Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 75 of 349
Found at i:21899663 original size:40 final size:40
Alignment explanation
Indices: 21899608--21900033 Score: 330
Period size: 40 Copynumber: 10.8 Consensus size: 40
21899598 TTTTGCGACG
* * * * *
21899608 TCAAAAAGCGCCGCTAATGGTCAACCTATAGTGTCGTTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
* *
21899648 TCAAAAAGCGCCGCTAATACTCGATCAATAGCGGCGTTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
* * * * *
21899688 TCAAAAAGCGCCACTAATGCTTGATCTATAACAGCATTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
* *
21899728 TCAAAAAGCGCCGCTAATGGTCGACCTATAGCGGCGTTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
* * ** *
21899768 TTAAAAAGTGCAACTAATGCTCGATCTATAGCGGTGTTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
* * ****
21899808 TCAAAAAGCGCCGCTAATGC-C-A-CTAAAGC-TC-AACA
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
* ** ** * * * *
21899843 T-AAAATGACGGTG-TTGTGCTTAC-TTTTTTTGCGGCGTTTT
1 TCAAAAAG-CGCCGCTAATGC-T-CGATCTATAGCGGCGTTTT
* * * * *
21899883 TTAAAAAGCACCGCTAATGCTCGACCTATAGTGGCATTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
* *
21899923 TCAAAAAGCGTCGCTAATGCTCAATCTATAGCGGCGTTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
** * * * *
21899963 TTGAAAAGC-ACACTAATGCTCTATCTATAGCGGTGTTTT
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
*
21900002 TCAAAAAGCACCGCTAATGCTCGATCTATAGC
1 TCAAAAAGCGCCGCTAATGCTCGATCTATAGC
21900034 ATCAATTTTT
Statistics
Matches: 290, Mismatches: 85, Indels: 22
0.73 0.21 0.06
Matches are distributed among these distances:
34 9 0.03
35 4 0.01
37 7 0.02
38 4 0.01
39 36 0.12
40 221 0.76
41 9 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (40 bp):
TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTT
Found at i:21900005 original size:79 final size:80
Alignment explanation
Indices: 21899873--21900033 Score: 225
Period size: 79 Copynumber: 2.0 Consensus size: 80
21899863 TACTTTTTTT
* * **
21899873 GCGGCGTTTTTTAAAAAGCACCGCTAATGCTCGACCTATAGTGGCATTTTTCAAAAAGCGTCGCT
1 GCGGCGTTTTTTAAAAAGCACCACTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGCACCGCT
21899938 AATGCTCAATCTATA
66 AATGCTCAATCTATA
* * * **
21899953 GCGGCGTTTTTTGAAAAGCA-CACTAATGCTCTATCTATAGCGGTGTTTTTCAAAAAGCACCGCT
1 GCGGCGTTTTTTAAAAAGCACCACTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGCACCGCT
*
21900017 AATGCTCGATCTATA
66 AATGCTCAATCTATA
21900032 GC
1 GC
21900034 ATCAATTTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 52 0.73
80 19 0.27
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (80 bp):
GCGGCGTTTTTTAAAAAGCACCACTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGCACCGCT
AATGCTCAATCTATA
Found at i:21900708 original size:24 final size:24
Alignment explanation
Indices: 21900680--21900728 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
21900670 AAGAAACTTG
21900680 ATATTTTACACGAATAAAAAAACT
1 ATATTTTACACGAATAAAAAAACT
21900704 ATATTTTACACGAATAAAAAAACT
1 ATATTTTACACGAATAAAAAAACT
21900728 A
1 A
21900729 GCAAAAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.12, G:0.04, T:0.29
Consensus pattern (24 bp):
ATATTTTACACGAATAAAAAAACT
Found at i:21903336 original size:553 final size:552
Alignment explanation
Indices: 21902208--21905179 Score: 4003
Period size: 553 Copynumber: 5.4 Consensus size: 552
21902198 AAATCCTTTT
* * *
21902208 TCTTTGATTTTTAATGTTTTTTTCCTTTCATCCATTGTTTTTGTCGCCTACACCTCCCCTTTTAC
1 TCTTTGA-TTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTAC
* * * * **
21902273 CATATTTTTATTCTTCTTTTTGCATCAAGATTGTGCACCAAATCCTTTAATCTATTGCTTCCATT
65 CATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATT
* * *
21902338 TGTCCTCATATAAATCAACACCAAATCTGAAATCTTGAACTCAAAGATCGATCCTAAACATTGTC
130 TGTCCTCATCTAAATCAGCACCAAATCTGAAATCTTGAACTCAAAGATCGATCCTAAACATTGCC
* *
21902403 AAGAAAGTGCCATTACCGTTTCTCTCAATTAGCTTGGGTAAGAGCTCTTCTTTCTTCAATTTTTT
195 AAGAAAGTGCCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTTCTTCAATTTTTT
* * * *
21902468 GATTAATCTTGCCAATTAAAAACTTAAATTTCCAAATTTGGAATTTGGGAGAATTTTGATGATTT
260 TATTAATCTTGCCAATTAAAAACCTAAATTTCTAGATTTGGAATTTGGGAGAATTTTGATGATTT
* *
21902533 TAAATATATTTTTTCAATTTTTAAAGGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAA
325 TAAATATATTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAA
*
21902598 TCCCTTCTCTTGCAAATAATTTAATTTTTTGACAAAAACCCCTTG-TTTAATGTGTGTGTCGTCC
390 TCCCTTCTCTTGCAAATAATTTATTTTTTTGAC-AAAACCCCTTGTTTTAATGTGTGTGTCGTCC
* * *
21902662 AAGCCGAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATTCTTCTCCT
454 AAGCCTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATCCTCCTCC-
* * *
21902727 TC-TTACCCTAGTAATTCCTCTCCTCCTCTCATAT-
518 TCATTGCCCTACTCATTCCTCTCCTCCTCTCAT-TC
* * *
21902761 TCTTTGATTTTAATATTTTTTTTCCTTTCCTCCATTGTTGTTGTCACCCACACCTCCCATTTTAC
1 TCTTTGATTTTAAT-GTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTAC
* * *
21902826 CATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTATAACCTATTGCTTCCAGT
65 CATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATT
* * * *
21902891 TATCCTCA-CATAAATCAGCACCAAATCTAAAATCTTGAACATC-AACATCGATCCTGAACATTG
130 TGTCCTCATC-TAAATCAGCACCAAATCTGAAATCTTGAAC-TCAAAGATCGATCCTAAACATTG
* * * * *
21902954 CCAAGAAAGTGCCATAATCGTTTCTTTCAACTAGCTTCGGTAATAGCTCTTATTTCTTCAATTTT
193 CCAAGAAAGTGCCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTTCTTCAATTTT
*
21903019 TTGATTAATCTTGCCAATTAAAAACCTAAATTTCTAGATTTGGAATTTGGGAGAATTTTGATGAT
258 TTTATTAATCTTGCCAATTAAAAACCTAAATTTCTAGATTTGGAATTTGGGAGAATTTTGATGAT
* * *
21903084 TTTAAATATATTTTTTCAATTTTTTAATGGGTCTTTAAAGCGTATTTAAATTAGTCCCAGGTTCA
323 TTTAAATATATTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCA
* *
21903149 AATCCCTTCTCTTGCAAATAATTTATTTTTTTGACGAAAACCTCTTGTTTTGATGTGTGTGTCGT
388 AATCCCTTCTCTTGCAAATAATTTATTTTTTTGAC-AAAACCCCTTGTTTTAATGTGTGTGTCGT
* ** * *
21903214 CCAAGCCTACTAAACCTAGACATAAGTATTATTTTTTCACAAATAATCAGACTTTAATCCTTCTC
452 CCAAGCCTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATCCTCCTC
* * *
21903279 CTCATTTCCCAAGTCATTCCTCTCCTCCTCTCATTC
517 CTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTC
* *
21903315 TCTTTGATTTTAATGTTTTTTTTCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCCTTTTACC
1 TCTTTGATTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACC
* * * * * *
21903380 ATCTCTTTCTTTTTCTTTTTGTACCAAGATTGTTCACCATCTCCTTTAATCTATTTCTTTCGTTT
66 ATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTT
* * * * * * *
21903445 ATCCTTATCTAAATCAACACCAAATCTAAAATATTGAACTCGAAGATCGATCCTGAACATTGCCA
131 GTCCTCATCTAAATCAGCACCAAATCTGAAATCTTGAACTCAAAGATCGATCCTAAACATTGCCA
* *
21903510 AGAAAGTGACATTATCGTTTCTCTCAACTAGCTTGGGTAAGAACTCTTCTTTCTTCAATTTTTTT
196 AGAAAGTGCCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTTCTTCAATTTTTTT
* * * ** * *
21903575 ATTAATGTTTCTAATTAAAAACCTAAATTTAAAGATTTGGAATTTTGGAGAATTTTAATGATTTT
261 ATTAATCTTGCCAATTAAAAACCTAAATTTCTAGATTTGGAATTTGGGAGAATTTTGATGATTTT
* * * *
21903640 AAATATATATTTTTCAAATTTTTAATGGTTCTTTAAATCATATTTAAATTAGTCCCAAGTTCAAA
326 AAATATAT-TTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAA
* * *
21903705 TCCCTTCTCCTGCAAACAATTTAATTTTTTTTGACAAAAACCCCTTGTTTTATTGTGTGTGTCGT
390 TCCCTTCTCTTGCAAATAATTT-A-TTTTTTTGAC-AAAACCCCTTGTTTTAATGTGTGTGTCGT
* * * *
21903770 CCAATCCTAGTAAACCTAGGCATAAGTATTATTTTCTCACAAATAATCAGCCTTTAATCCACCTC
452 CCAAGCCTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATCCTCCTC
* *
21903835 CTTATTGCCCTACTCATTCATCTCCTCCTCTCATTC
517 CTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTC
* *
21903871 TCTTTGATTTTAATGATTTTTTCCTTTCCTCCATTGTTGTTGTTGCCTACACCTCCCATTTTACC
1 TCTTTGATTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACC
* * * *
21903936 ATCTCTTTTTTTTTTTTTTTTGTATCAAGATTGTGCACCATCCCCTTTAATCTATTGCTTCCATT
66 ATCTC-TTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATT
* * *
21904001 TGTCCTC-TTTCAAATCAGCACCAAATCTGAAATCTTGAACTCCAAA-ATCGACCCTGAACATTG
130 TGTCCTCATCT-AAATCAGCACCAAATCTGAAATCTTGAACT-CAAAGATCGATCCTAAACATTG
* * *
21904064 CTAAGATAGTGGCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTTCTTC-ATTTT
193 CCAAGAAAGTGCCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTTCTTCAATTTT
* * * *
21904128 TTTATTCATCTTGCCAATTAAAAATCTAAATTTCTAGATTTGGAATTTAGGAGAACTTTGATGAT
258 TTTATTAATCTTGCCAATTAAAAACCTAAATTTCTAGATTTGGAATTTGGGAGAATTTTGATGAT
* *
21904193 TTTAAATATATTTTCTCAA-TTTTTAATGGGTCTTTAAATCATATTTAAATCAGTCCCAAGTTCA
323 TTTAAATATATTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCA
* * * *
21904257 AATCTCTTCTCCTGCAAATAATTTAATTTTTTTTGTCAAAACCCACTTGTTTTAATGTGTGCGTC
388 AATCCCTTCTCTTGCAAATAATTT-A-TTTTTTTGACAAAACCC-CTTGTTTTAATGTGTGTGTC
* * * *
21904322 ATCCAAGCCTAGTAAACCTAGGTATATAAGTATTATTTTATCACAAACAATCAGCCTTTAATCCA
450 GTCCAAGCCTAGTAAACCTAGG--TATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATCCT
* *
21904387 CCTCCTCATTTCCCTACTCATTCATCTCCTCCTCTCATTC
513 CCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTC
*
21904427 TCTTTGATTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCCACACCTCCCATTTTACC
1 TCTTTGATTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACC
* *
21904492 ATCTCATTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCCCCTTTAATCTATTGCTTCCATTT
66 ATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTT
* * * *
21904557 GTCCTCATCTAAATCAGCACCAAATCTGAAATATTGACCTCCAAGGTCGATCCTAAACATTGCCA
131 GTCCTCATCTAAATCAGCACCAAATCTGAAATCTTGAACTCAAAGATCGATCCTAAACATTGCCA
* * * *
21904622 AGAAAGTGTCACTATCGTTTCT-TGGAACTAGCTTTGGTAAGAGCT-TTGCTTTCTTCAATTTTT
196 AGAAAGTGCCATTATCGTTTCTCT-CAACTAGCTTGGGTAAGAGCTCTT-CTTTCTTCAA-TTTT
* * * *
21904685 TTTACTAAACCTT-CCAATTTTTAAAAACCTAAATTTC-AAATTTTGTAATTTGGGAGAATTTTG
258 TTTA-TTAATCTTGCCAA---TTAAAAACCTAAATTTCTAGA-TTTGGAATTTGGGAGAATTTTG
* * * * * * * ****
21904748 ATGATTTTAAATACATTTTTTTAGTTTTTTAATTGGT-TTTCAAATCGAATGTAAATCAATATTG
318 ATGATTTTAAATATATTTTTTCAATTTTTTAATGGGTCTTT-AAATCGTATTTAAATCAGTCCCA
* * **
21904812 AGTTCAAATCCCTTCTTTTGCAAACAATTTAAATTTTTGACAAAACCCCCTTGTTTTAATGTGTG
382 AGTTCAAATCCCTTCTCTTGCAAATAATTTATTTTTTTGACAAAA-CCCCTTGTTTTAATGTGTG
* * ** * *
21904877 TGTCGTCCAAGCTTAGTAAACCTAGGTGTAAGTGCTATTCTTTCACAAATAATCAGTCTTTAATC
446 TGTCGTCCAAGCCTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATC
*
21904942 CTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCAATC
511 CTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTC
* * * * * * * *
21904984 TATTTGATTTTAATTTTTTTTTCTTTTCCTCCATTGTTGTTCTGGCTTACACCACCCCTTTTACC
1 TCTTTGATTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACC
* * * * * *
21905049 ATCTTTTTCTTCTTGTTGTTGCATCACGATTGTGCACCATATCCTTTAATCTATTGCTTCCATTT
66 ATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTT
*
21905114 -TCCCTCATCTACATCAGCACCAAATCTGAAATCTTGAACTCAAAGATCGATCCTAAACATTGCC
131 GT-CCTCATCTAAATCAGCACCAAATCTGAAATCTTGAACTCAAAGATCGATCCTAAACATTGCC
21905178 AA
195 AA
21905180 TTAAAAACTT
Statistics
Matches: 2148, Mismatches: 239, Indels: 60
0.88 0.10 0.02
Matches are distributed among these distances:
552 9 0.00
553 674 0.31
554 312 0.15
555 160 0.07
556 411 0.19
557 408 0.19
558 8 0.00
559 52 0.02
560 62 0.03
561 52 0.02
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (552 bp):
TCTTTGATTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACC
ATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTT
GTCCTCATCTAAATCAGCACCAAATCTGAAATCTTGAACTCAAAGATCGATCCTAAACATTGCCA
AGAAAGTGCCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTTCTTCAATTTTTTT
ATTAATCTTGCCAATTAAAAACCTAAATTTCTAGATTTGGAATTTGGGAGAATTTTGATGATTTT
AAATATATTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAAT
CCCTTCTCTTGCAAATAATTTATTTTTTTGACAAAACCCCTTGTTTTAATGTGTGTGTCGTCCAA
GCCTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCA
TTGCCCTACTCATTCCTCTCCTCCTCTCATTC
Found at i:21908010 original size:554 final size:553
Alignment explanation
Indices: 21905173--21908399 Score: 4427
Period size: 554 Copynumber: 5.8 Consensus size: 553
21905163 ATCCTAAACA
* *
21905173 TTGCCAATTAAAAACTTAAATGTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
1 TTGCCAATTAAAAACCTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
* * *
21905238 TTTTTTCAATTTTTTAAATGGGTCTTTAAATCGTATTTAAATTAGTCCCAAGTTGAAATTCCTTC
66 TTTTTTCAATTTTTT-AATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTC
*
21905303 TCTTGCAAATAATTTAATTTTTTGAC-AAAACCCCATTGTTATAATGTGTGTGTCGTCCAAGCCT
130 TCTTGCAAATAATTTAATTTTTTGACAAAAACCCC-TTGTTTTAATGTGTGTGTCGTCCAAGCCT
*
21905367 AGTAAACCTAGGTATAAGTATT-ATTTCTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTT
194 AGTAAACCTAGGTATAAGTATTAATTT-TTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTG
* * * *
21905431 CCCTATTCATTCCGCTCCTCCCCTCATTCTCTTTGATTTTAATGTTTTTTTTCTTTGCCTCCATT
258 CCCTATTCATTCCTCTCCTCCTCTCATTCTCTTTGATTTTAATATTTTTTTCCTTT-CCTCCATT
** * * *
21905496 GTTGTTGTCATCTACACCTCCCATTTTACCATCTCTTTATTTTTCTTTTTGTATCAAGATTTTGC
322 GTTGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGC
* * * * * *
21905561 ACCATCTCCTTTAATCTATTGCTTCCATTTATCTTCATTTAAATCAGCACCTAATCTGAAATCCT
387 ACCATCTCCTTTAATCTATTGCTTCCATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTT
* * * * *
21905626 GCACCCCAAGATCGATCCTGAACATTGCCAAGAAAGT-GTATTTGTCGTTTCTCTCAACTAGCTT
452 GAACTCCAAGATCGATCCTAAACATTGCCAAGAAAGTGGCA-TTATCGTTTCTCTCAACTAGCTT
* * *
21905690 GGGTTAGAGCTTTTCTTTCTTCATTTTTTTTATTAATC
516 GGGTAAGAGCTCTTCTTTCTTCAATTTTTTTATTAATC
* *
21905728 TTGCCAATTAAAAATCTAAATTTCTAGATTTGGAATTTGGGAGAATTTTGATGATTTT--A-AT-
1 TTGCCAATTAAAAACCTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
* *
21905789 TTTTTTCATTTTTTTAATGCGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTCT
66 TTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTCT
* * *
21905854 -TTACAAATAATTTAATTTTTTGACAAAAGCCCATTGTTTTAATGTGTGTGTCGTCCAAGCCTAG
131 CTTGCAAATAATTTAATTTTTTGACAAAAACCCCTTGTTTTAATGTGTGTGTCGTCCAAGCCTAG
* *
21905918 TAAACCTAGGTATAAGTATT-A---TT------T--T---CCTTTAATCCACCTTCTCATTGCCC
196 TAAACCTAGGTATAAGTATTAATTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTGCCC
* *
21905968 TACTT-ATTCATCTCCTCCTCTCATTCTATTTGATTTTAATGA-TTTTTTCCTTTCCTCCATTGT
261 TA-TTCATTCCTCTCCTCCTCTCATTCTCTTTGATTTTAAT-ATTTTTTTCCTTTCCTCCATTGT
*
21906031 TGTTGTTGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCAC
324 TGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCAC
*
21906096 CATCCCCTTTAATCTATTGCTAT-CATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTTG
389 CATCTCCTTTAATCTATTGCT-TCCATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTTG
* * *
21906160 AACTCCAAGATCAATCCTAAACATTGCCAAGAAAGTGGTATTATCGTTTCTCTCAACTAGCTTAG
453 AACTCCAAGATCGATCCTAAACATTGCCAAGAAAGTGGCATTATCGTTTCTCTCAACTAGCTTGG
*
21906225 GTAAGAGCTCTTCTTTCTTCATTTTTTTTATTAATC
518 GTAAGAGCTCTTCTTTCTTCAATTTTTTTATTAATC
* * * * *
21906261 ATGCCAATTAAAAACCTAAATTTCTAGATTTGGAATTTTGGAGAATTTTTATTATTTTAAATATA
1 TTGCCAATTAAAAACCTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
* * *
21906326 TTTTCTCAGTTTTTTAATGGCTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTCT
66 TTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTCT
*
21906391 CTTGCAAATAATTTAATTTTTTGACAAAAACCCCTTG-TTTAATGTGTGTGTCGTCCAAGCCGAG
131 CTTGCAAATAATTTAATTTTTTGACAAAAACCCCTTGTTTTAATGTGTGTGTCGTCCAAGCCTAG
* * * *
21906455 TAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATTCTTCTCCTCATTGCTC
196 TAAACCTAGGTATAAGTATTAATTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTGCCC
* * * * * * *
21906520 GAGTAATTCCACTCCTCCTCTCATTTTCTTTGATTTTAATGTTTTTTTTCTTTCCTCCATTGTTG
261 TATTCATTCCTCTCCTCCTCTCATTCTCTTTGATTTTAATATTTTTTTCCTTTCCTCCATTGTTG
* *
21906585 TTGTCACCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGAATCAAGATTGTGCACCA
326 TTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCA
* *
21906650 TCCCCTTTAATCTATTGCTTCCATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTTAAAC
391 TCTCCTTTAATCTATTGCTTCCATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTTGAAC
* *
21906715 TCCAAGATCGATCCTAAACATTGCCAAGAAAGTGGCATTATCGTTTCTCTGAACTAGCTTTGGTA
456 TCCAAGATCGATCCTAAACATTGCCAAGAAAGTGGCATTATCGTTTCTCTCAACTAGCTTGGGTA
* * * *
21906780 TGAGGATCTTCTGTCTTCAATTCTTTTTTTTTTACTAATC
521 AGA-GCTCTTCTTTCTTCAA------TTTTTTTATTAATC
* *
21906820 TTTG-CAATTAAAAACCTAAATTTCAAAATTTGGAATTTGGGAGAATTTTGATGATTTTAAATAT
1 -TTGCCAATTAAAAACCTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATAT
* * * * * *
21906884 ATTTTTTCAGTTTTTTAATGGGTCTTGAAATCGTCTGTAAATCAATCCCCAGTTCAAATCCCTTC
65 ATTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTC
* * *
21906949 TCTTGCAAATAGTTTAATTTTTTGACAAAACCCCCTTGTTTTAATGTGTGTGTCATCCAAGCCTA
130 TCTTGCAAATAATTTAATTTTTTGACAAAAACCCCTTGTTTTAATGTGTGTGTCGTCCAAGCCTA
* * * * * * ** * **
21907014 GTAAATCAAGGTATAAATTTTATTTTTTTACAAATAATCAATCTTTAATCCTCCTCCTCGTTATC
195 GTAAACCTAGGTATAAGTATTAATTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTGCC
* * * * * * *
21907079 CTACTCATTCCTTTCCTCCTCTCAATCTATTTGATTTTAATGTTTTTTTTTCTTTTCCTCCATTT
260 CTATTCATTCCTCTCCTCCTCTCATTCTCTTTGATTTTAA--TATTTTTTTCCTTTCCTCCATTG
* * * * *
21907144 TTGTTCTGGCCTACACCATTCC-TTTTACCATCTCTTTCTTCTTCTGTTTGTATCAATATTGTGC
323 TTGTTGTCGCCTACACC-TCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGC
*
21907208 ACCATCTCCTTTAATCTATTGCTTCCATTTATCCTCATCTAAATCTA-CACCAAATCTAAAATCT
387 ACCATCTCCTTTAATCTATTGCTTCCATTTGTCCTCATCTAAATC-AGCACCAAATCTAAAATCT
* * * * * *
21907272 TGAACTCGAATATCGATCCTGAACATT-CCTAAGAAAATGGCATTATCTTTTCTCTCAACTAGTT
451 TGAACTCCAAGATCGATCCTAAACATTGCC-AAGAAAGTGGCATTATCGTTTCTCTCAACTAGCT
* * *
21907336 TGGGTAAGAGCTCTTATTTCTTCAATTTTTTTTACTAATA
515 TGGGTAAGAGCTCTTCTTTCTTCAA-TTTTTTTATTAATC
* * * *
21907376 TTGCCATTTAAAAACCTAAATTTCCAGATTTTGAATTTGAGAGAATTTTGATTATTTTAAATATA
1 TTGCCAATTAAAAACCTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
* * * *
21907441 TTTTTTC-AGTTTTTAATGGGTCTTTAAATCATATTTTAATCAGTCTCAAGTTCAAATCCCTTCT
66 TTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTCT
* *
21907505 CTTGCAAATAATTTAATTTTTTTAACAAAAACCCCTTGTTTTAATTTGTGTGTCGTCTC-AGCCT
131 CTTGCAAATAATTTAA-TTTTTTGACAAAAACCCCTTGTTTTAATGTGTGTGTCGTC-CAAGCCT
* *
21907569 AGTAAACCTAGGTATAAGTATTAATTTTTCACAAATAATCAACATTTAATCCTCCTCCTCATTGC
194 AGTAAACCTAGGTATAAGTATTAATTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTGC
* * * *
21907634 CCTATTCATTCCTCTCCTCCTCCCATTCTCTTTGATTTCTAATATTCTTTTCCTTTCATCTATTG
259 CCTATTCATTCCTCTCCTCCTCTCATTCTCTTTGATTT-TAATATTTTTTTCCTTTCCTCCATTG
* * * *
21907699 TTGTTGTCGCGTACACCTCCCCTTTTACCATCTTTTTCTTCTT-TTTTTGTAGCAAGATTGTGCA
323 TTGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCA
* * * *
21907763 CCATATCATTTAATCTATTGCTTCCATTTGTCCTCATCTAAATCAACACCAAATCTGAAATCTTG
388 CCATCTCCTTTAATCTATTGCTTCCATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTTG
* * * *
21907828 AACTCAAAGATCAATCCTAAACATTTCCAAGAAAGTGCCATTATCGTTTCTCTCAACTAGCTTGG
453 AACTCCAAGATCGATCCTAAACATTGCCAAGAAAGTGGCATTATCGTTTCTCTCAACTAGCTTGG
21907893 GTAAGAGCTCTTCTTTCTTCAATTTTTTTATTAATC
518 GTAAGAGCTCTTCTTTCTTCAATTTTTTTATTAATC
* * *
21907929 TTGCCCAGTAAAAACTTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
1 TTGCCAATTAAAAACCTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
*
21907994 TTTTTTCAATTTTTTAAATGGGTCTTTAAATCATATTTAAATCAGTCCCAAGTTCAAATCCCTTC
66 TTTTTTCAATTTTTT-AATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTC
*
21908059 TCTTGCAAATAATTTAATTTTTTGACAAAAACCCTTTGTTTTAATGTGTGTGTCGTCCAAGCCTA
130 TCTTGCAAATAATTTAATTTTTTGACAAAAACCCCTTGTTTTAATGTGTGTGTCGTCCAAGCCTA
*
21908124 GTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTGCC
195 GTAAACCTAGGTATAAGTATTAATTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTGCC
** * * *
21908189 CTAGCCATTCCTCTCCTCCTCTCATTCTCTTTGATTTT-CTTTTATTTTTCCTTTCTTCCATTGT
260 CTATTCATTCCTCTCCTCCTCTCATTCTCTTTGATTTTAATATT-TTTTTCCTTTCCTCCATTGT
* * * * * *
21908253 TGTTGTTGCGTGCACCTCCCCTTTTGCCATCTCTTTCGTCTTCTTTTTGTATCAAGATTGTGCAC
324 TGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCAC
* * * *
21908318 CATCTCCGTTAATCTATTGCTTACATTTGTCCTCATCTAAATCAGCACCAAATTTGAAATCTTGA
389 CATCTCCTTTAATCTATTGCTTCCATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTTGA
*
21908383 ATTCCAAGATCGATCCT
454 ACTCCAAGATCGATCCT
21908400 GAATGTAACA
Statistics
Matches: 2365, Mismatches: 253, Indels: 109
0.87 0.09 0.04
Matches are distributed among these distances:
533 266 0.11
534 69 0.03
535 3 0.00
536 2 0.00
537 108 0.05
538 33 0.01
539 1 0.00
541 2 0.00
545 2 0.00
547 1 0.00
549 75 0.03
550 52 0.02
551 16 0.01
552 266 0.11
553 148 0.06
554 394 0.17
555 236 0.10
556 204 0.09
557 4 0.00
559 162 0.07
560 110 0.05
561 15 0.01
562 192 0.08
563 4 0.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (553 bp):
TTGCCAATTAAAAACCTAAATTTCCAGATTTGGAATTTGGGAGAATTTTGATGATTTTAAATATA
TTTTTTCAATTTTTTAATGGGTCTTTAAATCGTATTTAAATCAGTCCCAAGTTCAAATCCCTTCT
CTTGCAAATAATTTAATTTTTTGACAAAAACCCCTTGTTTTAATGTGTGTGTCGTCCAAGCCTAG
TAAACCTAGGTATAAGTATTAATTTTTCACAAATAATCAGCCTTTAATCCTCCTCCTCATTGCCC
TATTCATTCCTCTCCTCCTCTCATTCTCTTTGATTTTAATATTTTTTTCCTTTCCTCCATTGTTG
TTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCA
TCTCCTTTAATCTATTGCTTCCATTTGTCCTCATCTAAATCAGCACCAAATCTAAAATCTTGAAC
TCCAAGATCGATCCTAAACATTGCCAAGAAAGTGGCATTATCGTTTCTCTCAACTAGCTTGGGTA
AGAGCTCTTCTTTCTTCAATTTTTTTATTAATC
Found at i:21909977 original size:42 final size:42
Alignment explanation
Indices: 21909883--21910027 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 42
21909873 TGTCATGTAT
* * ** *
21909883 CAGATATGGTCTTACATGTTATCACATATCGATGCCAATGTCC
1 CAGACATGGTCTTACACGAAATCA-ATAACGATGCCAATGTCC
*
21909926 CAAACATGGTCTTACACGAAATCATATAACGATG-CAATGTCC
1 CAGACATGGTCTTACACGAAATCA-ATAACGATGCCAATGTCC
* *
21909968 CAGACATGGTCTTACACGTAATAACAAT-ATGATGCCAATGTCC
1 CAGACATGGTCTTACACG-AA-ATCAATAACGATGCCAATGTCC
*
21910011 CAGACATGGCCTTACAC
1 CAGACATGGTCTTACAC
21910028 ATAATCTCAT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 30 0.34
43 55 0.62
44 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
CAGACATGGTCTTACACGAAATCAATAACGATGCCAATGTCC
Found at i:21912016 original size:17 final size:17
Alignment explanation
Indices: 21911994--21912032 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
21911984 AATCATATTT
21911994 AAATCAGTCCCAAGTTG
1 AAATCAGTCCCAAGTTG
21912011 AAATCAGTCCCAAGTTG
1 AAATCAGTCCCAAGTTG
21912028 AAATC
1 AAATC
21912033 CCTTCTCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (17 bp):
AAATCAGTCCCAAGTTG
Found at i:21912379 original size:571 final size:553
Alignment explanation
Indices: 21911252--21913467 Score: 3210
Period size: 553 Copynumber: 4.0 Consensus size: 553
21911242 AGCTGTTACA
* *
21911252 CTGAACATTGCCATGAAAGTGTCATTATCGTTTCTCTCAACTAGCTTTGGTAAGAGCTCTTCTTT
1 CTGAACATTGCCAAGAAAGTGTCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTT
* * *
21911317 CTTCAA-TTTTTTTACTAA-CTTGCCAATTAAAAAACTAAGTTTCCAAATTTGGAATTTGGGAGA
66 CTTCAATTTTTTTTATTAATCTTGCCAATTAAAAAACTAAATTTCCAGATTTGGAATTTGGGAGA
* *
21911380 ATTTTGAAGATTTTAAATATATTTTTTTAGTTTTTTAAT-GAGTCTTTAAATCGTATTTAAATCA
131 ATTTTGATGATTTTAAATATATTTTTTCAGTTTTTTAATGGA-TCTTTAAATCGTATTTAAATCA
* * * * * * *
21911444 GTCCCTAGTTCAAATCCTTTCTATTGCAAACAGTTTAATTTTTTGACAAAAACCCCTTATTTTAA
195 GTCCCAAGTTCAAATCCCTTCTCTTGCAAATAATTTAATTTTTTGAC-AAAACCCATTGTTTTAA
* * *
21911509 TGTGTGTGTCATCCAAGCCTAATAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCAT
259 TGTGTGTGTCATCCAAGACTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCT
* * * * *
21911574 TTAGTCCTTCTCCTCATTG-CCTAGTCATTCCTCTCCTCCTCTCATTCTTTTTAATTTTAATGTT
324 TTAATCCTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTCTATTTGATTTTAATG--
* * * * * *
21911638 TTCTTTTTCTTTTTCTCTATCGTCGTTGTCGCCTACACCTTCCATTTTACCATCTCTTTCTTCTT
387 TT-TTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTT
* * * **
21911703 CTTTTTGTATCAAGATTGTGCTCCATCTCTTTTAATCTATTGATTCCATTTATCCTCATCTAAGC
451 CTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTTATCCTCATCTAAAT
* * *
21911768 CAGCACAAAATCTGAAATCTTAAACTCCAAGATCGATC
516 CAGCACCAAATCTGAAATCTTGAACTCCAAGATTGATC
* * *
21911806 CTGAACATTTCCAAGAAAGTGTCATTATCATTTCTCTCAACTAGCTTGGGTAAAAGCTCTTCTTT
1 CTGAACATTGCCAAGAAAGTGTCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTT
21911871 CTTCAATTTTTTTTATTAATCTTGCCAATTAAAAAACTAAATTTCCAGATTTGGAATTTGGGAGA
66 CTTCAATTTTTTTTATTAATCTTGCCAATTAAAAAACTAAATTTCCAGATTTGGAATTTGGGAGA
*
21911936 ATTTTTATGATTTTAAATATATTTTTTCAGTTTTTTAATGGGTTTTTAAATCATATTTAAATCAG
131 ATTTTGATGATTTTAAATATATTTTTTCAGTTTTTTAAT-GG-------ATC---TTTAAATC-G
* *
21912001 TCCCAAGTTGAAATCAGTCCCAAGTTGAAATCCCTTCTCTTGCAAATAATTTAATTTTTTGACAA
184 T----A-TTTAAATCAGTCCCAAGTTCAAATCCCTTCTCTTGCAAATAATTTAATTTTTTGACAA
* * *
21912066 TAACCCCTTGTTTTAATGTGTGTTTCATCCAAAACTAGTAAACCTAGGTATAAGTATTATTTTTT
244 -AACCCATTGTTTTAATGTGTGTGTCATCCAAGACTAGTAAACCTAGGTATAAGTATTATTTTTT
* * *
21912131 CACAAATAATCAGCCTTTAATCCTCCTCCTCTTTGCCCTACTCATTCCTCTCATCCTCTCTTTCT
308 CACAAATAATCAGCCTTTAATCCTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTCT
* * *
21912196 ATTTGATTTTAATGTTTTTTTCGTTTCCTCTATTGTTGTTGTCGCCTACACCTCCCATTTTATCA
373 ATTTGATTTTAATGTTTTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACCA
* *
21912261 TCTCTTTCTTCTTCTTTTTGCATCAAGATTGTGCACCGTCTCCTTTAATCTATTGCTTCCATTTA
438 TCTCTTTCTTCTTCTTTTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTTA
* * *
21912326 TCCTCATGTAAATCAGCACCAAATCTAAAATCTTGAACTGCAAGATTGATC
503 TCCTCATCTAAATCAGCACCAAATCTGAAATCTTGAACTCCAAGATTGATC
* * *
21912377 CTGAACATTACCAAGAAAGTGGCATTATCGTTTCTCTCAACTAGCTTGGGTAGGAGCTCTTCTTT
1 CTGAACATTGCCAAGAAAGTGTCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTT
* * * *
21912442 CTTCTATTTTTTTTATTAATCTTACCAATTAAAAACCTAAATTTCCAGATTTTGAATTTGGGAGA
66 CTTCAATTTTTTTTATTAATCTTGCCAATTAAAAAACTAAATTTCCAGATTTGGAATTTGGGAGA
* * * *
21912507 ATTTTTATGATTTTAAATATATTTTTTCACTTTTTTAATGGGTCTTTAAATCATATTTAAATCAG
131 ATTTTGATGATTTTAAATATATTTTTTCAGTTTTTTAATGGATCTTTAAATCGTATTTAAATCAG
* *
21912572 TCCCAAGTTGAAAT-CCTTCTCTTGCAAATAATTTAATTTTTTGACAAAAACCATTGTTTTAATG
196 TCCCAAGTTCAAATCCCTTCTCTTGCAAATAATTTAATTTTTTGACAAAACCCATTGTTTTAATG
*
21912636 TGTGTGTCGTCCAAGACTAGTAAACCTAGGTATAAGTATTATTTTTTTCACAAATAATCAGCCTT
261 TGTGTGTCATCCAAGACTAGTAAACCTAGGTATAAGTATTA-TTTTTTCACAAATAATCAGCCTT
* *
21912701 TAAAT-CTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTCTATTTTAGTTTAATGTT
325 T-AATCCTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTCTATTTGATTTTAATGTT
21912765 TTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTT
389 TTTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTT
* * *
21912830 TTTGTATCAAGATTGTGCACCATCTCCTTTAATTTATTGCTTCTATTTATCCTCATCTAAATCAA
454 TTTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTTATCCTCATCTAAATCAG
*
21912895 CACCAAATCTGAAATCTTGAACTCCAATATTGATC
519 CACCAAATCTGAAATCTTGAACTCCAAGATTGATC
* *
21912930 CTGAATATTGCCAAGAAAGTGTCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTGTTT
1 CTGAACATTGCCAAGAAAGTGTCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTT
* * * * *
21912995 CTTCAAATTTTTTTATTAATCTTGCCAATTAAATACCTAAATTTCCATATTTTGAATTTGGGAGA
66 CTTCAATTTTTTTTATTAATCTTGCCAATTAAAAAACTAAATTTCCAGATTTGGAATTTGGGAGA
*
21913060 ATTTTGATGATTTTAAATATATTTTTTCAG-TTTTTAATGGATCTTTAAATCGTA-TTAAATCAC
131 ATTTTGATGATTTTAAATATATTTTTTCAGTTTTTTAATGGATCTTTAAATCGTATTTAAATCAG
* *
21913123 TCCCAAGTTCAAATCCCTTCTCTTGCAAATAATTTAATTTTTTAACAAAAGCCTATTGTTTTAAT
196 TCCCAAGTTCAAATCCCTTCTCTTGCAAATAATTTAATTTTTTGACAAAA-CCCATTGTTTTAAT
* * *
21913188 GTGTGTTTCATCCAAGCCTAGTAAACCTAGGTATAAGTATTA-TTTTTCACAAATAATCAGTCTT
260 GTGTGTGTCATCCAAGACTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTT
* * * *
21913252 TAATCCTCCTCCTCATTTCCCTAGTCATTCCTCTCCTCCTTTTATTCTATTTGATTTTAAT-TTT
325 TAATCCTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTCTATTTGATTTTAATGTTT
* * * * * *
21913316 TTTTCCTTTCCTCCATGGTTATTGTCGCGTACACCTCCCCTTTTACCATATCCTTCTTCTTCTTT
390 TTTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTT
*
21913381 TTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTTATTCTCATCTAAATCAGC
455 TTGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTTATCCTCATCTAAATCAGC
* *
21913446 ACCAAATTTGAAGTCTTGAACT
520 ACCAAATCTGAAATCTTGAACT
21913468 GTAACACCCC
Statistics
Matches: 1508, Mismatches: 127, Indels: 58
0.89 0.08 0.03
Matches are distributed among these distances:
550 146 0.10
551 93 0.06
552 109 0.07
553 463 0.31
554 92 0.06
555 12 0.01
556 79 0.05
558 1 0.00
559 1 0.00
560 8 0.01
563 2 0.00
564 2 0.00
565 1 0.00
567 8 0.01
568 2 0.00
570 2 0.00
571 305 0.20
572 5 0.00
573 139 0.09
574 38 0.03
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (553 bp):
CTGAACATTGCCAAGAAAGTGTCATTATCGTTTCTCTCAACTAGCTTGGGTAAGAGCTCTTCTTT
CTTCAATTTTTTTTATTAATCTTGCCAATTAAAAAACTAAATTTCCAGATTTGGAATTTGGGAGA
ATTTTGATGATTTTAAATATATTTTTTCAGTTTTTTAATGGATCTTTAAATCGTATTTAAATCAG
TCCCAAGTTCAAATCCCTTCTCTTGCAAATAATTTAATTTTTTGACAAAACCCATTGTTTTAATG
TGTGTGTCATCCAAGACTAGTAAACCTAGGTATAAGTATTATTTTTTCACAAATAATCAGCCTTT
AATCCTCCTCCTCATTGCCCTACTCATTCCTCTCCTCCTCTCATTCTATTTGATTTTAATGTTTT
TTTCCTTTCCTCCATTGTTGTTGTCGCCTACACCTCCCATTTTACCATCTCTTTCTTCTTCTTTT
TGTATCAAGATTGTGCACCATCTCCTTTAATCTATTGCTTCCATTTATCCTCATCTAAATCAGCA
CCAAATCTGAAATCTTGAACTCCAAGATTGATC
Found at i:21914910 original size:104 final size:104
Alignment explanation
Indices: 21914788--21915011 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
21914778 AATGGATATC
21914788 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
21914853 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
21914892 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* * *
21914957 GGATCACGCACATAGCACCACCCATAAATCGGGGCATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
21914996 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
21915012 TTTATATACA
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:21915373 original size:29 final size:29
Alignment explanation
Indices: 21915340--21915403 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
21915330 TAATCCACCA
21915340 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
21915369 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
21915399 CCCAA
1 CCCAA
21915404 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:21915377 original size:30 final size:30
Alignment explanation
Indices: 21915347--21915403 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
21915337 CCACCCAACT
21915347 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
21915376 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
21915404 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:21919313 original size:25 final size:23
Alignment explanation
Indices: 21919264--21919314 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 23
21919254 TAAAAGAGAG
*
21919264 TGTGATATAATTAATATGTGATA
1 TGTGATATAATTAATATGTAATA
21919287 TGTGATATGAATATAATATG-AACTA
1 TGTGATAT-AAT-TAATATGTAA-TA
21919312 TGT
1 TGT
21919315 TAGGTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 8 0.33
24 4 0.17
25 12 0.50
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.41
Consensus pattern (23 bp):
TGTGATATAATTAATATGTAATA
Found at i:21919980 original size:20 final size:21
Alignment explanation
Indices: 21919942--21919981 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
21919932 AGTTGAAACG
*
21919942 AGAAAGAATTTGATGTGATAGT
1 AGAAAGAA-TTGATATGATAGT
21919964 AGAAAGAA-TGATATGATA
1 AGAAAGAATTGATATGATA
21919982 TGTTTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
22 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (21 bp):
AGAAAGAATTGATATGATAGT
Found at i:21924214 original size:18 final size:19
Alignment explanation
Indices: 21924187--21924228 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
21924177 ACTTTTTTCT
* *
21924187 TTTTATTTCCCCT-AAAAG
1 TTTTACTTCCCCTCAAAAA
21924205 TTTTACTTCCCCTCAAAAA
1 TTTTACTTCCCCTCAAAAA
21924224 TTTTA
1 TTTTA
21924229 GTTCTTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (19 bp):
TTTTACTTCCCCTCAAAAA
Found at i:21924541 original size:17 final size:17
Alignment explanation
Indices: 21924521--21924553 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21924511 TAAAAAAATC
21924521 ATAT-TTTTTTACATTTA
1 ATATATTTTTTA-ATTTA
21924538 ATATATTTTTTAATTT
1 ATATATTTTTTAATTT
21924554 CAAAATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATATTTTTTAATTTA
Found at i:21925545 original size:10 final size:10
Alignment explanation
Indices: 21925530--21925565 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
21925520 TAATTCTAGG
21925530 ATTTAT-TTT
1 ATTTATCTTT
21925539 CATTTATCTTT
1 -ATTTATCTTT
21925550 ATTTATCTTT
1 ATTTATCTTT
21925560 ATTTAT
1 ATTTAT
21925566 TTGTGATCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 22 0.88
11 3 0.12
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:21937743 original size:23 final size:23
Alignment explanation
Indices: 21937713--21937758 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
21937703 AGGACTGTAT
21937713 GATATTCTTTGATGTATTTTCTA
1 GATATTCTTTGATGTATTTTCTA
21937736 GATATTCTTTGATGTATTTTCTA
1 GATATTCTTTGATGTATTTTCTA
21937759 TGTAATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.57
Consensus pattern (23 bp):
GATATTCTTTGATGTATTTTCTA
Found at i:21939209 original size:20 final size:21
Alignment explanation
Indices: 21939172--21939210 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
21939162 TTCAGTTCAA
*
21939172 AGGGAGACCAAGAAAAGAAAG
1 AGGGAGAACAAGAAAAGAAAG
21939193 AGGGAGAACAA-AAAAGAA
1 AGGGAGAACAAGAAAAGAA
21939211 CAATTGCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00
Consensus pattern (21 bp):
AGGGAGAACAAGAAAAGAAAG
Found at i:21950696 original size:15 final size:16
Alignment explanation
Indices: 21950670--21950699 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
21950660 ATGGAAATGA
21950670 AATTTCTTTTTCTTTT
1 AATTTCTTTTTCTTTT
21950686 AATTT-TTTTTCTTT
1 AATTTCTTTTTCTTT
21950700 CCTACCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (16 bp):
AATTTCTTTTTCTTTT
Found at i:21953090 original size:58 final size:57
Alignment explanation
Indices: 21952940--21953090 Score: 153
Period size: 57 Copynumber: 2.6 Consensus size: 57
21952930 TATCGTTTAA
* *
21952940 CAGGATTACCAGTCCAGGCTAAATGCTTTATATAACGTATACTCAGGGGAGCTCAAT
1 CAGGATTACCAGTCCAGGCTAAATCCTTTTTATAACGTATACTCAGGGGAGCTCAAT
* * ** * * * *
21952997 TAGGATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCTCGAGAGGTA--TTACAT
1 CAGGATTACCAGTCCAGGCTAAATCCTTTTTATAACGTATACTC-AG-GGGAGCTCA-AT
* *
21953055 CGGGATTACCCGTCCAGGCTAAATCCTTTTTATAAC
1 CAGGATTACCAGTCCAGGCTAAATCCTTTTTATAAC
21953091 AAGGTCAATC
Statistics
Matches: 74, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
57 38 0.51
58 33 0.45
59 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCTTTTTATAACGTATACTCAGGGGAGCTCAAT
Found at i:21954997 original size:18 final size:18
Alignment explanation
Indices: 21954974--21955011 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
21954964 ATTCAGTGTA
21954974 AATAATCTAAAGAATTTG
1 AATAATCTAAAGAATTTG
21954992 AATAATCTAAAGAATTTG
1 AATAATCTAAAGAATTTG
21955010 AA
1 AA
21955012 GGAACAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (18 bp):
AATAATCTAAAGAATTTG
Found at i:21963151 original size:11 final size:11
Alignment explanation
Indices: 21963135--21963159 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21963125 ATTTTTAACA
21963135 TTTTATAATTT
1 TTTTATAATTT
21963146 TTTTATAATTT
1 TTTTATAATTT
21963157 TTT
1 TTT
21963160 AGTATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:21965494 original size:57 final size:58
Alignment explanation
Indices: 21965429--21965550 Score: 194
Period size: 57 Copynumber: 2.1 Consensus size: 58
21965419 TTCCAGGTCA
*
21965429 TTTTTCATTTTCATTTTGGAGAAAACCACATTT-ATTTCCAAATGTTTC-CATTTCTCC
1 TTTTTCATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAA-ATTTCTCATTTCTCC
*
21965486 TTTTTCATTTTCATTTTGGAGAAAACCATATTTCATTTCCAAAATTTCTCATTTCTCC
1 TTTTTCATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAAATTTCTCATTTCTCC
*
21965544 ATTTTCA
1 TTTTTCA
21965551 CCATTTTTGT
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
57 36 0.60
58 24 0.40
ACGTcount: A:0.25, C:0.20, G:0.06, T:0.48
Consensus pattern (58 bp):
TTTTTCATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAAATTTCTCATTTCTCC
Found at i:21979970 original size:18 final size:17
Alignment explanation
Indices: 21979947--21979980 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21979937 CTTTGACGAA
21979947 ATTAATAAATTTATAATC
1 ATTAATAAATTT-TAATC
*
21979965 ATTAATATATTTTAAT
1 ATTAATAAATTTTAAT
21979981 TATATTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTAATAAATTTTAATC
Found at i:21982647 original size:27 final size:28
Alignment explanation
Indices: 21982595--21982648 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
21982585 TCTCAAAAAA
*
21982595 AATTTCTTTTGATTTTATTTTCAATTTT
1 AATTTCTTTTGATTTTATTCTCAATTTT
21982623 AATTT-TTTTGATTTTGATTCT-AATTT
1 AATTTCTTTTGATTTT-ATTCTCAATTT
21982649 ATTTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.22, C:0.06, G:0.06, T:0.67
Consensus pattern (28 bp):
AATTTCTTTTGATTTTATTCTCAATTTT
Found at i:21986427 original size:11 final size:13
Alignment explanation
Indices: 21986402--21986431 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
21986392 ACCAATTTTA
21986402 ATATTAATTATAT
1 ATATTAATTATAT
*
21986415 ATATTAATAATAT
1 ATATTAATTATAT
21986428 ATAT
1 ATAT
21986432 GAGGGTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATTAATTATAT
Found at i:21990033 original size:27 final size:27
Alignment explanation
Indices: 21989932--21990036 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
21989922 AGGAAGCGTC
* *
21989932 CTGGTGGCTATGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
21989959 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
21989986 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
21990014 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
21990037 TTTCTGGCAG
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.74
28 17 0.24
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:21990036 original size:54 final size:54
Alignment explanation
Indices: 21989932--21990043 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
21989922 AGGAAGCGTC
*
21989932 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
21989986 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTTTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
21990040 CTGG
1 CTGG
21990044 CAGCCACGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:21992121 original size:26 final size:26
Alignment explanation
Indices: 21992092--21992250 Score: 230
Period size: 26 Copynumber: 6.2 Consensus size: 26
21992082 TGGTGCAAAT
21992092 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
21992118 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
21992144 -GATGATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
21992169 TGATAATGGATTAGGCAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
21992195 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
21992221 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21992247 TGAT
1 TGAT
21992251 GGGCATTTCA
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
25 21 0.18
26 94 0.82
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:21992157 original size:51 final size:52
Alignment explanation
Indices: 21992092--21992250 Score: 257
Period size: 52 Copynumber: 3.1 Consensus size: 52
21992082 TGGTGCAAAT
*
21992092 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
21992144 -GATGATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGCAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
21992195 TGATAATGGGTTAGGTAAATGTTCTATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
21992247 TGAT
1 TGAT
21992251 GGGCATTTCA
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
51 48 0.49
52 50 0.51
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:21993764 original size:26 final size:26
Alignment explanation
Indices: 21993734--21993786 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21993724 TTTATAGTTT
21993734 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
21993760 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
21993786 T
1 T
21993787 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:22000279 original size:25 final size:26
Alignment explanation
Indices: 22000238--22000343 Score: 180
Period size: 25 Copynumber: 4.2 Consensus size: 26
22000228 ATGTACAAAT
22000238 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
22000264 TGATAAT-GGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22000289 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
22000314 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22000340 TGAT
1 TGAT
22000344 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
25 48 0.64
26 27 0.36
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:22000298 original size:51 final size:51
Alignment explanation
Indices: 22000238--22000343 Score: 187
Period size: 51 Copynumber: 2.1 Consensus size: 51
22000228 ATGTACAAAT
22000238 TGATAATGGGTTAGGTAAATGTTCCATGATAATGG-TTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTT-CATGATAATGGTTTAGGTAAATATTCCA
*
22000289 TGATAATGGGTTAGGTAAATGTTCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCATGATAATGGTTTAGGTAAATATTCCA
22000340 TGAT
1 TGAT
22000344 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
50 11 0.21
51 42 0.79
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCATGATAATGGTTTAGGTAAATATTCCA
Found at i:22005346 original size:3 final size:3
Alignment explanation
Indices: 22005340--22005418 Score: 65
Period size: 3 Copynumber: 25.7 Consensus size: 3
22005330 TGTTGTTGTC
* *
22005340 ATT ATT ATT ATT CCTG ATT -TT ATT ATT ATT CATGT ATT ATT ATT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT -AT-T ATT ATT ATT ATT
*
22005387 CTT CATT -TT CATT ATT ATT ATT ATT ATT -TT AT
1 ATT -ATT ATT -ATT ATT ATT ATT ATT ATT ATT AT
22005419 GCTTTCATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
2 6 0.10
3 46 0.74
4 9 0.15
5 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:22005384 original size:35 final size:34
Alignment explanation
Indices: 22005340--22005418 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 34
22005330 TGTTGTTGTC
*
22005340 ATTATTATTATTCCTGATTTT-ATTATTATTCATGT
1 ATTATTATTATTCCTCATTTTCATTATTATT-AT-T
*
22005375 ATTATTATTATTCTTCATTTTCATTATTATTATT
1 ATTATTATTATTCCTCATTTTCATTATTATTATT
22005409 ATTATT-TTAT
1 ATTATTATTAT
22005419 GCTTTCATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 21 0.51
36 9 0.22
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.63
Consensus pattern (34 bp):
ATTATTATTATTCCTCATTTTCATTATTATTATT
Found at i:22005438 original size:36 final size:36
Alignment explanation
Indices: 22005340--22005440 Score: 102
Period size: 35 Copynumber: 2.8 Consensus size: 36
22005330 TGTTGTTGTC
* * *
22005340 ATTATTATTATTCCTGATTTT-ATTATTATTCATGT
1 ATTATTATTATGCTTCATTTTCATTATTATTCATGT
*
22005375 ATTATTATTATTCTTCATTTTCATTATTATT-AT-T
1 ATTATTATTATGCTTCATTTTCATTATTATTCATGT
*
22005409 ATTATT-TTATGCTTTCATATTTACTTTATTAT
1 ATTATTATTATGC-TTCAT-TTT-CATTATTAT
22005441 ATATACATTC
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
33 5 0.09
34 12 0.21
35 24 0.41
36 17 0.29
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.62
Consensus pattern (36 bp):
ATTATTATTATGCTTCATTTTCATTATTATTCATGT
Found at i:22010201 original size:48 final size:48
Alignment explanation
Indices: 22010146--22010466 Score: 284
Period size: 48 Copynumber: 6.7 Consensus size: 48
22010136 AGGGTGAATT
* * *
22010146 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
22010194 GCCGATGCCATGTCCCAAATATGGTCTTACACTAGCTCTCGTCTC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA-G
* * * * * * ** *
22010242 TCCGGTGCAATGTCCCAGACATGGTCTTACGCTGGCTCTCATAAGGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
** * * * *
22010290 GCCGATGCCATGTCCCAGACATTATCTTACACTAGCGCATATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * * *
22010338 GCCGATGCTATGTCCTAGACATGGTCTTACACTGGCTCTCATGTTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
22010386 GCTGATGCTATGTCTCAGACATGGTCTTACACTAGCACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
*
22010434 GCAGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
22010467 GGCACTCATG
Statistics
Matches: 210, Mismatches: 61, Indels: 4
0.76 0.22 0.01
Matches are distributed among these distances:
47 1 0.00
48 209 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
Found at i:22010351 original size:96 final size:96
Alignment explanation
Indices: 22010145--22010478 Score: 382
Period size: 96 Copynumber: 3.5 Consensus size: 96
22010135 GAGGGTGAAT
* * * * *
22010145 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
* * * * * *
22010210 AAATATGGTCTTACACTAGCTC-TCGTCTCAT
66 AGACATGGTCTTACACTAGCACAT-ATATCAA
* * * * ***
22010241 TTCCGGTGCAATGTCCCAGACATGGTCTTACGCTGGCTCTCATAAGGTGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
** *
22010306 AGACATTATCTTACACTAGCGCATATATCAA
66 AGACATGGTCTTACACTAGCACATATATCAA
* * * * * *
22010337 TGCCGATGCTATGTCCTAGACATGGTCTTACACTGGCTCTCATGTTGTGGCTGATGCTATGTCTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
*
22010402 AGACATGGTCTTACACTAGCACACATATCAA
66 AGACATGGTCTTACACTAGCACATATATCAA
* *
22010433 TGCAGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTC
22010479 ACCCAAATGT
Statistics
Matches: 197, Mismatches: 40, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
96 196 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
AGACATGGTCTTACACTAGCACATATATCAA
Found at i:22010406 original size:144 final size:144
Alignment explanation
Indices: 22010146--22010415 Score: 324
Period size: 144 Copynumber: 1.9 Consensus size: 144
22010136 AGGGTGAATT
* * * * *
22010146 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGATCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCA
* * ** *
22010211 AATATGGTCTTACACTAGCTCTCGTCTCATTTCCGGTGCAATGTCCCAGACATGGTCTTACGCTG
66 AACATGGTCTTACACTAGCTCTCATCTCATGGCCGATGCAATGTCCCAGACATGGTCTTACGCTG
22010276 GCTCTCATAAGGTG
131 GCTCTCATAAGGTG
* * * * * *
22010290 GCCGATGCCATGTCCCAGACATTATCTTACACTAGCGCATATATCAATGCCGATGCTATGTCCTA
1 GCCGATGCCATGTCCCAAACATGATCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCA
* * * ** * * *
22010355 GACATGGTCTTACACTGGCTCTCATGTTGTGGCTGATGCTATGTCTCAGACATGGTCTTAC
66 AACATGGTCTTACACTAGCTCTCATCTCATGGCCGATGCAATGTCCCAGACATGGTCTTAC
22010416 ACTAGCACAC
Statistics
Matches: 102, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
144 102 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAAACATGATCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCTCTCATCTCATGGCCGATGCAATGTCCCAGACATGGTCTTACGCTG
GCTCTCATAAGGTG
Found at i:22011496 original size:28 final size:28
Alignment explanation
Indices: 22011465--22011549 Score: 170
Period size: 28 Copynumber: 3.0 Consensus size: 28
22011455 TAGCTAGTAG
22011465 AACAAAACTTTCGCACTTTATGCGATTT
1 AACAAAACTTTCGCACTTTATGCGATTT
22011493 AACAAAACTTTCGCACTTTATGCGATTT
1 AACAAAACTTTCGCACTTTATGCGATTT
22011521 AACAAAACTTTCGCACTTTATGCGATTT
1 AACAAAACTTTCGCACTTTATGCGATTT
22011549 A
1 A
22011550 GTCTTTTTTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (28 bp):
AACAAAACTTTCGCACTTTATGCGATTT
Found at i:22018099 original size:48 final size:48
Alignment explanation
Indices: 22017975--22018254 Score: 269
Period size: 48 Copynumber: 5.9 Consensus size: 48
22017965 GGGTGAATTA
* * ** * *
22017975 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCAAATGTCGA-GG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-GATTG
** *
22018023 CCGAT-CCATGTCCTTGACATGGTCTTACACTAGCTCTCGTCTGATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
* * * * * * *
22018070 CTGATGGCATGTCCCAGACATGGCCTTACACTGGCTCTCATATGGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
* * * ** *
22018118 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATGTTCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
* * * *
22018166 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACA-CATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TGATTG
* *
22018214 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
22018255 ATTACCCAGA
Statistics
Matches: 190, Mismatches: 38, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
46 2 0.01
47 34 0.18
48 154 0.81
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
Found at i:22018234 original size:144 final size:143
Alignment explanation
Indices: 22017975--22018256 Score: 361
Period size: 144 Copynumber: 2.0 Consensus size: 143
22017965 GGGTGAATTA
* **
22017975 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCAAATGTCGAGGCCGATCCATGTCCTTGA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAAATGTCGAGGCCGATCCATGTCCCAGA
* * * * * * *
22018040 CATGGTCTTACACTAGCTCTCGTCTGATTGCTGATGGCATGTCCCAGACATGGCCTTACACTGGC
66 CATGGTCTTACACTAGCACACGACTCAATGCCGATGCCATGTCCCAGACATGGCCTTACACTGGC
*
22018105 TCTCATATGGTGG
131 ACTCATATGGTGG
* * * ** *
22018118 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATGTTCTA-GCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAAATG-TCGAGGCCGAT-CCATGTCCCA
*
22018182 GACATGGTCTTACACTAGCACAC-ACATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
64 GACATGGTCTTACACTAGCACACGAC-TCAATGCCGATGCCATGTCCCAGACATGGCCTTACACT
22018246 GGCACTCATAT
128 GGCACTCATAT
22018257 TACCCAGATG
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
143 43 0.36
144 75 0.64
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (143 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAAATGTCGAGGCCGATCCATGTCCCAGA
CATGGTCTTACACTAGCACACGACTCAATGCCGATGCCATGTCCCAGACATGGCCTTACACTGGC
ACTCATATGGTGG
Found at i:22020078 original size:21 final size:21
Alignment explanation
Indices: 22020052--22020092 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22020042 TCTTAGGGCA
* *
22020052 CAGGCGTTTGGGGTGGCCACT
1 CAGGCGTGTGGAGTGGCCACT
22020073 CAGGCGTGTGGAGTGGCCAC
1 CAGGCGTGTGGAGTGGCCAC
22020093 ACGGCCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.20
Consensus pattern (21 bp):
CAGGCGTGTGGAGTGGCCACT
Found at i:22022558 original size:49 final size:50
Alignment explanation
Indices: 22022337--22022568 Score: 184
Period size: 51 Copynumber: 4.6 Consensus size: 50
22022327 GTTGTGAGAA
* * *
22022337 CACATGTGTAGTACTATA-TGCAGGCTACTATATGT-TTAAA-ATGGTTTTTGGT
1 CACATGTGTAGTACTA-AGTGCAGGCTAC--TACGTATAAAAGATGG--TTAGGT
* * ** * * * *
22022389 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAACAGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTATAAAAGAT-GGTTAGGT
* * * **
22022440 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTATAAAAGATGGTTAGGT
* * *
22022490 CACGTGTGTAGTACCAAGTGCAGGCTACTAC-TATAAAAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTATAAAAGATGGTTAGGT
***
22022539 TGTATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
22022569 TGCGTACTAG
Statistics
Matches: 151, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
49 39 0.26
50 38 0.25
51 46 0.30
52 27 0.18
53 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTATAAAAGATGGTTAGGT
Found at i:22036010 original size:39 final size:39
Alignment explanation
Indices: 22035956--22036074 Score: 202
Period size: 39 Copynumber: 3.1 Consensus size: 39
22035946 TTGGGTATTA
22035956 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
1 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
* *
22035995 GTCCGTACGTCCTACCAGTGGTTGAGTTATTCAGCTTGT
1 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
* *
22036034 GGCCGTACGTCCTACCGGTGGTTGAGTTATCCAGCATGT
1 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
22036073 GT
1 GT
22036075 TACGGATACT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.15, C:0.24, G:0.29, T:0.33
Consensus pattern (39 bp):
GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
Found at i:22046613 original size:68 final size:67
Alignment explanation
Indices: 22046541--22046690 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
22046531 CATCATGTGT
* * * *
22046541 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
22046603 ATGTAG
62 ATGTAG
** * *
22046609 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
22046674 AG
66 AG
22046676 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
22046691 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:22046646 original size:64 final size:64
Alignment explanation
Indices: 22046565--22046748 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
22046555 AGACATTATG
* *
22046565 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
22046629 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
22046694 AA
63 AA
* * * *
22046696 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
22046749 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:22053961 original size:105 final size:105
Alignment explanation
Indices: 22053779--22053984 Score: 360
Period size: 105 Copynumber: 2.0 Consensus size: 105
22053769 GAGCAAGCTT
* *
22053779 AGGCACATATAAAACATAGTCAAATCACGAAATCAAGGGGTCAAGTAACACTCACCGACCCTACA
1 AGGCAAATATAAAACATAGTAAAATCACGAAATCAAGGGGTCAAGTAACACTCACCGACCCTACA
22053844 ATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACATGCTA
66 ATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACATGCTA
* *
22053884 AGGCAAATATAAAACATAGTAAAATCGCGAAATC-AGGAGGTCAAGTAACTCTCACCGACCCTAC
1 AGGCAAATATAAAACATAGTAAAATCACGAAATCAAGG-GGTCAAGTAACACTCACCGACCCTAC
22053948 AATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACAT
65 AATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACAT
22053985 TCAGAGTGTT
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
104 3 0.03
105 93 0.97
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17
Consensus pattern (105 bp):
AGGCAAATATAAAACATAGTAAAATCACGAAATCAAGGGGTCAAGTAACACTCACCGACCCTACA
ATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACATGCTA
Found at i:22059694 original size:17 final size:18
Alignment explanation
Indices: 22059661--22059694 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22059651 GGCGTCTCTC
*
22059661 TAGTATCCAGATTCAAAA
1 TAGTATCCAGATACAAAA
22059679 TAGTAT-CAGATACAAA
1 TAGTATCCAGATACAAA
22059695 TGACTCAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (18 bp):
TAGTATCCAGATACAAAA
Found at i:22061219 original size:105 final size:105
Alignment explanation
Indices: 22061037--22061232 Score: 347
Period size: 105 Copynumber: 1.9 Consensus size: 105
22061027 AATCGGTGAG
* *
22061037 CATGCTAAGGAACGTATAAAACATAGTCAAATCACGAAATTAGGAGGTCAAGTAACTCTCATCGA
1 CATGCTAAGGAACGTATAAAACATAGTCAAATCACGAAATCAGGAGGTCAAGTAACTCTCACCGA
22061102 CCCTACAATAGGTCCCAGTCAACTTGGGCGACCCAAGCAA
66 CCCTACAATAGGTCCCAGTCAACTTGGGCGACCCAAGCAA
* *
22061142 CATGCTAAGGCACGTATAAAACATAGTCAAATCACGAAATCAGGGGGTCAAGTAACTCTCACCGA
1 CATGCTAAGGAACGTATAAAACATAGTCAAATCACGAAATCAGGAGGTCAAGTAACTCTCACCGA
*
22061207 CCCTACAATAGGTCCCAGTTAACTTG
66 CCCTACAATAGGTCCCAGTCAACTTG
22061233 TGGATCACAC
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 86 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (105 bp):
CATGCTAAGGAACGTATAAAACATAGTCAAATCACGAAATCAGGAGGTCAAGTAACTCTCACCGA
CCCTACAATAGGTCCCAGTCAACTTGGGCGACCCAAGCAA
Found at i:22063600 original size:11 final size:11
Alignment explanation
Indices: 22063564--22063619 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
22063554 CATGGTATGT
22063564 ATGATATGCAC
1 ATGATATGCAC
* *
22063575 ATGACATG--T
1 ATGATATGCAC
22063584 ATGATATGCAC
1 ATGATATGCAC
*
22063595 ATGATATG--T
1 ATGATATGCAC
22063604 ATGATATGCAC
1 ATGATATGCAC
22063615 ATGAT
1 ATGAT
22063620 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22063619 original size:20 final size:20
Alignment explanation
Indices: 22063553--22063619 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
22063543 ATTTTGATAA
*
22063553 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22063573 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
22063593 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22063613 ACATGAT
1 ACATGAT
22063620 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22063696 original size:24 final size:24
Alignment explanation
Indices: 22063669--22063786 Score: 143
Period size: 23 Copynumber: 5.0 Consensus size: 24
22063659 GAGGAAGTGA
22063669 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATT
22063693 AAAA-GGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATT
*
22063716 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATT
* * *
22063739 AAAAGGGATTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATT
* *
22063763 CAAAGAGGC-TAGGCCTCTAGTTAT
1 AAAAG-GGCTTATGCC-CTAGTTAT
22063787 ATGATAAAGC
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
22 3 0.04
23 37 0.45
24 33 0.40
25 9 0.11
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCTAGTTATT
Found at i:22066631 original size:14 final size:14
Alignment explanation
Indices: 22066612--22066640 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22066602 ACAACTTTCC
22066612 TATTAATACGTGAA
1 TATTAATACGTGAA
22066626 TATTAATACGTGAA
1 TATTAATACGTGAA
22066640 T
1 T
22066641 TTTTTTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (14 bp):
TATTAATACGTGAA
Found at i:22074985 original size:46 final size:46
Alignment explanation
Indices: 22074835--22075009 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
22074825 TGTAACCCGC
* * * *
22074835 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
22074881 CCATAGGTGAACTCAGACTCAACTCAAC-AGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * *
22074930 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
22074973 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22075010 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 8 0.08
46 74 0.70
47 9 0.09
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:22075000 original size:92 final size:93
Alignment explanation
Indices: 22074843--22075012 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
22074833 GCCCATAAGT
* * * *
22074843 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
22074908 C-AGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
22074935 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
22075000 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22075013 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 60 0.85
93 11 0.15
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:22077183 original size:18 final size:18
Alignment explanation
Indices: 22077160--22077196 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
22077150 TCCAATAACT
22077160 TCATCAATTTAATTATAC
1 TCATCAATTTAATTATAC
22077178 TCATCAATTTAATTATAC
1 TCATCAATTTAATTATAC
22077196 T
1 T
22077197 TGAATTGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.46
Consensus pattern (18 bp):
TCATCAATTTAATTATAC
Found at i:22081615 original size:26 final size:26
Alignment explanation
Indices: 22081572--22081643 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 26
22081562 AACAACCATT
* * *
22081572 AAAATAATAAAAAAATAACAATGT-TC
1 AAAATAA-AATAAAATAAAAAGGTCTC
*
22081598 AAAATAGAAATAACATAAAAAGGTCTC
1 AAAATA-AAATAAAATAAAAAGGTCTC
*
22081625 ACAATAAAATAAAATAAAA
1 AAAATAAAATAAAATAAAA
22081644 TAACTAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
26 30 0.79
27 8 0.21
ACGTcount: A:0.67, C:0.08, G:0.06, T:0.19
Consensus pattern (26 bp):
AAAATAAAATAAAATAAAAAGGTCTC
Found at i:22083365 original size:15 final size:15
Alignment explanation
Indices: 22083308--22083369 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
22083298 ATAGATAGAT
*
22083308 ATAATAATACTAAAA
1 ATAATAATAATAAAA
*
22083323 ATAA-AACTACTAAAATA
1 ATAATAA-TAAT-AAA-A
22083340 GATACATAATAATAAAA
1 -ATA-ATAATAATAAAA
22083357 ATAATAATAATAA
1 ATAATAATAATAA
22083370 TTAAAACAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
14 2 0.05
15 18 0.45
16 6 0.15
17 2 0.05
18 6 0.15
19 4 0.10
20 2 0.05
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.26
Consensus pattern (15 bp):
ATAATAATAATAAAA
Found at i:22083368 original size:18 final size:21
Alignment explanation
Indices: 22083334--22083375 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
22083324 TAAAACTACT
22083334 AAAATAGATACATAATAA-TA
1 AAAATAGATACATAATAATTA
22083354 AAAATA-ATA-ATAATAATTA
1 AAAATAGATACATAATAATTA
22083373 AAA
1 AAA
22083376 CAAAAGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 8 0.38
20 6 0.29
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAATAGATACATAATAATTA
Found at i:22089080 original size:42 final size:42
Alignment explanation
Indices: 22089021--22089108 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
22089011 AGTTTTTGAG
*
22089021 ACATTTAATTATTAATTCTGCTAAACCATTTTATACGTATGA
1 ACATTTAATTATTAATTCTGCTAAACCATTTTATACATATGA
22089063 ACATTTAATTATTAATTCTGCTAAACCATTTTATACATATGA
1 ACATTTAATTATTAATTCTGCTAAACCATTTTATACATATGA
22089105 ACAT
1 ACAT
22089109 CAGGCTTTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.42
Consensus pattern (42 bp):
ACATTTAATTATTAATTCTGCTAAACCATTTTATACATATGA
Found at i:22091494 original size:46 final size:47
Alignment explanation
Indices: 22091389--22091702 Score: 166
Period size: 46 Copynumber: 6.6 Consensus size: 47
22091379 ATTGTGAACT
* * * * * *
22091389 AGTGTAAGACCATG-CTTGGGACATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGACCATGTC-TGGGACAT-GCATCAGCCTCGAGATGTA-AGCC
22091437 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
* * * *
22091483 AGTGAAAGA-CATGTCTGGGACATACATC-GGCTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCT-CGAGATGTAAGCC
* * * * *
22091527 AGTGTAAGACCATGTCTGGGATATGGTATCAGCAC-GGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGC-CTCGAGATGT-A-AGCC
* * ** ** *
22091577 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAATAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGAGATGTA-AGCC
* * * *
22091626 AATGTAAGACCATGTCTGGG-CTATGGCATC-GACTTGATGGATG--AGCT
1 AGTGTAAGACCATGTCTGGGAC-AT-GCATCAGCCTCGA--GATGTAAGCC
*
22091673 AGTGTAAGATCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC
22091703 GACATTATAC
Statistics
Matches: 209, Mismatches: 41, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.05
45 16 0.08
46 58 0.28
47 42 0.20
48 18 0.09
49 30 0.14
50 35 0.17
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
Found at i:22091641 original size:99 final size:96
Alignment explanation
Indices: 22091524--22091699 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
22091514 TACGAGATGT
* *
22091524 GTCAGTGTAAGACCATGTCTGGGATATGGTATCAGCACGGAT-ATGTGA-GAGCTAGTGTAAGAC
1 GTCAATGTAAGACCATGTCTGGGATATGGCATC-G-AC--ATGATG-GATGAGCTAGTGTAAGAC
22091587 CATGTCTGGGACATGGCGTCGGCCTCGATTTCAATA
61 CATGTCTGGGACATGGCGTCGGCCTCGATTTCAATA
* * *
22091623 GTCAATGTAAGACCATGTCTGGGCTATGGCATCGACTTGATGGATGAGCTAGTGTAAGATCATGT
1 GTCAATGTAAGACCATGTCTGGGATATGGCATCGACATGATGGATGAGCTAGTGTAAGACCATGT
22091688 CTGGGACATGGC
66 CTGGGACATGGC
22091700 ATCGACATTA
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
95 3 0.04
96 34 0.49
97 2 0.03
98 1 0.01
99 30 0.43
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (96 bp):
GTCAATGTAAGACCATGTCTGGGATATGGCATCGACATGATGGATGAGCTAGTGTAAGACCATGT
CTGGGACATGGCGTCGGCCTCGATTTCAATA
Found at i:22096271 original size:2 final size:2
Alignment explanation
Indices: 22096264--22096306 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
22096254 GATAATTATA
22096264 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22096306 C
1 C
22096307 ACACACACAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:22096311 original size:2 final size:2
Alignment explanation
Indices: 22096306--22096333 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22096296 CTCTCTCTCT
22096306 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
22096334 GTCTCTCCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:22096651 original size:18 final size:20
Alignment explanation
Indices: 22096612--22096654 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
22096602 TTAAATTATT
*
22096612 AATATATGAGAGGGACCAAA
1 AATATATGAAAGGGACCAAA
*
22096632 AATATATGAAAGGGACAAAA
1 AATATATGAAAGGGACCAAA
22096652 AAT
1 AAT
22096655 GCAAATTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.07, G:0.21, T:0.16
Consensus pattern (20 bp):
AATATATGAAAGGGACCAAA
Found at i:22098906 original size:31 final size:31
Alignment explanation
Indices: 22098862--22098943 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 31
22098852 AAAAAAATGA
* *
22098862 TATCTA-AATTTAAAAT-TTTAATTAAAAAT
1 TATCTATAATTTAAAATATTAAATTAAAAAC
22098891 TATCTATAATATT-AAATATTAAATTAAAAAC
1 TATCTATAAT-TTAAAATATTAAATTAAAAAC
* *
22098922 TATATATATTTTTAAAA-ATTAA
1 TATCTATA-ATTTAAAATATTAA
22098944 CATGGACAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 6 0.14
30 7 0.16
31 27 0.61
32 4 0.09
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (31 bp):
TATCTATAATTTAAAATATTAAATTAAAAAC
Found at i:22099255 original size:21 final size:21
Alignment explanation
Indices: 22099230--22099270 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22099220 TTAAAATTAA
22099230 TTATTAAACTTCAAAATATTT
1 TTATTAAACTTCAAAATATTT
**
22099251 TTATTAAACTTTTAAATATT
1 TTATTAAACTTCAAAATATT
22099271 GATTAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (21 bp):
TTATTAAACTTCAAAATATTT
Found at i:22099844 original size:92 final size:90
Alignment explanation
Indices: 22099686--22099902 Score: 220
Period size: 92 Copynumber: 2.4 Consensus size: 90
22099676 CCTCAAATTT
* * * * **
22099686 TTTTAAAAAAGAAGTAATTAAG-CTCTTCTTTTTTTTTTCACTCAATTGGATATTTAAACTTTCA
1 TTTTCAAAAA-AAGCAATTAAGCCCCTTCTTTTTTTTTTCACTCAATTGGATACTTAAACTACCA
* * * * **
22099750 AAATACATTAAAAAGACTCTCAAACT
65 AAATACATAAAAAAAACCCTAAAAAA
* * *
22099776 TTTTCAAAAACAGCAATTAAGCCCCTTACTTTTTTTTTCTCACTCAATTGGTTACTTGAACTACC
1 TTTTCAAAAAAAGCAATTAAGCCCCTT-CTTTTTTTTT-TCACTCAATTGGATACTTAAACTACC
* *
22099841 AAAATGCGTAAAAAAAACCCTAAAAAA
64 AAAATACATAAAAAAAACCCTAAAAAA
* * *
22099868 TTTTCAAAAAAAGCAATTAAACCCCTGCCTTTTTT
1 TTTTCAAAAAAAGCAATTAAGCCCCTTCTTTTTTT
22099903 GCACTCAATT
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
89 9 0.09
90 13 0.13
91 17 0.17
92 64 0.62
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (90 bp):
TTTTCAAAAAAAGCAATTAAGCCCCTTCTTTTTTTTTTCACTCAATTGGATACTTAAACTACCAA
AATACATAAAAAAAACCCTAAAAAA
Found at i:22099973 original size:20 final size:20
Alignment explanation
Indices: 22099937--22099974 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22099927 AAAAAGTCCT
*
22099937 TTGACCGTAAACTTTAACAG
1 TTGACCGTAAACGTTAACAG
22099957 TTGACCGTTAAA-GTTAAC
1 TTGACCG-TAAACGTTAAC
22099975 TGCATCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (20 bp):
TTGACCGTAAACGTTAACAG
Found at i:22100086 original size:18 final size:18
Alignment explanation
Indices: 22100047--22100106 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
22100037 AAAACTATAA
* *
22100047 AAAAATATAAAATAGTAA
1 AAAAATATAAAATATTAT
*
22100065 AAAAATATAAAATTTTAT
1 AAAAATATAAAATATTAT
22100083 AAAAATTATAAAAATATTAT
1 AAAAA-TAT-AAAATATTAT
22100103 AAAA
1 AAAA
22100107 TTCATCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
18 20 0.56
19 3 0.08
20 13 0.36
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AAAAATATAAAATATTAT
Found at i:22100107 original size:10 final size:10
Alignment explanation
Indices: 22100042--22100107 Score: 57
Period size: 10 Copynumber: 6.8 Consensus size: 10
22100032 ACAAAAAAAC
* *
22100042 TATAAAAAAA
1 TATAAAATAT
*
22100052 TATAAAATAG
1 TATAAAATAT
*
22100062 TA-AAAA-AA
1 TATAAAATAT
*
22100070 TATAAAATTT
1 TATAAAATAT
22100080 TATAAAA-AT
1 TATAAAATAT
22100089 TATAAAAATAT
1 TAT-AAAATAT
22100100 TATAAAAT
1 TATAAAAT
22100108 TCATCAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 3 0.07
9 12 0.26
10 26 0.57
11 5 0.11
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
TATAAAATAT
Found at i:22100378 original size:9 final size:8
Alignment explanation
Indices: 22100366--22100465 Score: 58
Period size: 9 Copynumber: 11.1 Consensus size: 8
22100356 ATAAATTATA
22100366 TATATTTT
1 TATATTTT
22100374 CTATATTTCT
1 -TATATTT-T
22100384 ATATATTTT
1 -TATATTTT
22100393 ATAATATTTT
1 -T-ATATTTT
22100403 TATGATTTT
1 TAT-ATTTT
*
22100412 TATAAAATTT
1 TAT--ATTTT
*
22100422 AATAATTTT
1 TAT-ATTTT
22100431 TATAATTTT
1 TAT-ATTTT
22100440 TATTGATTTT
1 TA-T-ATTTT
22100450 TAT-TTTT
1 TATATTTT
*
22100457 TATCTTTT
1 TATATTTT
22100465 T
1 T
22100466 TTGCCATATG
Statistics
Matches: 78, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
7 7 0.09
8 7 0.09
9 35 0.45
10 29 0.37
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (8 bp):
TATATTTT
Found at i:22100390 original size:10 final size:9
Alignment explanation
Indices: 22100353--22100415 Score: 58
Period size: 9 Copynumber: 6.9 Consensus size: 9
22100343 TTCTTACGGC
*
22100353 TTTATAAAT
1 TTTATATAT
*
22100362 TATATATAT
1 TTTATATAT
*
22100371 TTTCTATAT
1 TTTATATAT
22100380 TTCTATATAT
1 TT-TATATAT
22100390 TTTATAATAT
1 TTTAT-ATAT
22100400 TTT-TATGAT
1 TTTATAT-AT
22100409 TTT-TATA
1 TTTATATA
22100416 AAATTTAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
8 3 0.07
9 28 0.61
10 15 0.33
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTATATAT
Found at i:22100401 original size:20 final size:20
Alignment explanation
Indices: 22100364--22100421 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
22100354 TTATAAATTA
*
22100364 TATATATTTTCT-ATATTTC
1 TATATATTTTATAATATTTC
*
22100383 TATATATTTTATAATATTTT
1 TATATATTTTATAATATTTC
*
22100403 TATGAT-TTTTATAAAATTT
1 TAT-ATATTTTATAATATTT
22100422 AATAATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 11 0.32
20 21 0.62
21 2 0.06
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (20 bp):
TATATATTTTATAATATTTC
Found at i:22100441 original size:19 final size:19
Alignment explanation
Indices: 22100389--22100452 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
22100379 TTTCTATATA
*
22100389 TTTTATAATATTTTTATGAT
1 TTTTATAAT-TTTTAATGAT
** *
22100409 TTTTATAAAATTTAATAAT
1 TTTTATAATTTTTAATGAT
*
22100428 TTTTATAATTTTTATTGAT
1 TTTTATAATTTTTAATGAT
22100447 TTTTAT
1 TTTTAT
22100453 TTTTTATCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 28 0.78
20 8 0.22
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTATAATTTTTAATGAT
Found at i:22101516 original size:31 final size:30
Alignment explanation
Indices: 22101473--22101644 Score: 145
Period size: 31 Copynumber: 5.6 Consensus size: 30
22101463 AGAATTAATC
*
22101473 ATATTAATATTAAATTAACAAAATATTATCT
1 ATATAAATATTAAATTAA-AAAATATTATCT
* *
22101504 AGATAAATATTAAATTAAATTAAGTA-TAT-T
1 ATATAAATATTAAATTAAA--AAATATTATCT
* * *
22101534 ATATTAATATTTAATTAATAAAATACTATCT
1 ATATAAATATTAAATTAA-AAAATATTATCT
* * *
22101565 ATCTAAATATTAAATTAAATTTAATATCA-C-
1 ATATAAATATTAAATTAAA--AAATATTATCT
* *
22101595 ATATTAACATTAAATTAATAAAATATTATCT
1 ATATAAATATTAAATTAA-AAAATATTATCT
*
22101626 ATCTAAATATTAAATTAAA
1 ATATAAATATTAAATTAAA
22101645 TTTAATATCT
Statistics
Matches: 110, Mismatches: 21, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
29 10 0.09
30 38 0.35
31 53 0.48
32 9 0.08
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (30 bp):
ATATAAATATTAAATTAAAAAATATTATCT
Found at i:22101557 original size:61 final size:61
Alignment explanation
Indices: 22101470--22101665 Score: 288
Period size: 61 Copynumber: 3.2 Consensus size: 61
22101460 ATTAGAATTA
* **
22101470 ATCATATTAATATTAAATTAACAAAATATTATCTAGATAAATATTAAATTAAA-TTAAGTAT
1 ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAA-TAT
* * *
22101531 ATTATATTAATATTTAATTAATAAAATACTATCTATCTAAATATTAAATTAAATTTAATAT
1 ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAATAT
*
22101592 CA-CATATTAACATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAATAT
1 -ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAATAT
*
22101653 CTCATATTAATAT
1 ATCATATTAATAT
22101666 CTAGATAAAT
Statistics
Matches: 120, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
61 115 0.96
62 5 0.04
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.42
Consensus pattern (61 bp):
ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAATAT
Found at i:22108858 original size:31 final size:31
Alignment explanation
Indices: 22108815--22108881 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
22108805 AAAAAAATTA
*
22108815 ATAACTTAATATTATTAATTAAAACAAAAAT
1 ATAATTTAATATTATTAATTAAAACAAAAAT
22108846 ATAATTTAATATTATTAATTAAAACAAAAAT
1 ATAATTTAATATTATTAATTAAAACAAAAAT
22108877 ATAAT
1 ATAAT
22108882 AATATCTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.37
Consensus pattern (31 bp):
ATAATTTAATATTATTAATTAAAACAAAAAT
Found at i:22108884 original size:34 final size:34
Alignment explanation
Indices: 22108807--22108884 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 34
22108797 TTTTTTTTAA
*
22108807 AAAAAT-TAATAACTTAATATTATTAATTAAAAC
1 AAAAATATAATAATTTAATATTATTAATTAAAAC
22108840 -AAAA-AT-ATAATTTAATATTATTAATTAAAAC
1 AAAAATATAATAATTTAATATTATTAATTAAAAC
22108871 AAAAATATAATAAT
1 AAAAATATAATAAT
22108885 ATCTTTTTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
31 24 0.60
32 9 0.22
33 2 0.05
34 5 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (34 bp):
AAAAATATAATAATTTAATATTATTAATTAAAAC
Found at i:22109219 original size:20 final size:20
Alignment explanation
Indices: 22109194--22109233 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22109184 GCTGCGTTGC
*
22109194 AAAAAAATAC-ACTCTAAAAA
1 AAAAAAAAACTACT-TAAAAA
22109214 AAAAAAAAACTACTTAAAAA
1 AAAAAAAAACTACTTAAAAA
22109234 TATTTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAAAAAAACTACTTAAAAA
Found at i:22125500 original size:23 final size:23
Alignment explanation
Indices: 22125470--22125538 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
22125460 TGGTTAAGTG
22125470 TTAGTGTAACGTTTCTTGAAACC
1 TTAGTGTAACGTTTCTTGAAACC
22125493 TTAGTGTAACGTTTCTTGAAACC
1 TTAGTGTAACGTTTCTTGAAACC
22125516 TTAGTGTAACGTTTCTTGAAACC
1 TTAGTGTAACGTTTCTTGAAACC
22125539 CAAGTTCAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (23 bp):
TTAGTGTAACGTTTCTTGAAACC
Found at i:22126563 original size:29 final size:29
Alignment explanation
Indices: 22126528--22126612 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 29
22126518 TGTGGCCCTA
*
22126528 CCATGTGTCTCACATGGCCAAAAACACAC
1 CCATGTGTCTCACACGGCCAAAAACACAC
* *
22126557 CCGTGTGTCTCACACGGCCAAAGACACAC
1 CCATGTGTCTCACACGGCCAAAAACACAC
* * *
22126586 TCATGTGTCTCACACGACCAAAGACAC
1 CCATGTGTCTCACACGGCCAAAAACAC
22126613 GCTGGTGTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.32, C:0.35, G:0.16, T:0.16
Consensus pattern (29 bp):
CCATGTGTCTCACACGGCCAAAAACACAC
Found at i:22132177 original size:23 final size:23
Alignment explanation
Indices: 22132108--22132264 Score: 117
Period size: 23 Copynumber: 6.8 Consensus size: 23
22132098 AACTCGCCAT
* *
22132108 AGCTCGTATGAGCTTACTAATTC
1 AGCTCGTAAGAGCTTACTGATTC
*
22132131 AGCTCGTAAGAGCTTACCGATTC
1 AGCTCGTAAGAGCTTACTGATTC
*
22132154 AGCTCGTAAGAGCTTACTGTTTC
1 AGCTCGTAAGAGCTTACTGATTC
* * * *
22132177 AACTCAT-TGAAGCTTACCGATTC
1 AGCTCGTAAG-AGCTTACTGATTC
* *
22132200 TGTTCG-ATAGAGCTTACTG-TTC
1 AGCTCGTA-AGAGCTTACTGATTC
* *
22132222 AGCTC-AATAGAGCTTACTGTTTTC
1 AGCTCGTA-AGAGCTTACTG-ATTC
*
22132246 AGCTC-AATAGAGCTTACTG
1 AGCTCGTA-AGAGCTTACTG
22132265 TTTATTAGCC
Statistics
Matches: 110, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
22 20 0.18
23 67 0.61
24 23 0.21
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (23 bp):
AGCTCGTAAGAGCTTACTGATTC
Found at i:22132191 original size:46 final size:46
Alignment explanation
Indices: 22132139--22132267 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 46
22132129 TCAGCTCGTA
22132139 AGAGCTTACCGATTCAGCTCG-TAAGAGCTTACTGTTTCAACTC-AT
1 AGAGCTTACCGATTCAGCTCGAT-AGAGCTTACTGTTTCAACTCAAT
* * * *
22132184 TGAAGCTTACCGATTCTGTTCGATAGAGCTTACTG-TTCAGCTCAAT
1 AG-AGCTTACCGATTCAGCTCGATAGAGCTTACTGTTTCAACTCAAT
* * *
22132230 AGAGCTTACTGTTTTCAGCTCAATAGAGCTTACTGTTT
1 AGAGCTTACCG-ATTCAGCTCGATAGAGCTTACTGTTT
22132268 ATTAGCCCAG
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
45 16 0.23
46 50 0.72
47 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (46 bp):
AGAGCTTACCGATTCAGCTCGATAGAGCTTACTGTTTCAACTCAAT
Found at i:22132251 original size:24 final size:24
Alignment explanation
Indices: 22132206--22132267 Score: 110
Period size: 24 Copynumber: 2.7 Consensus size: 24
22132196 ATTCTGTTCG
22132206 ATAGAGCTTACTG--TTCAGCTCA
1 ATAGAGCTTACTGTTTTCAGCTCA
22132228 ATAGAGCTTACTGTTTTCAGCTCA
1 ATAGAGCTTACTGTTTTCAGCTCA
22132252 ATAGAGCTTACTGTTT
1 ATAGAGCTTACTGTTT
22132268 ATTAGCCCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
22 13 0.34
24 25 0.66
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (24 bp):
ATAGAGCTTACTGTTTTCAGCTCA
Found at i:22139424 original size:23 final size:22
Alignment explanation
Indices: 22139394--22139492 Score: 78
Period size: 23 Copynumber: 4.4 Consensus size: 22
22139384 CCGCTTGTAT
22139394 GAGCTTACCGATTCAGCTCGTAA
1 GAGCTTACCGATTCAGCTC-TAA
* * *
22139417 GAGCTTACTGTTTCAGCTC-ATT
1 GAGCTTACCGATTCAGCTCTA-A
*
22139439 GAAGCTTACCGATTCAGCTCAATA
1 G-AGCTTACCGATTCAGCTCTA-A
*
22139463 GAGCTTA-CTATTCAGCT-TAATA
1 GAGCTTACCGATTCAGCTCT-A-A
22139485 GAGCTTAC
1 GAGCTTAC
22139493 AGTTTTTAGC
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
21 1 0.02
22 20 0.32
23 39 0.62
24 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (22 bp):
GAGCTTACCGATTCAGCTCTAA
Found at i:22139466 original size:46 final size:46
Alignment explanation
Indices: 22139394--22139545 Score: 139
Period size: 46 Copynumber: 3.2 Consensus size: 46
22139384 CCGCTTGTAT
* *
22139394 GAGCTTACCGATTCAGCTC-GTAAGAGCTTACTGTTTCAGCTC-ATT
1 GAGCTTACCGATTCAGCTCAAT-AGAGCTTACTGTTTCAGCTCAATA
* *
22139439 GAAGCTTACCGATTCAGCTCAATAGAGCTTACT-ATTCAGCTTAATA
1 G-AGCTTACCGATTCAGCTCAATAGAGCTTACTGTTTCAGCTCAATA
* * * * **
22139485 GAGCTTACAGTTTTTAGCTCAATAGAACTTACTGTTTATCAGCTCAGGA
1 GAGCTTACCG-ATTCAGCTCAATAGAGCTTACTG-TT-TCAGCTCAATA
22139534 GGAGCTTACCGA
1 -GAGCTTACCGA
22139546 CCATGACTCG
Statistics
Matches: 85, Mismatches: 14, Indels: 12
0.77 0.13 0.11
Matches are distributed among these distances:
45 16 0.19
46 50 0.59
47 1 0.01
48 1 0.01
49 8 0.09
50 9 0.11
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (46 bp):
GAGCTTACCGATTCAGCTCAATAGAGCTTACTGTTTCAGCTCAATA
Found at i:22139508 original size:24 final size:23
Alignment explanation
Indices: 22139416--22139530 Score: 94
Period size: 24 Copynumber: 4.9 Consensus size: 23
22139406 TCAGCTCGTA
22139416 AGAGCTTAC-TGTTTCAGCTC-AT
1 AGAGCTTACGT-TTTCAGCTCAAT
* *
22139438 TGAAGCTTACCG-ATTCAGCTCAAT
1 AG-AGCTTA-CGTTTTCAGCTCAAT
* *
22139462 AGAGCTTAC-TATTCAGCTTAAT
1 AGAGCTTACGTTTTCAGCTCAAT
*
22139484 AGAGCTTACAGTTTTTAGCTCAAT
1 AGAGCTTAC-GTTTTCAGCTCAAT
*
22139508 AGAACTTACTGTTTATCAGCTCA
1 AGAGCTTAC-GTTT-TCAGCTCA
22139531 GGAGGAGCTT
Statistics
Matches: 75, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
22 22 0.29
23 20 0.27
24 26 0.35
25 7 0.09
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (23 bp):
AGAGCTTACGTTTTCAGCTCAAT
Found at i:22144610 original size:21 final size:21
Alignment explanation
Indices: 22144586--22144655 Score: 115
Period size: 21 Copynumber: 3.3 Consensus size: 21
22144576 TCTCACACGC
22144586 CCGTGTGGCCAAGGGACATGG
1 CCGTGTGGCCAAGGGACATGG
22144607 CCGTGTGGCCAAGGGACATGG
1 CCGTGTGGCCAAGGGACATGG
*
22144628 CCGTGTGGCCAAGGCACAT-G
1 CCGTGTGGCCAAGGGACATGG
22144648 CCTGTGTG
1 CC-GTGTG
22144656 AAAATCGACT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 3 0.06
21 44 0.94
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.17
Consensus pattern (21 bp):
CCGTGTGGCCAAGGGACATGG
Found at i:22145521 original size:16 final size:16
Alignment explanation
Indices: 22145500--22145532 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22145490 GTTTAAGATT
22145500 ACTTTTGTCATAATTA
1 ACTTTTGTCATAATTA
22145516 ACTTTTGTCATAATTA
1 ACTTTTGTCATAATTA
22145532 A
1 A
22145533 GCGGAGTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
ACTTTTGTCATAATTA
Found at i:22148327 original size:2 final size:2
Alignment explanation
Indices: 22148320--22148359 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
22148310 AAACAAGCAA
22148320 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22148360 TTCTTAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22158061 original size:90 final size:91
Alignment explanation
Indices: 22157871--22158061 Score: 242
Period size: 91 Copynumber: 2.1 Consensus size: 91
22157861 ATATCAATTT
* * * * *
22157871 ATTAAGAACATTTAGTGGTTCATCCTATAAATTCGGTACGTTCATCAAGTCTATCTCAAATAAGA
1 ATTAAGAGCATCTAGTAGTTCATCCTATAAATTCGGTACATTCATCAAGTCCATCTCAAATAAGA
*
22157936 CCATCAAAACCCTAGGCTATGAACTC
66 CCACCAAAACCCTAGGCTATGAACTC
* * * *
22157962 ATTAAGAGCATCTAGTAGTTCATCCTATAAGTTCGGTGA-ATTCATCAAGTCCGTCT-TAGTAAG
1 ATTAAGAGCATCTAGTAGTTCATCCTATAAATTCGGT-ACATTCATCAAGTCCATCTCAAATAAG
* * *
22158025 AGCACCCAAACTCTAGGCTATGAACTC
65 ACCACCAAAACCCTAGGCTATGAACTC
22158052 ATTAAGAGCA
1 ATTAAGAGCA
22158062 CGGAGGTCAT
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
90 38 0.44
91 47 0.55
92 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (91 bp):
ATTAAGAGCATCTAGTAGTTCATCCTATAAATTCGGTACATTCATCAAGTCCATCTCAAATAAGA
CCACCAAAACCCTAGGCTATGAACTC
Found at i:22165927 original size:57 final size:57
Alignment explanation
Indices: 22165839--22165947 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
22165829 GGCATCGGGA
* * *
22165839 TCTATAGGAACAGAAGTATAGTCTTCGACTTGTTTGGTGATGGAAGGATTGATGGGT
1 TCTATAGGAACAGAAGTAGAGCCTCCGACTTGTTTGGTGATGGAAGGATTGATGGGT
* * * *
22165896 TCTATGGGAACAGAGGTAGAGCCTCCGACTTGTTTGGTGGTGGGAGGATTGA
1 TCTATAGGAACAGAAGTAGAGCCTCCGACTTGTTTGGTGATGGAAGGATTGA
22165948 ACAGTGCATA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.24, C:0.11, G:0.35, T:0.30
Consensus pattern (57 bp):
TCTATAGGAACAGAAGTAGAGCCTCCGACTTGTTTGGTGATGGAAGGATTGATGGGT
Found at i:22168186 original size:20 final size:19
Alignment explanation
Indices: 22168145--22168192 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
22168135 GAATAAAACC
*
22168145 AAATAAAATTAAAAAATGTAA
1 AAATAAATTTAAAAAA-GT-A
22168166 AAATAAATTTAAGAAAA-TA
1 AAATAAATTTAA-AAAAGTA
22168185 AAATAAAT
1 AAATAAAT
22168193 AGATAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 9 0.36
20 1 0.04
21 11 0.44
22 4 0.16
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (19 bp):
AAATAAATTTAAAAAAGTA
Found at i:22181306 original size:20 final size:21
Alignment explanation
Indices: 22181281--22181328 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
22181271 TCGACTTTTA
22181281 CTTGTTGACAAA-TC-AAACAT
1 CTTGTT-ACAAACTCGAAACAT
22181301 CTTGTTACAAACTCTGAAACAT
1 CTTGTTACAAACTC-GAAACAT
22181323 CTTGTT
1 CTTGTT
22181329 TCATACCTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.20
20 8 0.32
22 12 0.48
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.35
Consensus pattern (21 bp):
CTTGTTACAAACTCGAAACAT
Found at i:22184467 original size:11 final size:11
Alignment explanation
Indices: 22184431--22184486 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
22184421 CATGGTATGT
22184431 ATGATATGCAC
1 ATGATATGCAC
* *
22184442 ATGACATG--T
1 ATGATATGCAC
22184451 ATGATATGCAC
1 ATGATATGCAC
*
22184462 ATGATATG--T
1 ATGATATGCAC
22184471 ATGATATGCAC
1 ATGATATGCAC
22184482 ATGAT
1 ATGAT
22184487 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22184486 original size:20 final size:20
Alignment explanation
Indices: 22184420--22184486 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
22184410 ATTTTGATAA
*
22184420 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22184440 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
22184460 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22184480 ACATGAT
1 ACATGAT
22184487 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22184564 original size:25 final size:25
Alignment explanation
Indices: 22184536--22184640 Score: 128
Period size: 25 Copynumber: 4.2 Consensus size: 25
22184526 GAGGAAGTGT
22184536 TAAAGGGCTTATGCCCCAGTTATGA
1 TAAAGGGCTTATGCCCCAGTTATGA
22184561 TAAAGGGCTTATGCCCCAGTTAT--
1 TAAAGGGCTTATGCCCCAGTTATGA
*
22184584 TAAAGGGCTTATGCCCCAGTTATTA
1 TAAAGGGCTTATGCCCCAGTTATGA
*
22184609 -AAAGAGGC-TAGGCCTCCAGTTATATGA
1 TAAAG-GGCTTATGCC-CCAG-T-TATGA
22184636 TAAAG
1 TAAAG
22184641 CAGCTATGCT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
23 23 0.32
24 9 0.13
25 30 0.42
26 1 0.01
27 4 0.06
28 4 0.06
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (25 bp):
TAAAGGGCTTATGCCCCAGTTATGA
Found at i:22184591 original size:23 final size:23
Alignment explanation
Indices: 22184535--22184610 Score: 134
Period size: 23 Copynumber: 3.2 Consensus size: 23
22184525 GGAGGAAGTG
22184535 TTAAAGGGCTTATGCCCCAGTTA
1 TTAAAGGGCTTATGCCCCAGTTA
22184558 TGATAAAGGGCTTATGCCCCAGTTA
1 T--TAAAGGGCTTATGCCCCAGTTA
22184583 TTAAAGGGCTTATGCCCCAGTTA
1 TTAAAGGGCTTATGCCCCAGTTA
22184606 TTAAA
1 TTAAA
22184611 AGAGGCTAGG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
23 28 0.55
25 23 0.45
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (23 bp):
TTAAAGGGCTTATGCCCCAGTTA
Found at i:22184606 original size:48 final size:48
Alignment explanation
Indices: 22184535--22184631 Score: 144
Period size: 48 Copynumber: 2.0 Consensus size: 48
22184525 GGAGGAAGTG
*
22184535 TTAAAGGGCTTATGCCCCAGTTATGATAAAG-GGCTTATGCC-CCAGTTA
1 TTAAAGGGCTTATGCCCCAGTTATGA-AAAGAGGC-TAGGCCTCCAGTTA
*
22184583 TTAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTA
1 TTAAAGGGCTTATGCCCCAGTTATGAAAAGAGGCTAGGCCTCCAGTTA
22184631 T
1 T
22184632 ATGATAAAGC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 9 0.20
48 36 0.80
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (48 bp):
TTAAAGGGCTTATGCCCCAGTTATGAAAAGAGGCTAGGCCTCCAGTTA
Found at i:22184863 original size:31 final size:31
Alignment explanation
Indices: 22184825--22184888 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
22184815 CGTTTACAGT
22184825 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* **
22184856 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
22184887 AA
1 AA
22184889 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:22191409 original size:11 final size:11
Alignment explanation
Indices: 22191373--22191428 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
22191363 CATGGTATGT
22191373 ATGATATGCAC
1 ATGATATGCAC
* *
22191384 ATGACATG--T
1 ATGATATGCAC
22191393 ATGATATGCAC
1 ATGATATGCAC
*
22191404 ATGATATG--T
1 ATGATATGCAC
22191413 ATGATATGCAC
1 ATGATATGCAC
22191424 ATGAT
1 ATGAT
22191429 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22191428 original size:20 final size:20
Alignment explanation
Indices: 22191362--22191428 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
22191352 ATTTTGATAA
*
22191362 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22191382 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
22191402 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22191422 ACATGAT
1 ACATGAT
22191429 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22191533 original size:23 final size:23
Alignment explanation
Indices: 22191479--22191576 Score: 142
Period size: 23 Copynumber: 4.1 Consensus size: 23
22191469 AGGAAGTGTA
22191479 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
* *
22191504 AAAGGGCTTATGCCCTAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
22191527 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
22191550 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
22191574 AAA
1 AAA
22191577 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 25 0.37
24 22 0.33
25 20 0.30
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:22191559 original size:24 final size:24
Alignment explanation
Indices: 22191477--22191597 Score: 156
Period size: 24 Copynumber: 5.0 Consensus size: 24
22191467 GGAGGAAGTG
22191477 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* * *
22191501 GATAAAGGGCTTATGCCCTAATTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
22191526 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
22191549 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
22191573 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
22191598 ATGATAAACC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
23 21 0.25
24 32 0.38
25 31 0.37
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:22191826 original size:31 final size:31
Alignment explanation
Indices: 22191791--22191854 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
22191781 CGTTTACAGT
*
22191791 AAAGGCTTCGGCCCAGTA-ATATGAAATATGA
1 AAAGGCTTCAGCCCAGTATA-ATGAAATATGA
*
22191822 AAAGGCTTCAGCCCAGTGTAATGAAATATGA
1 AAAGGCTTCAGCCCAGTATAATGAAATATGA
22191853 AA
1 AA
22191855 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTATAATGAAATATGA
Found at i:22195968 original size:42 final size:43
Alignment explanation
Indices: 22195857--22195983 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 43
22195847 AGCTCGTACA
* * *
22195857 ATGCCAACGTCTCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* **
22195900 ACGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* * * *
22195942 ATGCCAACATCCCAGATGTGGTCTTACACGAAAACACATATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATC
22195984 AGATCTTATG
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:22204030 original size:11 final size:13
Alignment explanation
Indices: 22204011--22204041 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
22204001 TTTATTTAAG
*
22204011 TTATATATAAATA
1 TTATATATAATTA
22204024 TTATATATAATTA
1 TTATATATAATTA
22204037 TTATA
1 TTATA
22204042 ATTATTAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATATATAATTA
Found at i:22204041 original size:24 final size:24
Alignment explanation
Indices: 22203995--22204048 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
22203985 TATTAAAATC
* *
22203995 AAATATTTTATTTAAGTTATATAT
1 AAATATTATATATAAGTTATATAT
22204019 AAATATTATATATAA-TTAT-TAT
1 AAATATTATATATAAGTTATATAT
*
22204041 AATTATTA
1 AAATATTA
22204049 ACCATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 10 0.37
23 4 0.15
24 13 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
AAATATTATATATAAGTTATATAT
Found at i:22204048 original size:3 final size:3
Alignment explanation
Indices: 22204022--22204098 Score: 68
Period size: 3 Copynumber: 25.7 Consensus size: 3
22204012 TATATATAAA
* * * * **
22204022 TAT TAT ATAT AAT TAT TAT AAT TAT TAAC CAT TAT TAT GGT T-T TA-
1 TAT TAT -TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
22204067 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
22204099 AATAAAGTAA
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
2 4 0.07
3 51 0.86
4 4 0.07
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:22205878 original size:16 final size:16
Alignment explanation
Indices: 22205859--22205889 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22205849 CTTCTTCACT
22205859 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
22205875 TACTTACTTACTTAA
1 TACTCACTTACTTAA
22205890 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:22205895 original size:20 final size:20
Alignment explanation
Indices: 22205856--22205895 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22205846 AAACTTCTTC
* *
22205856 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
22205876 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
22205896 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:22206213 original size:53 final size:54
Alignment explanation
Indices: 22206081--22206335 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 54
22206071 ACACAGGTAC
* * * * *
22206081 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * * * *
22206130 CTTACCATTACCCTGTCTCGACATGGTCTTACATGGTATACTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
22206183 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * * *
22206238 CTTATCAATGCCCTGTCTTGACATGGTCTTAAATGATATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
22206291 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
22206336 AAACCCTAAT
Statistics
Matches: 164, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
49 34 0.21
50 1 0.01
52 1 0.01
53 47 0.29
54 10 0.06
55 69 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:22206282 original size:108 final size:110
Alignment explanation
Indices: 22206126--22206328 Score: 295
Period size: 108 Copynumber: 1.9 Consensus size: 110
22206116 GTATCCTTTT
* * *
22206126 GAAACTTACCATTACCCTGTCTCGACATGGTCTTACATGGTATACTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATACCCTGTCTCGACATGGTCTTAAATGATATACTTGCCTTA-GAAACCTCACC
22206189 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * * * *
22206234 GAAACTTATCAATGCCCTGTCTTGACATGGTCTTAAATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATACCCTGTCTCGACATGGTCTTAAATGATATACTTGCCTTAGAAACCTCACCA
*
22206299 ATTTCCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
22206329 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATACCCTGTCTCGACATGGTCTTAAATGATATACTTGCCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:22208408 original size:13 final size:14
Alignment explanation
Indices: 22208392--22208421 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
22208382 TTTGAGAAGG
22208392 GATTTGGAGATG-T
1 GATTTGGAGATGCT
22208405 GATTTGGAGATGCT
1 GATTTGGAGATGCT
22208419 GAT
1 GAT
22208422 GTTTATATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.23, C:0.03, G:0.37, T:0.37
Consensus pattern (14 bp):
GATTTGGAGATGCT
Found at i:22208515 original size:28 final size:28
Alignment explanation
Indices: 22208462--22208545 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
22208452 CACTCTGTGC
22208462 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
22208491 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* ** *
22208519 GACACTGGCGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
22208546 CTAGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 31 0.63
29 18 0.37
ACGTcount: A:0.19, C:0.06, G:0.31, T:0.44
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:22212743 original size:40 final size:40
Alignment explanation
Indices: 22212706--22212930 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
22212696 GCTACTCGTT
* * *
22212706 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
22212746 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
22212786 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
22212826 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
22212865 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22212906 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22212931 CATCATTCGA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 118 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22212890 original size:119 final size:120
Alignment explanation
Indices: 22212706--22212930 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
22212696 GCTACTCGTT
*
22212706 CAAATGCCTTCGGGTCATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGTCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
22212771 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
22212826 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGTCATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
22212888 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
22212931 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGTCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22214126 original size:56 final size:56
Alignment explanation
Indices: 22214059--22214234 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
22214049 TATTAGTTTA
*
22214059 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
22214115 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
22214171 TCGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
22214227 TTGCCCAT
1 TTGCCCAT
22214235 CATCCCTTGT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Done.