Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 71 of 349
Found at i:20991254 original size:117 final size:117
Alignment explanation
Indices: 20991048--20991283 Score: 472
Period size: 117 Copynumber: 2.0 Consensus size: 117
20991038 TCTCGCTTTC
20991048 ACACTCAAAACCTTAACTTTCCCAAGAAACAAAGCTAATTCTCAGCCCCGATCCAACTCTAATTC
1 ACACTCAAAACCTTAACTTTCCCAAGAAACAAAGCTAATTCTCAGCCCCGATCCAACTCTAATTC
20991113 AGATTTTAGACTTTGAACGACTGGGGTCTGCAAGTGGTCAGCCGCTACTCGT
66 AGATTTTAGACTTTGAACGACTGGGGTCTGCAAGTGGTCAGCCGCTACTCGT
20991165 ACACTCAAAACCTTAACTTTCCCAAGAAACAAAGCTAATTCTCAGCCCCGATCCAACTCTAATTC
1 ACACTCAAAACCTTAACTTTCCCAAGAAACAAAGCTAATTCTCAGCCCCGATCCAACTCTAATTC
20991230 AGATTTTAGACTTTGAACGACTGGGGTCTGCAAGTGGTCAGCCGCTACTCGT
66 AGATTTTAGACTTTGAACGACTGGGGTCTGCAAGTGGTCAGCCGCTACTCGT
20991282 AC
1 AC
20991284 TCGGACCAAA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 119 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (117 bp):
ACACTCAAAACCTTAACTTTCCCAAGAAACAAAGCTAATTCTCAGCCCCGATCCAACTCTAATTC
AGATTTTAGACTTTGAACGACTGGGGTCTGCAAGTGGTCAGCCGCTACTCGT
Found at i:20993030 original size:3 final size:3
Alignment explanation
Indices: 20993017--20993052 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
20993007 ACTAATATGC
*
20993017 ATA ATA A-A ATA ATA ATA ATA ATA ATA GTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
20993053 CAAAATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:20993154 original size:22 final size:23
Alignment explanation
Indices: 20993126--20993177 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
20993116 AATGAGAAAT
20993126 AAATAAATATATA-AATAAAAA-G
1 AAATAAA-ATATACAATAAAAAGG
*
20993148 AAATAAAATGTACAATAAAAAGG
1 AAATAAAATATACAATAAAAAGG
20993171 AAATAAA
1 AAATAAA
20993178 CCAATTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 4 0.15
22 15 0.56
23 8 0.30
ACGTcount: A:0.71, C:0.02, G:0.08, T:0.19
Consensus pattern (23 bp):
AAATAAAATATACAATAAAAAGG
Found at i:20998051 original size:17 final size:17
Alignment explanation
Indices: 20998029--20998083 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
20998019 TTAATGTATC
20998029 AATATTTAAATTATTTA
1 AATATTTAAATTATTTA
* *
20998046 AATATTTCATTTATCATT-
1 AATATTTAAATTAT--TTA
20998064 -ATA-TTAAATTATTTA
1 AATATTTAAATTATTTA
20998079 AATAT
1 AATAT
20998084 CATTTATCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
14 2 0.07
16 10 0.34
17 15 0.52
19 2 0.07
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (17 bp):
AATATTTAAATTATTTA
Found at i:20998076 original size:33 final size:32
Alignment explanation
Indices: 20998025--20998128 Score: 153
Period size: 31 Copynumber: 3.3 Consensus size: 32
20998015 ATATTTAATG
*
20998025 TATCAATAT-TTAAATTATTTAAATATTTCATT
1 TATCATTATATTAAATTATTTAAATA-TTCATT
20998057 TATCATTATATTAAATTATTTAAATA-TCATT
1 TATCATTATATTAAATTATTTAAATATTCATT
20998088 TATCATTATATTAAATT-TTTAAATATT-ATT
1 TATCATTATATTAAATTATTTAAATATTCATT
*
20998118 TATTATTATAT
1 TATCATTATAT
20998129 ATATTTAAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
30 21 0.31
31 23 0.34
32 8 0.12
33 16 0.24
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (32 bp):
TATCATTATATTAAATTATTTAAATATTCATT
Found at i:20998090 original size:31 final size:31
Alignment explanation
Indices: 20998025--20998128 Score: 149
Period size: 30 Copynumber: 3.4 Consensus size: 31
20998015 ATATTTAATG
*
20998025 TATCAATAT-TTAAATTATTTAAATATTTCATT
1 TATCATTATATTAAATTATTTAAATA--TCATT
20998057 TATCATTATATTAAATTATTTAAATATCATT
1 TATCATTATATTAAATTATTTAAATATCATT
*
20998088 TATCATTATATTAAATT-TTTAAATATTATT
1 TATCATTATATTAAATTATTTAAATATCATT
*
20998118 TATTATTATAT
1 TATCATTATAT
20998129 ATATTTAAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
30 22 0.32
31 22 0.32
32 8 0.12
33 16 0.24
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (31 bp):
TATCATTATATTAAATTATTTAAATATCATT
Found at i:20998192 original size:27 final size:29
Alignment explanation
Indices: 20998133--20998192 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 29
20998123 TTATATATAT
*
20998133 TTAAAATAATTTATATATCATTAATTTAA
1 TTAAAATAATTTATATATAATTAATTTAA
20998162 --AAAATAATTTATAT-TAATTAA-TTAA
1 TTAAAATAATTTATATATAATTAATTTAA
20998187 TTAAAA
1 TTAAAA
20998193 AATATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 4 0.14
26 6 0.21
27 18 0.64
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (29 bp):
TTAAAATAATTTATATATAATTAATTTAA
Found at i:20999578 original size:3 final size:3
Alignment explanation
Indices: 20999570--20999600 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
20999560 TTGTATTTCC
20999570 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
20999601 TTTCTTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:21000544 original size:21 final size:21
Alignment explanation
Indices: 21000503--21000548 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
21000493 GTTGAACCAA
21000503 ATTTTATACTTTTTAATATTTT
1 ATTTTATACTTTTTAATA-TTT
21000525 ATTTT-TA-TTTTTAATAATTT
1 ATTTTATACTTTTTAAT-ATTT
21000545 ATTT
1 ATTT
21000549 GCATTGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 15 0.65
21 3 0.13
22 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTTATACTTTTTAATATTT
Found at i:21006055 original size:26 final size:26
Alignment explanation
Indices: 21006019--21006128 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
21006009 TGATACAAAT
21006019 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
21006045 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
21006071 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
21006097 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
21006123 TGATAA
1 TGATAA
21006129 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:21007644 original size:26 final size:26
Alignment explanation
Indices: 21007615--21007667 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21007605 TTTACAGTTT
*
21007615 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
21007641 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
21007667 T
1 T
21007668 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:21011808 original size:26 final size:26
Alignment explanation
Indices: 21011772--21011878 Score: 160
Period size: 26 Copynumber: 4.1 Consensus size: 26
21011762 TGATACAAAT
21011772 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
**
21011798 TGATAATAGGTTAGGTAAATAATCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
21011824 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
21011850 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
21011876 TGA
1 TGA
21011879 GAAGAATTTC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:21013390 original size:26 final size:26
Alignment explanation
Indices: 21013360--21013412 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21013350 TTTATAGTTT
21013360 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
21013386 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
21013412 T
1 T
21013413 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:21013904 original size:137 final size:137
Alignment explanation
Indices: 21013658--21013944 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
21013648 GAGTAGTCTC
*
21013658 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
*
21013723 TGTTATTTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
21013788 ACTGTTA
131 ACTGTTA
21013795 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
* *
21013860 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
21013925 ACTGTTA
131 ACTGTTA
**
21013932 CCTGAATGGGCTT
1 CCCAAATGGGCTT
21013945 AGGCCTAATG
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGAGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:21014926 original size:14 final size:14
Alignment explanation
Indices: 21014909--21014954 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
21014899 ACCTTGAACT
*
21014909 TTAAATCCTAAACC
1 TTAAACCCTAAACC
*
21014923 TTAAACCCTAAACA
1 TTAAACCCTAAACC
*
21014937 TCAAACCCTAAA-C
1 TTAAACCCTAAACC
21014950 TTAAA
1 TTAAA
21014955 ATTCAAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 4 0.15
14 23 0.85
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (14 bp):
TTAAACCCTAAACC
Found at i:21014934 original size:21 final size:21
Alignment explanation
Indices: 21014894--21014934 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
21014884 ATTTTTTTAC
* **
21014894 CCTAAACCTTGAACTTTAAAT
1 CCTAAACCTTAAACCCTAAAT
21014915 CCTAAACCTTAAACCCTAAA
1 CCTAAACCTTAAACCCTAAA
21014935 CATCAAACCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.02, T:0.27
Consensus pattern (21 bp):
CCTAAACCTTAAACCCTAAAT
Found at i:21014942 original size:21 final size:21
Alignment explanation
Indices: 21014918--21014991 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 21
21014908 TTTAAATCCT
21014918 AAACCTTAAACCCTAAACATC
1 AAACCTTAAACCCTAAACATC
* *
21014939 AAACCCTAAA-CTTAAA-ATTC
1 AAACCTTAAACCCTAAACA-TC
*
21014959 AAAATCC-TAAACCC-AAACCTC
1 -AAA-CCTTAAACCCTAAACATC
*
21014980 AAACTTTAAACC
1 AAACCTTAAACC
21014992 TTGAACCCTG
Statistics
Matches: 42, Mismatches: 5, Indels: 13
0.70 0.08 0.22
Matches are distributed among these distances:
19 2 0.05
20 16 0.38
21 21 0.50
22 3 0.07
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACCTTAAACCCTAAACATC
Found at i:21018350 original size:26 final size:26
Alignment explanation
Indices: 21018320--21018399 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
21018310 TGAAATTCCC
21018320 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
21018346 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21018372 ATCATGG-ACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
21018396 ATCA
1 ATCA
21018400 ATTTGTTATC
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
24 9 0.17
25 12 0.23
26 31 0.60
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:21025138 original size:16 final size:16
Alignment explanation
Indices: 21025117--21025158 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
21025107 GGACAAAACT
21025117 TTGTTCTTTTCACCCC
1 TTGTTCTTTTCACCCC
21025133 TTGTTCTTTTCACCCC
1 TTGTTCTTTTCACCCC
*
21025149 TTTTTCTTTT
1 TTGTTCTTTT
21025159 AATAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.05, C:0.31, G:0.05, T:0.60
Consensus pattern (16 bp):
TTGTTCTTTTCACCCC
Found at i:21025246 original size:26 final size:26
Alignment explanation
Indices: 21025216--21025297 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
21025206 TGAAATTCCC
21025216 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
21025242 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21025268 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21025294 ATCA
1 ATCA
21025298 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:21026878 original size:42 final size:43
Alignment explanation
Indices: 21026769--21026887 Score: 156
Period size: 41 Copynumber: 2.9 Consensus size: 43
21026759 CGTATAAAAT
* * *
21026769 ACCGGCA-CAGAGCCTGCTAGGTAATAAACCTGAT-TCAAGAC
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
* *
21026810 ACCGGCAT-AAAGCATGCTAGGAAATAAGCCTGATATC-ATAC
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
*
21026851 ACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGATAT
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATAT
21026888 ATCACTGTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 40 0.59
42 28 0.41
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.18
Consensus pattern (43 bp):
ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
Found at i:21027023 original size:27 final size:29
Alignment explanation
Indices: 21026984--21027041 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
21026974 CGGCTATAAC
*
21026984 CATAGAAATTCATACA-ATT-AAATTCAA
1 CATAGAAAATCATACACATTCAAATTCAA
*
21027011 CATATAAAATCATACACATTCAAATTCAA
1 CATAGAAAATCATACACATTCAAATTCAA
21027040 CA
1 CA
21027042 ACGTTTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 14 0.52
28 3 0.11
29 10 0.37
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.28
Consensus pattern (29 bp):
CATAGAAAATCATACACATTCAAATTCAA
Found at i:21031709 original size:43 final size:42
Alignment explanation
Indices: 21031662--21031776 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
21031652 TATCACATAT
* * *
21031662 CGATGCCACTGTCCAAGATAGGGTCTTACACAAAATCATAATA
1 CGATGCCAATGTCCAAGACACGGTCTTACACAAAAT-ATAATA
* *
21031705 CGATGCCAATGTCCCAA-ACATGGTCTTACACATAATATAATA
1 CGATGCCAATGT-CCAAGACACGGTCTTACACAAAATATAATA
* * *
21031747 CAATGCTAATGTCCCAGACACGGTCTTACA
1 CGATGCCAATGTCCAAGACACGGTCTTACA
21031777 TGTAATCACA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
41 3 0.05
42 28 0.45
43 27 0.44
44 4 0.06
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (42 bp):
CGATGCCAATGTCCAAGACACGGTCTTACACAAAATATAATA
Found at i:21031758 original size:42 final size:43
Alignment explanation
Indices: 21031683--21031776 Score: 136
Period size: 42 Copynumber: 2.2 Consensus size: 43
21031673 TCCAAGATAG
* *
21031683 GGTCTTACACAAAATCATAATACGATGCCAATGTCCCAAACAT
1 GGTCTTACACAAAATCATAATACAATGCCAATGTCCCAAACAC
* * *
21031726 GGTCTTACACATAAT-ATAATACAATGCTAATGTCCCAGACAC
1 GGTCTTACACAAAATCATAATACAATGCCAATGTCCCAAACAC
21031768 GGTCTTACA
1 GGTCTTACA
21031777 TGTAATCACA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 32 0.70
43 14 0.30
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (43 bp):
GGTCTTACACAAAATCATAATACAATGCCAATGTCCCAAACAC
Found at i:21031945 original size:9 final size:9
Alignment explanation
Indices: 21031931--21031957 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
21031921 TAAAAGTATA
21031931 TAATTCAAT
1 TAATTCAAT
21031940 TAATTCAAT
1 TAATTCAAT
21031949 TAATTCAAT
1 TAATTCAAT
21031958 AATAAATAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (9 bp):
TAATTCAAT
Found at i:21034121 original size:22 final size:22
Alignment explanation
Indices: 21034093--21034137 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
21034083 ATCAATAACG
21034093 ATTAATTTTTA-AGGTTCTTATA
1 ATTAATTTTTACA-GTTCTTATA
21034115 ATTAATTTTTACAGTTCTTATA
1 ATTAATTTTTACAGTTCTTATA
21034137 A
1 A
21034138 CTTAGTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (22 bp):
ATTAATTTTTACAGTTCTTATA
Found at i:21035576 original size:12 final size:12
Alignment explanation
Indices: 21035559--21035589 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
21035549 CAATTATTAA
21035559 ATATATATGTAT
1 ATATATATGTAT
*
21035571 ATATATATTTAT
1 ATATATATGTAT
21035583 ATATATA
1 ATATATA
21035590 GAACATATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (12 bp):
ATATATATGTAT
Found at i:21036091 original size:3 final size:3
Alignment explanation
Indices: 21036079--21036117 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
21036069 TGAATAAAGC
21036079 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
21036118 CGATAATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:21036231 original size:3 final size:3
Alignment explanation
Indices: 21036217--21036258 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
21036207 AAGTATATAC
21036217 TAA TACA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
21036259 GCATCAGACA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:21039025 original size:11 final size:11
Alignment explanation
Indices: 21039006--21039052 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
21038996 GGCCCGAGCT
21039006 AAAACAAACCC
1 AAAACAAACCC
*
21039017 AATACAAACCC
1 AAAACAAACCC
*
21039028 AAAACCAACCC
1 AAAACAAACCC
*
21039039 AAACCTAAACCC
1 AAAAC-AAACCC
21039051 AA
1 AA
21039053 CTATCAGCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 23 0.77
12 7 0.23
ACGTcount: A:0.57, C:0.38, G:0.00, T:0.04
Consensus pattern (11 bp):
AAAACAAACCC
Found at i:21040147 original size:3 final size:3
Alignment explanation
Indices: 21040139--21040244 Score: 51
Period size: 3 Copynumber: 35.3 Consensus size: 3
21040129 ATTTTCAAAT
* * *
21040139 TTA TTA TTA TTA TTA TTA TTA TCTGA TT- TAAA ATA TTA -TC TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-T-A TTA T-TA TTA TTA TTA TTA TTA
* * * *
21040185 TTA TT- TTCCA TGA TTA TTA TTA TTA ATA -TA TTT TTA TTC TTA TTA
1 TTA TTA TT--A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
21040230 ATA -CA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
21040245 CTTTTCTACT
Statistics
Matches: 77, Mismatches: 16, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
2 7 0.09
3 65 0.84
4 2 0.03
5 3 0.04
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:21040227 original size:20 final size:20
Alignment explanation
Indices: 21040179--21040244 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
21040169 AAATATTATC
* * *
21040179 TTATTATTATT-TTCCATGA
1 TTATTATTATTAATACATTA
* *
21040198 TTATTATTATTAATATATTT
1 TTATTATTATTAATACATTA
*
21040218 TTATTCTTATTAATACATTA
1 TTATTATTATTAATACATTA
21040238 TTATTAT
1 TTATTAT
21040245 CTTTTCTACT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
19 11 0.30
20 26 0.70
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.61
Consensus pattern (20 bp):
TTATTATTATTAATACATTA
Found at i:21040382 original size:3 final size:3
Alignment explanation
Indices: 21040376--21040501 Score: 90
Period size: 3 Copynumber: 43.3 Consensus size: 3
21040366 ACATCATCGC
*
21040376 TAT TAT TA- AAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
21040422 TACC T-T TA- TAT TAC TAT T-T GTAT TAA TA- TAT TAT TAGT T-T TAT
1 TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TA-T TAT TAT
* *
21040465 TAAT GTAT TGT TAT TTT TAT T-T TAT T-T TAT TAT TAT T
1 T-AT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
21040502 GTTTCATCCT
Statistics
Matches: 98, Mismatches: 11, Indels: 28
0.72 0.08 0.20
Matches are distributed among these distances:
2 15 0.15
3 74 0.76
4 8 0.08
5 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:21040482 original size:20 final size:20
Alignment explanation
Indices: 21040387--21040498 Score: 86
Period size: 20 Copynumber: 5.6 Consensus size: 20
21040377 ATTATTAAAT
*
21040387 TATATTATTATTATTATT-A
1 TATATTATTATTTTTATTAA
* *
21040406 T-TATTATTATTATTATTACCTT
1 TATATTATTATTTTTATTA---A
* *
21040428 TATATTACTATTTGTATTAA
1 TATATTATTATTTTTATTAA
*
21040448 TATATTATTAGTTTTATTAA
1 TATATTATTATTTTTATTAA
* * *
21040468 TGTATTGTTATTTTTATT-T
1 TATATTATTATTTTTATTAA
*
21040487 TATTTTATTATT
1 TATATTATTATT
21040499 ATTGTTTCAT
Statistics
Matches: 73, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
18 16 0.22
19 10 0.14
20 32 0.44
22 1 0.01
23 14 0.19
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (20 bp):
TATATTATTATTTTTATTAA
Found at i:21041691 original size:2 final size:2
Alignment explanation
Indices: 21041684--21041714 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
21041674 TTCTCTATCC
21041684 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21041715 AATTTATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21045070 original size:43 final size:43
Alignment explanation
Indices: 21044920--21045076 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 43
21044910 ACATTAGGTT
*
21044920 ATCAATATGTGATTACATGTAAGACCATGTCTGAGACATTGGC
1 ATCAATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
** * *
21044963 AT-TGTATTGAGATTACGTGTAAGACCATGTCTGGGACATTGGC
1 ATCAATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
** * * * * * *
21045006 ATCGTTAAT-CGATTTCGTGTAAGACCCTGTCTGGGATAGTGGC
1 ATCAAT-ATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
*
21045049 ATCAATATGTGATAACATGTAAGACCAT
1 ATCAATATGTGATTACATGTAAGACCAT
21045077 ATCTAGGATA
Statistics
Matches: 91, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 4 0.04
43 84 0.92
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
ATCAATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:21045762 original size:43 final size:43
Alignment explanation
Indices: 21045713--21045830 Score: 209
Period size: 43 Copynumber: 2.7 Consensus size: 43
21045703 GAAAAAAAAT
*
21045713 GCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
21045756 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
* *
21045799 ACCACTAAAGGTCAAGGCTTTTAGCGGCGTTT
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTT
21045831 TTTCTACAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
Found at i:21045936 original size:31 final size:31
Alignment explanation
Indices: 21045901--21045983 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
21045891 CTTCCTGCAT
** *
21045901 TAAAATCCAACCAAATCCAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * *
21045932 TAAAATGCAGCCAAAAACAACAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
21045963 TAAAAAATTCAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
21045984 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.60, C:0.20, G:0.02, T:0.17
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:21051860 original size:9 final size:9
Alignment explanation
Indices: 21051846--21051973 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
21051836 ATGTATTAGT
21051846 TAAGTTATG
1 TAAGTTATG
21051855 TAAGTTGTTATG
1 TAA---GTTATG
*
21051867 TACGTTATG
1 TAAGTTATG
*
21051876 TGAGTTATG
1 TAAGTTATG
*
21051885 TAAATTATG
1 TAAGTTATG
21051894 TAAGTTATG
1 TAAGTTATG
*
21051903 TGAGTTATG
1 TAAGTTATG
21051912 TAAGTTGTTATG
1 TAA---GTTATG
*
21051924 TAAATTATG
1 TAAGTTATG
*
21051933 TAAGTTATA
1 TAAGTTATG
*
21051942 TGAGTTATG
1 TAAGTTATG
21051951 TAAGTTATG
1 TAAGTTATG
* *
21051960 TAATTTATT
1 TAAGTTATG
21051969 TAAGT
1 TAAGT
21051974 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:21051973 original size:57 final size:57
Alignment explanation
Indices: 21051846--21051973 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
21051836 ATGTATTAGT
** * *
21051846 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
21051903 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
21051960 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
21051974 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:21052589 original size:241 final size:240
Alignment explanation
Indices: 21052093--21052765 Score: 1226
Period size: 241 Copynumber: 2.8 Consensus size: 240
21052083 TGAATATAGT
21052093 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
21052158 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
21052223 -GTTGGAGAGAA-GTCAGCTATTGTTGTAATTTTAATGGTCAAGCAAGCTACATGGTAATAAATA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
21052286 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
21052331 AATTTTTTAAGATTCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
21052396 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTT-AAAAA
*
21052461 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
130 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
21052526 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
195 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
* *
21052572 AATTTTTTAAGATTCATCATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGA
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
* *
21052637 TCGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTCAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
21052702 GGTTGGAGAGAAGGTCTGCTATATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGT-ATAAA
131 GGTTGGAGAGAAGGTCAGC--TATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
21052766 ATTAATTCAT
Statistics
Matches: 420, Mismatches: 10, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
238 123 0.29
239 6 0.01
240 33 0.08
241 220 0.52
242 38 0.09
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (240 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:21056063 original size:18 final size:19
Alignment explanation
Indices: 21056042--21056077 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21056032 TTTGAAATTC
21056042 TTCATCTCT-CAATTCTAT
1 TTCATCTCTGCAATTCTAT
*
21056060 TTCATCTTTGCAATTCTA
1 TTCATCTCTGCAATTCTA
21056078 CAAAAAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCATCTCTGCAATTCTAT
Found at i:21056713 original size:40 final size:41
Alignment explanation
Indices: 21056652--21056745 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 41
21056642 CAATTAAACA
** * *
21056652 TTTAGTGGCG--TTTTACAAAAGCGTCGCTAATTCTC-AGTT
1 TTTAGTGGCGTTTTTTATGAAAGCGCCACTAATTCTCTA-TT
21056691 TTT-GTGGCGTTTTTTATGAAAGCGCCACTAATTCTCTATT
1 TTTAGTGGCGTTTTTTATGAAAGCGCCACTAATTCTCTATT
21056731 TTTAGTGGCGTTTTT
1 TTTAGTGGCGTTTTT
21056746 GTAAAAACAC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 6 0.13
39 3 0.06
40 26 0.55
41 12 0.26
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (41 bp):
TTTAGTGGCGTTTTTTATGAAAGCGCCACTAATTCTCTATT
Found at i:21056762 original size:40 final size:39
Alignment explanation
Indices: 21056676--21056762 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 39
21056666 ACAAAAGCGT
* *
21056676 CGCTAATTCTCAGTTTTTGTGGCGTTTTTTATGAAAGCGC
1 CGCTAATTCTCAGTTTTTGTGGCGTTTTTTA-GAAAACAC
*
21056716 CACTAATTCTCTA-TTTTTAGTGGCGTTTTTGTA-AAAACAC
1 CGCTAATTCTC-AGTTTTT-GTGGCGTTTTT-TAGAAAACAC
21056756 CGCTAAT
1 CGCTAAT
21056763 GCCTCTGCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
40 26 0.65
41 12 0.30
42 2 0.05
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.41
Consensus pattern (39 bp):
CGCTAATTCTCAGTTTTTGTGGCGTTTTTTAGAAAACAC
Found at i:21056832 original size:25 final size:25
Alignment explanation
Indices: 21056798--21056848 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
21056788 ACTTCGTTTT
*
21056798 GCCTTATTTGAAATTTTTTTGTGGC
1 GCCTTATTTGAAATTTTTTTGCGGC
21056823 GCCTTATTTGAAATTTTTTTGCGGC
1 GCCTTATTTGAAATTTTTTTGCGGC
21056848 G
1 G
21056849 TTTTTTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.14, G:0.22, T:0.49
Consensus pattern (25 bp):
GCCTTATTTGAAATTTTTTTGCGGC
Found at i:21057287 original size:13 final size:13
Alignment explanation
Indices: 21057251--21057289 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
21057241 TGCATCTTAA
*
21057251 AATTAAAGTACTT
1 AATTAAAGTATTT
21057264 AATTAAAGTATTT
1 AATTAAAGTATTT
21057277 AATTAAAGTATTT
1 AATTAAAGTATTT
21057290 TAAATTATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (13 bp):
AATTAAAGTATTT
Found at i:21057868 original size:21 final size:21
Alignment explanation
Indices: 21057821--21057883 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
21057811 TATGGATTAG
* * *
21057821 TGTTTATGGTTTATGTTTTAA
1 TGTTTAAGGTTTAAGGTTTAA
** *
21057842 AATTTAGGGTTTAAGGTTTAA
1 TGTTTAAGGTTTAAGGTTTAA
*
21057863 TGTTTAAGATTTAAGGGTTTA
1 TGTTTAAGGTTTAA-GGTTTA
21057884 CAAAAAGCCA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
21 26 0.81
22 6 0.19
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (21 bp):
TGTTTAAGGTTTAAGGTTTAA
Found at i:21058242 original size:41 final size:41
Alignment explanation
Indices: 21058185--21058506 Score: 337
Period size: 41 Copynumber: 7.9 Consensus size: 41
21058175 CGTTTGGACC
* * *
21058185 AAAAACGCCGCTATTGATCAGTGTTTAGTGGCATTTTGGAT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * * *
21058226 AGAAACGCCACAATTGAGCAGTGTTTAGTGGCGTTTTGGAT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * *
21058267 AAAAACACCACAATTGATCAGTTTTTAGTGGCGTTTGGGAT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGAT
*
21058308 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTGGGAT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * * * *
21058349 TAAAACGCCGCTATTGATAAGCTTTTAGTGGC-ATTTGG-T
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * **
21058388 GAAAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTGGCC
1 -AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGAT
* * **
21058430 AAAAACGCCGCTATTGA-CTAGTTTTTAGCGGCGTGTTT-GCC
1 AAAAACGCCGCAATTGATC-AGTTTTTAGTGGCGT-TTTGGAT
* * * *
21058471 AAAAACGCCGCTATAGTTTAGTTTTTAGTGGCGTTT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTT
21058507 CAGACAAACG
Statistics
Matches: 246, Mismatches: 29, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.00
40 35 0.14
41 207 0.84
42 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (41 bp):
AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGAT
Found at i:21058476 original size:122 final size:121
Alignment explanation
Indices: 21058173--21058502 Score: 294
Period size: 122 Copynumber: 2.7 Consensus size: 121
21058163 AACTTTTTGC
* * * * * *
21058173 GGCGTTT-GGACCAAAAACGCCGCTATTGATCAGTGTTTAGTGGCATTTTG-GATAGAAACGCCA
1 GGCGTTTGGGA-CAAAAACGCCGCAATTGATCAGTTTTTAGCGGC-GTTTGCCATA-AAACGCCG
* * ** * * * * *
21058236 CAATTGAGCAG-TGTTTAGTGGCGTTTTGGAT-AAAAACACCACAATTGATCAGTTTTTAGT
63 CTATAGATAAGCT-TTTAGTGGC-ATTTGG-TGAAAAACGCCGCTATTGACCAGTTTTTAGT
* * **
21058296 GGCGTTTGGGATAAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTGGGATTAAAACGCCGCT
1 GGCGTTTGGGACAAAAACGCCGCAATTGATCAGTTTTTAGCGGCGTTTGCCA-TAAAACGCCGCT
*
21058361 ATTGATAAGCTTTTAGTGGCATTTGGTGAAAAACGCCGCTATTGACCAGTTTTTAGT
65 ATAGATAAGCTTTTAGTGGCATTTGGTGAAAAACGCCGCTATTGACCAGTTTTTAGT
* * *
21058418 GGCGTTTTGGCCAAAAACGCCGCTATTGA-CTAGTTTTTAGCGGCGTGTTTGCCA-AAAACGCCG
1 GGCGTTTGGGACAAAAACGCCGCAATTGATC-AGTTTTTAGCGGC--GTTTGCCATAAAACGCCG
* * *
21058481 CTATAGTTTAGTTTTTAGTGGC
63 CTATAGATAAGCTTTTAGTGGC
21058503 GTTTCAGACA
Statistics
Matches: 175, Mismatches: 24, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
121 2 0.01
122 98 0.56
123 63 0.36
124 12 0.07
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (121 bp):
GGCGTTTGGGACAAAAACGCCGCAATTGATCAGTTTTTAGCGGCGTTTGCCATAAAACGCCGCTA
TAGATAAGCTTTTAGTGGCATTTGGTGAAAAACGCCGCTATTGACCAGTTTTTAGT
Found at i:21060841 original size:27 final size:27
Alignment explanation
Indices: 21060795--21061030 Score: 220
Period size: 27 Copynumber: 8.7 Consensus size: 27
21060785 ATTACTAAAA
* ** ***
21060795 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCATTT
* * *
21060822 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
21060849 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
21060876 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
21060903 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
** * * ***
21060930 TACCCTTAATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
21060957 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
** * * *
21060984 TACCCTTAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
21061011 TACCCTCGATTTACTAAAAT
1 TACCCTCGATTTAC-AAAAT
21061031 ACCCCTATAG
Statistics
Matches: 173, Mismatches: 35, Indels: 1
0.83 0.17 0.00
Matches are distributed among these distances:
27 169 0.98
28 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:21060867 original size:54 final size:54
Alignment explanation
Indices: 21060795--21061030 Score: 274
Period size: 54 Copynumber: 4.4 Consensus size: 54
21060785 ATTACTAAAA
* ** ***
21060795 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
* * *
21060849 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
* * * * **
21060903 TACCCTCGATTTACAGAATTACTATTTTACCCTTAATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
* * * * **
21060957 TACCCTTGATTTACAGAATTACCATTTTACCCTTAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
21061011 TACCCTCGATTTACTAAAAT
1 TACCCTCGATTTAC-AAAAT
21061031 ACCCCTATAG
Statistics
Matches: 157, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 153 0.97
55 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
Found at i:21060915 original size:81 final size:81
Alignment explanation
Indices: 21060795--21061030 Score: 274
Period size: 81 Copynumber: 2.9 Consensus size: 81
21060785 ATTACTAAAA
* ** *** **
21060795 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACTATTTTACCCTTGATT
21060860 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * *
21060876 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTTAATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACTATTTTACCCTTGATT
* * ***
21060941 TATAGAATTATTGTTT
66 TACAAAATTACCATTT
* * * * *
21060957 TACCCTTGATTTACAGAATTACCATTTTACCCTTAATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACTATTTTACCCTTGATT
21061022 TACTAAAAT
66 TAC-AAAAT
21061031 ACCCCTATAG
Statistics
Matches: 128, Mismatches: 26, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
81 124 0.97
82 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACTATTTTACCCTTGATT
TACAAAATTACCATTT
Found at i:21061071 original size:27 final size:26
Alignment explanation
Indices: 21061027--21061125 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
21061017 CGATTTACTA
*
21061027 AAATACCCCTATAGGGTAGAATCACCG
1 AAATACCCCTGTAGGGTAGAAT-ACCG
* * *
21061054 AAATACCCTTGTATGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAG-AATACCG
*
21061081 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAA-TACCG
* *
21061108 AGATACCCTTGTAGGGTA
1 AAATACCCCTGTAGGGTA
21061126 AAATTATCAT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.03
27 55 0.92
28 3 0.05
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (26 bp):
AAATACCCCTGTAGGGTAGAATACCG
Found at i:21061114 original size:54 final size:53
Alignment explanation
Indices: 21061022--21061129 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 53
21061012 ACCCTCGATT
* *
21061022 TACTAAAATACCCCTATAGGGTAGAATCACCGAAATACCCTTGTATGGTAGAAA
1 TACTAAAATACCCCTATAAGGTAGAATCACCGAAATACCCTTGTAGGGTA-AAA
* * * *
21061076 TACTGAAATACCCCTGTAAGGTAGAATTACCGAGATACCCTTGTAGGGTAAAA
1 TACTAAAATACCCCTATAAGGTAGAATCACCGAAATACCCTTGTAGGGTAAAA
21061129 T
1 T
21061130 TATCATTTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (53 bp):
TACTAAAATACCCCTATAAGGTAGAATCACCGAAATACCCTTGTAGGGTAAAA
Found at i:21061508 original size:27 final size:26
Alignment explanation
Indices: 21061470--21061529 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
21061460 CCATATATAT
* *
21061470 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATTTGTTCTGGTGACCTAGCCACA
* * *
21061496 ATATTTGTATCTGGTGACTTCGTCACA
1 ATATTTGT-TCTGGTGACCTAGCCACA
21061523 ATATTTG
1 ATATTTG
21061530 GCAGCTTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (26 bp):
ATATTTGTTCTGGTGACCTAGCCACA
Found at i:21061663 original size:6 final size:6
Alignment explanation
Indices: 21061654--21061741 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
21061644 TTGCATTCAC
* *
21061654 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
21061704 ATTCTA ATTCTG ATTCTT ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
21061742 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:21061685 original size:25 final size:25
Alignment explanation
Indices: 21061657--21061720 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
21061647 CATTCACATT
*
21061657 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
21061682 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
*
21061707 CTAATTCTGATTCT
1 CTGATTCTGATTCT
21061721 TATTTTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:21062719 original size:163 final size:163
Alignment explanation
Indices: 21062433--21062746 Score: 427
Period size: 163 Copynumber: 1.9 Consensus size: 163
21062423 TGATGTTTGT
* * *
21062433 CATTCATTTGGTGTCTGCTCAAAAACATTGTCTTTAGATGGTCATCATGAGATCAGTTCTTTAGA
1 CATTCATTTGGTGTCCGCTCAAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAGA
* **
21062498 TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTTAGAGTCTTGCCAC
66 TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTCAGAGTCTCACCAC
*
21062563 GAAGACATCCTTTTAACAGAGTTTGCCATAAGG
131 AAAGACATCCTTTTAACAGAGTTTGCCATAAGG
** * * *
21062596 CATTCATTTGGTGTCCGC-CTAAAGGCGTTGTCTTCAGTTGGTCATCATGAGATCCGTTCTTCAG
1 CATTCATTTGGTGTCCGCTC-AAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAG
** * *
21062660 ATTCTGCCACGAAGGCATT-CTTTTCCAAAGATAGCTACAAA-AGTTTTTCTTTCAGAGTCTCAC
65 ATTCCACCACGAAGGCATTCCTTTT-CAAAGATAGCTACAAAGA-CTTTCCTTTCAGAGTCTCAC
*
21062723 CACAAAGACATCCTTTTAATAGAG
128 CACAAAGACATCCTTTTAACAGAG
21062747 ATAGTCACAA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
162 7 0.05
163 124 0.95
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (163 bp):
CATTCATTTGGTGTCCGCTCAAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAGA
TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTCAGAGTCTCACCAC
AAAGACATCCTTTTAACAGAGTTTGCCATAAGG
Found at i:21062865 original size:115 final size:114
Alignment explanation
Indices: 21062722--21063096 Score: 382
Period size: 115 Copynumber: 3.3 Consensus size: 114
21062712 CAGAGTCTCA
*
21062722 CCACAAAGACATCCTTTTAATAGAGATAGTCACAAGGCATTCCTTTAACTAAGATAGCCACAAAG
1 CCACAAAGACATCCTTTTAATAGAGATAGCCACAAGGCA-TCCTTTAACTAAGATAGCCACAAAG
* * * * *
21062787 GCATCCTCTTAATAGAGATAACCACAAAGGCATCCTCTTAACAGAGATAG
65 GCATCCTTTTAACAGAGATAGCCATAAAGACATCCTCTTAACAGAGATAG
* * * * * *
21062837 CCACAAAGGCATCCTTTTAATAGAGATAGCCATAAAGGCATCCTTT--TTCAGATATCACCATAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCA-CAAGGCATCCTTTAACTAAGATA--GCCACAA
* * * * * *
21062900 AGACTTCCTTTTAACAGAGATCGTCATAAAGACTTCCTTTTAACAGAGATAG
63 AGGCATCCTTTTAACAGAGATAGCCATAAAGACATCCTCTTAACAGAGATAG
* * *
21062952 CCACAAAGACATCCCTTTAAT-GAGATAGCCACAAAGTCATCCTTTTAACTGAGATAGCCACAAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCAC-AAGGCATCC-TTTAACTAAGATAGCCACAAA
* ** * * **
21063016 TGCATATTTTTAACAGAGATAGCCATAAAGACATCCT-TT-TCAGATATCT
64 GGCATCCTTTTAACAGAGATAGCCATAAAGACATCCTCTTAACAGAGATAG
* * *
21063065 CCACATAGACATCTTTTTAACAGAGATAGCCA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCA
21063097 TAAAGGTGTC
Statistics
Matches: 210, Mismatches: 42, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
113 29 0.14
114 30 0.14
115 139 0.66
116 6 0.03
117 6 0.03
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (114 bp):
CCACAAAGACATCCTTTTAATAGAGATAGCCACAAGGCATCCTTTAACTAAGATAGCCACAAAGG
CATCCTTTTAACAGAGATAGCCATAAAGACATCCTCTTAACAGAGATAG
Found at i:21063111 original size:29 final size:29
Alignment explanation
Indices: 21062722--21063146 Score: 357
Period size: 29 Copynumber: 14.8 Consensus size: 29
21062712 CAGAGTCTCA
* *
21062722 CCACAAAGACATCCTTTTAATAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
*
21062751 TCAC-AAGGCATTCC-TTTAACTA-AGATAG
1 CCACAAAGGCA-TCCTTTTAAC-AGAGATAG
* * *
21062779 CCACAAAGGCATCCTCTTAATAGAGATAA
1 CCACAAAGGCATCCTTTTAACAGAGATAG
*
21062808 CCACAAAGGCATCCTCTTAACAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
*
21062837 CCACAAAGGCATCCTTTTAATAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * *
21062866 CCATAAAGGCATCCTTTT-TCAGATATCA-
1 CCACAAAGGCATCCTTTTAACAGAGAT-AG
* * * *
21062894 CCATAAAGACTTCCTTTTAACAGAGATCG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * * *
21062923 TCATAAAGACTTCCTTTTAACAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * *
21062952 CCACAAAGACATCCCTTTAA-TGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* *
21062980 CCACAAAGTCATCCTTTTAACTGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* **
21063009 CCACAAATGCATATTTTTAACAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * * **
21063038 CCATAAAGACATCCTTTT--CAGATATCT
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * *
21063065 CCACATAGACATCTTTTTAACAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* ** * * *
21063094 CCATAAAGGTGTCCTTTT-TCAAAAATCA-
1 CCACAAAGGCATCCTTTTAACAGAGAT-AG
*
21063122 CCACAAAAGGCTTCCTTTTAACAGA
1 CCAC-AAAGGCATCCTTTTAACAGA
21063147 AATTGCCATA
Statistics
Matches: 320, Mismatches: 62, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
27 21 0.07
28 77 0.24
29 219 0.68
30 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (29 bp):
CCACAAAGGCATCCTTTTAACAGAGATAG
Found at i:21063112 original size:86 final size:85
Alignment explanation
Indices: 21062709--21063111 Score: 393
Period size: 86 Copynumber: 4.7 Consensus size: 85
21062699 AAAGTTTTTC
* * *
21062709 TTTCAGAGTCTCACCACAAAGACATCCTTTTAATAGAGATAGTCAC-AAGGCATTCC-TTTAACT
1 TTTCAGA-TATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCA-TCCTTTTAAC-
* *
21062772 A-AGATAGCCACAAAGGCATCCT
63 AGAGATAGCCATAAAGACATCCT
* * * * *
21062794 CTTAAT-AGAGATAACCACAAAGGCATCCTCTTAACAGAGATAGCCACAAAGGCATCCTTTTAAT
1 -TT--TCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAAC
*
21062858 AGAGATAGCCATAAAGGCATCCTT
63 AGAGATAGCCATAAAGACATCC-T
* * * * * * *
21062882 TTTCAGATATCACCATAAAGACTTCCTTTTAACAGAGATCGTCATAAAGACTTCCTTTTAACAGA
1 TTTCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGA
* *
21062947 GATAGCCACAAAGACATCCC
66 GATAGCCATAAAGACATCCT
* * * * * **
21062967 TTTAATGAGAT-AGCCACAAAGTCATCCTTTTAACTGAGATAGCCACAAATGCATATTTTTAACA
1 TTTCA-GATATCA-CCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACA
21063031 GAGATAGCCATAAAGACATCCT
64 GAGATAGCCATAAAGACATCCT
* * * * **
21063053 TTTCAGATATCTCCACATAGACATCTTTTTAACAGAGATAGCCATAAAGGTGTCCTTTT
1 TTTCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTT
21063112 TCAAAAATCA
Statistics
Matches: 254, Mismatches: 53, Indels: 21
0.77 0.16 0.06
Matches are distributed among these distances:
85 47 0.19
86 170 0.67
87 35 0.14
88 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (85 bp):
TTTCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGA
GATAGCCATAAAGACATCCT
Found at i:21065273 original size:42 final size:42
Alignment explanation
Indices: 21065157--21065305 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 42
21065147 AAACCAATGT
* * *
21065157 CATA-TCCCAGATATGGTCTTACATGGAATCTTATATTGATGC
1 CATAGTCCCAGATATGGTCTTACA-CGAATCTCATATCGATGC
* * *
21065199 CAATAG-CCTAGCTATGGTCTTACACGATTCTCATATCGATGC
1 C-ATAGTCCCAGATATGGTCTTACACGAATCTCATATCGATGC
* *
21065241 CAT-GTCCCAGAAATGGTCTTACACGAAATCTCATAACGATGC
1 CATAGTCCCAGATATGGTCTTACACG-AATCTCATATCGATGC
* * *
21065283 CATA-TCTCAAATATGTTCTTACA
1 CATAGTCCCAGATATGGTCTTACA
21065306 TGTAAACTCA
Statistics
Matches: 87, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
40 1 0.01
41 19 0.22
42 48 0.55
43 19 0.22
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
CATAGTCCCAGATATGGTCTTACACGAATCTCATATCGATGC
Found at i:21075155 original size:21 final size:21
Alignment explanation
Indices: 21075131--21075180 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
21075121 ATAACTCCCG
*
21075131 AACCCTAAAATATAAACTCTA
1 AACCCTAAAACATAAACTCTA
* *
21075152 AACCATAAACCATAAACTCTA
1 AACCCTAAAACATAAACTCTA
*
21075173 AGCCCTAA
1 AACCCTAA
21075181 GCCCTAAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.28, G:0.02, T:0.20
Consensus pattern (21 bp):
AACCCTAAAACATAAACTCTA
Found at i:21075159 original size:14 final size:14
Alignment explanation
Indices: 21075157--21075225 Score: 50
Period size: 14 Copynumber: 4.9 Consensus size: 14
21075147 CTCTAAACCA
21075157 TAAACCATAAACTC
1 TAAACCATAAACTC
* * * *
21075171 TAAGCCCTAAGCCC
1 TAAACCATAAACTC
*
21075185 TAAACCATAAAACAC
1 TAAACCAT-AAACTC
* * *
21075200 TAGACCCTAAACTA
1 TAAACCATAAACTC
21075214 T-AACCATAAACT
1 TAAACCATAAACT
21075226 ATAATGATAA
Statistics
Matches: 40, Mismatches: 14, Indels: 3
0.70 0.25 0.05
Matches are distributed among these distances:
13 9 0.22
14 21 0.52
15 10 0.25
ACGTcount: A:0.46, C:0.30, G:0.04, T:0.19
Consensus pattern (14 bp):
TAAACCATAAACTC
Found at i:21075167 original size:28 final size:28
Alignment explanation
Indices: 21075131--21075229 Score: 83
Period size: 28 Copynumber: 3.5 Consensus size: 28
21075121 ATAACTCCCG
* *
21075131 AACCCTAAAATATAAACTCTAAACCATA
1 AACCATAAAATATAAACCCTAAACCATA
* * * * *
21075159 AACCATAAACTCTAAGCCCTAAGCCCTA
1 AACCATAAAATATAAACCCTAAACCATA
* * *
21075187 AACCATAAAACACTAGACCCTAAACTAT-
1 AACCATAAAATA-TAAACCCTAAACCATA
*
21075215 AACCATAAACTATAA
1 AACCATAAAATATAA
21075230 TGATAATTTT
Statistics
Matches: 52, Mismatches: 18, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
27 2 0.04
28 40 0.77
29 10 0.19
ACGTcount: A:0.49, C:0.28, G:0.03, T:0.19
Consensus pattern (28 bp):
AACCATAAAATATAAACCCTAAACCATA
Found at i:21076691 original size:23 final size:23
Alignment explanation
Indices: 21076660--21076703 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
21076650 TAAATATGTA
*
21076660 TAAATCTAAAAAATTCTTAAAAT
1 TAAACCTAAAAAATTCTTAAAAT
*
21076683 TAAACCTAAAAAATTTTTAAA
1 TAAACCTAAAAAATTCTTAAA
21076704 CTAACATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (23 bp):
TAAACCTAAAAAATTCTTAAAAT
Found at i:21080125 original size:23 final size:23
Alignment explanation
Indices: 21080043--21080129 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
21080033 CCTGATCAGT
*
21080043 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
21080065 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
21080085 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
21080108 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
21080130 TCAGTAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:21081613 original size:16 final size:17
Alignment explanation
Indices: 21081578--21081613 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
21081568 CCTAATTCTC
21081578 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
21081594 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
21081609 CCTTC
1 CCTTC
21081614 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:21082370 original size:60 final size:60
Alignment explanation
Indices: 21082276--21082401 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 60
21082266 ATCCTAAACA
*** * *
21082276 TAAAAAAATCAACAAATTTAGCCCCCATTGTTTACAAAA-TGTCATTTTAGT-TCTAATTC
1 TAAAAAAATCAACAAATTTAGCCCCCAGCATTTACAAAAGTGTCAATTTAGTCT-TAACTC
* *
21082335 TAAAAAAAGTCAATAAATTTAGCCCTCAGCATTTACAAAAGTTGTCAATTTAGTCTTAACTC
1 TAAAAAAA-TCAACAAATTTAGCCCCCAGCATTTACAAAAG-TGTCAATTTAGTCTTAACTC
21082397 TAAAA
1 TAAAA
21082402 TTAGAAAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
59 8 0.14
60 26 0.46
62 21 0.38
63 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.33
Consensus pattern (60 bp):
TAAAAAAATCAACAAATTTAGCCCCCAGCATTTACAAAAGTGTCAATTTAGTCTTAACTC
Found at i:21084667 original size:12 final size:12
Alignment explanation
Indices: 21084650--21084676 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
21084640 TTTTTATTAT
21084650 CAACATTCGGAA
1 CAACATTCGGAA
21084662 CAACATTCGGAA
1 CAACATTCGGAA
21084674 CAA
1 CAA
21084677 AAAATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.26, G:0.15, T:0.15
Consensus pattern (12 bp):
CAACATTCGGAA
Found at i:21090027 original size:41 final size:41
Alignment explanation
Indices: 21089926--21090142 Score: 264
Period size: 41 Copynumber: 5.4 Consensus size: 41
21089916 GTTTTATCAA
** * *
21089926 AAAACGCCGCTAAAAA--AGAGCAACAGTGGCG-TTTTAGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
21089964 AAAAAACGCCACTAAAAA-CAGAGCATTAGCGGTGCTTTTGGT
1 --AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
21090006 AAAATGCCGCTAAAAACCAGAGTATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
21090047 AAAACGCAGCTAAAAACCAGAGCACTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * *
21090088 AAAACGCCGCTAAAAACCTGAGCATTAGCAGCGCTTTTAGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
21090129 -AAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
21090143 GTCATATAAC
Statistics
Matches: 155, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
40 43 0.28
41 106 0.68
42 6 0.04
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:21090342 original size:21 final size:21
Alignment explanation
Indices: 21090313--21090395 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 21
21090303 TAGTTTAAGG
*
21090313 TTTATGGTTTAAGATATATGA
1 TTTAGGGTTTAAGATATATGA
*
21090334 TTTAGGGTTTAAGTAGGTTTATGA
1 TTTAGGGTTTAAG-A--TATATGA
* *
21090358 GTTAACTATGGTTTAAGATATATGG
1 -TT---TAGGGTTTAAGATATATGA
21090383 TTTAGGGTTTAAG
1 TTTAGGGTTTAAG
21090396 GTTTAGGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
21 22 0.45
22 1 0.02
24 8 0.16
25 7 0.14
27 1 0.02
28 10 0.20
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (21 bp):
TTTAGGGTTTAAGATATATGA
Found at i:21090373 original size:49 final size:46
Alignment explanation
Indices: 21090315--21090411 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 46
21090305 GTTTAAGGTT
*
21090315 TATGGTTTAAGATATATGATTTAGGGTTTAAGTAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTT-A--AGGTTTAGGAGTTAAC
*
21090364 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
21090410 TA
1 TA
21090412 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 17 0.37
48 1 0.02
49 28 0.61
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.42
Consensus pattern (46 bp):
TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:21091030 original size:17 final size:17
Alignment explanation
Indices: 21091008--21091046 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
21090998 GATGGTTTAT
*
21091008 GTTTACTATAATTTAGG
1 GTTTACTATAATTAAGG
21091025 GTTTACTATAATTAAGG
1 GTTTACTATAATTAAGG
21091042 GTTTA
1 GTTTA
21091047 AGGTTTAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.05, G:0.18, T:0.46
Consensus pattern (17 bp):
GTTTACTATAATTAAGG
Found at i:21094758 original size:43 final size:43
Alignment explanation
Indices: 21094697--21095009 Score: 301
Period size: 43 Copynumber: 7.3 Consensus size: 43
21094687 TTTCATGACC
* *
21094697 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGGCT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
* * **
21094740 TTTAGCGACGTTTGTGGG-AAAGCGTCGTTAAAGGTCGTGACTT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGAC-T
* * * ** *
21094783 TTTAGTGGCATTTGTGGGAAAAGCACAC--TAAAGGTTGCGATT
1 TTTAGCGGCGTTTGTGGGAAAAGCGC-CGTTAAAGGTCACGACT
* * * *
21094825 TTTAGTGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGC-
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCA-CGACT
* * *
21094868 TTTAGCGGCGTTTGTGGGAAAAGCGTCGTTAAAGGTCGCGATT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
* * * * *
21094911 TTTAGCGGCGTTTGTGAGAAAAGTGCCGTTAAAGGTCATGGCC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
* * * * * *
21094954 TTTAGCGGCGTTTGCGGGAAAAGCACCGCTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
21094997 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
21095010 TTTTAAAATA
Statistics
Matches: 219, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.00
42 43 0.20
43 168 0.77
44 6 0.03
45 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
Found at i:21094925 original size:128 final size:128
Alignment explanation
Indices: 21094697--21094933 Score: 361
Period size: 128 Copynumber: 1.9 Consensus size: 128
21094687 TTTCATGACC
*
21094697 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGGCTTTTAGCGACGTTTGTGGGAAAG
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCACGGCTTTTAGCGACGTTTGTGGGAAAG
* * *
21094762 CGTCGTTAAAGGTCGTGACTTTTTAGTGGCATTTGTGGGAAAAGCACACTAAAGGTTGCGATT
66 CGTCGTTAAAGGTCGCGACTTTTTAGCGGCATTTGTGAGAAAAGCACACTAAAGGTTGCGATT
* * * *
21094825 TTTAGTGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGC-TTTAGCGGCGTTTGTGGGAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCA-CGGCTTTTAGCGACGTTTGTGGG-AA
*
21094889 AGCGTCGTTAAAGGTCGCGA-TTTTTAGCGGCGTTTGTGAGAAAAG
64 AGCGTCGTTAAAGGTCGCGACTTTTTAGCGGCATTTGTGAGAAAAG
21094934 TGCCGTTAAA
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
128 74 0.76
129 24 0.24
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.29
Consensus pattern (128 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCACGGCTTTTAGCGACGTTTGTGGGAAAG
CGTCGTTAAAGGTCGCGACTTTTTAGCGGCATTTGTGAGAAAAGCACACTAAAGGTTGCGATT
Found at i:21094987 original size:129 final size:128
Alignment explanation
Indices: 21094689--21095009 Score: 382
Period size: 129 Copynumber: 2.5 Consensus size: 128
21094679 ATTTAAAATT
* * *
21094689 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCA-CGGCTTTTAGCGACGTTT
1 TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGGC-TTTAGCGGCGTTT
* * *
21094753 GTGGGAAAGCGTCGTTAAAGGTCGTGACTTTTTAGTGGCATTTGTGGGAAAAGCACACTAAAGG
65 GTGGGAAAGCGTCGTTAAAGGTCGCGACTTTTTAGCGGCATTTGTGAGAAAAGCACACTAAAGG
** * * *
21094817 T--TGCGATTTTTAGTGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTT
1 TCATG-G-CCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGGCTTTAGCGGCGTT
* **
21094880 TGTGGGAAAAGCGTCGTTAAAGGTCGCGA-TTTTTAGCGGCGTTTGTGAGAAAAGTGC-CGTTAA
64 TGTGGG-AAAGCGTCGTTAAAGGTCGCGACTTTTTAGCGGCATTTGTGAGAAAA--GCACACTAA
21094943 AGG
126 AGG
* * * **
21094946 TCATGGCCTTTAGCGGCGTTTGCGGGAAAAGCACCGCTAAAGGCCATGACCTTTAGCGGCGTTT
1 TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGGCTTTAGCGGCGTTT
21095010 TTTTAAAATA
Statistics
Matches: 161, Mismatches: 24, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
126 2 0.01
128 74 0.46
129 80 0.50
130 3 0.02
131 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (128 bp):
TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGGCTTTAGCGGCGTTTG
TGGGAAAGCGTCGTTAAAGGTCGCGACTTTTTAGCGGCATTTGTGAGAAAAGCACACTAAAGG
Found at i:21095001 original size:86 final size:86
Alignment explanation
Indices: 21094689--21095009 Score: 376
Period size: 86 Copynumber: 3.7 Consensus size: 86
21094679 ATTTAAAATT
* * *
21094689 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGGCTTTTAGCGACGTTTG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACTTTTAGCGGCGTTTG
* *
21094754 TG-GGAAAGCGTCGTTAAAGG
66 TGAGAAAAGCGCCGTTAAAGG
* * * * * ** * *
21094774 TCGTGACTTTTTAGTGGCATTTGTGGGAAAAGCA-CACTAAAGGTTGCGATTTTTAGTGGCGTTT
1 TCATGAC-CTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACTTTTAGCGGCGTTT
21094838 GTGAGAAAAGCGCCGTTAAAGG
65 GTGAGAAAAGCGCCGTTAAAGG
** ** * * *
21094860 TCATGGGCTTTAGCGGCGTTTGTGGGAAAAGCGTCGTTAAAGGTCGCGATTTTTAGCGGCGTTTG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACTTTTAGCGGCGTTTG
*
21094925 TGAGAAAAGTGCCGTTAAAGG
66 TGAGAAAAGCGCCGTTAAAGG
* * * * *
21094946 TCATGGCCTTTAGCGGCGTTTGCGGGAAAAGCACCGCTAAAGGCCATGACCTTTAGCGGCGTTT
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACTTTTAGCGGCGTTT
21095010 TTTTAAAATA
Statistics
Matches: 197, Mismatches: 36, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
85 54 0.27
86 143 0.73
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (86 bp):
TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACTTTTAGCGGCGTTTG
TGAGAAAAGCGCCGTTAAAGG
Found at i:21095719 original size:20 final size:19
Alignment explanation
Indices: 21095696--21095759 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
21095686 AAAAGTTATA
*
21095696 AAAATTAAAAAAATCAAAAT
1 AAAATTAAAAAAAT-AATAT
*
21095716 AAAAAATAAAAAAAT-ATAT
1 -AAAATTAAAAAAATAATAT
*
21095735 ACAAATTCAAAAAATAATAT
1 A-AAATTAAAAAAATAATAT
21095755 AAAAT
1 AAAAT
21095760 ATATATAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
18 1 0.03
19 18 0.49
20 5 0.14
21 13 0.35
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATTAAAAAAATAATAT
Found at i:21097971 original size:22 final size:23
Alignment explanation
Indices: 21097945--21097989 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
21097935 TTTATTTCAT
*
21097945 TAATAATTAATAA-TGTATAAGA
1 TAATAATTAATAATTGAATAAGA
*
21097967 TAATAATTCATAATTGAATAAGA
1 TAATAATTAATAATTGAATAAGA
21097990 AAATGAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (23 bp):
TAATAATTAATAATTGAATAAGA
Found at i:21099817 original size:40 final size:39
Alignment explanation
Indices: 21099730--21099819 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 39
21099720 TAAAAATATA
* *
21099730 TTTAATACAATAAAATATTTATTATATTTATTTGTGTTT
1 TTTAATATAATAAAATATTTATTATATTTATTAGTGTTT
21099769 TTTAAATATAATAAAATATTTATTATATTTATGGTAGTG-TT
1 TTT-AATATAATAAAATATTTATTATATTTAT--TAGTGTTT
21099810 TTTAATATAA
1 TTTAATATAA
21099820 ATATTTTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
39 3 0.07
40 34 0.74
41 5 0.11
42 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (39 bp):
TTTAATATAATAAAATATTTATTATATTTATTAGTGTTT
Found at i:21106427 original size:9 final size:8
Alignment explanation
Indices: 21106406--21106503 Score: 54
Period size: 9 Copynumber: 11.1 Consensus size: 8
21106396 AAAAAATTGA
*
21106406 TATAAATT
1 TATAAAAT
21106414 TATAAAAGT
1 TATAAAA-T
*
21106423 TATAAAAA
1 TATAAAAT
* *
21106431 AAT-AACT
1 TATAAAAT
21106438 TATAAATAT
1 TATAAA-AT
21106447 TATAAAAT
1 TATAAAAT
*
21106455 TCTAATAAGT
1 TATAA-AA-T
21106465 TATAAAATTT
1 TATAAAA--T
21106475 TATAAAAAT
1 TAT-AAAAT
21106484 TAATAAAATT
1 T-ATAAAA-T
21106494 TATTAAAAT
1 TA-TAAAAT
21106503 T
1 T
21106504 TTTATAAAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
7 4 0.06
8 16 0.23
9 28 0.40
10 18 0.26
11 4 0.06
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (8 bp):
TATAAAAT
Found at i:21106467 original size:27 final size:27
Alignment explanation
Indices: 21106422--21106489 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
21106412 TTTATAAAAG
21106422 TTATAAAAA--AATAACTTAT-AAATA
1 TTATAAAAATTAATAACTTATAAAATA
* * *
21106446 TTATAAAATTCTAATAAGTTATAAAATT
1 TTATAAAAAT-TAATAACTTATAAAATA
21106474 TTATAAAAATTAATAA
1 TTATAAAAATTAATAA
21106490 AATTTATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 8 0.22
27 15 0.42
28 13 0.36
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (27 bp):
TTATAAAAATTAATAACTTATAAAATA
Found at i:21106491 original size:20 final size:19
Alignment explanation
Indices: 21106437--21106571 Score: 71
Period size: 18 Copynumber: 7.0 Consensus size: 19
21106427 AAAAAATAAC
*
21106437 TTATAAATATTATAAAATT
1 TTATAAAAATTATAAAATT
* * *
21106456 CTA-ATAAGTTATAAAATT
1 TTATAAAAATTATAAAATT
21106474 TTATAAAAATTAATAAAA-T
1 TTATAAAAATT-ATAAAATT
* *
21106493 TTATTAAAATTTTTATAAAAAT
1 TTA-TAAAA--ATTATAAAATT
* * * **
21106515 GTATAAGAATTCTTAAAAAA
1 TTATAAAAATT-ATAAAATT
*
21106535 TTATAAACATT-TAAAATT
1 TTATAAAAATTATAAAATT
*
21106553 TTTTAAAAA-TATTAAAATT
1 TTATAAAAATTA-TAAAATT
21106572 GATATAAACT
Statistics
Matches: 87, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
17 1 0.01
18 26 0.30
19 20 0.23
20 25 0.29
21 10 0.11
22 5 0.06
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
TTATAAAAATTATAAAATT
Found at i:21106501 original size:19 final size:20
Alignment explanation
Indices: 21106437--21106503 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 20
21106427 AAAAAATAAC
*
21106437 TTATAAATATT-ATAAAATT
1 TTATAAAAATTAATAAAATT
* * *
21106456 CTA-ATAAGTT-ATAAAATT
1 TTATAAAAATTAATAAAATT
21106474 TTATAAAAATTAATAAAA-T
1 TTATAAAAATTAATAAAATT
*
21106493 TTATTAAAATT
1 TTATAAAAATT
21106504 TTTATAAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
18 14 0.37
19 18 0.47
20 6 0.16
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (20 bp):
TTATAAAAATTAATAAAATT
Found at i:21106531 original size:31 final size:30
Alignment explanation
Indices: 21106467--21106560 Score: 88
Period size: 31 Copynumber: 3.2 Consensus size: 30
21106457 TAATAAGTTA
21106467 TAAAATTTTATAAAAATTAATAAAATTTAT
1 TAAAATTTTATAAAAATTAATAAAATTTAT
*
21106497 TAAAATTTTTATAAAAATGT-ATAAGAA-TTCT
1 TAAAA-TTTTATAAAAAT-TAATAA-AATTTAT
** * *
21106528 TAAAAAATTATAAACATT--TAAAATTTTT
1 TAAAATTTTATAAAAATTAATAAAATTTAT
21106556 TAAAA
1 TAAAA
21106561 ATATTAAAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
27 2 0.04
28 11 0.20
29 1 0.02
30 14 0.25
31 24 0.44
32 3 0.05
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (30 bp):
TAAAATTTTATAAAAATTAATAAAATTTAT
Found at i:21106535 original size:21 final size:19
Alignment explanation
Indices: 21106483--21106541 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 19
21106473 TTTATAAAAA
*
21106483 TTAATAAAATTTATTAAAATTT
1 TTAA-AAAA-TTA-TAAAATTC
21106505 TTATAAAAATGTATAAGAATTC
1 TTA-AAAAAT-TATAA-AATTC
21106527 TTAAAAAATTATAAA
1 TTAAAAAATTATAAA
21106542 CATTTAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
19 1 0.03
20 5 0.15
21 10 0.30
22 16 0.48
23 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (19 bp):
TTAAAAAATTATAAAATTC
Found at i:21106693 original size:11 final size:10
Alignment explanation
Indices: 21106669--21106759 Score: 55
Period size: 10 Copynumber: 9.2 Consensus size: 10
21106659 AAATATATTT
*
21106669 AAAATTCTATA
1 AAAATTATA-A
21106680 AAAATTAATAA
1 AAAATT-ATAA
*
21106691 AAACTTATAA
1 AAAATTATAA
*
21106701 ATAA-TAT-A
1 AAAATTATAA
*
21106709 AAAATTTTAA
1 AAAATTATAA
* *
21106719 TAAAGTATAA
1 AAAATTATAA
*
21106729 AAAATTGT-A
1 AAAATTATAA
21106738 AAAATTATTAA
1 AAAATTA-TAA
*
21106749 AAGA-TATAA
1 AAAATTATAA
21106758 AA
1 AA
21106760 TTTTTAATTT
Statistics
Matches: 61, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
8 4 0.07
9 17 0.28
10 22 0.36
11 16 0.26
12 2 0.03
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (10 bp):
AAAATTATAA
Found at i:21106699 original size:20 final size:18
Alignment explanation
Indices: 21106375--21106759 Score: 110
Period size: 20 Copynumber: 20.3 Consensus size: 18
21106365 AATAAATGAT
*
21106375 TAAAAATCACTAAAAATTA
1 TAAAAATTA-TAAAAATTA
*
21106394 TTAAAAAATTGATATAAATTTA
1 -T-AAAAATT-ATA-AAAATTA
*
21106416 TAAAAGTTATAAAAA--A
1 TAAAAATTATAAAAATTA
* * *
21106432 -ATAACTTATAAATATTA
1 TAAAAATTATAAAAATTA
* *
21106449 T-AAAATTCTAATAAGTTA
1 TAAAAATTATAA-AAATTA
*
21106467 TAAAATTTTATAAAAATTAA
1 TAAAA-ATTATAAAAATT-A
* *
21106487 TAAAATTTATTAAAATTTTTA
1 TAAAAATTA-TAAAA--ATTA
* *
21106508 TAAAAATGTATAAGAATTCT
1 TAAAAAT-TATAAAAATT-A
*
21106528 TAAAAAATTATAAACATT-
1 T-AAAAATTATAAAAATTA
* *
21106546 TAAAATTTTTTAAAAA-TA
1 TAAAA-ATTATAAAAATTA
* *
21106564 TTAAAATTGATATAAACTTA
1 TAAAAATT-ATA-AAAATTA
* *
21106584 TAAAAAGTATAAAAAAATCA
1 TAAAAA-T-TATAAAAATTA
*** *
21106604 TAATTTTTTTTTAAAAATTA
1 TAA--AAATTATAAAAATTA
* * *
21106624 CAAAAATCA-AATAATTA
1 TAAAAATTATAAAAATTA
21106641 TAAAAA--AT-AAAATTAA
1 TAAAAATTATAAAAATT-A
* *
21106657 TAAAATATATTTAAAATTCTA
1 TAAAA-AT-TATAAAAAT-TA
21106678 TAAAAATTAATAAAAACTTA
1 TAAAAATT-ATAAAAA-TTA
*
21106698 TAAATAA-TATAAAAATTT
1 TAAA-AATTATAAAAATTA
* *
21106716 TAATAAAGTATAAAAAATTG
1 TAA-AAATTAT-AAAAATTA
21106736 TAAAAATTATTAAAAGA-TA
1 TAAAAATTA-TAAAA-ATTA
21106755 TAAAA
1 TAAAA
21106760 TTTTTAATTT
Statistics
Matches: 268, Mismatches: 56, Indels: 83
0.66 0.14 0.20
Matches are distributed among these distances:
15 17 0.06
16 7 0.03
17 28 0.10
18 30 0.11
19 46 0.17
20 84 0.31
21 43 0.16
22 13 0.05
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (18 bp):
TAAAAATTATAAAAATTA
Found at i:21106749 original size:10 final size:10
Alignment explanation
Indices: 21106649--21106750 Score: 54
Period size: 10 Copynumber: 10.3 Consensus size: 10
21106639 TATAAAAAAT
*
21106649 AAAATTAAT-
1 AAAATTATTA
*
21106658 AAAATATATTT
1 AAAAT-TATTA
*
21106669 AAAATTCTATA
1 AAAATTAT-TA
*
21106680 AAAATTAATA
1 AAAATTATTA
21106690 AAAACTTA-TA
1 AAAA-TTATTA
21106700 AATAA-TA-TA
1 AA-AATTATTA
21106709 AAAATT-TTA
1 AAAATTATTA
* *
21106718 ATAAAGTATAA
1 A-AAATTATTA
*
21106729 AAAATT-GTA
1 AAAATTATTA
21106738 AAAATTATTA
1 AAAATTATTA
21106748 AAA
1 AAA
21106751 GATATAAAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 19
0.71 0.11 0.19
Matches are distributed among these distances:
8 2 0.03
9 22 0.31
10 28 0.39
11 20 0.28
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAATTATTA
Found at i:21113640 original size:20 final size:20
Alignment explanation
Indices: 21113603--21113642 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21113593 ATGTTTTCGT
* *
21113603 TATAATTTTTATCCTTTTTA
1 TATAATTTTAATCATTTTTA
*
21113623 TATAATTTTAATGATTTTTA
1 TATAATTTTAATCATTTTTA
21113643 ATTCCTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TATAATTTTAATCATTTTTA
Found at i:21117025 original size:56 final size:56
Alignment explanation
Indices: 21116939--21117058 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
21116929 ACAAGGGATG
*
21116939 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAAC
*
21116995 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAAC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAAC
21117051 ATGGGCAA
1 ATGGGCAA
21117059 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAAC
Found at i:21118556 original size:47 final size:47
Alignment explanation
Indices: 21118474--21119089 Score: 302
Period size: 47 Copynumber: 13.3 Consensus size: 47
21118464 TACATGATAG
21118474 TATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGAAAGTGTATA
*
21118523 TATATTTGATAAGGCCTAATGGCCGA-TGATGAATGTG-AAGTGTATA
1 TATATGTGATAAGGCCTAATGG-CGAGTGATGAATGTGAAAGTGTATA
21118569 TATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAGTG---A
1 TATATGTGATAAGGCCTAATGGCGA-GTGATGAATGTGAAAGTGTATA
* * *
21118614 TATATGTGATAAGGCCGAATGGCAATGTGATGAATGTGAACA-TG--TG
1 TATATGTGATAAGGCCTAATGGCGA-GTGATGAATGTGAA-AGTGTATA
* * * * *
21118660 TATGTGTGATAAGG-CGAATGGCCAATGTGATG-ATG-GAGCA-TG--CA
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGA-AAGTGTATA
* * * *
21118704 TATATGAGATAAGG-CGAATGGCCAATGTGATGAATGTGAACA-TG--TG
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGAA-AGTGTATA
* * * *
21118750 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TG
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGAA-AGTGTATA
* * * * *
21118797 TATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACA-TG--CA
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGAA-AGTGTATA
* * * * *
21118844 TATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACA-TG--TG
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGAA-AGTGTATA
* * *
21118891 TATGTGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAACA-TG--TG
1 TATATGTGATAAGGCCT-AATGG-CGA-GTGATGAATGTGAA-AGTGTATA
* * * *
21118938 TATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACA-TG---A
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGAA-AGTGTATA
* * * *
21118984 TATATGAGATAAGGCCGAATGCCAATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCGA-GTGATGAATGTGAAAGTGTATA
* * * *
21119030 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA
1 TATATGTGATAAGGCCTAATGG-CGA-GTGATGAATGTGAAAGTGTATA
21119079 -A-ATGTGATAAG
1 TATATGTGATAAG
21119090 TCCCAAAGGG
Statistics
Matches: 508, Mismatches: 41, Indels: 38
0.87 0.07 0.06
Matches are distributed among these distances:
44 36 0.07
45 77 0.15
46 111 0.22
47 251 0.49
48 7 0.01
49 26 0.05
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCGAGTGATGAATGTGAAAGTGTATA
Found at i:21118687 original size:23 final size:23
Alignment explanation
Indices: 21118661--21118732 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 23
21118651 GAACATGTGT
21118661 ATGTGTGATAAGGCGAATGGCCA
1 ATGTGTGATAAGGCGAATGGCCA
* *
21118684 ATGTGATGAT--GGAGCAT-G-CA
1 ATGTG-TGATAAGGCGAATGGCCA
* *
21118704 TATATGAGATAAGGCGAATGGCCA
1 -ATGTGTGATAAGGCGAATGGCCA
21118728 ATGTG
1 ATGTG
21118733 ATGAATGTGA
Statistics
Matches: 36, Mismatches: 7, Indels: 12
0.65 0.13 0.22
Matches are distributed among these distances:
20 5 0.14
21 5 0.14
22 10 0.28
23 10 0.28
24 6 0.17
ACGTcount: A:0.32, C:0.11, G:0.33, T:0.24
Consensus pattern (23 bp):
ATGTGTGATAAGGCGAATGGCCA
Found at i:21118689 original size:21 final size:21
Alignment explanation
Indices: 21118664--21118734 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
21118654 CATGTGTATG
21118664 TGTGATAAGGCGAATGGCCAA
1 TGTGATAAGGCGAATGGCCAA
* * * *
21118685 TGTGATGATGGAGCAT-GCATATA
1 TGTGAT-AAGGCGAATGGC-CA-A
*
21118708 TGAGATAAGGCGAATGGCCAA
1 TGTGATAAGGCGAATGGCCAA
21118729 TGTGAT
1 TGTGAT
21118735 GAATGTGAAC
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 14 0.39
22 14 0.39
23 8 0.22
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.24
Consensus pattern (21 bp):
TGTGATAAGGCGAATGGCCAA
Found at i:21118855 original size:94 final size:94
Alignment explanation
Indices: 21118465--21119089 Score: 760
Period size: 94 Copynumber: 6.7 Consensus size: 94
21118455 CCAAGTTTGT
* * * *
21118465 ACATGATAGTATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA-AGTGTATATATATT
1 ACATG-TA-TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TATATATG
* *
21118529 TGATAAGGCCTAATGGCCGA--TGATGAATGTGA
61 TGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
21118561 A-GTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAA-A-GTGATATATGTG
1 ACATG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGT-ATATATGTG
21118622 ATAAGGCCGAATGG-CAATGTGATGAATGTGA
63 ATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
21118653 ACATGTGTATGTGTGATAAGG-CGAATGGCCAATGTGATG-ATG-GAGCATGCATATATGAGATA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATA
21118715 AGG-CGAATGGCCAATGTGATGAATGTGA
66 AGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
21118743 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATA
*
21118808 AGGCCGAGTGGCCAATGTGATGAATGTGA
66 AGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
21118837 ACATGCATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGTGTATGTGTGATA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATA
*
21118902 AGGCTGAATGGCCAATGTGATGAATGTGA
66 AGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
21118931 ACATGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACATG-ATATATGAGATA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATA
21118995 AGGCCGAAT-GCCAATGTGATGAATGTGA
66 AGGCCGAATGGCCAATGTGATGAATGTGA
* * *
21119023 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTGTATAAATGTGA
1 ACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGTATATATGTGA
21119086 TAAG
64 TAAG
21119090 TCCCAAAGGG
Statistics
Matches: 471, Mismatches: 42, Indels: 35
0.86 0.08 0.06
Matches are distributed among these distances:
89 9 0.02
90 65 0.14
91 64 0.14
92 77 0.16
93 52 0.11
94 176 0.37
95 24 0.05
96 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATA
AGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:21118898 original size:141 final size:140
Alignment explanation
Indices: 21118473--21119068 Score: 822
Period size: 141 Copynumber: 4.3 Consensus size: 140
21118463 GTACATGATA
* * * * * *
21118473 GTATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA-AGTGTATATATATTTGATAAGG
1 GTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TGTATGTGTGATAAGG
* * * * * * *
21118537 CCTAATGGCCGA--TGATGAATGTGAA-GTGTATATATATGTGATAAGGCCTAATGG-CGATGTG
63 CCGAATGGCCAATGTGATGAATGTGAACATG--CATATATGAGATAAGGCCGAATGGCCAATGTG
21118598 ATGAATGTGAAA-GT
126 ATGAATGTGAAATGT
21118612 GATATATGTGATAAGGCCGAATGG-CAATGTGATGAATGTGAACATGTGTATGTGTGATAAGG-C
1 G-TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCC
*
21118675 GAATGGCCAATGTGATG-ATG-GAGCATGCATATATGAGATAAGG-CGAATGGCCAATGTGATGA
65 GAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGA
21118737 ATGTGAACATGT
130 ATGTGAA-ATGT
*
21118749 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
1 GTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
* *
21118814 AGTGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATATGATGAA
66 AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
21118879 TGTGAACATGT
131 TGTGAA-ATGT
* *
21118890 GTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
1 GTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
*
21118955 AGTGGCCAATGTGATGAATGTGAACATG-ATATATGAGATAAGGCCGAAT-GCCAATGTGATGAA
66 AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
21119018 TGTGAAAGTGT
131 TGTGAAA-TGT
* *
21119029 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 GTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
21119069 GAAGTGTATA
Statistics
Matches: 420, Mismatches: 23, Indels: 28
0.89 0.05 0.06
Matches are distributed among these distances:
134 6 0.01
135 31 0.07
136 33 0.08
137 59 0.14
138 23 0.05
139 81 0.19
140 65 0.15
141 122 0.29
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (140 bp):
GTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
TGTGAAATGT
Found at i:21125393 original size:570 final size:566
Alignment explanation
Indices: 21120995--21126193 Score: 4579
Period size: 568 Copynumber: 9.2 Consensus size: 566
21120985 ACAAGTTACA
* * * * *
21120995 ATAGAGAAATCAATTTTGTTACATTGTCTTTGTGATGCTGAAGCTATTTCTCTTCATCATATGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTA-TTCTCTTCACCATACGTC
* * * * *
21121060 TGAAACGAGGCTTGAAATGGATAGATCTACTAAAAAAAAACAAGGAACTATCTAAAAAGCTTTAG
65 TGAAACGAGGCTTGAAATGGATCGAT-TTCT--CAAAAAA-AAGGAACTTTCTGAAAAGCTTTAG
* * * * * * *
21121125 CTAATTTACGATCACAACCTCCTACTTACAAGATTTTACGAATCTCACGATCCGTTG-ATTTACG
126 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACGGTCCG-CGAATTTACG
* * * * * * * **
21121189 ATCACAACTATCATTTTTAAAGCTTGCTGATTTATGAT-CATAGCTTCAGTTTATTTATTTATGA
190 ATCATAACTGTCATTTTTAAA-CTCGCTGATTTACGTTACA-A-CTTCAGTTCATTGATTTACAA
* * * * *
21121253 TCAAGAACACTTCATTAAGAATTCGCCGATTTACGATCGCAACTCCATTTAAACAGTTCGCTGAT
252 TCATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGAT
* * * * * *
21121318 TTACGATTACAATTTTCATTTTTAAAGCTCGCTGATTTACAATCACT-ATTTCAGTTCAATAATT
317 TTACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCA-TGACTTCAGTTCATTGATT
* * * **
21121382 TACGATCATGAACACTTCTTGGTTCACAAGAAATATAAATTTGCTAAACTAGTTCCAAAC-TCTC
381 TACGATCATGAACACTTCTTGGTTCACAAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGC
* * * * * *
21121446 TCTTGAGATGATTTTCAACTAGCTAATTCTGTCCTCTTTGCCCTTCAGAGCAAGTTAGATGCTAG
446 -C-AGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTGCCTTTCAAAGCAAGTTAGATGCTAG
* * * * * * *
21121511 ACATGATAAATAAATG-TGTATTAAGGAAGAACTAAAAACTAACCTTGAAAGAAGGGGG
509 AGATGATAAATAAA-GACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
* * * ** *
21121569 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCCGAAACTACTTTTCTGAACTGA-ACGT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTA-TTCTCTTCAC-CATACGT
* * * * * * *
21121633 TTGAAACGAGGCTCGAAATGGATTGATTTTTTCAAAAAACAAAGAACTTTCTGAAAAGCTTCAAC
64 CTGAAACGAGGCTTGAAATGGATCGA-TTTCTCAAAAAA-AAGGAACTTTCTGAAAAGCTTTAGC
* * * * *
21121698 TGATTTACGATCACGACCTTGTACTTACAGGATTTTAAAAATCTCACGGTCTGTGGAATTACACG
127 TGATTTACGATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACGGTCCG-CGAATT-TACG
* * ** * * * * *
21121763 ATCAAAACTGTCTTTTTTACTTCTCGCTAATTAACGTTTATAGCTTCAGTTCATTAATTTACAAT
190 ATCATAACTGTCATTTTTA-AACTCGCTGATTTACG-TTACAACTTCAGTTCATTGATTTACAAT
** ** * * * *
21121828 CATGAA-ACTTTGTTAAGAGTTTACC-AGTTTACGATCACTACTTCACTTAAATAGTTCGTTAAT
253 CATGAACACTTCATTAAGAGTTCGCCGA-TTTACGATCGCAACTCCACTTAAATAGTTCGTTGAT
* * * * *
21121891 TTATGATCACAACTGTCATTTTTAAAGCTCACTTATTTACAATCATGACTTCATTTCATTTATTT
317 TTACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTCATTGATTT
* * * *
21121956 ATGATCACGAACACTTCTTGGTTCATAAGGAAA-GTAAATTTGCTGAACTAGTTCCAAGTGTGGC
382 ACGATCATGAACACTTCTTGGTTCACAA-GAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGC
* * *
21122020 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTT-AAAGAAAGTTCGATGCTAGA
446 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCT-GCCTTTCAAAGCAAGTTAGATGCTAGA
* ** * *
21122084 GATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAACTAACCTTG--A-AAGGAGG
510 GATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
* * * * * *
21122138 ATAGAGGAATCAATTTTGTTAAATTGTCTTTGTAATGCTGAAGCTGCA-TCTCTTCACAATATGT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCT--ATTCTCTTCACCATACGT
* * * * * *
21122202 TTGAAACAAAGCTTGTAATGGATCGATCTTCTGAAAAAATAAGGAACTATT-TGAAAAGCTTTCG
64 CTGAAACGAGGCTTGAAATGGATCGAT-TTCTCAAAAAA-AAGGAACT-TTCTGAAAAGCTTTAG
* * * *
21122266 CTGATTTACGATCACTACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCACAAATTTACGA
126 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACGGTCCGCGAATTTACGA
* * * * * * ***
21122331 TCATAACAGTCAATTGTAGAGCTCGTTGATTTACGTATACAACTTCAGGTT-ATTTATTTGTGAT
191 TCATAACTGTCATTTTTA-AACTCGCTGATTTACGT-TACAACTTCA-GTTCATTGATTTACAAT
* * * * * *
21122395 AATGAACACTTAATTAAGAGTTCGCTGATTTATGATCGCAACTCCACTTAAATAGTCCATTGATT
253 CATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATT
* * * * * * * * * * *
21122460 TATGATCAAAACTATCATCTTTAAAGCTTGTTGATTTACAATCACGGCTTTAATTCATTCATTTA
318 TACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTCATTGATTTA
* * *
21122525 CGATCATGAATACGTCTTGGTTCACAAAGAAA-GTAAATTTGTTGAACTAGTTCCAAGCGTGGCC
383 CGATCATGAACACTTCTTGGTTCAC-AAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGCC
* * * * * *
21122589 AGGGATGGTTTTCAACTAGCTAATTTTGACCTCTCTACCGTTT-AGAGCAAGTTAGATGCTAAAC
447 AGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTGCC-TTTCAAAGCAAGTTAGATGCTAGAG
* * * * *
21122653 ATGATTAATAAAGGCGTATTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGGAAG
511 ATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
* * * * * * * **
21122709 ATAAAGTAATAAATTTTATTACGTTGTCTTTATGAAGCTGAAGCTA--CTTTTCACCATTTGTCT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTATTCTCTTCACCATACGTCT
*
21122772 GAAACGAGGCTTGAAATGGATCGATTTGCT-AAAAAAAAGGAAC-TTCTTGAAAAGTTTTAGCTG
66 GAAACGAGGCTTGAAATGGATCGATTT-CTCAAAAAAAAGGAACTTTC-TGAAAAGCTTTAGCTG
* * * * *** * * *
21122835 ATTTATGATCATGACCTTGTACTTACAAGATTTTACA-AAT-TTGTGGATCTGCGGATTTACTAT
129 ATTTACGATCACGACCTTCTACTTACAGGATTTTA-AGAATCTCACGG-TCCGCGAATTTACGAT
* * * * * *
21122898 -ATTAACTGTCTTTTTTACAGCTCGCTGATTTACATTTATAGCTCCAGTTCATTGATTTACAATC
192 CA-TAACTGTCATTTTTA-AACTCGCTGATTTAC-GTTACAACTTCAGTTCATTGATTTACAATC
* * ** *
21122962 ATGAACACTTCATTAAGAGTTCACCGATTTACGATCACAACTTTACTTAAATAGTTCATTGATTT
254 ATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTT
* ** * * *
21123027 ACGATCGCAACTGAGATTTTTAAAGCTCGTTGA-TTACAATCA-CAGCTTTAGTTCATTGATTTA
319 ACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGA-CTTCAGTTCATTGATTTA
* ** * * * **
21123090 TGATCATGAACACTTCCGGGTTCATAAGAAATTTAAATTTGGTGAACTAGTTCCAAGCGTGGTTA
383 CGATCATGAACACTTCTTGGTTCACAAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCA
* * *
21123155 GAGATGATTTTTAACTAGCTAATTTTGACCTCTCTGCCTTTTAAAGCAAGTTAGATTCTAGAGAT
448 GAGATGATTTTCAACTAGCTAATTTTGACCTCTCTGCCTTTCAAAGCAAGTTAGATGCTAGAGAT
* * * ** *
21123220 GATAAATATAGACGTGTTGAGAAAGAACTTAAAACTGATTTTGAAAGAAGGAAG
513 GATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
** *
21123274 ATAGATAAATCAATTTTGTTACATTGT-TTT-TGAGATGCTGAAGCTACTTCTCTTCATCATACG
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAG--GCTGAAGCTA-TTCTCTTCACCATACG
* *
21123337 TCTGAAAAGAGGC-TGAAAATGGATCGATCTGCT-AAAAAAAAGGAACTTTCTGAAAAGCTTTAG
63 TCTGAAACGAGGCTTG-AAATGGATCGAT-TTCTCAAAAAAAAGGAACTTTCTGAAAAGCTTTAG
* * * * *
21123400 -TTAGTTTACAATCACGGCCTTCTACTTACCA-GATTTTATA-AATCTCATGGTCCGTTG-ATTT
126 CTGA-TTTACGATCACGACCTTCTACTTA-CAGGATTTTA-AGAATCTCACGGTCCG-CGAATTT
* * * * *
21123461 ACGATCAAAACTGTCATTTTTAAAGCTCGCTAATTTACGAT-CATGATTTCAATTCATTGATTTA
187 ACGATCATAACTGTCATTTTTAAA-CTCGCTGATTTACGTTACA--ACTTCAGTTCATTGATTTA
* * * ** *
21123525 CAATCATGAATC-GTTCATTAAGAGTTCACCGATTTACAATCATAACTCCACTTAAATAGTTCAT
249 CAATCATGAA-CACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGT
* ** * * ** *
21123589 TGATTAAATATCACAACTGTTATTTTTAAAGCTCGCTGATTTACAATGACAACTTCAATTCATTG
313 TGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTCATTG
* * * * * *
21123654 ATTTACGATTA-GAACACTTCTTGGTTTACAAGGAATATAAATTAT-CTAAACTAGTT-CAAGCA
378 ATTTACGATCATGAACACTTCTTGGTTCACAAGAAATGTAAATT-TGCTGAACTAGTTCCAAGCG
* * * * * * *
21123716 TTG-CTGAAGATGATTTTCAACTAGCTAATTTT-AGCCTCTTTACCCTTCAGAGTAAGTTAGATG
442 TGGCCAG-AGATGATTTTCAACTAGCTAATTTTGA-CCTCTCTGCCTTTCAAAGCAAGTTAGATG
* * * ** * *
21123779 CTAGAGATAATGAATATAGACGTACT-AGAAAAGAACTCAAAACTAACCTTGAAAGAAGGAGG
505 CTAGAGATGATAAATAAAGACGTGTTGAG-GAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
* * ** *
21123841 ATAGAGGAATCAATTTTGTTAAATTGTCTTTGTGACACTGAAGCTACATCTCTTCACCATACGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTA-TTCTCTTCACCATACGTC
* * * * * * * * * **
21123906 TAAAATGAGGTTTGAAGTGGATCGGTCTTCT-AAAAAAAAAGAACTATCTAAAAAGCTTCAATTG
65 TGAAACGAGGCTTGAAATGGATCGAT-TTCTCAAAAAAAAGGAACTTTCTGAAAAGCTTTAGCTG
* * * * *
21123970 ATTTATGATCATGACCTTTTACTTACAGGATTTTATGAATCTCACGGTCTGCGAATTTACGATCA
129 ATTTACGATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACGGTCCGCGAATTTACGATCA
* * ** * * * * **
21124035 TAACTGTCATTTGTAAAGTTTTCTAATTTACATATACAACTTCAATTCATTTATTTATGATCATG
194 TAACTGTCATTTTTAAA-CTCGCTGATTTACGT-TACAACTTCAGTTCATTGATTTACAATCATG
** * * * *
21124100 AGTACTTAATTAAGAG-TCG-C-A---AC--T----A---CACATAAACAGTTCGTTGATTTATG
257 AACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTTACG
* * * * *
21124150 ATCACAACTATCATTTTTAAAGCTCTCTGATTTACAATCA-CAGCTTCAATTCATTTATTTACGA
322 ATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGA-CTTCAGTTCATTGATTTACGA
* * * * * *
21124214 TCATGAAAACTTATTGGGTCACAAGGAATGTAAATTTGCTGAACTAGTTTCAAGCGTGGTCAGAG
386 TCATGAACACTTCTTGGTTCACAAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAGAG
* * * *
21124279 ATGATTTTCAACTAGCTAGTTTTGCCCTCTCTACCCTTT-AAAGCAAGTTAGATGCTAGACATGA
451 ATGATTTTCAACTAGCTAATTTTGACCTCTCT-GCCTTTCAAAGCAAGTTAGATGCTAGAGATGA
* *
21124343 TAAATAAAG-GGATGTTTAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
515 TAAATAAAGACG-TGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
* * * *
21124395 ATAGAGGGATCAATTTTTGTTACATTGTCTTTATGAGGCT-AGAGCTATATCTTTTCACCGTCCG
1 ATAGAGGAATCAA-TTTTGTTACATTGTCTTTATGAGGCTGA-AGCTAT-TCTCTTCACCATACG
* * * * * *
21124459 TCTGAAATGAGGCTTAAAATGAATTGATTTGCTCAAAAAGACAAGGAACTTTTTGAAAAGCTTCA
63 TCTGAAACGAGGCTTGAAATGGATCGATTT-CTCAAAAA-A-AAGGAACTTTCTGAAAAGCTTTA
* * * * *
21124524 GCTGATTTATGATCACGACCTTATACTTACAGGATTATACA-AATCTAATGGTCCGC-AGATTTA
125 GCTGATTTACGATCACGACCTTCTACTTACAGGATTTTA-AGAATCTCACGGTCCGCGA-ATTTA
* * * * * * *
21124587 CGATCATAACTGTCTTTTTTACAGCTTGTTTATTTACATTTACAACTTTAGTTCATTGATTTACA
188 CGATCATAACTGTCATTTTTA-AACTCGCTGATTTAC-GTTACAACTTCAGTTCATTGATTTACA
* * * * * ** * *
21124652 A-CTATGAACACTTCATTAAAAGTCCGCCAATTTACAATTGTGACTTCACTTAAATAGTTTGTTG
251 ATC-ATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTG
* * * * * * *
21124716 AGTTACGATCACAACTATTATTTTTAAAGCTCACTGATTCACAATCACGGCTTCAGTTCATTGAT
315 ATTTACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTCATTGAT
* * * * *
21124781 TTACGATCATGAACAC-TCTTTGTTTCGCAAGGAATGTAAATTTGCTGAACTAGTTCAAAGTGTG
380 TTACGATCATGAACACTTC-TTGGTTCACAAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTG
* * * * *
21124845 GCCAGAGATGATTTTCAACTAGCTAACTCTGACTTCTCTGCCTTTCAAAGTAAATTAGATGCTAG
444 GCCAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTGCCTTTCAAAGCAAGTTAGATGCTAG
* *
21124910 AGATGATAAATAAAGGCGTGTTGAGGAAGAACTCAAAACT-AGCCTTAAAAGAAGGAGG
509 AGATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGA-CCTTGAAAGAAGGAGG
* * * * * * *
21124968 ATAGAGGAATTAATTTTGTTACATTATCTTTGTGAGGCTAAAGCTATTTTTTTGAACCATACGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTATTCTCTT-CACCATACGTC
* ** * * **
21125033 T-AAACGAGGCTCGAAATTAATCGATTTACTCAAAAAACAAGGAAGTTTCTAAAAAAATTTAGCT
65 TGAAACGAGGCTTGAAATGGATCGATTT-CTCAAAAAA-AAGGAACTTTCTGAAAAGCTTTAGCT
** * * * * * * *
21125097 GATTTATAATTACGACCTTGTACTTATAGGGTTTTAAGAATCTCACGGTCTGCGAGTTTTCGATC
128 GATTTACGATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACGGTCCGCGAATTTACGATC
* * *
21125162 A-ACACTGTCTTTTTTACAACAT-GCTGATTTATGTTCACAACTTTAGTTCATTGATTTACAATC
193 ATA-ACTGTCATTTTTA-AAC-TCGCTGATTTACGTT-ACAACTTCAGTTCATTGATTTACAATC
* * * * * * * * * * *
21125225 ATAAAAACTCCATTAAGAGTTTGTCGATTTATGATTGCAACTCGACTTAAACATTTCGTTGGTTT
254 ATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTT
* * *
21125290 ACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTTATTTATTTAT
319 ACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTCATTGATTTAC
* * * * * *
21125355 GATCATTAACTCTTCTTGGTTCATAAGAAATTTAAATTTACTGAACTAGTTTCAAGCGTGGCCAG
384 GATCATGAACACTTCTTGGTTCACAAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAG
* * * * *
21125420 AGATGATTTTCAAGTAGCTAATTTTGACCTCTTTGCCCTTCATAGCAAGTTAGATTCTAGAGATG
449 AGATGATTTTCAACTAGCTAATTTTGACCTCTCTGCCTTTCAAAGCAAGTTAGATGCTAGAGATG
*
21125485 ATAAATAAAGACGTGTTGAGGAAGAACTTAAAACTGACCTTGAAAGAAGGAGG
514 ATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
* * * * * *
21125538 ATAGAGGGATCAATTTTGTTAAATTGTCTTTATTAGGTTGAAGCTACTTCTCTTCACCATATGAC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTA-TTCTCTTCACCATACGTC
* * * * *
21125603 TGGAATGAGGATT-AAATGGATCGATCTTCTCAAAAAAATGAGGAACTATT-TGAAAAGCTTCAA
65 TGAAACGAGGCTTGAAATGGATCGAT-TTCTCAAAAAAA--AGGAACT-TTCTGAAAAGCTTTAG
* * * * * * * *
21125666 CTCATTTACGATCACAACCTTCTACTTATAGGATTTTAAGAATCTTACGATCCACAAATTTATGA
126 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACGGTCCGCGAATTTACGA
* * * * * *
21125731 TCATATCTGTCATTTGTAAAGCTCACTGATTTACTTATACAACTTTAGTTCATTTATTTACGAA-
191 TCATAACTGTCATTTTTAAA-CTCGCTGATTTACGT-TACAACTTCAGTTCATTGATTTAC-AAT
* ** * * *
21125795 CATGAACACTTAATTAAGAGTTCTTCGATTTACGATCGCAAGTCCACTTAAACAATTCGTTGATT
253 CATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATT
* * ** *
21125860 TACGATCACAACTGTCATATTCAAAGCTTACTGATTTACAATC-T-AGTTTCAGTTCATTGATTT
318 TACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGA-CTTCAGTTCATTGATTT
* * * * * * * * **
21125923 ATGATCTTGAGCACTTGTTGGTTCACTAGGAATGTAAATTTGCTGAACTAGTTCCAAGCATTGTT
382 ACGATCATGAACACTTCTTGGTTCACAAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGCC
* * * * * *
21125988 AGAGATGATTTTCAACTAGCTAATTCTGAACTTTTTGTCC-TT-----CAAGTTAGATTCTAGAA
447 AGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTG-CCTTTCAAAGCAAGTTAGATGCTAGAG
* * * *
21126047 ATGATAAATAAATATGTGTTGAGGAAGAACTCAAAATTGACCTTGAAAAAAGGAGG
511 ATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
* * * *
21126103 ATAGAGGAATCAATTTTGTTAAAATTATCTTTATTAGGCTGAAGCTACTTCTCTTCACCATCCGT
1 ATAGAGGAATCAATTTTGTT-ACATTGTCTTTATGAGGCTGAAGCTA-TTCTCTTCACCATACGT
* *
21126168 -TTAAACAAGGCTTGAAATGGATCGAT
64 CTGAAACGAGGCTTGAAATGGATCGAT
21126194 CTACTAAAAT
Statistics
Matches: 3761, Mismatches: 727, Indels: 282
0.79 0.15 0.06
Matches are distributed among these distances:
551 1 0.00
552 78 0.02
553 38 0.01
554 113 0.03
555 71 0.02
556 5 0.00
557 3 0.00
558 134 0.04
559 5 0.00
560 1 0.00
561 3 0.00
563 3 0.00
564 17 0.00
565 304 0.08
566 251 0.07
567 376 0.10
568 562 0.15
569 206 0.05
570 552 0.15
571 301 0.08
572 212 0.06
573 387 0.10
574 134 0.04
575 3 0.00
576 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (566 bp):
ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTATTCTCTTCACCATACGTCT
GAAACGAGGCTTGAAATGGATCGATTTCTCAAAAAAAAGGAACTTTCTGAAAAGCTTTAGCTGAT
TTACGATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACGGTCCGCGAATTTACGATCATA
ACTGTCATTTTTAAACTCGCTGATTTACGTTACAACTTCAGTTCATTGATTTACAATCATGAACA
CTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTTACGATCA
CAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTCATTGATTTACGATCATG
AACACTTCTTGGTTCACAAGAAATGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAGAGATGAT
TTTCAACTAGCTAATTTTGACCTCTCTGCCTTTCAAAGCAAGTTAGATGCTAGAGATGATAAATA
AAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
Found at i:21129498 original size:36 final size:35
Alignment explanation
Indices: 21129416--21129500 Score: 84
Period size: 35 Copynumber: 2.4 Consensus size: 35
21129406 CTTAAGTAAG
* *
21129416 AGTTCACCGATTTACGATCGAAAATCCTTTTAAAC
1 AGTTCACTGATTTACGATCGAAAATCATTTTAAAC
** *
21129451 AGTTCGTTGATTTACGATC-ATAAATGTCATTTTTAA-
1 AGTTCACTGATTTACGATCGA-AAA--TCATTTTAAAC
21129487 AGTTCACTGATTTA
1 AGTTCACTGATTTA
21129501 TAATCACGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
34 1 0.03
35 19 0.47
36 12 0.30
37 8 0.20
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (35 bp):
AGTTCACTGATTTACGATCGAAAATCATTTTAAAC
Found at i:21134637 original size:26 final size:25
Alignment explanation
Indices: 21134608--21134660 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
21134598 GATCTTCCCA
*
21134608 ATTAAAGGCTCTTTGCGAGCTTCCTG
1 ATTAAAGGCTCTTCG-GAGCTTCCTG
* * *
21134634 ATTAATGTCTCTTCGGAGCTTTCTG
1 ATTAAAGGCTCTTCGGAGCTTCCTG
21134659 AT
1 AT
21134661 ATTGCTCGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTAAAGGCTCTTCGGAGCTTCCTG
Found at i:21137813 original size:134 final size:134
Alignment explanation
Indices: 21137565--21137903 Score: 392
Period size: 134 Copynumber: 2.5 Consensus size: 134
21137555 CTAATTTATT
* * * ** * * * *
21137565 ATCACAACTGTCATTTTTAAAGGTTGCTGATTTATGATCACAACTT-AAGTTCATTCATTTATGA
1 ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAA-TTAATTGATTTACGA
* * * ** *
21137629 TCATGAACACTTCATTAAGAGTTCATTGATTTACAGTTGTGACTCCACTTAAACAATTCAATTAT
65 TCATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGAT
21137694 TTACA
130 TTACA
* * *
21137699 ATCACAACTGTCATTTTTAAAGCTCACTGAATTACAATCATAGCTTCAATTGATTGATTTACGAT
1 ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAATTAATTGATTTACGAT
* * * * *
21137764 CTTGAACACTTCATTAAGAGTTCGTCGATTTACAATCGCAACTCTACTTAAACAATTTACTGATT
66 CATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGATT
**
21137829 TATG
131 TACA
* * * *
21137833 ATCACAACTATCATTTTTAAAGCTGGCTGAATTACAATCACGGCTTCAATTAATTGAATTACGAT
1 ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAATTAATTGATTTACGAT
*
21137898 TATGAA
66 CATGAA
21137904 TAGTTCTTGG
Statistics
Matches: 171, Mismatches: 33, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
134 169 0.99
135 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.37
Consensus pattern (134 bp):
ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAATTAATTGATTTACGAT
CATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGATT
TACA
Found at i:21138538 original size:292 final size:292
Alignment explanation
Indices: 21138005--21138538 Score: 684
Period size: 292 Copynumber: 1.8 Consensus size: 292
21137995 TCCTTGAGAT
* * ** * * *
21138005 CAAGTTAGATGCTAGAGATGATGAATATAGGTGTGTTGAGCAAGAACTTAAAAGTGACCTTGAAA
1 CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGCAAGAACTCAAAACTGACCTTAAAA
* * * *
21138070 GAAAAAGGATAGAGGAATCATTTTTTTTACATTGTCTTGGTGAGGCTGAAGCTACTTCTTTTCAC
66 GAAAAAGGATAAAGGAATCATTTTCTTTACATTGTATTGATGAGGCTGAAGCTACTTCTTTTCAC
* * *
21138135 TGTACATTTGAAACAAGTCTTAAATGGATTGATCTGCTCAAAAAAATAAGGAACTTTCCAAAAAG
131 AGTACATTTGAAAAAAGTCTAAAATGGATTGATCTGCTCAAAAAAATAAGGAACTTTCCAAAAAG
* ** * * * * *
21138200 TTTCATTTGATTTACAATATTGACCTTCTACTTATAGGATTTATGAATCTCATGGTTCGCTTCAA
196 CTTCAGCTAATTTACAACATCGACCTTCTACTTACAAGATTTATGAATCTCATGGTTCGCTTCAA
21138265 CTAGCAAATTTTGTCCTCTTTTCTCATTAGAA
261 CTAGCAAATTTTGTCCTCTTTTCTCATTAGAA
*
21138297 CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTAAAA
1 CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGCAAGAACTCAAAACTGACCTTAAAA
** * * * *
21138362 GAAGGAGGATAAAGGAATC-TATTTCTTTACATTGTATTTATTAGGTTGATGCTACTTCTTTTCA
66 GAAAAAGGATAAAGGAATCAT-TTTCTTTACATTGTATTGATGAGGCTGAAGCTACTTCTTTTCA
**
21138426 CAGTACATTTGAAATAAAG-CATAAAATGGATTGATCTGCT-AAAAAAATAAGGATA-TTTCTGA
130 CAGTACATTTGAAA-AAAGTC-TAAAATGGATTGATCTGCTCAAAAAAATAAGGA-ACTTTCCAA
*
21138488 AAAGCTT-AGCTAATTTTGCAACA-CGACCTTCTACTTACAAGATCTTATGAA
192 AAAGCTTCAGCTAA-TTTACAACATCGACCTTCTACTTACAAGAT-TTATGAA
21138539 CCTTACTTTT
Statistics
Matches: 204, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
291 21 0.10
292 161 0.79
293 22 0.11
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (292 bp):
CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGCAAGAACTCAAAACTGACCTTAAAA
GAAAAAGGATAAAGGAATCATTTTCTTTACATTGTATTGATGAGGCTGAAGCTACTTCTTTTCAC
AGTACATTTGAAAAAAGTCTAAAATGGATTGATCTGCTCAAAAAAATAAGGAACTTTCCAAAAAG
CTTCAGCTAATTTACAACATCGACCTTCTACTTACAAGATTTATGAATCTCATGGTTCGCTTCAA
CTAGCAAATTTTGTCCTCTTTTCTCATTAGAA
Found at i:21139671 original size:47 final size:47
Alignment explanation
Indices: 21139617--21139710 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
21139607 GAAAAGTGTC
* *
21139617 AGCTAATTTATGATTATGACATTTTACTTACAGGATTTTACGAATCT
1 AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
* *
21139664 AGCTAATTTACGATCATGACCTTTTACTTATAGGATTTTACGAATCT
1 AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
21139711 CACAATCTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (47 bp):
AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
Found at i:21140814 original size:542 final size:542
Alignment explanation
Indices: 21139787--21140875 Score: 1652
Period size: 542 Copynumber: 2.0 Consensus size: 542
21139777 AGTTCATTGA
* * * * *
21139787 TTTAGGATCATGAACACTTCATTAAGAGTTCATCAATTTATGATCACAACTGCACTTAAACAATT
1 TTTACGATCATGAACACTTAAGTAAAAGTTCACCAATTTATGATCACAACTGCACTTAAACAATT
** * * * * * * *
21139852 TGCTGATTTATGATTAGAATTGTCATTTTTAAAGCTCGCTGATTTACAATCACGACTTCGGTTAA
66 CACTAATTTATGATCACAACTGTCATTTTTAAAGCTCGCTGATATACAAACACGACTTCAGTTAA
* * *
21139917 TTGATTTACGATCATGAAAATTTCTTGGTTCACAAGCAATGTAAATTTGCTGAACTAATTCCAAG
131 TTGATTTACCATCATGAAAACTTCTTGGTTCAAAAGCAATGTAAATTTGCTGAACTAATTCCAAG
* *
21139982 CATGGCTAGAGATGATTTTCAACAAGCTAATTCTGGCCTTTTTGCCTTTCAGAGCAAGTGAGATG
196 CATGGCTAGAGACGATTTTCAACAAGCTAATTCTAGCCTTTTTGCCTTTCAGAGCAAGTGAGATG
21140047 CTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTTTAAAAAGGAGGATA
261 CTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTTTAAAAAGGAGGATA
*
21140112 GAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTGCATCTTTGA
326 GAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATCTTTGA
* * *
21140177 AATGAGGCTTGAAATGGAGTGATCTGCTAAAAAAAAGGAAATTTTTGAAAAGCTTAAGTTGATTT
391 AATGAGGCTTGAAATGGAGTAATCTGCTAAAAAAAAAGAAATTTTTGAAAAGCTTAAGCTGATTT
* *
21140242 ATGATTACGACCTTCTACTTACAAGATTTTACGAATCTCACGGTCCCCTAATTTACGATCACAAC
456 ATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACGATCCCCTAATTTACGATCACAAC
*
21140307 TATAATTTTTAAAGCTCGCTGC
521 TATAATTTTTAAAGCTCGCTAC
* * * * *
21140329 TTTACGATCATGAACCCTTAAGTAAAAGTTCGCCAATTTATGATCGCTACTTCACTTAAACAATT
1 TTTACGATCATGAACACTTAAGTAAAAGTTCACCAATTTATGATCACAACTGCACTTAAACAATT
*
21140394 CATTAATTTACT-ATCACAACTGTCATTTTTAAAGC-CTGCTGATATA-AAACGACGACTTCAGT
66 CACTAATTTA-TGATCACAACTGTCATTTTTAAAGCTC-GCTGATATACAAAC-ACGACTTCAGT
* *
21140456 TAATTGATTTACCATTC-TGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGAACTAATTC
128 TAATTGATTTACCA-TCATGAAAACTTCTTGGTTCAAAAGCAATGTAAATTTGCTGAACTAATTC
** * *
21140520 CAAGCATGGCTAGAGACGATTTTCAACTTGCTAATTCTAGCCTTTCTT-CCTTTTAGAGCAAGTT
192 CAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTAGCCTTT-TTGCCTTTCAGAGCAAGTG
*
21140584 AGATGCTAGAGATGATGAATTTAGATGTGTTGAGGAAGAACTTAAAA-TTGACCTTTAAAGAAGG
256 AGATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTTTAAA-AAGG
* *
21140648 AGGATAGAGGAATCAATTTTGTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTTAACTACAT
320 AGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACAT
* *
21140713 GTTTGAAATGAGGCTTGAAATGGA-TCAATCTGCTAAAAAAAAAGAACTTTTTGAAAAGCTTAAG
385 CTTTGAAATGAGGCTTGAAATGGAGT-AATCTGCTAAAAAAAAAGAAATTTTTGAAAAGCTTAAG
* * *
21140777 CTGATTTATGATCACGACTTTCTACTTACAAGATTTTACGAATCTCACGATTCGCTAATTTACGA
449 CTGATTTATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACGATCCCCTAATTTACGA
21140842 TCACAACTATAATTTTTAAAGCTCGCTAC
514 TCACAACTATAATTTTTAAAGCTCGCTAC
21140871 TTTAC
1 TTTAC
21140876 TACCATATCT
Statistics
Matches: 494, Mismatches: 46, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
541 17 0.03
542 472 0.96
543 5 0.01
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (542 bp):
TTTACGATCATGAACACTTAAGTAAAAGTTCACCAATTTATGATCACAACTGCACTTAAACAATT
CACTAATTTATGATCACAACTGTCATTTTTAAAGCTCGCTGATATACAAACACGACTTCAGTTAA
TTGATTTACCATCATGAAAACTTCTTGGTTCAAAAGCAATGTAAATTTGCTGAACTAATTCCAAG
CATGGCTAGAGACGATTTTCAACAAGCTAATTCTAGCCTTTTTGCCTTTCAGAGCAAGTGAGATG
CTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTTTAAAAAGGAGGATA
GAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATCTTTGA
AATGAGGCTTGAAATGGAGTAATCTGCTAAAAAAAAAGAAATTTTTGAAAAGCTTAAGCTGATTT
ATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACGATCCCCTAATTTACGATCACAAC
TATAATTTTTAAAGCTCGCTAC
Found at i:21141008 original size:542 final size:539
Alignment explanation
Indices: 21139906--21141267 Score: 1555
Period size: 542 Copynumber: 2.5 Consensus size: 539
21139896 TACAATCACG
* * * * * * *
21139906 ACTTCGGTTAATTGATTTACGA-TCATGAAAATTTCTTGGTTCACAAGCAATGTAAATTTGCTGA
1 ACTTCAGTTAACTGATTTACCATTC-TGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGA
*
21139970 ACTAATTCCAAGCATGGCTAGAGATGATTTTCAACAAGCTAATTCTGGCCTTT-TTGCCTTTCAG
65 ACTAATTCCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGGCCTTTCTT-CCTTTCAG
*
21140034 AGCAAGTGAGATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTTT
129 AGCAAGTTAGATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAA-TTGACCTTT
21140099 AAA-AAGGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTT
193 AAAGAAGGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTT
* * *
21140163 AACTGCATCTTTGAAATGAGGCTTGAAATGGAGTGATCTGCTAAAAAAAAGGAAATTTTTGAAAA
258 AACTACATCTTTGAAATGAGGCTTGAAATGGAGTAATCTGCTAAAAAAAAAGAAATTTTTGAAAA
* * *
21140228 GCTTAAGTTGATTTATGATTACGACCTTCTACTTACAAGATTTTACGAATCTCACGGTCCCCTAA
323 GCTTAAGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACGATCCCCTAA
* *
21140293 TTTACGATCACAACTATAATTTTTAAAGCTCGCTGCTTTACGATCATGAACCCTTAAGTAAAAGT
388 TTTACGATCACAACTATAATTTTTAAAGCTCGCTACTTTACGACCAT-AACCCTTAAGTAAAAGT
* * * * * *
21140358 TCGCCAATTTATGATCGCTACTTCACTTAAACAATTCATTAATTTACTATCACAACTGTCATTTT
452 TCG-C-ATTTACGATCGCTACTTCAATTAAACAATTCATCAATTTACAATCACAACTGTCACTTA
* *
21140423 TAAAGCCTGCTGATATAAAACGACG
515 AAAAGCCTGCTGATATAAAACGACA
*
21140448 ACTTCAGTTAATTGATTTACCATTCTGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGAA
1 ACTTCAGTTAACTGATTTACCATTCTGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGAA
** * *
21140513 CTAATTCCAAGCATGGCTAGAGACGATTTTCAACTTGCTAATTCTAGCCTTTCTTCCTTTTAGAG
66 CTAATTCCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGGCCTTTCTTCCTTTCAGAG
*
21140578 CAAGTTAGATGCTAGAGATGATGAATTTAGATGTGTTGAGGAAGAACTTAAAATTGACCTTTAAA
131 CAAGTTAGATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTGACCTTTAAA
* *
21140643 GAAGGAGGATAGAGGAATCAATTTTGTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTTAAC
196 GAAGGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAAC
* *
21140708 TACATGTTTGAAATGAGGCTTGAAATGGA-TCAATCTGCTAAAAAAAAAGAACTTTTTGAAAAGC
261 TACATCTTTGAAATGAGGCTTGAAATGGAGT-AATCTGCTAAAAAAAAAGAAATTTTTGAAAAGC
* * *
21140772 TTAAGCTGATTTATGATCACGACTTTCTACTTACAAGATTTTACGAATCTCACGATTCGCTAATT
325 TTAAGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACGATCCCCTAATT
* * * **
21140837 TACGATCACAACTATAATTTTTAAAGCTCGCTACTTTACTACCAT-A-TCTTCAGT-TCA-TT-G
390 TACGATCACAACTATAATTTTTAAAGCTCGCTACTTTACGACCATAACCCTTAAGTAAAAGTTCG
* * * * ** *
21140897 -ATTTACGATCATG-TACCCTT-AATT-AAGAGTTCGTCGATTTACAATTGCTACT-TCACTTAA
455 CATTTACGATC--GCTA--CTTCAATTAAACAATTCATCAATTTACAATCACAACTGTCACTTAA
* * * * *
21140957 ACAATTCTTTTATTTACGATCACAATTGTCATTTTTAAAGCCCGCTGATTTAAAATGACG
516 A-AA-GC---------C--T-GC---TG--A--TAT-AA--------A------ACGACA
* * * * * *
21141017 ACTTCAGTTAATTGATTTGCGATCCTGAAAACTTCTTGTTTCAAAAGGAATTTAAATTTGTTGAA
1 ACTTCAGTTAACTGATTTACCATTCTGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGAA
* * *
21141082 CTAATTCCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGGCCTCTCTGCATTTCAGAG
66 CTAATTCCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGGCCTTTCTTCCTTTCAGAG
* * * *
21141147 CAAGTTAGATGCTAGTGATGATAAATTTAGACGTATTGAGGAGGAACTTAAAATTGACCTTTAAA
131 CAAGTTAGATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTGACCTTTAAA
* * * *
21141212 GAAGGAGGATAGAGAAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACT
196 GAAGGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACT
21141268 GTTTTCATCA
Statistics
Matches: 702, Mismatches: 74, Indels: 61
0.84 0.09 0.07
Matches are distributed among these distances:
533 15 0.02
534 23 0.03
535 5 0.01
536 4 0.01
537 2 0.00
538 1 0.00
539 6 0.01
540 1 0.00
541 13 0.02
542 384 0.55
543 4 0.01
544 1 0.00
546 1 0.00
547 1 0.00
550 2 0.00
552 1 0.00
554 2 0.00
555 2 0.00
563 1 0.00
569 233 0.33
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (539 bp):
ACTTCAGTTAACTGATTTACCATTCTGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGAA
CTAATTCCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGGCCTTTCTTCCTTTCAGAG
CAAGTTAGATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTGACCTTTAAA
GAAGGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAAC
TACATCTTTGAAATGAGGCTTGAAATGGAGTAATCTGCTAAAAAAAAAGAAATTTTTGAAAAGCT
TAAGCTGATTTATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACGATCCCCTAATTT
ACGATCACAACTATAATTTTTAAAGCTCGCTACTTTACGACCATAACCCTTAAGTAAAAGTTCGC
ATTTACGATCGCTACTTCAATTAAACAATTCATCAATTTACAATCACAACTGTCACTTAAAAAGC
CTGCTGATATAAAACGACA
Found at i:21141485 original size:263 final size:263
Alignment explanation
Indices: 21141014--21141499 Score: 607
Period size: 263 Copynumber: 1.8 Consensus size: 263
21141004 ATTTAAAATG
* * * *
21141014 ACGACTTCAGTTAATTGATTTGCGATCCTGAAAACTTCTTGTTTCAAAAGGAATTTAAATTTGTT
1 ACGACTTCAGTTAATTGATTTACGATCATGAAAACTTCTTGTATCAAAAGGAATTTAAATTTGCT
* *
21141079 GAACTAATTCCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGGCCTCTCTGCATTTCA
66 GAACTAATACCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGACCTCTCTGCATTTCA
* * * * * * * * * *
21141144 GAGCAAGTTAGATGCTAGTGATGATAAATTTAGACGTATTGAGGAGGAACTTAAAATTGACCTTT
131 GAGCAAGCTAGATGCTAGAGATCATAAATATAGACGTATGGAGAAAGAACTCAAAACTGACCTTG
*
21141209 AAAGAAGGAGGATAGAGAAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTC
196 AAAGAAGGAGGATAAAGAAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTC
21141274 ATC
261 ATC
** * *
21141277 ACGACTTCAGTTAATTGATTTATTATCATGAACACTTCTTAG-ATCACAAGGAATTTAAATTTGC
1 ACGACTTCAGTTAATTGATTTACGATCATGAAAACTTCTT-GTATCAAAAGGAATTTAAATTTGC
* * * * * * * * *
21141341 TGAACTAGTACTAAGCGTGGCTAGATATGATTTTCAACTAGCTAATTTTGACCTCTTTGCCCTTT
65 TGAACTAATACCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGACCTCTCTG-CATTT
* * * *
21141406 -AGAGTAAGCTAGATGCTAGAGATCATGAATATAGGCGTGTGGAGAAAGAACTCAAAACTGACCT
129 CAGAGCAAGCTAGATGCTAGAGATCATAAATATAGACGTATGGAGAAAGAACTCAAAACTGACCT
* * *
21141470 TGAAATAATGAGGATAAAGGAATCAATTTT
194 TGAAAGAAGGAGGATAAAGAAATCAATTTT
21141500 CTTTCGTTGT
Statistics
Matches: 184, Mismatches: 37, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
263 179 0.97
264 5 0.03
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (263 bp):
ACGACTTCAGTTAATTGATTTACGATCATGAAAACTTCTTGTATCAAAAGGAATTTAAATTTGCT
GAACTAATACCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGACCTCTCTGCATTTCA
GAGCAAGCTAGATGCTAGAGATCATAAATATAGACGTATGGAGAAAGAACTCAAAACTGACCTTG
AAAGAAGGAGGATAAAGAAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTC
ATC
Found at i:21142084 original size:832 final size:830
Alignment explanation
Indices: 21140445--21142068 Score: 1926
Period size: 833 Copynumber: 2.0 Consensus size: 830
21140435 ATATAAAACG
*
21140445 ACGACTTCAGTTAATTGATTTACCATTCTGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCT
1 ACGACTTCAGTTAATTGATTTACCATTCTGAAAACTTCTTGTATCAAAAGGAATGTAAATTTGCT
* * * *
21140510 GAACTAATTCCAAGCATGGCTAGAGACGATTTTCAACTTGCTAATTCTAGCCTTTCTTCCTTTTA
66 GAACTAATACCAAGCATGGCTAGAGACGATTTTCAACTAGCTAATTCTAGCCTTTCTGCCCTTTA
* * * * * * * * *
21140575 GAGCAAGTTAGATGCTAGAGATGATGAATTTAGATGTGTTGAGGAAGAACTTAAAATTGACCTTT
131 GAGCAAGCTAGATGCTAGAGATCATGAATATAGACGTGTGGAGAAAGAACTCAAAACTGACCTTG
* *
21140640 AAAGAAGGAGGATAGAGGAATCAATTTTGTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTT
196 AAAGAAGGAGGATAAAGGAATCAATTTTCTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTT
* *** **
21140705 AACTACATGTTTGAAATGAGGCTTGAAATGGATCAATCTGCTAAAAAAAAAGAACTTTTTGAAAA
261 AACTACATGTTTGAAACGAGGCTTGAAATGGATCAATCTAAAAAAAAAAAAGAACTTACTGAAAA
* * ** *
21140770 GCTTAAGCTGATTTATGATCACGACTTTCTACTTACAAGATTTTACGAATCTCACGATTCGCTAA
326 GATTAAGCTCATTTACAATCACGAC--TCTACTTACAAGATTTTACGAATCTCACGATCCGCTAA
* * *
21140835 TTTACGATCACAACTATAATTTTTAAAGCTCGCTACTTTACTACCATATCTTCAGTTCATTGATT
389 TTTACGATCACAACTATAATTTTTAAAACTCGCTAATTTACTACCATATCTTCAATTCATTGATT
* * * ** ** *
21140900 TACGATCATGTACCCTTAATTAAGAGTTCGTCGATTTACAATTGCTACTTCACTTAAACAATTCT
454 TACGATAATGAACACTTAATTAAGAGTTCACCGATTTACAATCACAACTTCACTTAAACAATTCT
** * * *
21140965 TTTATTTACGATCACAATTGTCATTTTTAAAGCCCGCTGATTTAAAATGACGACTTCAGTTAATT
519 TAGATTTACGACCACAACTGTCATTTTTAAAGCCCGCTGATTTAAAATCACGACTTCAGTTAATT
* * * * * *
21141030 GATTTGCGATCCTGAAAACTTCTTGTTTCAAAAGGAATTTAAATTTGTTGAACTAATTCCAAGCA
584 GATTTACGATCATAAAAACTTCTTGTTTCAAAAGAAATGTAAATTTGCTGAACTAATTCCAAGCA
* * * * *
21141095 TGGCTAGAGACGATTTTCAACAAGCTAATTCTGGCCTCTCTGCATTTCAGAGCAAGTTAGATGCT
649 TGGCCAGAGACGATTTTCAACAAGCTAAGTCTGACCTCTCTGCATTTCAGAGCAAGTTAAATGCC
* * * * * *
21141160 AGTGATGATAAATTTAGACGTATTGAGGAGGAACTTAAAATTGACCTTTAAAGAAGGAGGATAGA
714 AGAGATGATAAATATAGACGTATTGAGAACGAACTTAAAACTGACCTTGAAAGAAGGAGGATAGA
21141225 GAAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCATC
779 GAAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCATC
** * * *
21141277 ACGACTTCAGTTAATTGATTTATTA-TCATGAACACTTCTTAG-ATCACAAGGAATTTAAATTTG
1 ACGACTTCAGTTAATTGATTTACCATTC-TGAAAACTTCTT-GTATCAAAAGGAATGTAAATTTG
* * * * * *
21141340 CTGAACTAGTACTAAGCGTGGCTAGATATGATTTTCAACTAGCTAATT-TTGACCTCTT-TGCCC
64 CTGAACTAATACCAAGCATGGCTAGAGACGATTTTCAACTAGCTAATTCTAG-CCT-TTCTGCCC
* *
21141403 TTTAGAGTAAGCTAGATGCTAGAGATCATGAATATAGGCGTGTGGAGAAAGAACTCAAAACTGAC
127 TTTAGAGCAAGCTAGATGCTAGAGATCATGAATATAGACGTGTGGAGAAAGAACTCAAAACTGAC
* * * * * *
21141468 CTTGAAATAATGAGGATAAAGGAATCAATTTTCTTTCGTTGTCTTTGTGAGGCTGAAGCTATTTC
192 CTTGAAAGAAGGAGGATAAAGGAATCAATTTTCTTGCATTGTCTTTGTAAGGCTGAAGCTACTTC
* * *
21141533 TCTTCACTATATGTTTGAAACGAGGCTTGAAATGGATCGATCTTAAAAAAAAAAAACAAAGAACT
257 TCTTAACTACATGTTTGAAACGAGGCTTGAAATGGATCAATC-T---AAAAAAAAA-AAAGAACT
* * * *
21141598 TACTGAAGAGATTCAGCTCATTTACAATCACGAC-CTAGTTATAAGATTTTACGAATCTCA-GAT
317 TACTGAAAAGATTAAGCTCATTTACAATCACGACTCTACTTACAAGATTTTACGAATCTCACGAT
* * * * *
21141661 CCGCTGATTTATGATCACAACTATCATTTTTAAAACTCGCTAATTTAC-AGTCACTGT-TTCAAT
382 CCGCTAATTTACGATCACAACTATAATTTTTAAAACTCGCTAATTTACTA-CCA-TATCTTCAAT
*
21141724 TCATTGATTTACGATAATGAACACTTCATTAAGAGTTCACCGATTTA-AGATCACAAC-TCTACT
445 TCATTGATTTACGATAATGAACACTTAATTAAGAGTTCACCGATTTACA-ATCACAACTTC-ACT
* * * * * * *
21141787 TAAACAGTT-TGTAGATTTACGACCATAACTGTCATTTTTAAAGCTCGTTTATTTACAATCACGT
508 TAAACAATTCT-TAGATTTACGACCACAACTGTCATTTTTAAAGCCCGCTGATTTAAAATCACGA
* * ** **
21141851 CTTCAGTTAATTGATTTACTATCATAAAAACTTCTT-TTCTCACAAGAAATGTACTTTTGCTGGC
572 CTTCAGTTAATTGATTTACGATCATAAAAACTTCTTGTT-TCAAAAGAAATGTAAATTTGCTGAA
* * * * * *
21141915 CTATTTCCAAGCGTGGCCAGAGATGATTTTCAACTAGCTAAGTCTGACCTCTCTGTCCTTT-TGA
636 CTAATTCCAAGCATGGCCAGAGACGATTTTCAACAAGCTAAGTCTGACCTCTCTG-CATTTCAGA
* * * *
21141979 GCAAGTTAAATGCCAGAGATGATGAATATAGGCGTGTTGAGAACGAACTTAAAACTGAGCTTGAA
700 GCAAGTTAAATGCCAGAGATGATAAATATAGACGTATTGAGAACGAACTTAAAACTGACCTTGAA
* *
21142044 AGATGGAGCG-TAGAGGAATCAATTT
765 AGAAGGAG-GATAGAGAAATCAATTT
21142069 GTTTTATTGT
Statistics
Matches: 658, Mismatches: 117, Indels: 33
0.81 0.14 0.04
Matches are distributed among these distances:
831 4 0.01
832 255 0.39
833 328 0.50
834 31 0.05
836 6 0.01
837 34 0.05
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (830 bp):
ACGACTTCAGTTAATTGATTTACCATTCTGAAAACTTCTTGTATCAAAAGGAATGTAAATTTGCT
GAACTAATACCAAGCATGGCTAGAGACGATTTTCAACTAGCTAATTCTAGCCTTTCTGCCCTTTA
GAGCAAGCTAGATGCTAGAGATCATGAATATAGACGTGTGGAGAAAGAACTCAAAACTGACCTTG
AAAGAAGGAGGATAAAGGAATCAATTTTCTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTT
AACTACATGTTTGAAACGAGGCTTGAAATGGATCAATCTAAAAAAAAAAAAGAACTTACTGAAAA
GATTAAGCTCATTTACAATCACGACTCTACTTACAAGATTTTACGAATCTCACGATCCGCTAATT
TACGATCACAACTATAATTTTTAAAACTCGCTAATTTACTACCATATCTTCAATTCATTGATTTA
CGATAATGAACACTTAATTAAGAGTTCACCGATTTACAATCACAACTTCACTTAAACAATTCTTA
GATTTACGACCACAACTGTCATTTTTAAAGCCCGCTGATTTAAAATCACGACTTCAGTTAATTGA
TTTACGATCATAAAAACTTCTTGTTTCAAAAGAAATGTAAATTTGCTGAACTAATTCCAAGCATG
GCCAGAGACGATTTTCAACAAGCTAAGTCTGACCTCTCTGCATTTCAGAGCAAGTTAAATGCCAG
AGATGATAAATATAGACGTATTGAGAACGAACTTAAAACTGACCTTGAAAGAAGGAGGATAGAGA
AATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCATC
Found at i:21144813 original size:568 final size:563
Alignment explanation
Indices: 21143584--21144813 Score: 1226
Period size: 568 Copynumber: 2.2 Consensus size: 563
21143574 AGTTAGATGC
* * * * ** *
21143584 TCAATTTTGTTACATTTTCTTTGTGAGGCTAAAGCTACTTCTCTTAACCGTATGCTTGAAACCAA
1 TCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTCTTAATCGTATCCTTGAAATGAG
* *
21143649 CTTGAAATGGATAGATCTACTTAAAAAAACAAGGATCTTTTCGAAAAGCTTAACTTAATTTACAA
66 CTTGAAATGGATAGATCTAC-T--AAAAACAAGGACCTTTTC-AAAAGCTTAACTGAATTTACAA
* * * **
21143714 TCATGACCTTCTACTTATAAGATTTTACGTATCTCACGATCCACATATTGACGATCATATTTGTC
127 TCACGACCTTCTACTTATAAGATTTTACGAATCTCACGATCCACATATTGACGATCAAAACTGTC
* * * * * * *
21143779 ATTTTTAAAGCTCACTGATTTACTATCACGGCTTTAGTTTATAGATTTACTATCATGAACACTTC
192 ATTTTTAAACCTCACTGATTTACAATCACGACTTTAGTTCATAGATTTACGATCATGAAAACTCC
**** *
21143844 ATCAAGAGTTCAACAATTTATGATCGCAACTTAACTCAAATAGTTTGTTGATTTACGATCACATC
257 ATCAAGAGTTCAACAATTTATGATCGCAACTTAACTCAAATAGTTCAAAGATTTACGATCACAAC
* * * * * *
21143909 TGTCATTTTTAAAACATGCTAATTTATAATCACAACTTCAGTTCATTGATTTATGATCATGAACG
322 TGTCATTTTTAAAACATGCTAATTTACAATCACAACTTCAGTTAATTAACTTACGATCATGAACA
* ** *
21143974 CTTCTTGCTTCACAAGGAATGTAAATTTGATGAACTAGTTCCAAGCTTGGCCAAAGATAATTTTC
387 CTTCTTGCTTCACAAGGAATGTAAATTTGA-GAACTAATAACAAGCATGGCCAAAGATAATTTTC
* * * * * *
21144039 AACTAACTAATTCTAACCTCCATGCCTTTTAGAGCAAGTTAGATGTTAAACATGATGATTATAGG
451 AACTAACTAATTCTAACCGCCATGCCTTTCAAAGAAAGTTAGATGCTAAACATGATGAATATAGG
* * * *
21144104 CGTGTTGAGGATGAACTCAAAATTGACCTTAAAATAAAGATAGAGGAA
516 CGTGTTGAGGAAGAACTCAAAACTGAACTTAAAAGAAAGATAGAGGAA
* * * ** * * *
21144152 TCAATTTTTTTACATTGTCTTTGTGAGGCTGAAACTA-TTTTACAAAATAGTA-CGTCTAAAATG
1 TCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCT-CTTAATCGTATCCT-TGAAATG
** * * *
21144215 AGGCTTGATTTGGATTGATCTATTCTAAAAACAAGGAACCTTCTT-AAATGCTTCAGCTGAA-TT
64 A-GCTTGAAATGGATAGATCTA--CTAAAAACAAGG-ACCTT-TTCAAAAGCTT-AACTGAATTT
** * * * * *
21144278 AGGATCACGACTTTCTACTTAT-AGAATTTTATGAATCTCACGGTCTAC-TGATTTACGATCAAA
123 ACAATCACGACCTTCTACTTATAAG-ATTTTACGAATCTCACGATCCACAT-ATTGACGATCAAA
* *
21144341 ACTGTCATTTTTAAACCTCAC-GAATTTACAATCATGACTTCT-GTTCATTGATTTACGATCATG
186 ACTGTCATTTTTAAACCTCACTG-ATTTACAATCACGACTT-TAGTTCATAGATTTACGATCATG
* ** * * *
21144404 AAAACTCCATTAA-ATGTTCGCCAATTTATGA-CTGCAACTTCACTTAAGTAGTTCAAAGATTTA
249 AAAACTCCATCAAGA-GTTCAACAATTTATGATC-GCAACTTAACTCAAATAGTTCAAAGATTTA
* * * *
21144467 CGTTCACAACTGTCATTTTTAAAGC-TCGCTGATTTACAATCACGACTTCAGTTAATTAACTTAC
312 CGATCACAACTGTCATTTTTAAAACAT-GCTAATTTACAATCACAACTTCAGTTAATTAACTTAC
* * * *
21144531 GATCATGAACATTTCTTAG-TTCACAAGGAATGTAAATTTTGCA-AACTAATAATAATCATGGGC
376 GATCATGAACACTTCTT-GCTTCACAAGGAATGTAAA-TTTG-AGAACTAATAACAAGCATGGCC
* * ** * ** * *
21144594 AAAGATGATTTTCAACTAGCTTTTTCTGACCGCTTTGCCTTTCAAAGAAAGTTAGATGCTAGATA
438 AAAGATAATTTTCAACTAACTAATTCTAACCGCCATGCCTTTCAAAGAAAGTTAGATGCTAAACA
* * * * * * *
21144659 TGTTGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAACTTGCAAGAAGGAGGATATAGGAC
503 TGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGAACTT--AA-AAGAAAGATAGAGGAA
* *
21144723 TGAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTACTCTTAATCGTATCCTTGAAATGAG
1 TCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTCTTAATCGTATCCTTGAAATGAG
*
21144788 CTTGAAATGGATCGATCTACTAAAAA
66 CTTGAAATGGATAGATCTACTAAAAA
21144814 AAACAAGGAT
Statistics
Matches: 528, Mismatches: 111, Indels: 46
0.77 0.16 0.07
Matches are distributed among these distances:
567 11 0.02
568 399 0.76
569 31 0.06
570 23 0.04
571 60 0.11
572 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (563 bp):
TCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTCTTAATCGTATCCTTGAAATGAG
CTTGAAATGGATAGATCTACTAAAAACAAGGACCTTTTCAAAAGCTTAACTGAATTTACAATCAC
GACCTTCTACTTATAAGATTTTACGAATCTCACGATCCACATATTGACGATCAAAACTGTCATTT
TTAAACCTCACTGATTTACAATCACGACTTTAGTTCATAGATTTACGATCATGAAAACTCCATCA
AGAGTTCAACAATTTATGATCGCAACTTAACTCAAATAGTTCAAAGATTTACGATCACAACTGTC
ATTTTTAAAACATGCTAATTTACAATCACAACTTCAGTTAATTAACTTACGATCATGAACACTTC
TTGCTTCACAAGGAATGTAAATTTGAGAACTAATAACAAGCATGGCCAAAGATAATTTTCAACTA
ACTAATTCTAACCGCCATGCCTTTCAAAGAAAGTTAGATGCTAAACATGATGAATATAGGCGTGT
TGAGGAAGAACTCAAAACTGAACTTAAAAGAAAGATAGAGGAA
Found at i:21145853 original size:287 final size:288
Alignment explanation
Indices: 21145303--21145872 Score: 768
Period size: 287 Copynumber: 2.0 Consensus size: 288
21145293 TATGAGGTTT
*
21145303 AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
1 AAGCTACTTCTCTTAATTGTATGATTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
* * * * * * *
21145368 CGAGTAACTTTCTGAAAAGCTTCAGTGAAATTACAATCATGACCTTATACTTATAGGATTTTATG
66 CAAGGAACTTTCTAAAAAGCTTCAGCGAAATTACAATCACGACATTATACTTACAGGATTTTATG
* ** * *
21145433 AATCTCACGGTCCGCTAATTTACGATCACAATTCTCTTTTTTGAGGCTCATTGATTTACGATCAT
131 AATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATCAT
* * * *
21145498 GAACATTTCGTTAAGAGTTTCCCAATTTTTTATTTATGATCGCAATTTCACCAAATCAGTTCGTT
196 GAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCAAATCAGTTCGTT
21145563 GATTTACTATCACAACTTCAGTTTGCTG
261 GATTTACTATCACAACTTCAGTTTGCTG
** * * *
21145591 AAGCTACTTCTCTTAATTGTAT-ATTTGAAATGAGAC-TATAAATGGTCTAATCTGCTAAAAGAA
1 AAGCTACTTCTCTTAATTGTATGATTCAAAATGAGACAT-TAAATGGTCCAATCTG-GAAAAAAA
* * *
21145654 A-CAAGGAACTTTCTAAAAAGCTTCAGCGGAATTGCAATCACGACATTCTACTTACAGGATTTTA
64 ACCAAGGAACTTTCTAAAAAGCTTCAGCGAAATTACAATCACGACATTATACTTACAGGATTTTA
* * * * * *
21145718 TGAATCTTATGGTCCACTAATTTACGATCATAATTGTAATATTTGATGCTCGCTGATTTACGATC
129 TGAATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATC
* * ** * *
21145783 ATGAACACTTCATTAAGAGTTTCTCGATTTTTCATTTATGATCGCAACTTCACTTAATTAGTTTG
194 ATGAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCAAATCAGTTCG
21145848 TTGATTTACTATCACAACTTCAGTT
259 TTGATTTACTATCACAACTTCAGTT
21145873 CATTAATTTA
Statistics
Matches: 243, Mismatches: 37, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
286 1 0.00
287 213 0.88
288 29 0.12
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (288 bp):
AAGCTACTTCTCTTAATTGTATGATTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
CAAGGAACTTTCTAAAAAGCTTCAGCGAAATTACAATCACGACATTATACTTACAGGATTTTATG
AATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATCAT
GAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCAAATCAGTTCGTT
GATTTACTATCACAACTTCAGTTTGCTG
Found at i:21151432 original size:20 final size:21
Alignment explanation
Indices: 21151407--21151497 Score: 141
Period size: 20 Copynumber: 4.3 Consensus size: 21
21151397 CATGCATGCG
*
21151407 ATACATAGTA-TCAAAAATAT
1 ATACATAGTATTAAAAAATAT
21151427 ATACATAGTATTAAAAATAGTAT
1 ATACATAGTATTAAAAA-A-TAT
21151450 ATACATAGTATTAAAAAATAT
1 ATACATAGTATTAAAAAATAT
21151471 ATACATAGTATT-AAAAATAT
1 ATACATAGTATTAAAAAATAT
21151491 ATACATA
1 ATACATA
21151498 ATATATACAT
Statistics
Matches: 67, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
20 25 0.37
21 20 0.30
22 2 0.03
23 20 0.30
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (21 bp):
ATACATAGTATTAAAAAATAT
Found at i:21151478 original size:44 final size:42
Alignment explanation
Indices: 21151407--21151493 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 42
21151397 CATGCATGCG
*
21151407 ATACATAGTATCAAAAATATATACATAGTATTAAAAATAGTAT
1 ATACATAGTATAAAAAATATATACATAGTATTAAAAATA-TAT
21151450 ATACATAGTATTAAAAAATATATACATAGTATTAAAAATATAT
1 ATACATAGTA-TAAAAAATATATACATAGTATTAAAAATATAT
21151493 A
1 A
21151494 CATAATATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
43 14 0.33
44 28 0.67
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (42 bp):
ATACATAGTATAAAAAATATATACATAGTATTAAAAATATAT
Found at i:21151579 original size:23 final size:23
Alignment explanation
Indices: 21151553--21151679 Score: 95
Period size: 25 Copynumber: 5.3 Consensus size: 23
21151543 TAATACTACA
*
21151553 TAAATATACACATATATATATAT
1 TAAAAATACACATATATATATAT
21151576 TAAAAA-A-ACATA-ATA-ATAT
1 TAAAAATACACATATATATATAT
*
21151595 TAAAAATACGTACATA-ATATTTAT
1 TAAAAATAC--ACATATATATATAT
21151619 TAAAAAATACATACA-ATATATAGTAT
1 T-AAAAATAC--ACATATATATA-TAT
*
21151645 TAAGAATATACACAATATATATGGTAT
1 TAA-AA-ATACAC-ATATATAT-ATAT
21151672 TAAAAATA
1 TAAAAATA
21151680 TAGTATTAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 24
0.75 0.04 0.21
Matches are distributed among these distances:
19 10 0.12
20 4 0.05
21 5 0.06
22 1 0.01
23 13 0.15
24 5 0.06
25 23 0.27
26 9 0.10
27 16 0.19
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
TAAAAATACACATATATATATAT
Found at i:21151586 original size:21 final size:21
Alignment explanation
Indices: 21151562--21151640 Score: 81
Period size: 23 Copynumber: 3.6 Consensus size: 21
21151552 ATAAATATAC
21151562 ACATATATATATATTAAAAAA-
1 ACATA-ATATATATTAAAAAAT
21151583 ACATAATA-ATATTAAAAATACGT
1 ACATAATATATATTAAAAA-A--T
*
21151606 ACATAATATTTATTAAAAAAT
1 ACATAATATATATTAAAAAAT
21151627 ACATACAATATATA
1 ACAT--AATATATA
21151641 GTATTAAGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
19 10 0.20
20 4 0.08
21 10 0.20
23 16 0.33
24 9 0.18
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.33
Consensus pattern (21 bp):
ACATAATATATATTAAAAAAT
Found at i:21151590 original size:43 final size:43
Alignment explanation
Indices: 21151543--21151631 Score: 101
Period size: 43 Copynumber: 2.0 Consensus size: 43
21151533 CAACTATTAG
* *
21151543 TAATACTACATAAATATAC-ACATATATATATATTAAAAAA-ACA
1 TAATAATA-ATAAAAATACGACATA-ATATATATTAAAAAATACA
* *
21151586 TAATAATATTAAAAATACGTACATAATATTTATTAAAAAATACA
1 TAATAATAATAAAAATACG-ACATAATATATATTAAAAAATACA
21151630 TA
1 TA
21151632 CAATATATAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
42 8 0.21
43 21 0.54
44 10 0.26
ACGTcount: A:0.57, C:0.09, G:0.01, T:0.33
Consensus pattern (43 bp):
TAATAATAATAAAAATACGACATAATATATATTAAAAAATACA
Found at i:21151596 original size:19 final size:20
Alignment explanation
Indices: 21151562--21151615 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
21151552 ATAAATATAC
*
21151562 ACATATATATATATTAAAAAA
1 ACATACATA-ATATTAAAAAA
*
21151583 ACATA-ATAATATTAAAAAT
1 ACATACATAATATTAAAAAA
*
21151602 ACGTACATAATATT
1 ACATACATAATATT
21151616 TATTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 14 0.47
20 11 0.37
21 5 0.17
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (20 bp):
ACATACATAATATTAAAAAA
Found at i:21151659 original size:25 final size:26
Alignment explanation
Indices: 21151616--21151681 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
21151606 ACATAATATT
21151616 TATTAAAAA-ATACATACAATATATA-G
1 TATTAAAAATATAC--ACAATATATAGG
*
21151642 TATTAAGAATATACACAATATATATGG
1 TATTAAAAATATACACAATATATA-GG
21151669 TATTAAAAATATA
1 TATTAAAAATATA
21151682 GTATTAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 10 0.29
26 8 0.23
27 17 0.49
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (26 bp):
TATTAAAAATATACACAATATATAGG
Found at i:21152256 original size:19 final size:19
Alignment explanation
Indices: 21152234--21152304 Score: 62
Period size: 19 Copynumber: 3.8 Consensus size: 19
21152224 ATACTACTGC
21152234 TAATAAATAAT-AAATATAA
1 TAAT-AATAATAAAATATAA
*
21152253 TAATAGTAATAAAATATAA
1 TAATAATAATAAAATATAA
*
21152272 TAGT-ATACATAAAAT-TAA
1 TAATAATA-ATAAAATATAA
21152290 -AATTAA-AATAAAATA
1 TAA-TAATAATAAAATA
21152305 ATGAGAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
17 8 0.19
18 12 0.28
19 23 0.53
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (19 bp):
TAATAATAATAAAATATAA
Found at i:21153850 original size:45 final size:45
Alignment explanation
Indices: 21153777--21153885 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 45
21153767 TGCTTCACTT
* *
21153777 CTCCACTGCAAATTT-AGGGAGATAAGGTCTAATATCTTTAGTCTG
1 CTCCACTAC-AATTTCAGGGAGATAAGGTCTAATATCTTCAGTCTG
* **
21153822 TTTGACTACAATTTCAGGGAGATAAGGTCTAATATCTTCAGTCTG
1 CTCCACTACAATTTCAGGGAGATAAGGTCTAATATCTTCAGTCTG
*
21153867 CTCCACTACAACTTCAGGG
1 CTCCACTACAATTTCAGGG
21153886 TTCCGCTACA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 5 0.09
45 49 0.91
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (45 bp):
CTCCACTACAATTTCAGGGAGATAAGGTCTAATATCTTCAGTCTG
Found at i:21153942 original size:63 final size:63
Alignment explanation
Indices: 21153864--21154011 Score: 233
Period size: 63 Copynumber: 2.3 Consensus size: 63
21153854 TATCTTCAGT
* *
21153864 CTGCTCCACTACAACTTCAGGGTTCCGCTACAACTTCATGGAGGTCAGACTTGTAATTTCAAC
1 CTGCTCCACTGCAACTTCAGGGTTCCGCTACAACTTCATGGAGATCAGACTTGTAATTTCAAC
* * *
21153927 CTGCTCCATTGCAACTTCAAGGTTCCGCTACAACTTTATGGAGATCAGACTTGTAATTTCAAC
1 CTGCTCCACTGCAACTTCAGGGTTCCGCTACAACTTCATGGAGATCAGACTTGTAATTTCAAC
* *
21153990 CTGCTCTACTGCAACTCCAGGG
1 CTGCTCCACTGCAACTTCAGGG
21154012 AAGCAAAATC
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 76 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (63 bp):
CTGCTCCACTGCAACTTCAGGGTTCCGCTACAACTTCATGGAGATCAGACTTGTAATTTCAAC
Found at i:21154242 original size:14 final size:14
Alignment explanation
Indices: 21154209--21154242 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21154199 GTTGATTTTC
*
21154209 TTGAAAAGCAAAAA
1 TTGAAAAACAAAAA
21154223 TT-AAAAACAAAAA
1 TTGAAAAACAAAAA
21154236 TTGAAAA
1 TTGAAAA
21154243 TATCTCGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.68, C:0.06, G:0.09, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Done.