Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 76 of 349
Found at i:22222241 original size:20 final size:20
Alignment explanation
Indices: 22222213--22222250 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22222203 TACATTAAGT
22222213 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
22222233 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
22222251 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:22228370 original size:39 final size:39
Alignment explanation
Indices: 22228149--22228370 Score: 239
Period size: 40 Copynumber: 5.6 Consensus size: 39
22228139 TTGAATGCTG
* * * * * *
22228149 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
22228189 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
22228229 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
22228269 TCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
22228308 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
22228347 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22228371 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 74 0.47
40 75 0.47
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:22228394 original size:78 final size:79
Alignment explanation
Indices: 22228224--22228405 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 79
22228214 GTGCGAGATA
* * *
22228224 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
**
22228289 CATCGTGCGAGTTG
66 CATCGTGCGAGGAG
* * * *
22228303 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
22228367 CAT-TTGAACGAGGAG
66 CATCGTG--CGAGGAG
* *
22228382 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
22228406 TACGTGATTT
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
77 2 0.02
78 47 0.54
79 38 0.44
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATCGTGCGAGGAG
Found at i:22236136 original size:40 final size:40
Alignment explanation
Indices: 22236053--22236315 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
22236043 TTGAATGCTG
* * * * * *
22236053 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
22236093 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
22236133 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
22236173 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
22236213 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22236253 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22236292 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22236316 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:22236335 original size:79 final size:80
Alignment explanation
Indices: 22236092--22236350 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
22236082 AAGTGAATAT
* * * * * * *
22236092 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
22236156 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
22236172 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
22236237 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
22236252 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
22236316 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
22236331 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
22236351 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:22239536 original size:18 final size:18
Alignment explanation
Indices: 22239513--22239547 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22239503 TATACGTACA
*
22239513 ATTTTTATTTATATATAT
1 ATTTTTATATATATATAT
*
22239531 ATTTTTCTATATATATA
1 ATTTTTATATATATATA
22239548 GTCTCTCTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTTATATATATATAT
Found at i:22239589 original size:17 final size:17
Alignment explanation
Indices: 22239563--22239596 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22239553 TCTCTCTCTC
22239563 TTTTACTTATTTTTTAT
1 TTTTACTTATTTTTTAT
*
22239580 TTTTATTTATTTTTTAT
1 TTTTACTTATTTTTTAT
22239597 AGTAACATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTACTTATTTTTTAT
Found at i:22246493 original size:13 final size:13
Alignment explanation
Indices: 22246475--22246509 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
22246465 AAAGTGTAAA
22246475 AAAAAGGAAAAAG
1 AAAAAGGAAAAAG
22246488 AAAAAGG-AAAAG
1 AAAAAGGAAAAAG
*
22246500 AAAAAAGAAA
1 AAAAAGGAAA
22246510 TATTGAACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAGGAAAAAG
Found at i:22247586 original size:14 final size:14
Alignment explanation
Indices: 22247564--22247599 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
22247554 GTTTGACAGT
*
22247564 AATGTTTTCCGGAA
1 AATGATTTCCGGAA
*
22247578 AATGATTTCTGGAA
1 AATGATTTCCGGAA
22247592 AATGATTT
1 AATGATTT
22247600 ACTTTTTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (14 bp):
AATGATTTCCGGAA
Found at i:22249000 original size:32 final size:32
Alignment explanation
Indices: 22248959--22249050 Score: 175
Period size: 32 Copynumber: 2.9 Consensus size: 32
22248949 GTCAATCATT
22248959 TCAATATCCAACAAGCTTAAAACATAATAAAG
1 TCAATATCCAACAAGCTTAAAACATAATAAAG
*
22248991 TCAATATCCAACAAGCTTAAAACATAATAAAT
1 TCAATATCCAACAAGCTTAAAACATAATAAAG
22249023 TCAATATCCAACAAGCTTAAAACATAAT
1 TCAATATCCAACAAGCTTAAAACATAAT
22249051 CAATATCTAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.52, C:0.20, G:0.04, T:0.24
Consensus pattern (32 bp):
TCAATATCCAACAAGCTTAAAACATAATAAAG
Found at i:22249085 original size:59 final size:62
Alignment explanation
Indices: 22248956--22249092 Score: 174
Period size: 59 Copynumber: 2.2 Consensus size: 62
22248946 ATTGTCAATC
*
22248956 ATTTCAATATCCAACAAGCTTAAAACATAATAAAGTCAATATCCAACAAGCTTAAAACATAATA
1 ATTTCAATATCCAACAAGCTTAAAAC--AATAAAGTCAATATCCAACAAGATTAAAACATAATA
* * *
22249020 AATTCAATATCCAACAAGCTTAAAAC-AT-AA-TCAATATCTAACAA-ATTCAAGACATAATA
1 ATTTCAATATCCAACAAGCTTAAAACAATAAAGTCAATATCCAACAAGATT-AAAACATAATA
*
22249079 ATTTCAAAATCCAA
1 ATTTCAATATCCAA
22249093 AAACTAAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
58 2 0.03
59 35 0.53
60 2 0.03
61 2 0.03
64 25 0.38
ACGTcount: A:0.52, C:0.19, G:0.04, T:0.26
Consensus pattern (62 bp):
ATTTCAATATCCAACAAGCTTAAAACAATAAAGTCAATATCCAACAAGATTAAAACATAATA
Found at i:22253133 original size:17 final size:17
Alignment explanation
Indices: 22253111--22253163 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
22253101 TCTTCAACAG
22253111 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
*
22253128 ACAGAT--TAAA--CAA
1 ACAGATGCAAAATCCAA
22253141 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
22253158 ACAGAT
1 ACAGAT
22253164 TCTTCAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 9 0.30
15 6 0.20
17 15 0.50
ACGTcount: A:0.55, C:0.21, G:0.11, T:0.13
Consensus pattern (17 bp):
ACAGATGCAAAATCCAA
Found at i:22253145 original size:30 final size:30
Alignment explanation
Indices: 22253106--22253164 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
22253096 AAGATTCTTC
*
22253106 AACAGACAGATGCAAAATCCAAACAGATTA
1 AACAAACAGATGCAAAATCCAAACAGATTA
22253136 AACAAACAGATGCAAAATCCAAACAGATT
1 AACAAACAGATGCAAAATCCAAACAGATT
22253165 CTTCAACTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.54, C:0.20, G:0.12, T:0.14
Consensus pattern (30 bp):
AACAAACAGATGCAAAATCCAAACAGATTA
Found at i:22259336 original size:14 final size:15
Alignment explanation
Indices: 22259315--22259352 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
22259305 TCTTTTCAAC
22259315 TATTTTTATACTTTT-
1 TATTTTTATA-TTTTG
22259330 T-TTTTTATATTTTG
1 TATTTTTATATTTTG
22259344 TATTTTTAT
1 TATTTTTAT
22259353 CTTCAGAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.19
14 9 0.43
15 8 0.38
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (15 bp):
TATTTTTATATTTTG
Found at i:22259815 original size:30 final size:31
Alignment explanation
Indices: 22259763--22259821 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
22259753 TATTAGTCCC
*
22259763 TATACTTTTAAATTTATCAAATTT-AATCAT
1 TATACTTTTAAAATTATCAAATTTCAATCAT
*
22259793 TATACTTTTTAAAATT-TGAAATTTCAATC
1 TATAC-TTTTAAAATTATCAAATTTCAATC
22259822 TTGGTCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (31 bp):
TATACTTTTAAAATTATCAAATTTCAATCAT
Found at i:22262156 original size:8 final size:8
Alignment explanation
Indices: 22262140--22262206 Score: 50
Period size: 8 Copynumber: 8.5 Consensus size: 8
22262130 ATATGGGTAG
*
22262140 AATACTAA
1 AATAATAA
22262148 AATAAT-A
1 AATAATAA
22262155 AATAAT-A
1 AATAATAA
*
22262162 AATAA-AGG
1 AATAATA-A
* *
22262170 AATGATAT
1 AATAATAA
22262178 AATAATAA
1 AATAATAA
*
22262186 AATAATACT
1 AATAATA-A
22262195 AATAATAA
1 AATAATAA
22262203 AATA
1 AATA
22262207 CCAAATAATA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
7 13 0.28
8 26 0.55
9 8 0.17
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (8 bp):
AATAATAA
Found at i:22262391 original size:24 final size:24
Alignment explanation
Indices: 22262344--22262393 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
22262334 AAGGGTAAAG
* *
22262344 AAATAAATAAATGAACGAATATAT
1 AAATAAATAAATAAACGAAAATAT
22262368 AAATAAATAAATAAAAC-AAAATAT
1 AAATAAATAAAT-AAACGAAAATAT
22262392 AA
1 AA
22262394 CAATACATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (24 bp):
AAATAAATAAATAAACGAAAATAT
Found at i:22264106 original size:24 final size:24
Alignment explanation
Indices: 22264079--22264127 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
22264069 ATATAATTTG
*
22264079 AAAATAATAATAATAACACATGCA
1 AAAATAATAATAATAAAACATGCA
22264103 AAAATAATAATAATAAAACATGCA
1 AAAATAATAATAATAAAACATGCA
22264127 A
1 A
22264128 TATCTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.65, C:0.10, G:0.04, T:0.20
Consensus pattern (24 bp):
AAAATAATAATAATAAAACATGCA
Found at i:22265955 original size:22 final size:22
Alignment explanation
Indices: 22265927--22265970 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
22265917 AAATTATTCA
22265927 ATTTATTT-TATTATATATATTT
1 ATTTATTTGTATT-TATATATTT
22265949 ATTTATTTGTATTTATATATTT
1 ATTTATTTGTATTTATATATTT
22265971 TTGTTTGCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (22 bp):
ATTTATTTGTATTTATATATTT
Found at i:22266311 original size:81 final size:81
Alignment explanation
Indices: 22266113--22266427 Score: 359
Period size: 82 Copynumber: 3.8 Consensus size: 81
22266103 CTTTGAATAA
* * * * *
22266113 AATCTGTTTCGGGATTTATTCCCAGC-GATCAACAGATTTTATTCCATTTTTTATTTTGTTT-TC
1 AATCTGTTTCGGGATTTATTCAC-GCTGTTTAACAGATTTTATTCTA-TTTTAATTTTGTTTCT-
*
22266176 AAATGAGAAATTAAAATTAAAT
63 AAAT-A-AAATT-AAATTGAAT
* *
22266198 AAAATTTGTTTCGGGATTTATTCACGCCGTTTAACAGATTTTATTCTATTTTAATTTTGTTTCTA
1 --AATCTGTTTCGGGATTTATTCACGCTGTTTAACAGATTTTATTCTATTTTAATTTTGTTTCTA
22266263 AATAAAATTAAATTGAAT
64 AATAAAATTAAATTGAAT
* * *
22266281 AATCTGTTTTGGGATTTATTCACGCTGTTTAATAGATTTTATTCTATTTTAATTTTGTTTCCAAA
1 AATCTGTTTCGGGATTTATTCACGCTGTTTAACAGATTTTATTCTATTTTAATTTTGTTT-CTAA
*
22266346 ATAGAATTAAATTGAAT
65 ATAAAATTAAATTGAAT
* * * *
22266363 AATCTGTTTCGGGATTTATTGCA-G-TCATTTAACAAATTTTATTCGATTTTGATTTTGTTTCTA
1 AATCTGTTTCGGGATTTATT-CACGCT-GTTTAACAGATTTTATTCTATTTTAATTTTGTTTCTA
22266426 AA
64 AA
22266428 CGAGAAGGCT
Statistics
Matches: 203, Mismatches: 20, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
81 61 0.30
82 68 0.33
83 10 0.05
84 5 0.02
85 1 0.00
86 19 0.09
87 39 0.19
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (81 bp):
AATCTGTTTCGGGATTTATTCACGCTGTTTAACAGATTTTATTCTATTTTAATTTTGTTTCTAAA
TAAAATTAAATTGAAT
Found at i:22266569 original size:77 final size:78
Alignment explanation
Indices: 22266407--22266580 Score: 190
Period size: 77 Copynumber: 2.2 Consensus size: 78
22266397 AATTTTATTC
* * *
22266407 GATTTTGATTTTGTTTCTAAACGAGAAGGCTTAATCAAATAATTATGTTTCGAGATTTATTCCCG
1 GATTTTGATTTTGTTTCCAAAC--GAAGACTTAATCAAATAATTATGTTTCGAGATTTAATCCCG
* * *
22266472 TCGCTTAACAGATTT
64 TCGATTAACAAACTT
* * * * * **
22266487 TATTTTGATTTTGTTTCCAAAC-AAGATTTAATTAAATAATTTTGTTTCGGGATTTAATCTTGTC
1 GATTTTGATTTTGTTTCCAAACGAAGACTTAATCAAATAATTATGTTTCGAGATTTAATCCCGTC
22266551 -ATTCAACAAACTT
66 GATT-AACAAACTT
22266564 GATTTTGATTTTGTTTC
1 GATTTTGATTTTGTTTC
22266581 ATAATTTTAA
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
76 2 0.03
77 57 0.72
80 20 0.25
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (78 bp):
GATTTTGATTTTGTTTCCAAACGAAGACTTAATCAAATAATTATGTTTCGAGATTTAATCCCGTC
GATTAACAAACTT
Found at i:22267164 original size:184 final size:184
Alignment explanation
Indices: 22266855--22267197 Score: 650
Period size: 184 Copynumber: 1.9 Consensus size: 184
22266845 ACAAAAGTTG
*
22266855 ATAAGTTTTCTAATTCTAGTTTTGTTTCTTAACAGAAAATGGAAACTCCTAACAATTCAATCAAT
1 ATAAGTTTTCTAATTCTAGTTTTGTTTCTTAACAGAAAATGGAAACTCCCAACAATTCAATCAAT
22266920 TCGCAATTTGAAGCTTTGGTTCAAGCGCAATCTTCGATCCAAAACTCAGTGTTACCGGTGGCAGC
66 TCGCAATTTGAAGCTTTGGTTCAAGCGCAATCTTCGATCCAAAACTCAGTGTTACCGGTGGCAGC
22266985 TGCTGTAAGTGTAACAACTAGTTTTCAGTTTGTGATTCACTTTTAGAAATAGAT
131 TGCTGTAAGTGTAACAACTAGTTTTCAGTTTGTGATTCACTTTTAGAAATAGAT
*
22267039 ATAAGTTTTCTAATTCTAGTTTTGTTTCTTAACAGAAAATGGAAACTCCCACCAATTCAATCAAT
1 ATAAGTTTTCTAATTCTAGTTTTGTTTCTTAACAGAAAATGGAAACTCCCAACAATTCAATCAAT
* *
22267104 TCGCAATTTGAAGCTTTGGTTCAAGTGCAATCTTCGATCCAAAACTTAGTGTTACCGGTGGCAGC
66 TCGCAATTTGAAGCTTTGGTTCAAGCGCAATCTTCGATCCAAAACTCAGTGTTACCGGTGGCAGC
22267169 TGCTGTAAGTGTAACAACTAGTTTTCAGT
131 TGCTGTAAGTGTAACAACTAGTTTTCAGT
22267198 AAAATTGGAA
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
184 155 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (184 bp):
ATAAGTTTTCTAATTCTAGTTTTGTTTCTTAACAGAAAATGGAAACTCCCAACAATTCAATCAAT
TCGCAATTTGAAGCTTTGGTTCAAGCGCAATCTTCGATCCAAAACTCAGTGTTACCGGTGGCAGC
TGCTGTAAGTGTAACAACTAGTTTTCAGTTTGTGATTCACTTTTAGAAATAGAT
Found at i:22273524 original size:20 final size:20
Alignment explanation
Indices: 22273496--22273544 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
22273486 ATGTATCCTG
*
22273496 ATTTTATTTGATTATAATCA
1 ATTTGATTTGATTATAATCA
* *
22273516 ATTTGATTTTATTTTAATCA
1 ATTTGATTTGATTATAATCA
*
22273536 AATTGATTT
1 ATTTGATTT
22273545 AATTGCCCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (20 bp):
ATTTGATTTGATTATAATCA
Found at i:22274018 original size:28 final size:30
Alignment explanation
Indices: 22273972--22274031 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 30
22273962 GATAATTTCA
*
22273972 ATATAAATTATTTAATTTAATTT-TTTTTAT
1 ATATAAATTATTTAATTT-ATTTATATTTAT
*
22274002 ATATAAA-TATTT-GTTTATTTATATTTAT
1 ATATAAATTATTTAATTTATTTATATTTAT
22274030 AT
1 AT
22274032 GTTTTTGTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 4 0.15
28 11 0.41
29 5 0.19
30 7 0.26
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (30 bp):
ATATAAATTATTTAATTTATTTATATTTAT
Found at i:22274929 original size:17 final size:17
Alignment explanation
Indices: 22274904--22274941 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
22274894 ATTTTAACCA
22274904 ATATAATAAATAA-TAAT
1 ATATAAT-AATAATTAAT
*
22274921 ATATGATAATAATTAAT
1 ATATAATAATAATTAAT
22274938 ATAT
1 ATAT
22274942 TATGTATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
ATATAATAATAATTAAT
Found at i:22278428 original size:115 final size:114
Alignment explanation
Indices: 22278216--22278428 Score: 304
Period size: 114 Copynumber: 1.9 Consensus size: 114
22278206 TAGTCACTGT
** * * **
22278216 ATATTTAGCTGATTTGTTTTAGGGTTCATAAGAAATTGTGTGATTTTTTTATATTTTTTAATTGA
1 ATATTTAGCCAATTTATTTTAGGGTTAATAAGAAATTAAGTGATTTTTTTATATTTTTTAATTGA
22278281 ATATTGATGAAACATTTCTTTCCCATGCGTGAAATGTATTCGGATAAGC
66 ATATTGATGAAACATTTCTTTCCCATGCGTGAAATGTATTCGGATAAGC
*
22278330 ATATTTAGCCAATTTATTTTAGGGTTAATAAGAAATTAAG-GATTTTTTTTTACTTTTTTAAATT
1 ATATTTAGCCAATTTATTTTAGGGTTAATAAGAAATTAAGTGATTTTTTTATA-TTTTTT-AATT
* *
22278394 -AGATATTGATGAAATATTTCTTTTCCATGCGTGAA
64 GA-ATATTGATGAAACATTTCTTTCCCATGCGTGAA
22278429 TAATAGAGTA
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
113 11 0.13
114 41 0.47
115 35 0.40
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.46
Consensus pattern (114 bp):
ATATTTAGCCAATTTATTTTAGGGTTAATAAGAAATTAAGTGATTTTTTTATATTTTTTAATTGA
ATATTGATGAAACATTTCTTTCCCATGCGTGAAATGTATTCGGATAAGC
Found at i:22278827 original size:30 final size:29
Alignment explanation
Indices: 22278778--22278837 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
22278768 AAATTGTATA
22278778 TGGGTAAATTTTATTTTTTTTAATTATTG
1 TGGGTAAATTTTATTTTTTTTAATTATTG
22278807 TGGGTAAATTTTATTTTTTTTAATTATTG
1 TGGGTAAATTTTATTTTTTTTAATTATTG
22278836 TG
1 TG
22278838 TTGGCTAGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (29 bp):
TGGGTAAATTTTATTTTTTTTAATTATTG
Found at i:22284803 original size:17 final size:18
Alignment explanation
Indices: 22284775--22284808 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22284765 CTGGTTAGTG
22284775 TTTAACTTGTTTTAATTT
1 TTTAACTTGTTTTAATTT
22284793 TTTAA-TTGTTTTAATT
1 TTTAACTTGTTTTAATT
22284809 GTGGGTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.68
Consensus pattern (18 bp):
TTTAACTTGTTTTAATTT
Found at i:22284804 original size:9 final size:9
Alignment explanation
Indices: 22284775--22284810 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
22284765 CTGGTTAGTG
22284775 TTTAACTTGT
1 TTTAA-TTGT
22284785 TTTAATT-T
1 TTTAATTGT
22284793 TTTAATTGT
1 TTTAATTGT
22284802 TTTAATTGT
1 TTTAATTGT
22284811 GGGTAAACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.32
9 12 0.48
10 5 0.20
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.67
Consensus pattern (9 bp):
TTTAATTGT
Found at i:22284873 original size:18 final size:18
Alignment explanation
Indices: 22284840--22284878 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
22284830 TCTAATTGTT
*
22284840 TTTTTTAATTTTAATT-A
1 TTTTTTAATTTAAATTCA
22284857 TTTTTTAAGTTTAAATTCA
1 TTTTTTAA-TTTAAATTCA
22284876 TTT
1 TTT
22284879 GCTAGCGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTTAATTTAAATTCA
Found at i:22291634 original size:40 final size:40
Alignment explanation
Indices: 22291574--22291757 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
22291564 TATTCGAATG
* *
22291574 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTAACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
22291614 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
22291654 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
22291694 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
22291734 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
22291758 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:22291707 original size:80 final size:80
Alignment explanation
Indices: 22291574--22291757 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
22291564 TATTCGAATG
* * *
22291574 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTAACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAG-TCCCGAAGGC
* *
22291638 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* * *
22291654 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
*
22291719 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
22291734 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22291758 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:22297750 original size:28 final size:28
Alignment explanation
Indices: 22297718--22297813 Score: 120
Period size: 28 Copynumber: 3.4 Consensus size: 28
22297708 CTCGATGTAC
* * *
22297718 CGCACACTAAGAGCCATAATCAATAACT
1 CGCACACTAAGTGCCATACTCAATATCT
* * *
22297746 CGCACACTAAGTGTCATTCTCAATATTT
1 CGCACACTAAGTGCCATACTCAATATCT
* *
22297774 TGCACACTAAGTGCCATACTCGATATCT
1 CGCACACTAAGTGCCATACTCAATATCT
22297802 CGCACACTAAGT
1 CGCACACTAAGT
22297814 CCTGTATATA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTAAGTGCCATACTCAATATCT
Found at i:22297850 original size:40 final size:40
Alignment explanation
Indices: 22297801--22297908 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 40
22297791 ACTCGATATC
**
22297801 TCGCACACTAAGT-CCTGTATATA-CCTGAAGCTATCTCGAA
1 TCGCACACTAAGTGCC-AAATATAGCC-GAAGCTATCTCGAA
*
22297841 TCGCACACTAAGTGCCAAATTTAGCCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCAAATATAGCCGAAGCTATCTCGAA
* * * * *
22297881 CCGTACACTAAGTGTCTAATTTAGCCGA
1 TCGCACACTAAGTGCCAAATATAGCCGA
22297909 TATGTCGTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 55 0.93
41 4 0.07
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCAAATATAGCCGAAGCTATCTCGAA
Found at i:22298638 original size:19 final size:19
Alignment explanation
Indices: 22298614--22298656 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
22298604 CTCGCTAAAT
22298614 AATCTCATAAGGTCCGATG
1 AATCTCATAAGGTCCGATG
*
22298633 AATCTCATAAGGTCTGATG
1 AATCTCATAAGGTCCGATG
22298652 AATCT
1 AATCT
22298657 TAGGTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
AATCTCATAAGGTCCGATG
Found at i:22300836 original size:46 final size:46
Alignment explanation
Indices: 22300780--22300952 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
22300770 TGGTTGAGCA
* * * *
22300780 TCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
22300826 TCTGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* * *
22300873 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
*
22300919 ACCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
22300953 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.56
47 27 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:22300936 original size:93 final size:93
Alignment explanation
Indices: 22300777--22300947 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
22300767 GGATGGTTGA
* * *
22300777 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAATGTCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAACGACCGAGCTCGTTGAGT
22300842 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * **
22300870 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGACCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAACGACCGAGCTCGTTGAGT
22300935 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
22300948 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAACGACCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22307883 original size:29 final size:29
Alignment explanation
Indices: 22307845--22307902 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
22307835 TTCCCGAGCC
*
22307845 TAGGGGCAAAAGTGTAATTATGCAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAGTT
*
22307874 TAGGGGCAAAAGTGTAATTTTCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAGTT
22307903 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAATTATCCAAAGTT
Found at i:22308374 original size:46 final size:46
Alignment explanation
Indices: 22308324--22308494 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
22308314 TGGTTGAGCA
*
22308324 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
22308370 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
22308416 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
22308462 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22308495 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
42 6 0.06
44 3 0.03
45 38 0.36
46 43 0.41
47 7 0.07
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:22308487 original size:92 final size:92
Alignment explanation
Indices: 22308321--22308489 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
22308311 GGATGGTTGA
*
22308321 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
22308386 TGAGTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCGAGTTCGTGAGATGTAACTAG
* * *
22308413 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
22308477 TGAGTCCGAGTTC
66 TGAGT-CGAGTTC
22308490 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 19 0.26
92 53 0.74
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:22314578 original size:19 final size:19
Alignment explanation
Indices: 22314553--22314595 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
22314543 TAAATACCTA
22314553 AGATTCATCAGACCTTATG
1 AGATTCATCAGACCTTATG
*
22314572 GGATTCATCAGACCTTATG
1 AGATTCATCAGACCTTATG
22314591 AGATT
1 AGATT
22314596 ATTTAGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (19 bp):
AGATTCATCAGACCTTATG
Found at i:22319875 original size:28 final size:28
Alignment explanation
Indices: 22319768--22319878 Score: 96
Period size: 28 Copynumber: 4.0 Consensus size: 28
22319758 AATGTCGTTG
* * *
22319768 CATACTCGATGTCTCACACACTAAGTGC
1 CATACTCAATATCTCACACACTAAGTGT
* * * *
22319796 CATAATCAATAACTCGCACACTAAGTCT
1 CATACTCAATATCTCACACACTAAGTGT
* * * ** *
22319824 CATTCTCAATGTTTCGTACTCTAAGTGT
1 CATACTCAATATCTCACACACTAAGTGT
*
22319852 CATACTCGATATCTCACACACTAAGTG
1 CATACTCAATATCTCACACACTAAGTG
22319879 CCGTACATAG
Statistics
Matches: 61, Mismatches: 22, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (28 bp):
CATACTCAATATCTCACACACTAAGTGT
Found at i:22319930 original size:40 final size:40
Alignment explanation
Indices: 22319868--22319969 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
22319858 CGATATCTCA
** ** ** * *
22319868 CACACTAAGTGCCGTACATAGCCGAAGCTTTCTCGAATCG
1 CACACTAAGTGCCAAATTTAGCCGAAGCCATATCGAACCG
*
22319908 CACACTAAGTGCCAAATTTAGCCGAAGCCATATTGAACCG
1 CACACTAAGTGCCAAATTTAGCCGAAGCCATATCGAACCG
*
22319948 CACACTAAGTGTCAAATTTAGC
1 CACACTAAGTGCCAAATTTAGC
22319970 TGATATGTCG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCAAATTTAGCCGAAGCCATATCGAACCG
Found at i:22329050 original size:308 final size:307
Alignment explanation
Indices: 22328492--22329110 Score: 1220
Period size: 308 Copynumber: 2.0 Consensus size: 307
22328482 AGGAAGTATT
22328492 TTTTACGGTGTTAATCGCTCATTTTTTGGCAGCTTCACTGCATATTTTCTGATATATCTGTCTTC
1 TTTTACGGTGTTAATCGCTCATTTTTTGGCAGCTTCACTGCATATTTTCTGATATATCTGTCTTC
*
22328557 ATGGAATAACGTGGTGTGTAGGGATAGGTGGGTGTTTTTACCACCACATGATGTGATGGGATGGT
66 ATGGAATAACATGGTGTGTAGGGATAGGTGGGTGTTTTTACCACCACATGATGTGATGGGATGGT
22328622 CGGAGATGGTGTGTAGAGGATGGGGTAGGATTTGTATATCTGAATCTGATTCTGTAATCTGATAA
131 CGGAGATGGTGTGTAGAGGATGGGGTAGGATTTGTATATCTGAATCTGATTCTGTAATCTGATAA
22328687 CAAGATCTAGATTTGTATCTGTTTCTATCCGTGATTATAATTCTGTACGTTTGTATGCTTAATTC
196 CAAGATCTAGATTTGTATCTGTTTCTATCCGTGATTATAATTCTGTACGTTTGTATGCTTAATTC
22328752 TGCTGGGTTACACACTAATTTTACGTAAACTCACGTCTGTTTGTTTAA
261 TGCTGGGTTACACACTAATTTTACGTAAACTCACGTCTGTTTGTTT-A
22328800 TTTTACGGTGTTAATCGCTCATTTTTTGGCAGCTTCACTGCATATTTTCTGATATATCTGTCTTC
1 TTTTACGGTGTTAATCGCTCATTTTTTGGCAGCTTCACTGCATATTTTCTGATATATCTGTCTTC
22328865 ATGGAATAACATGGTGTGTAGGGATAGGTGGGTGTTTTTACCACCACATGATGTGATGGGATGGT
66 ATGGAATAACATGGTGTGTAGGGATAGGTGGGTGTTTTTACCACCACATGATGTGATGGGATGGT
22328930 CGGAGATGGTGTGTAGAGGATGGGGTAGGATTTGTATATCTGAATCTGATTCTGTAATCTGATAA
131 CGGAGATGGTGTGTAGAGGATGGGGTAGGATTTGTATATCTGAATCTGATTCTGTAATCTGATAA
22328995 CAAGATCTAGATTTGTATCTGTTTCTATCCGTGATTATAATTCTGTACGTTTGTATGCTTAATTC
196 CAAGATCTAGATTTGTATCTGTTTCTATCCGTGATTATAATTCTGTACGTTTGTATGCTTAATTC
22329060 TGCTGGGTTACACACTAATTTTACGTAAACTCACGTCTGTTTGTTTA
261 TGCTGGGTTACACACTAATTTTACGTAAACTCACGTCTGTTTGTTTA
22329107 TTTT
1 TTTT
22329111 GTTAGGTAAT
Statistics
Matches: 310, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
307 5 0.02
308 305 0.98
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.40
Consensus pattern (307 bp):
TTTTACGGTGTTAATCGCTCATTTTTTGGCAGCTTCACTGCATATTTTCTGATATATCTGTCTTC
ATGGAATAACATGGTGTGTAGGGATAGGTGGGTGTTTTTACCACCACATGATGTGATGGGATGGT
CGGAGATGGTGTGTAGAGGATGGGGTAGGATTTGTATATCTGAATCTGATTCTGTAATCTGATAA
CAAGATCTAGATTTGTATCTGTTTCTATCCGTGATTATAATTCTGTACGTTTGTATGCTTAATTC
TGCTGGGTTACACACTAATTTTACGTAAACTCACGTCTGTTTGTTTA
Found at i:22338284 original size:28 final size:31
Alignment explanation
Indices: 22338234--22338291 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 31
22338224 TCTTTTCATT
*
22338234 TTATTATTATTATTAAATCTTTATTTATTTA
1 TTATTATTATTATTAAATCTTTATTGATTTA
*
22338265 TTATT-TTATTATT-AGT-TTTATTGATTT
1 TTATTATTATTATTAAATCTTTATTGATTT
22338292 TTTTTGATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.40
29 2 0.08
30 8 0.32
31 5 0.20
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (31 bp):
TTATTATTATTATTAAATCTTTATTGATTTA
Found at i:22349177 original size:26 final size:26
Alignment explanation
Indices: 22349148--22349198 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
22349138 GACCAATTCC
*
22349148 TATAAACATTTCACACAACCATTTTG
1 TATAAACAATTCACACAACCATTTTG
* * *
22349174 TATAACCAATTCATATAACCATTTT
1 TATAAACAATTCACACAACCATTTT
22349199 TCATCTGGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.39, C:0.22, G:0.02, T:0.37
Consensus pattern (26 bp):
TATAAACAATTCACACAACCATTTTG
Found at i:22349347 original size:46 final size:46
Alignment explanation
Indices: 22349295--22349506 Score: 255
Period size: 46 Copynumber: 4.6 Consensus size: 46
22349285 TGCCATAGTG
* * * *
22349295 TCTTTCAACTATGGTCTTATTCGTTTCCCGTCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCACGTCACGTTGTCATGGTA
* * * *
22349341 TCTTTCAACCATGGTATTATTCATTTCCCATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCACGTCACGTTGTCATGGTA
* *
22349387 TCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTG-CGATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCACGTCACGTTGTC-ATGGTA
** ** *
22349433 TCTTTCAACCATGGTCTTACACATTTCATTTCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCACGTCACGTTGTCATGGTA
**
22349479 TCTTTCAACCATGGTCTTACACATTTCA
1 TCTTTCAACCATGGTCTTATTCATTTCA
22349507 TTTCAGTAAG
Statistics
Matches: 148, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 146 0.99
47 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCATTTCACGTCACGTTGTCATGGTA
Found at i:22350092 original size:17 final size:18
Alignment explanation
Indices: 22350052--22350093 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
22350042 GATCCAAATT
* *
22350052 AATAATTTCATTCAATAT
1 AATAATTTCAATCAATAA
*
22350070 ATTAATTT-AATCAATAA
1 AATAATTTCAATCAATAA
22350087 AATAATT
1 AATAATT
22350094 CATATCCTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (18 bp):
AATAATTTCAATCAATAA
Found at i:22351615 original size:11 final size:11
Alignment explanation
Indices: 22351599--22351630 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
22351589 TATCTTTCCT
*
22351599 TAATAAAGTAA
1 TAATAAAATAA
22351610 TAATAAAATAA
1 TAATAAAATAA
22351621 TAATAAAATA
1 TAATAAAATA
22351631 TCTTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:22351653 original size:11 final size:11
Alignment explanation
Indices: 22351598--22351654 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
22351588 CTATCTTTCC
*
22351598 TTAATAAAGTA
1 TTAATAAAATA
*
22351609 ATAATAAAATA
1 TTAATAAAATA
*
22351620 ATAATAAAATA
1 TTAATAAAATA
**
22351631 TCTTTTTAAAATA
1 --TTAATAAAATA
22351644 TTAATAAAATA
1 TTAATAAAATA
22351655 ATATTTATCT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
11 29 0.78
13 8 0.22
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (11 bp):
TTAATAAAATA
Found at i:22355882 original size:39 final size:40
Alignment explanation
Indices: 22355820--22355909 Score: 112
Period size: 39 Copynumber: 2.3 Consensus size: 40
22355810 CTTTGATCGT
* *
22355820 CACTAAGTGTACAGTTGGAAATAGCTCCGGCTACA-AAGG
1 CACTAAGTGTGCAGTTGGAAATAGCTCCAGCTACATAAGG
* * *
22355859 CACTAAGTGTGCGAGTTGG-AATAGCTTCAGCTATATGAGG
1 CACTAAGTGTGC-AGTTGGAAATAGCTCCAGCTACATAAGG
22355899 CACTAAGTGTG
1 CACTAAGTGTG
22355910 TGATACTGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
39 24 0.55
40 20 0.45
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (40 bp):
CACTAAGTGTGCAGTTGGAAATAGCTCCAGCTACATAAGG
Found at i:22356599 original size:18 final size:18
Alignment explanation
Indices: 22356567--22356622 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
22356557 TTTATTCATT
*
22356567 AATATAATAATATAATATC
1 AATA-AATAAAATAATATC
* *
22356586 AATTAATTAAATAATGAT-
1 AATAAATAAAATAAT-ATC
22356604 AATAAATAAAATAAATATC
1 AATAAATAAAAT-AATATC
22356623 TATTTAATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 21 0.72
19 8 0.28
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (18 bp):
AATAAATAAAATAATATC
Found at i:22357178 original size:30 final size:27
Alignment explanation
Indices: 22357143--22357207 Score: 67
Period size: 30 Copynumber: 2.3 Consensus size: 27
22357133 TTTTCTTTAA
*
22357143 TATAATATCTTAATTTTAATTAATATAATT
1 TATAATATCTTAA--TTAAATAATAT-ATT
* * *
22357173 TATAATGTTTTAATTAAATAATATTTT
1 TATAATATCTTAATTAAATAATATATT
22357200 TATAATAT
1 TATAATAT
22357208 AAATCAAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 9 0.30
28 10 0.33
30 11 0.37
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (27 bp):
TATAATATCTTAATTAAATAATATATT
Found at i:22358734 original size:15 final size:15
Alignment explanation
Indices: 22358711--22358767 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 15
22358701 AGCAAGAAGA
22358711 AAATAAAAAGATGAT
1 AAATAAAAAGATGAT
*
22358726 AAATCAAAATCTAGAAGA-
1 AAAT-AAAA---AGATGAT
22358744 AAATAAAAAGATGAT
1 AAATAAAAAGATGAT
22358759 AAATCAAAA
1 AAAT-AAAA
22358768 TCTATGGGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
14 5 0.15
15 8 0.24
16 8 0.24
17 4 0.12
18 4 0.12
19 5 0.15
ACGTcount: A:0.67, C:0.05, G:0.11, T:0.18
Consensus pattern (15 bp):
AAATAAAAAGATGAT
Found at i:22358743 original size:33 final size:33
Alignment explanation
Indices: 22358705--22358771 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
22358695 TCTTATAGCA
22358705 AGAAGAAAATAAAAAGATGATAAATCAAAATCT
1 AGAAGAAAATAAAAAGATGATAAATCAAAATCT
22358738 AGAAGAAAATAAAAAGATGATAAATCAAAATCT
1 AGAAGAAAATAAAAAGATGATAAATCAAAATCT
22358771 A
1 A
22358772 TGGGCAATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (33 bp):
AGAAGAAAATAAAAAGATGATAAATCAAAATCT
Found at i:22361256 original size:35 final size:35
Alignment explanation
Indices: 22361217--22361287 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
22361207 TATGGCTATG
22361217 AAATTAAATGGTTAAGGGATTTAAATTTTAATTTT
1 AAATTAAATGGTTAAGGGATTTAAATTTTAATTTT
22361252 AAATTAAATGGTTAAGGGATTTAAATTTTAATTTT
1 AAATTAAATGGTTAAGGGATTTAAATTTTAATTTT
22361287 A
1 A
22361288 CCATTTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (35 bp):
AAATTAAATGGTTAAGGGATTTAAATTTTAATTTT
Found at i:22365675 original size:46 final size:45
Alignment explanation
Indices: 22365608--22365776 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
22365598 CACCCCTAAG
* *
22365608 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCATAAA
* * *
22365654 TGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTGCATCCATAAA
* * *
22365701 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTGCATCCATAAA
22365747 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
22365777 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 1 0.01
46 56 0.54
47 28 0.27
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAAA
Found at i:22365719 original size:93 final size:93
Alignment explanation
Indices: 22365609--22365779 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
22365599 ACCCCTAAGT
* *
22365609 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
22365674 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
22365702 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
22365767 CGAGTTCGGATGC
66 CGAGTTCAGATGC
22365780 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:22372869 original size:46 final size:46
Alignment explanation
Indices: 22372707--22372879 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
22372697 TAACCCACCC
*** *
22372707 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCA
* * * * *
22372753 TAAATGAACTCAGACTCAACTCAGCGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
22372801 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
22372846 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22372880 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 17, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 56 0.55
47 27 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:22372874 original size:93 final size:93
Alignment explanation
Indices: 22372712--22372882 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
22372702 CACCCTAAGT
*** *
22372712 GAACTCGGACTCAACTCAACGAGCTTGGGTGTTCGCATCCATAAATGAACTCAGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
22372777 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
22372805 GAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
22372869 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
22372883 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:22378098 original size:49 final size:48
Alignment explanation
Indices: 22377994--22378353 Score: 253
Period size: 46 Copynumber: 7.6 Consensus size: 48
22377984 AGATGTCGAC
* ** * * * *
22377994 GCCATGTCCCGGACATGGTCTTACACTAGCTAGCACAT-TAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTTTCATATATCAGGCCGAT
** *
22378042 GCTGTGTCCAAGACAGGTCTTACACT-GACTTTCATATATCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAG-CTTTCATATATC-AGGCCGAT
* * * * * *
22378091 GCCGTGTCCCAGACAGGACTTACACTAGCTCTCATCTATCAGTGTCAAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCAG-GCCGAT
* * * * *
22378140 GCCATGTCCCAGACAGGTCTTACACTAAC--ACACA-A-CAAGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCAGGCCGAT
** *
22378184 GCCATGTCTTAGACAGGTCTTACACTAGCTTGT-ATATCTCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTT-TCATATATC-AGGCCGAT
* * * * * * *
22378233 G-CATGTCCCAGACATGTCTTACACTATCTCTC--GTCTCAATGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATC-AGGCCGAT
*
22378279 G-CATGTCCCAGACATGTCTTACACTAGCTTTCATA-AT-ATGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCA-GGCCGAT
*
22378325 G-CATGTCCCAGACATGTCTTACACTAGCT
1 GCCATGTCCCAGACAGGTCTTACACTAGCT
22378354 CACATACCAC
Statistics
Matches: 247, Mismatches: 50, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
44 29 0.12
45 3 0.01
46 78 0.32
47 21 0.09
48 39 0.16
49 76 0.31
50 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCAGGCCGAT
Found at i:22380202 original size:17 final size:17
Alignment explanation
Indices: 22380169--22380216 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
22380159 AATCCCTGAT
*
22380169 CAAATGTGCATG-TAAAC
1 CAAATG-GCATGCCAAAC
22380186 CAAATGGCATGCCAAAC
1 CAAATGGCATGCCAAAC
*
22380203 CTAATGGCATGCCA
1 CAAATGGCATGCCA
22380217 TACATATCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.18
17 23 0.82
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (17 bp):
CAAATGGCATGCCAAAC
Found at i:22387845 original size:30 final size:30
Alignment explanation
Indices: 22387810--22387867 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
22387800 CACGGTCATT
* *
22387810 ACACATGGGCGTGTGGCCTACCCATGTGTC
1 ACACATGGGCATGTGGACTACCCATGTGTC
*
22387840 ACACATGGGCATGTGGATTACCCATGTG
1 ACACATGGGCATGTGGACTACCCATGTG
22387868 GAACTGCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (30 bp):
ACACATGGGCATGTGGACTACCCATGTGTC
Found at i:22390444 original size:23 final size:24
Alignment explanation
Indices: 22390409--22390454 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
22390399 AAATAACTAG
*
22390409 AAATAAAGAGAA-TATAGAAAATA
1 AAATAAAGAGAATTAAAGAAAATA
22390432 AAATAAATG-GAATTAAAGAAAAT
1 AAATAAA-GAGAATTAAAGAAAAT
22390455 GGGGGAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (24 bp):
AAATAAAGAGAATTAAAGAAAATA
Found at i:22391275 original size:74 final size:74
Alignment explanation
Indices: 22391154--22391293 Score: 244
Period size: 74 Copynumber: 1.9 Consensus size: 74
22391144 CACACGGTCG
* *
22391154 TGTGGCTCGAGTTTATTGCCGTGTGTATGTCAATACTTAGGAATTTTTAGCCCTATTTCCACACG
1 TGTGGCTCGAGTTTATAGCCATGTGTATGTCAATACTTAGGAATTTTTAGCCCTATTTCCACACG
22391219 GTACGATCA
66 GTACGATCA
* *
22391228 TGTGGCTCGAGTTTATAGCCATGTGTATGTCAATACTTGGGAATTTTTAGCCCTGTTTCCACACG
1 TGTGGCTCGAGTTTATAGCCATGTGTATGTCAATACTTAGGAATTTTTAGCCCTATTTCCACACG
22391293 G
66 G
22391294 CCAAGGACAC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 62 1.00
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (74 bp):
TGTGGCTCGAGTTTATAGCCATGTGTATGTCAATACTTAGGAATTTTTAGCCCTATTTCCACACG
GTACGATCA
Found at i:22395366 original size:30 final size:30
Alignment explanation
Indices: 22395314--22395371 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
22395304 CACGATCATT
* *
22395314 ACACACGGGCGTGTAGCCTACCCATGTGTC
1 ACACACAGGCGTGTAGACTACCCATGTGTC
* * *
22395344 ACACACAGGCGTGTGGATTACCCGTGTG
1 ACACACAGGCGTGTAGACTACCCATGTG
22395372 AAACACTGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (30 bp):
ACACACAGGCGTGTAGACTACCCATGTGTC
Found at i:22396881 original size:17 final size:17
Alignment explanation
Indices: 22396856--22396892 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
22396846 ACCACGGGAT
22396856 TGTGCCACATACCCGTG
1 TGTGCCACATACCCGTG
* *
22396873 TGTGGCACATGCCCGTG
1 TGTGCCACATACCCGTG
22396890 TGT
1 TGT
22396893 TACACCTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.30, G:0.30, T:0.27
Consensus pattern (17 bp):
TGTGCCACATACCCGTG
Found at i:22399239 original size:13 final size:13
Alignment explanation
Indices: 22399221--22399245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22399211 TAATGGTATA
22399221 TTGAATCCATGAT
1 TTGAATCCATGAT
22399234 TTGAATCCATGA
1 TTGAATCCATGA
22399246 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:22400815 original size:47 final size:47
Alignment explanation
Indices: 22400761--22401870 Score: 1958
Period size: 47 Copynumber: 23.6 Consensus size: 47
22400751 TATTTGAATA
22400761 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22400808 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22400855 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22400902 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22400949 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22400996 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401043 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22401090 AATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401137 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22401184 AATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401231 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22401280 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401327 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22401374 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401421 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22401468 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401515 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22401564 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401611 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22401658 AATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401705 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22401754 AATGTGAAA--GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
22401799 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22401846 GATGTGAAAGTGTA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22401871 TCCCGAAGGG
Statistics
Matches: 1020, Mismatches: 35, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
45 52 0.05
46 1 0.00
47 834 0.82
49 133 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22403365 original size:40 final size:40
Alignment explanation
Indices: 22403319--22403539 Score: 311
Period size: 40 Copynumber: 5.6 Consensus size: 40
22403309 GAGTGAAATG
*
22403319 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
22403359 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
22403399 TCCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
22403439 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * * * *
22403479 TCCGTGCTAA-ACCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
22403518 TCC-GGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
22403540 ATCATGCTGG
Statistics
Matches: 162, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
38 4 0.02
39 38 0.23
40 120 0.74
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:22405737 original size:13 final size:13
Alignment explanation
Indices: 22405719--22405743 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22405709 TAATGGTATA
22405719 TTGAATCCATGAT
1 TTGAATCCATGAT
22405732 TTGAATCCATGA
1 TTGAATCCATGA
22405744 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:22407313 original size:47 final size:47
Alignment explanation
Indices: 22407259--22408088 Score: 1403
Period size: 47 Copynumber: 17.6 Consensus size: 47
22407249 TATTTGAATA
22407259 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407306 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407353 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407402 AATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407449 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22407496 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407543 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407590 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407637 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22407684 AATGCGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22407731 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407780 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22407827 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22407874 AATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22407921 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22407970 AATGTGAAA--GTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
22408015 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22408062 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22408089 TCCCGAAGGG
Statistics
Matches: 741, Mismatches: 34, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
45 43 0.06
47 566 0.76
49 132 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22407861 original size:331 final size:330
Alignment explanation
Indices: 22407259--22408088 Score: 1438
Period size: 331 Copynumber: 2.5 Consensus size: 330
22407249 TATTTGAATA
*
22407259 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22407324 TGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATG-CCGATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAAT
*
22407389 AGCCGATGTGATGAATATGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
128 AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
22407452 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
193 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
22407517 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
258 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
22407582 ATGTGATG
323 ATGTGATG
22407590 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
22407655 TGTGATAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATAG
66 TGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
22407720 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
130 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
22407785 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
195 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
22407850 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCGAT
260 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
22407915 GTGATG
325 GTGATG
22407921 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATA
1 AATGTGAAAGTGTATA-A-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * *
22407984 TATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
64 TATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * * *
22408049 GGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
128 AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
22408089 TCCCGAAGGG
Statistics
Matches: 479, Mismatches: 15, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
329 59 0.12
330 1 0.00
331 378 0.79
332 2 0.00
333 39 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (330 bp):
AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
TGATG
Found at i:22412221 original size:28 final size:26
Alignment explanation
Indices: 22412189--22412263 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
22412179 TGTGCAAAAC
22412189 TTCTTCTTGT-GGTTCTTTAGAAGTAGTT
1 TTCTTCTT-TAGGTTCTTT--AAGTAGTT
**
22412217 TTCTTCTTTATTTTCTTTAAGTAGTT
1 TTCTTCTTTAGGTTCTTTAAGTAGTT
**
22412243 TTCTTCTTTATTTTCTTTAAG
1 TTCTTCTTTAGGTTCTTTAAG
22412264 GAGTCATGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 29 0.66
27 1 0.02
28 14 0.32
ACGTcount: A:0.15, C:0.12, G:0.12, T:0.61
Consensus pattern (26 bp):
TTCTTCTTTAGGTTCTTTAAGTAGTT
Found at i:22412245 original size:26 final size:26
Alignment explanation
Indices: 22412209--22412263 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
22412199 GGTTCTTTAG
22412209 AAGTAGTTTTCTTCTTTATTTTCTTT
1 AAGTAGTTTTCTTCTTTATTTTCTTT
22412235 AAGTAGTTTTCTTCTTTATTTTCTTT
1 AAGTAGTTTTCTTCTTTATTTTCTTT
22412261 AAG
1 AAG
22412264 GAGTCATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (26 bp):
AAGTAGTTTTCTTCTTTATTTTCTTT
Found at i:22419087 original size:21 final size:22
Alignment explanation
Indices: 22419045--22419087 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
22419035 TTATTCTCAA
* **
22419045 ATTTCTTCTTTTACTATTTTTG
1 ATTTCTTCTATTACTAAATTTG
22419067 ATTTCTT-TATTACTAAATTTG
1 ATTTCTTCTATTACTAAATTTG
22419088 TTTATTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.63
Consensus pattern (22 bp):
ATTTCTTCTATTACTAAATTTG
Found at i:22424390 original size:11 final size:11
Alignment explanation
Indices: 22424367--22424398 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
22424357 CCAAAACAAT
22424367 AAAATCA-TTA
1 AAAATCACTTA
22424377 AAAATCACTTA
1 AAAATCACTTA
22424388 AAAATCACTTA
1 AAAATCACTTA
22424399 TATTTATCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATCACTTA
Found at i:22429495 original size:24 final size:24
Alignment explanation
Indices: 22429438--22429508 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
22429428 CTGTCAGGAG
* *
22429438 AGGATTTAGAAGTTGATAAGCGAT
1 AGGATTTAGGAGTTGATAAGGGAT
22429462 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
22429486 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
22429509 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.37, C:0.03, G:0.35, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:22431026 original size:27 final size:26
Alignment explanation
Indices: 22430925--22431036 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
22430915 AGGAAGCGTC
* * *
22430925 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
22430952 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
22430979 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
22431007 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
22431033 CTGG
1 CTGG
22431037 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:22431031 original size:54 final size:54
Alignment explanation
Indices: 22430925--22431036 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
22430915 AGGAAGCGTC
* * *
22430925 CTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
22430979 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
22431033 CTGG
1 CTGG
22431037 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:22435915 original size:24 final size:24
Alignment explanation
Indices: 22435883--22435957 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
22435873 AAGTCTATCA
22435883 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGTTGATAAG
22435907 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGTTGATAAG
**
22435931 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGTTGATAAG
22435955 GGA
1 GGA
22435958 GGAAATCTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.35, C:0.01, G:0.39, T:0.25
Consensus pattern (24 bp):
GGATAGGATTTAGGAGTTGATAAG
Found at i:22437414 original size:27 final size:27
Alignment explanation
Indices: 22437374--22437484 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
22437364 AGGAAGCGTC
*
22437374 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
22437401 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
22437428 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
22437456 CT-GTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
22437481 CTGG
1 CTGG
22437485 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
25 3 0.04
26 12 0.16
27 52 0.71
28 6 0.08
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:22437466 original size:54 final size:53
Alignment explanation
Indices: 22437374--22437484 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 53
22437364 AGGAAGCGTC
* *
22437374 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
22437428 CTGGTGGCTCTGCCACGATTATCTGTATCT-GTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
22437481 CTGG
1 CTGG
22437485 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
53 11 0.22
54 36 0.71
55 4 0.08
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:22445316 original size:31 final size:31
Alignment explanation
Indices: 22445278--22445338 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
22445268 AAGCCAAAAA
22445278 TATCGATTTGGTATTGATACTTTTTGTCAAG
1 TATCGATTTGGTATTGATACTTTTTGTCAAG
*
22445309 TATCGATTTGGTATTGATATTTTTTGTCAA
1 TATCGATTTGGTATTGATACTTTTTGTCAA
22445339 ATATTGATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.08, G:0.18, T:0.51
Consensus pattern (31 bp):
TATCGATTTGGTATTGATACTTTTTGTCAAG
Found at i:22454006 original size:126 final size:126
Alignment explanation
Indices: 22453781--22454041 Score: 486
Period size: 126 Copynumber: 2.1 Consensus size: 126
22453771 AATATCTCAG
22453781 CTTGAATTAAGTTTGGGTTCCTGGCATGTACCTAAGCTAGGTCTTGTGGTTTATTGTTATTCTTG
1 CTTGAATTAAGTTTGGGTTCCTGGCATGTACCTAAGCTAGGTCTTGTGGTTTATTGTTATTCTTG
*
22453846 ATGCTTTTGGGTTCATTTTAATAACTTGACCTTATAATGTTTTAATGATGGATTCTGGATC
66 ATGCTTTTCGGTTCATTTTAATAACTTGACCTTATAATGTTTTAATGATGGATTCTGGATC
* *
22453907 CTTGAATTAAGTTTGGGTTCTTGGCATGTACCTAAGTTAGGTCTTGTGGTTTATTGTTATTCTTG
1 CTTGAATTAAGTTTGGGTTCCTGGCATGTACCTAAGCTAGGTCTTGTGGTTTATTGTTATTCTTG
*
22453972 ATGCTTTTCGGTTCATTTTAATAACTTGACCTTATAATGTTTTAATGATGGATTCTGGATG
66 ATGCTTTTCGGTTCATTTTAATAACTTGACCTTATAATGTTTTAATGATGGATTCTGGATC
22454033 CTTGAATTA
1 CTTGAATTA
22454042 GTAGGTAATA
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 131 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.46
Consensus pattern (126 bp):
CTTGAATTAAGTTTGGGTTCCTGGCATGTACCTAAGCTAGGTCTTGTGGTTTATTGTTATTCTTG
ATGCTTTTCGGTTCATTTTAATAACTTGACCTTATAATGTTTTAATGATGGATTCTGGATC
Found at i:22457948 original size:14 final size:14
Alignment explanation
Indices: 22457929--22457958 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22457919 GGGTGTGACA
*
22457929 ATATATATTAATAT
1 ATATATATGAATAT
22457943 ATATATATGAATAT
1 ATATATATGAATAT
22457957 AT
1 AT
22457959 GAATGGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
ATATATATGAATAT
Found at i:22460705 original size:20 final size:20
Alignment explanation
Indices: 22460680--22460717 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22460670 GCTGACAAAA
22460680 CAGTCACTCAAGTTTCAATT
1 CAGTCACTCAAGTTTCAATT
*
22460700 CAGTCACTCAATTTTCAA
1 CAGTCACTCAAGTTTCAA
22460718 AAAATAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (20 bp):
CAGTCACTCAAGTTTCAATT
Found at i:22460909 original size:47 final size:48
Alignment explanation
Indices: 22460847--22460942 Score: 137
Period size: 47 Copynumber: 2.0 Consensus size: 48
22460837 CTCTTCCTCT
22460847 CCCTCTTCCCTACCAT-CC-CTC-CCTACTTTGATTCTCTCTCCCTCTCC
1 CCCTCTTCCCTACCATCCCTCTCTCCTACTTTGATTCT-T-TCCCTCTCC
22460894 CCCTCTTCCGC-ACCATCCCTCTCTCCTACTTTGATTCTTTCCCTCTCC
1 CCCTCTTCC-CTACCATCCCTCTCTCCTACTTTGATTCTTTCCCTCTCC
22460942 C
1 C
22460943 TCATTGTCCC
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
47 14 0.31
48 13 0.29
49 4 0.09
50 14 0.31
ACGTcount: A:0.08, C:0.52, G:0.03, T:0.36
Consensus pattern (48 bp):
CCCTCTTCCCTACCATCCCTCTCTCCTACTTTGATTCTTTCCCTCTCC
Found at i:22462179 original size:47 final size:46
Alignment explanation
Indices: 22462126--22462231 Score: 142
Period size: 49 Copynumber: 2.3 Consensus size: 46
22462116 GGGACGGTGG
* **
22462126 GGGAGAGGGAA-AGAATTAGAGTAGGAGGAGGGATGGTGGGGAAGA
1 GGGAGAGGGAAGAGAATCAGAGTAGGAGGAAAGATGGTGGGGAAGA
*
22462171 GGAAGAGAGGGAGAGAGAATCAGAGTAGGGGGAAAGATGGTGGGGAAGA
1 GG--GAGAGGGA-AGAGAATCAGAGTAGGAGGAAAGATGGTGGGGAAGA
22462220 GGGAGAGGGAAG
1 GGGAGAGGGAAG
22462232 GGAGAGGGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.04
46 2 0.04
47 16 0.30
48 1 0.02
49 32 0.60
ACGTcount: A:0.37, C:0.01, G:0.54, T:0.08
Consensus pattern (46 bp):
GGGAGAGGGAAGAGAATCAGAGTAGGAGGAAAGATGGTGGGGAAGA
Found at i:22462478 original size:30 final size:29
Alignment explanation
Indices: 22462449--22462503 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
22462439 CATAAATATT
*
22462449 TTTTA-AAAATAACAATTTTTCAAGTATA
1 TTTTATAAAAGAACAATTTTTCAAGTATA
* *
22462477 TTTTATAGAAGAACAATTTTTTAAGTA
1 TTTTATAAAAGAACAATTTTTCAAGTA
22462504 AATAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (29 bp):
TTTTATAAAAGAACAATTTTTCAAGTATA
Found at i:22471479 original size:26 final size:26
Alignment explanation
Indices: 22471450--22471553 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
22471440 ATTCCCATCT
*
22471450 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
22471476 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* * *
22471502 TGGAATATTTAACTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
22471528 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
22471554 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:22474515 original size:19 final size:20
Alignment explanation
Indices: 22474477--22474515 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
22474467 AATTATATCC
*
22474477 ATTTATGAACATATATACAT
1 ATTTATGAACATATAAACAT
*
22474497 ATTTATG-ACATGTAAACAT
1 ATTTATGAACATATAAACAT
22474516 TAAGCATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (20 bp):
ATTTATGAACATATAAACAT
Found at i:22478006 original size:30 final size:30
Alignment explanation
Indices: 22477972--22478031 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
22477962 TTTGGATTTC
*
22477972 TCCTATGGATATGGTTACTCGTAATCAGCA
1 TCCTATGGATATGCTTACTCGTAATCAGCA
*
22478002 TCCTATGGATATGCTTACTTGTAATCAGCA
1 TCCTATGGATATGCTTACTCGTAATCAGCA
22478032 GGGAAATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (30 bp):
TCCTATGGATATGCTTACTCGTAATCAGCA
Found at i:22478894 original size:28 final size:26
Alignment explanation
Indices: 22478863--22478931 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 26
22478853 AAAAGAAAAT
22478863 AATAATAAAAATAATGTACTATTAATAA-
1 AATAATAAAAATAATGTA-T-TT-ATAAC
*
22478891 AATAAGAAAAATAATGTATTTATAAC
1 AATAATAAAAATAATGTATTTATAAC
22478917 AATAATAGAAAATAA
1 AATAATA-AAAATAA
22478932 CAATATGTAC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
25 4 0.11
26 8 0.22
27 8 0.22
28 17 0.46
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (26 bp):
AATAATAAAAATAATGTATTTATAAC
Found at i:22479300 original size:25 final size:24
Alignment explanation
Indices: 22479192--22479399 Score: 153
Period size: 24 Copynumber: 9.1 Consensus size: 24
22479182 ATCGTATTGA
* *
22479192 ATATTAAAAGTATATATATAATAT
1 ATATTAAAAATATATACATAATAT
* * *
22479216 AGA-CAAAAATATATGCATAATAT
1 ATATTAAAAATATATACATAATAT
* * *
22479239 AGTATTGAAAGTATTTACATGAGATA-
1 A-TATTAAAAATATATACAT-A-ATAT
*
22479265 ATA-TAAAAATATATGA-ATAATGT
1 ATATTAAAAATATAT-ACATAATAT
22479288 GATATTAAAAATATATACATAATAT
1 -ATATTAAAAATATATACATAATAT
22479313 ATA-TAAAAA-ATATA-AT-AT-T
1 ATATTAAAAATATATACATAATAT
*
22479332 A-A--AAATATATATACATAATAT
1 ATATTAAAAATATATACATAATAT
22479353 ATA-T---AATATATACATAATAT
1 ATATTAAAAATATATACATAATAT
22479373 AGTATT-AAAATATATACATAATAT
1 A-TATTAAAAATATATACATAATAT
22479397 ATA
1 ATA
22479400 CATATTAGAA
Statistics
Matches: 147, Mismatches: 18, Indels: 39
0.72 0.09 0.19
Matches are distributed among these distances:
17 4 0.03
18 6 0.04
19 4 0.03
20 20 0.14
21 6 0.04
22 9 0.06
23 26 0.18
24 37 0.25
25 30 0.20
26 2 0.01
27 3 0.02
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATTAAAAATATATACATAATAT
Found at i:22479307 original size:49 final size:48
Alignment explanation
Indices: 22479193--22479399 Score: 183
Period size: 49 Copynumber: 4.5 Consensus size: 48
22479183 TCGTATTGAA
* * * * *
22479193 TATTAAAAGTATATATATAATATAGACAAAAATATATGCATAATATAG
1 TATTAAAAATATATACATAATATATATAAAAATATATGAATAATATAG
* * * *
22479241 TATTGAAAGTATTTACATGAGATA-ATATAAAAATATATGAATAATGT-G
1 TATTAAAAATATATACAT-A-ATATATATAAAAATATATGAATAATATAG
22479289 ATATTAAAAATATATACATAATATATATAAAAA-ATAT-AAT-AT-TA-
1 -TATTAAAAATATATACATAATATATATAAAAATATATGAATAATATAG
*
22479333 -A--AAATATATATACATAATATATAT---AATATAT-ACATAATATAG
1 TATTAAAAATATATACATAATATATATAAAAATATATGA-ATAATATAG
22479375 TATT-AAAATATATACATAATATATA
1 TATTAAAAATATATACATAATATATA
22479400 CATATTAGAA
Statistics
Matches: 134, Mismatches: 12, Indels: 30
0.76 0.07 0.17
Matches are distributed among these distances:
37 2 0.01
38 5 0.04
39 2 0.01
40 24 0.18
41 2 0.01
42 1 0.01
43 1 0.01
44 21 0.16
45 2 0.01
46 3 0.02
47 7 0.05
48 26 0.19
49 35 0.26
50 3 0.02
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (48 bp):
TATTAAAAATATATACATAATATATATAAAAATATATGAATAATATAG
Found at i:22479311 original size:11 final size:11
Alignment explanation
Indices: 22479297--22479403 Score: 91
Period size: 11 Copynumber: 10.1 Consensus size: 11
22479287 TGATATTAAA
22479297 AATATATACAT
1 AATATATACAT
* *
22479308 AATATATATAA
1 AATATATACAT
*
22479319 AAAATATA-AT
1 AATATATACAT
* *
22479329 -AT-TAAAAAT
1 AATATATACAT
22479338 -ATATATACAT
1 AATATATACAT
22479348 AATATAT--AT
1 AATATATACAT
22479357 AATATATACAT
1 AATATATACAT
* *
22479368 AATATAGTATTAA
1 AATATA-TA-CAT
22479381 AATATATACAT
1 AATATATACAT
22479392 AATATATACAT
1 AATATATACAT
22479403 A
1 A
22479404 TTAGAAATAA
Statistics
Matches: 77, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
8 3 0.04
9 14 0.18
10 6 0.08
11 43 0.56
12 4 0.05
13 7 0.09
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (11 bp):
AATATATACAT
Found at i:22479316 original size:13 final size:13
Alignment explanation
Indices: 22479298--22479399 Score: 73
Period size: 13 Copynumber: 7.4 Consensus size: 13
22479288 GATATTAAAA
22479298 ATATATACATAAT
1 ATATATACATAAT
* *
22479311 ATATATAAAAAAT
1 ATATATACATAAT
*
22479324 ATAATATTA-AAAAT
1 AT-ATA-TACATAAT
22479338 ATATATACATAAT
1 ATATATACATAAT
22479351 ATATATA-ATATAT
1 ATATATACATA-AT
* *
22479364 ACATAATATAGTATTAAA
1 --AT-ATATA-CA-TAAT
22479382 ATATATACATAAT
1 ATATATACATAAT
22479395 ATATA
1 ATATA
22479400 CATATTAGAA
Statistics
Matches: 73, Mismatches: 6, Indels: 20
0.74 0.06 0.20
Matches are distributed among these distances:
12 5 0.07
13 37 0.51
14 11 0.15
15 9 0.12
16 7 0.10
18 2 0.03
19 2 0.03
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:22479336 original size:16 final size:18
Alignment explanation
Indices: 22479306--22479364 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 18
22479296 AAATATATAC
22479306 ATAATATATATAAAAAAT
1 ATAATATATATAAAAAAT
22479324 AT-A-ATAT-T-AAAAAT
1 ATAATATATATAAAAAAT
* * *
22479338 AT-ATATACATAATATAT
1 ATAATATATATAAAAAAT
22479355 ATAATATATA
1 ATAATATATA
22479365 CATAATATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 9 0.27
15 4 0.12
16 5 0.15
17 7 0.21
18 8 0.24
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAATATATATAAAAAAT
Found at i:22479497 original size:3 final size:3
Alignment explanation
Indices: 22479489--22479665 Score: 88
Period size: 3 Copynumber: 59.3 Consensus size: 3
22479479 ATATACATAT
* * * *
22479489 ATA ATA ATA ATA ATA ATA ATA ATA TTG A-A ATA CA-A A-A AAA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * * * *
22479532 AT- ATA AT- ATA ATA AAA ATG ATA A-A GTA ATTA AAA ATA AT- ATT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
*
22479574 ATA TATA A-A TATA TATA CAT- ATA CATA GATA ATA A-A AAA AT- ATA
1 ATA -ATA ATA -ATA -ATA -ATA ATA -ATA -ATA ATA ATA ATA ATA ATA
*
22479618 CACTA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA ATA ATA
1 -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22479665 A
1 A
22479666 AAGTAAAAAT
Statistics
Matches: 137, Mismatches: 20, Indels: 34
0.72 0.10 0.18
Matches are distributed among these distances:
2 18 0.13
3 95 0.69
4 22 0.16
5 2 0.01
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:22480757 original size:16 final size:18
Alignment explanation
Indices: 22480736--22480768 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
22480726 CGAGTCTTGA
22480736 CTTCTTT-GGT-GCCTCT
1 CTTCTTTAGGTAGCCTCT
22480752 CTTCTTTAGGTAGCCTC
1 CTTCTTTAGGTAGCCTC
22480769 GTTCAGCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.06, C:0.30, G:0.18, T:0.45
Consensus pattern (18 bp):
CTTCTTTAGGTAGCCTCT
Found at i:22481411 original size:64 final size:64
Alignment explanation
Indices: 22481310--22481581 Score: 195
Period size: 75 Copynumber: 3.9 Consensus size: 64
22481300 AAAAAAATTG
** *
22481310 AAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATAGAAACTA
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAGAAACTA
*
22481374 AAAATACCTTAGCATGTGA-CTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 AAAATACCTCAGCATGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA------T--
*
22481438 AACATAAACTA
57 ---AGAAACTA
* * * * * *
22481449 AAAATATCTCAGCGTGTGACCCGAGGCTTAACTCACTTCTCGCAATATGAGTTGACTTTTTTGAA
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TAG-A
*
22481514 AAATAGGA
60 AACT---A
*
22481522 ACTGAAGATACCTCAGCATGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 A---AA-ATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
22481582 TTTTTGAAAA
Statistics
Matches: 168, Mismatches: 19, Indels: 34
0.76 0.09 0.15
Matches are distributed among these distances:
63 2 0.01
64 48 0.29
70 5 0.03
72 1 0.01
73 2 0.01
74 5 0.03
75 54 0.32
76 3 0.02
77 48 0.29
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (64 bp):
AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAGAAACTA
Found at i:22481630 original size:76 final size:76
Alignment explanation
Indices: 22481364--22481663 Score: 390
Period size: 76 Copynumber: 3.9 Consensus size: 76
22481354 ATATGAGTTG
*
22481364 ATAGAAACTAAAAATACCTTAGCATGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
22481429 TTTTTTTGAAAC
65 CTTTTTTGAAAA
* * * *
22481441 AT--AAACTAAAAATATCTCAGCGTGTGACCCGAGGCTTAACTCACTTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
22481504 CTTTTTTGAAAA
65 CTTTTTTGAAAA
* * * *
22481516 ATAGGAACTGAAGATACCTCAGCATGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA
22481581 -TTTTTTGAAAA
65 CTTTTTTGAAAA
* * * * *
22481592 ATAGAAATTGAAAATACCTCGGCGTGTGACACGAGGCTCAACCCACCTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
22481657 TTTTTTT
65 CTTTTTT
22481664 TTTGAAAAAG
Statistics
Matches: 197, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
75 66 0.34
76 70 0.36
77 61 0.31
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (76 bp):
ATAGAAACTAAAAATACCTCAGCATGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAC
TTTTTTGAAAA
Found at i:22481693 original size:16 final size:17
Alignment explanation
Indices: 22481668--22481702 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
22481658 TTTTTTTTTG
*
22481668 AAAAAGCAGAAATT-AA
1 AAAAAACAGAAATTGAA
22481684 AAAAAACAGAAATTGAA
1 AAAAAACAGAAATTGAA
22481701 AA
1 AA
22481703 TATCTCGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.71, C:0.06, G:0.11, T:0.11
Consensus pattern (17 bp):
AAAAAACAGAAATTGAA
Found at i:22492917 original size:17 final size:17
Alignment explanation
Indices: 22492884--22492918 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
22492874 GTTTTTATTT
*
22492884 AAAACTAAACTACAAAA
1 AAAACTAAACCACAAAA
*
22492901 AAAACTAAACCATAAAA
1 AAAACTAAACCACAAAA
22492918 A
1 A
22492919 CTTAGAGCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.71, C:0.17, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAACTAAACCACAAAA
Found at i:22493775 original size:28 final size:26
Alignment explanation
Indices: 22493744--22493812 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 26
22493734 AAAAGAAAAT
22493744 AATAATAAAAATAATGTACTATTAATAA-
1 AATAATAAAAATAATGTA-T-TT-ATAAC
*
22493772 AATAAGAAAAATAATGTATTTATAAC
1 AATAATAAAAATAATGTATTTATAAC
22493798 AATAATAGAAAATAA
1 AATAATA-AAAATAA
22493813 CAATATGTAC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
25 4 0.11
26 8 0.22
27 8 0.22
28 17 0.46
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (26 bp):
AATAATAAAAATAATGTATTTATAAC
Found at i:22493845 original size:10 final size:10
Alignment explanation
Indices: 22493830--22493860 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
22493820 TACATAAAAA
22493830 TATATATATG
1 TATATATATG
*
22493840 TATATATGTG
1 TATATATATG
22493850 TATATATATG
1 TATATATATG
22493860 T
1 T
22493861 TAATAATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (10 bp):
TATATATATG
Found at i:22494110 original size:23 final size:23
Alignment explanation
Indices: 22494079--22494122 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
22494069 ATTGAATATT
* *
22494079 AAAAGTATATATATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
22494102 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
22494123 TATTGAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:22494179 original size:24 final size:23
Alignment explanation
Indices: 22494074--22494245 Score: 134
Period size: 24 Copynumber: 7.1 Consensus size: 23
22494064 ATCGTATTGA
*
22494074 ATATTAAAAGTATATATATAATAT
1 ATATTAAAA-TATATACATAATAT
* ** *
22494098 AGACAAAAATATATGCATAATAT
1 ATATTAAAATATATACATAATAT
* * *
22494121 AGTATTGAAAGTATTTACATGGGATA-
1 A-TATT-AAAATATATACAT--AATAT
* *
22494147 ATATAAAAATATATGA-ATAATGT
1 ATATTAAAATATAT-ACATAATAT
22494170 GATATTAAAAATATATATACATAATAT
1 -ATATT--AAA-ATATATACATAATAT
22494197 ATA-TAAAATATATACATAATAT
1 ATATTAAAATATATACATAATAT
22494219 AGTATTAAAATATATACATAATAT
1 A-TATTAAAATATATACATAATAT
22494243 ATA
1 ATA
22494246 CATATTAGAA
Statistics
Matches: 116, Mismatches: 19, Indels: 27
0.72 0.12 0.17
Matches are distributed among these distances:
22 18 0.16
23 20 0.17
24 40 0.34
25 15 0.13
26 8 0.07
27 15 0.13
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.35
Consensus pattern (23 bp):
ATATTAAAATATATACATAATAT
Found at i:22494195 original size:13 final size:13
Alignment explanation
Indices: 22494179--22494245 Score: 67
Period size: 13 Copynumber: 5.6 Consensus size: 13
22494169 TGATATTAAA
22494179 AATATATATACAT
1 AATATATATACAT
22494192 AATATATAT--A-
1 AATATATATACAT
22494202 AA-ATATATACAT
1 AATATATATACAT
22494214 AATATAGTAT---T
1 AATATA-TATACAT
*
22494225 AAAATATATACAT
1 AATATATATACAT
22494238 AATATATA
1 AATATATA
22494246 CATATTAGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
9 6 0.14
10 5 0.11
11 8 0.18
12 2 0.05
13 20 0.45
14 3 0.07
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.37
Consensus pattern (13 bp):
AATATATATACAT
Found at i:22494196 original size:11 final size:11
Alignment explanation
Indices: 22494182--22494249 Score: 82
Period size: 11 Copynumber: 6.0 Consensus size: 11
22494172 TATTAAAAAT
22494182 ATATATACATA
1 ATATATACATA
* *
22494193 ATATATATAAA
1 ATATATACATA
22494204 ATATATACATA
1 ATATATACATA
* *
22494215 ATATAGTATTAAA
1 ATATA-TA-CATA
22494228 ATATATACATA
1 ATATATACATA
22494239 ATATATACATA
1 ATATATACATA
22494250 TTAGAAATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
11 36 0.77
12 4 0.09
13 7 0.15
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (11 bp):
ATATATACATA
Found at i:22494361 original size:3 final size:3
Alignment explanation
Indices: 22494355--22494541 Score: 104
Period size: 3 Copynumber: 62.0 Consensus size: 3
22494345 AAACATATAC
* * *
22494355 TAA TAA TAA TAA TAA TAA TAA CAA TAA TAG TAA TAA TAA TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
22494403 TGA -AA TACA AAA AAA T-A TAA T-A TAA TAA AAA TGA TAA -AG TAA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
22494445 TTAA AAA TAA TAC T-A TATA TAA -ATA TATA TACA T-A TACA TAGA TAA
1 -TAA TAA TAA TAA TAA TA-A TAA TA-A TA-A TA-A TAA TA-A TA-A TAA
* *
22494491 TAA -AA AAA T-A TACA CTAA TAA TAA TAG TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22494536 TAA TAA
1 TAA TAA
22494542 AAGTAAAAAT
Statistics
Matches: 143, Mismatches: 25, Indels: 32
0.71 0.12 0.16
Matches are distributed among these distances:
2 14 0.10
3 104 0.73
4 23 0.16
5 2 0.01
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:22494364 original size:21 final size:23
Alignment explanation
Indices: 22494304--22494366 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 23
22494294 CTACATAAAT
*
22494304 ATATACATATATATATATTAAAGAC
1 ATATAC-TA-ATATATAATAAAGAC
22494329 ATATAC--ATATATAATAAA-AC
1 ATATACTAATATATAATAAAGAC
22494349 ATATACTAATA-ATAATAA
1 ATATACTAATATATAATAA
22494367 TAATAATAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 8 0.23
21 18 0.51
22 3 0.09
25 6 0.17
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (23 bp):
ATATACTAATATATAATAAAGAC
Found at i:22494380 original size:18 final size:18
Alignment explanation
Indices: 22494359--22494564 Score: 102
Period size: 18 Copynumber: 11.1 Consensus size: 18
22494349 ATATACTAAT
*
22494359 AATAATAATAATAATAAC
1 AATAATAATAATAATAAA
* *
22494377 AATAATAGTAATAATAAT
1 AATAATAATAATAATAAA
* *
22494395 AATAATATTGAAATACAAAAA
1 AATAATAAT--AATA-ATAAA
22494416 AAT-ATAAT-ATAATAAA
1 AATAATAATAATAATAAA
* *
22494432 AATGATAA-AGTAATTAAA
1 AATAATAATAATAA-TAAA
*
22494450 AATAATACT-ATATATAAA
1 AATAATAATAATA-ATAAA
* *
22494468 TATATATACAT-ATACATAGAT
1 AATA-ATA-ATAATA-ATA-AA
* *
22494489 AATAA-AAAAAT-ATACACT
1 AATAATAATAATAATA-A-A
* *
22494507 AATAATAATAGTAATAAT
1 AATAATAATAATAATAAA
22494525 AATAATAATAATAATAAA
1 AATAATAATAATAATAAA
* *
22494543 AGTAAAAATAAATAAATAAA
1 AATAATAAT-AAT-AATAAA
22494563 AA
1 AA
22494565 ATAGAACAAC
Statistics
Matches: 146, Mismatches: 25, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
16 7 0.05
17 14 0.10
18 74 0.51
19 15 0.10
20 26 0.18
21 10 0.07
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AATAATAATAATAATAAA
Found at i:22494564 original size:148 final size:149
Alignment explanation
Indices: 22494300--22494567 Score: 357
Period size: 148 Copynumber: 1.8 Consensus size: 149
22494290 AATACTACAT
* * *
22494300 AAATATATACATATATATATATTAAAGACATATACATATATAATAAAACATATACTAATAATAAT
1 AAATATATACATATATAAATATTAAAGACATATACATAGATAATAAAAAATATACTAATAATAAT
* * * *
22494365 AATAATAATAACAATAATAGTAATAATAATAATAATATTGAAATACAAAAAAATATAATATAATA
66 AATAATAATAACAATAATAATAATAATAATAATAAAAATGAAATAAAAAAAAATATAATATAATA
22494430 AAAATGATAAAGTAATTAA
131 AAAATGATAAAGTAATTAA
* * *
22494449 AAATA-ATACTATATATAAATA-TATATACATATACATAGATAATAAAAAAATATAC-ACTAATA
1 AAATATATAC-ATATATAAATATTAAAGACATATACATAGATAAT-AAAAAATATACTAATAATA
* *
22494511 ATAATAGTAATAATAATAATAATAATAATAA-AAGTAAAAAT-AAATAAATAAAAAATA
64 ATAATAATAATAACAATAATAATAATAATAATAA-TAAAAATGAAATAAA-AAAAAATA
22494568 GAACAACAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
147 8 0.08
148 70 0.68
149 25 0.24
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (149 bp):
AAATATATACATATATAAATATTAAAGACATATACATAGATAATAAAAAATATACTAATAATAAT
AATAATAATAACAATAATAATAATAATAATAATAAAAATGAAATAAAAAAAAATATAATATAATA
AAAATGATAAAGTAATTAA
Found at i:22495876 original size:26 final size:27
Alignment explanation
Indices: 22495822--22495877 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
22495812 ATATCTCATG
22495822 TTACAAATAAATTCATATAATGTAATT
1 TTACAAATAAATTCATATAATGTAATT
22495849 TTACAAATAAATTCATA-AATGTAATT
1 TTACAAATAAATTCATATAATGTAATT
22495875 TTA
1 TTA
22495878 TTCTATTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 12 0.41
27 17 0.59
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (27 bp):
TTACAAATAAATTCATATAATGTAATT
Found at i:22498487 original size:19 final size:19
Alignment explanation
Indices: 22498462--22498559 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
22498452 AATCTTTAAG
22498462 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22498481 AATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22498500 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22498517 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22498536 GATATGCAATATTGAAGATAT
1 GATATGCAATCTT--AGATAT
22498557 GAT
1 GAT
22498560 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 17 0.24
19 46 0.64
21 9 0.12
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22498492 original size:36 final size:35
Alignment explanation
Indices: 22498452--22498537 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 35
22498442 ATGGAAATAT
22498452 AATCTTTAAGGATATG-CAATCTTAGATATAATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATAATATGC
*
22498488 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATG--ACAATCTTAGATATAATATGC
22498524 AATC-TTAGATATGA
1 AATCTTTAGATATGA
22498538 TATGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
33 6 0.13
34 2 0.04
35 2 0.04
36 36 0.78
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATAATATGC
Found at i:22498499 original size:14 final size:15
Alignment explanation
Indices: 22498482--22498537 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 15
22498472 CTTAGATATA
22498482 ATATG-CAATCTTAG
1 ATATGACAATCTTAG
22498496 ATATGATACAATCTTAG
1 ATATG--ACAATCTTAG
22498513 ATATGATATGCAATCTTAG
1 ATATG--A--CAATCTTAG
22498532 ATATGA
1 ATATGA
22498538 TATGCAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.14
17 18 0.49
19 14 0.38
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (15 bp):
ATATGACAATCTTAG
Found at i:22498538 original size:36 final size:36
Alignment explanation
Indices: 22498468--22498539 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
22498458 TAAGGATATG
22498468 CAATCTTAGATATAATATGCAATCTTAGATATGATA
1 CAATCTTAGATATAATATGCAATCTTAGATATGATA
*
22498504 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATAATATGCAATCTTAGATATGATA
22498540 TGCAATATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (36 bp):
CAATCTTAGATATAATATGCAATCTTAGATATGATA
Done.