2134053 Score: 70
Period size: 30 Copynumber: 2.4 Consensus size: 30
2133974 AATATACGGG
* * *
2133984 AATA-AGTTGCTCGCACGAGCTGACAGTAT
1 AATAGAGTTGCTCACACAAGCTAACAGTAT
** * *
2134013 ACCAGGGTTGCTCACACAAGCTAACATTAT
1 AATAGAGTTGCTCACACAAGCTAACAGTAT
2134043 AATAGAGTTGC
1 AATAGAGTTGC
2134054 CCAAAAAAGC
Statistics
Matches: 30, Mismatches: 10, Indels: 1
0.73 0.24 0.02
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (30 bp):
AATAGAGTTGCTCACACAAGCTAACAGTAT
Done.