Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 80 of 349
Found at i:23782125 original size:37 final size:37
Alignment explanation
Indices: 23782075--23782184 Score: 193
Period size: 37 Copynumber: 3.0 Consensus size: 37
23782065 AATATATTCT
*
23782075 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
23782112 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
23782149 GGGTAAGACCCGATAACTTCGTGTGGAGATTTTGTC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
23782185 TAAGCTAAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:23800973 original size:46 final size:46
Alignment explanation
Indices: 23800917--23801092 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
23800907 TGGTTGAGCA
*
23800917 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
23800963 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
23801010 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
23801056 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23801093 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:23801073 original size:93 final size:93
Alignment explanation
Indices: 23800914--23801085 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
23800904 GGATGGTTGA
* ***
23800914 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
23800979 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
23801007 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
23801072 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
23801086 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23804643 original size:7 final size:7
Alignment explanation
Indices: 23804625--23804654 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
23804615 TTTGTGGTTG
23804625 TGGACTTT
1 TGGAC-TT
23804633 TGGACTT
1 TGGACTT
23804640 TGGACTT
1 TGGACTT
23804647 TGGACTT
1 TGGACTT
23804654 T
1 T
23804655 ACCTCTAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.13, C:0.13, G:0.27, T:0.47
Consensus pattern (7 bp):
TGGACTT
Found at i:23807402 original size:5 final size:5
Alignment explanation
Indices: 23807347--23807392 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
23807337 ATATATTGTA
23807347 AGATT AGATT AGATT AGATT AGATT AGATT AGATT AGATT AGATT A
1 AGATT AGATT AGATT AGATT AGATT AGATT AGATT AGATT AGATT A
23807393 TTTAAATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (5 bp):
AGATT
Found at i:23820501 original size:36 final size:36
Alignment explanation
Indices: 23820434--23820507 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
23820424 GGAGGAGCAC
*
23820434 ATCAGTCAGAATAGATCCAAAATACAGCTGAACTGA
1 ATCAGTCAGAATAGATCCAAAAGACAGCTGAACTGA
**
23820470 ATCAGTCAGAATAGATCTGAAAGACTA-CTGAACTGA
1 ATCAGTCAGAATAGATCCAAAAGAC-AGCTGAACTGA
23820506 AT
1 AT
23820508 AGAGTTTACT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.22
Consensus pattern (36 bp):
ATCAGTCAGAATAGATCCAAAAGACAGCTGAACTGA
Found at i:23821446 original size:16 final size:16
Alignment explanation
Indices: 23821425--23821461 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
23821415 TATAATAAAA
*
23821425 AAATTAAATTAATGCT
1 AAATTAAATTAACGCT
23821441 AAATTAAATTAACGCT
1 AAATTAAATTAACGCT
23821457 AAATT
1 AAATT
23821462 TGAACCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.35
Consensus pattern (16 bp):
AAATTAAATTAACGCT
Found at i:23829340 original size:20 final size:20
Alignment explanation
Indices: 23829315--23829359 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
23829305 AGGATCAAAA
*
23829315 ATGAAAAGTT-GAAAATTTT
1 ATGAAAAATTCGAAAATTTT
*
23829334 GATGAAAAATTCTAAAATTTT
1 -ATGAAAAATTCGAAAATTTT
23829355 ATGAA
1 ATGAA
23829360 TACATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCGAAAATTTT
Found at i:23831490 original size:66 final size:66
Alignment explanation
Indices: 23831380--23831512 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
23831370 TTTTGAATGT
* *
23831380 TTTGGTAATGCTTCGAAACCCTATTTCAGCGACAGATACGAGTTAAGGGTGTTATATTTAGTGGT
1 TTTGGTAATGCTCCGAAACCCTATTTCAGCGACAGATACAAGTTAAGGGTGTTATATTTAGTGGT
23831445 A
66 A
*
23831446 TTTGGTAATGCTCCGAAACCCTATTTTAGCGACAGATACAAGTTAAGGGTGTTATATTTAGTGGT
1 TTTGGTAATGCTCCGAAACCCTATTTCAGCGACAGATACAAGTTAAGGGTGTTATATTTAGTGGT
23831511 A
66 A
23831512 T
1 T
23831513 CAGAGCTACT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (66 bp):
TTTGGTAATGCTCCGAAACCCTATTTCAGCGACAGATACAAGTTAAGGGTGTTATATTTAGTGGT
A
Found at i:23837486 original size:13 final size:13
Alignment explanation
Indices: 23837468--23837492 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23837458 CTAATATTTT
23837468 TCAAATTCTTTAA
1 TCAAATTCTTTAA
23837481 TCAAATTCTTTA
1 TCAAATTCTTTA
23837493 GTTGAATGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (13 bp):
TCAAATTCTTTAA
Found at i:23838722 original size:4 final size:4
Alignment explanation
Indices: 23838715--23838797 Score: 103
Period size: 4 Copynumber: 20.8 Consensus size: 4
23838705 GTGTGTGTGT
* * * *
23838715 GTGC GTGC GTGC GTGC GTGC GTGC ATGC GTGC GAGC GAGT GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* * *
23838763 GTGC GTGC TTGC GTGC GTGC GTGC ATAC GTGC GTG
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTG
23838798 TGTGTGTGTG
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 67 1.00
ACGTcount: A:0.06, C:0.23, G:0.46, T:0.25
Consensus pattern (4 bp):
GTGC
Found at i:23839684 original size:12 final size:12
Alignment explanation
Indices: 23839667--23839691 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23839657 ATCCCTTCTC
23839667 TTTATTTATATA
1 TTTATTTATATA
23839679 TTTATTTATATA
1 TTTATTTATATA
23839691 T
1 T
23839692 AATTGGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATTTATATA
Found at i:23843556 original size:12 final size:12
Alignment explanation
Indices: 23843535--23843565 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
23843525 ATTAAAAATC
23843535 ATAAACAAAAGTT
1 ATAAA-AAAAGTT
23843548 ATAAAAAAAGTT
1 ATAAAAAAAGTT
23843560 ATAAAA
1 ATAAAA
23843566 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (12 bp):
ATAAAAAAAGTT
Found at i:23843698 original size:117 final size:117
Alignment explanation
Indices: 23843565--23843806 Score: 477
Period size: 117 Copynumber: 2.1 Consensus size: 117
23843555 AAGTTATAAA
23843565 ATTTT-TAAAAATATAATTTTTTTATAAAAAAATTAACTATACCGACCCATTAAAATCTAATGCT
1 ATTTTCTAAAAATATAATTTTTTTATAAAAAAATTAACTATACCGACCCATTAAAATCTAATGCT
23843629 ATAAGATTATTAAAAAATTTGACCCCTACTCTTTTATTGGATCGAAATTATT
66 ATAAGATTATTAAAAAATTTGACCCCTACTCTTTTATTGGATCGAAATTATT
23843681 ATTTTCTAAAAATATAATTTTTTTATAAAAAAATTAACTATACCGACCCATTAAAATCTAATGCT
1 ATTTTCTAAAAATATAATTTTTTTATAAAAAAATTAACTATACCGACCCATTAAAATCTAATGCT
23843746 ATAAGATTATTAAAAAATTTGACCCCTACTCTTTTATTGGATCGAAATTATT
66 ATAAGATTATTAAAAAATTTGACCCCTACTCTTTTATTGGATCGAAATTATT
23843798 ATTTTCTAA
1 ATTTTCTAA
23843807 TAAAAAATTA
Statistics
Matches: 125, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
116 5 0.04
117 120 0.96
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.40
Consensus pattern (117 bp):
ATTTTCTAAAAATATAATTTTTTTATAAAAAAATTAACTATACCGACCCATTAAAATCTAATGCT
ATAAGATTATTAAAAAATTTGACCCCTACTCTTTTATTGGATCGAAATTATT
Found at i:23846773 original size:15 final size:15
Alignment explanation
Indices: 23846753--23846781 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23846743 AGCAATTCAG
23846753 GTATGGATCATTGGT
1 GTATGGATCATTGGT
23846768 GTATGGATCATTGG
1 GTATGGATCATTGG
23846782 AAAGTAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.34, T:0.38
Consensus pattern (15 bp):
GTATGGATCATTGGT
Found at i:23847920 original size:44 final size:43
Alignment explanation
Indices: 23847524--23847967 Score: 248
Period size: 43 Copynumber: 10.3 Consensus size: 43
23847514 TTTGAACAGA
* * * *
23847524 AAACGCCGCTAAAAGTAGATACCTTTAGCGACGCTTT-ACCAT
1 AAACGCCGCTAAAAGTACAGACCTTTAGCGACGCTTTCTCCAC
* * * * **
23847566 AAACGCCGCTAATAGTATAGACCTTTAGCGGCGCTTAGC-AAAC
1 AAACGCCGCTAAAAGTACAGACCTTTAGCGACGCTT-TCTCCAC
* * * ** **
23847609 AAACGCCACTAAAAGCACATACCTTTAGCGGGGCTTTGC-AAAC
1 AAACGCCGCTAAAAGTACAGACCTTTAGCGACGCTTT-CTCCAC
** * *
23847652 AAACGCCGCT-AAAGCTGTAGACCTTTAGCGGCGTTTTAC-CCAC
1 AAACGCCGCTAAAAG-TACAGACCTTTAGCGACGCTTT-CTCCAC
* * * ***
23847695 AAACGCCACTAAAGGTATAGACCTTTAGC-A-GCGTTTC-CGGGG
1 AAACGCCGCTAAAAGTACAGACCTTTAGCGACGC-TTTCTC-CAC
* * * *
23847737 AAAGCGCCGCTAAAAGTGCAGACCTTTAGCGACGTTTGTTTGCA-
1 AAA-CGCCGCTAAAAGTACAGACCTTTAGCGACGCTT-TCTCCAC
23847781 AAACGCCGCTAAAAGTACAGACCTTTAGCAGA-GCTTT-TGCC-C
1 AAACGCCGCTAAAAGTACAGACCTTTAGC-GACGCTTTCT-CCAC
* ** * * * * *
23847823 AAAAGGGCCGCTAAATTTACAGACCTATAGCGGCGCTTACACCAA
1 -AAA-CGCCGCTAAAAGTACAGACCTTTAGCGACGCTTTCTCCAC
*
23847868 AAACGCCGCCAAAAGTACAGACCTTTTAGCGACGCTTTCTCCAC
1 AAACGCCGCTAAAAGTACAGACC-TTTAGCGACGCTTTCTCCAC
* * * * *
23847912 AAATGCCGCCAAAAGTAGAGTCCTTTAGCGGCGCTTTC-CCTAC
1 AAACGCCGCTAAAAGTACAGACCTTTAGCGACGCTTTCTCC-AC
* *
23847955 AAATGCCACTAAA
1 AAACGCCGCTAAA
23847968 TTTATAGATT
Statistics
Matches: 312, Mismatches: 68, Indels: 43
0.74 0.16 0.10
Matches are distributed among these distances:
41 4 0.01
42 46 0.15
43 183 0.59
44 77 0.25
45 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTACAGACCTTTAGCGACGCTTTCTCCAC
Found at i:23847920 original size:87 final size:87
Alignment explanation
Indices: 23847780--23847947 Score: 200
Period size: 87 Copynumber: 1.9 Consensus size: 87
23847770 GTTTGTTTGC
* * **
23847780 AAAACGCCGCTAAAAGTACAGACCTTTAGCAGAGCTTTTGCCCAAAAGGGCCGCTAAATTTACAG
1 AAAACGCCGCCAAAAGTACAGACCTTTAGCAGAGCTTTTGCCCAAAAGGGCCGCCAAAAGTACAG
23847845 ACCTATAGCGGCGCTTACACCA
66 ACCTATAGCGGCGCTTACACCA
*
23847867 AAAACGCCGCCAAAAGTACAGACCTTTTAGC-GACGC-TTT-CTCCACAAA-TGCCGCCAAAAGT
1 AAAACGCCGCCAAAAGTACAGACC-TTTAGCAGA-GCTTTTGC-CCA-AAAGGGCCGCCAAAAGT
* * *
23847928 AGAGTCCTTTAGCGGCGCTT
62 ACAGACCTATAGCGGCGCTT
23847948 TCCCTACAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
86 1 0.01
87 57 0.83
88 11 0.16
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (87 bp):
AAAACGCCGCCAAAAGTACAGACCTTTAGCAGAGCTTTTGCCCAAAAGGGCCGCCAAAAGTACAG
ACCTATAGCGGCGCTTACACCA
Found at i:23847957 original size:43 final size:44
Alignment explanation
Indices: 23847840--23847961 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
23847830 CCGCTAAATT
* * * *
23847840 TACAGACC-TATAGCGGCGCTTACACCAAAAACGCCGCCAAAAG
1 TACAGACCTTTTAGCGGCGCTTTCACCACAAATGCCGCCAAAAG
* *
23847883 TACAGACCTTTTAGCGACGCTTTCTCCACAAATGCCGCCAAAAG
1 TACAGACCTTTTAGCGGCGCTTTCACCACAAATGCCGCCAAAAG
* *
23847927 TAGAGTCC-TTTAGCGGCGCTTTC-CCTACAAATGCC
1 TACAGACCTTTTAGCGGCGCTTTCACC-ACAAATGCC
23847962 ACTAAATTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.03
43 31 0.46
44 35 0.51
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (44 bp):
TACAGACCTTTTAGCGGCGCTTTCACCACAAATGCCGCCAAAAG
Found at i:23853926 original size:9 final size:9
Alignment explanation
Indices: 23853912--23854042 Score: 109
Period size: 9 Copynumber: 13.9 Consensus size: 9
23853902 ATGTATTAGT
23853912 TAAGTTATG
1 TAAGTTATG
23853921 TAAGTTATG
1 TAAGTTATG
*
23853930 TGAGTTATG
1 TAAGTTATG
*
23853939 TAAGTTGTTATA
1 TAA---GTTATG
*
23853951 TACGTTATG
1 TAAGTTATG
* *
23853960 TGAGTTATA
1 TAAGTTATG
*
23853969 TAAATTATG
1 TAAGTTATG
23853978 TAAGTTATG
1 TAAGTTATG
23853987 TAAGTTATG
1 TAAGTTATG
*
23853996 TAGGTTGTTATG
1 TA---AGTTATG
*
23854008 TAAATTATG
1 TAAGTTATG
*
23854017 TAAGTTACG
1 TAAGTTATG
*
23854026 TGAGTTATG
1 TAAGTTATG
*
23854035 TAACTTAT
1 TAAGTTAT
23854043 TTTTAATGAT
Statistics
Matches: 95, Mismatches: 21, Indels: 12
0.74 0.16 0.09
Matches are distributed among these distances:
9 80 0.84
12 15 0.16
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:23854006 original size:48 final size:48
Alignment explanation
Indices: 23853912--23854043 Score: 149
Period size: 48 Copynumber: 2.8 Consensus size: 48
23853902 ATGTATTAGT
* *
23853912 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTGTTATATACGTTATG
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATTAGATACGTTATG
* * * * * *
23853960 TGAGTTATATAAATTATGTAAGTTATGTAAGTTATGTAGGT-TGTTATG
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTAT-TAGATACGTTATG
* * *
23854008 TAAATTATGTAAGTTACGTGAGTTATGTAACTTATT
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATT
23854044 TTTAATGATC
Statistics
Matches: 68, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 64 0.94
49 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (48 bp):
TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATTAGATACGTTATG
Found at i:23854034 original size:57 final size:57
Alignment explanation
Indices: 23853912--23854042 Score: 163
Period size: 57 Copynumber: 2.3 Consensus size: 57
23853902 ATGTATTAGT
* ** * *
23853912 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTGTTATATACGTTATGTGAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
* * * *
23853969 TAAATTATGTAAGTTATGTAAGTTATGTAGGTTGTTATGTAAATTATGTAAGTTACG
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
* *
23854026 TGAGTTATGTAACTTAT
1 TAAGTTATGTAAGTTAT
23854043 TTTTAATGAT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (57 bp):
TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
Found at i:23855750 original size:46 final size:46
Alignment explanation
Indices: 23855700--23855868 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
23855690 TGAGCATCCG
23855700 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAA
* * * *
23855746 CTCGTTGAGTTGAGT-CGAGTTC-GTGA--AATG-TAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCGAA
* * * *
23855792 CTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAA
23855838 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23855869 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 7 0.07
46 70 0.70
47 7 0.07
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAA
Found at i:23858409 original size:15 final size:15
Alignment explanation
Indices: 23858389--23858429 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
23858379 CTTGCGAGAT
23858389 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
23858404 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
23858419 GGATAAAGAAA
1 GAATAAAGAAA
23858430 CCCAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:23858438 original size:15 final size:15
Alignment explanation
Indices: 23858391--23858438 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
23858381 TGCGAGATGA
23858391 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
23858405 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
23858421 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
23858436 ATA
1 ATA
23858439 CAATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:23862417 original size:28 final size:29
Alignment explanation
Indices: 23862359--23862431 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
23862349 TGTATCTTGG
* * *
23862359 TTCTTTATCCTGGATCTCTTTATTCTGGAT
1 TTCTTTATTCTGG-TTTCTCTATTCTGGAT
23862389 TTCTTTATTCTGGTTTCTCTA-TCTGGAT
1 TTCTTTATTCTGGTTTCTCTATTCTGGAT
23862417 TTCTTTATTC-GGTTT
1 TTCTTTATTCTGGTTT
23862432 TCTTGTTATC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 5 0.12
28 17 0.43
29 6 0.15
30 12 0.30
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.58
Consensus pattern (29 bp):
TTCTTTATTCTGGTTTCTCTATTCTGGAT
Found at i:23862419 original size:14 final size:15
Alignment explanation
Indices: 23862359--23862435 Score: 97
Period size: 15 Copynumber: 5.3 Consensus size: 15
23862349 TGTATCTTGG
*
23862359 TTCTTTATCCTGGAT
1 TTCTTTATTCTGGAT
*
23862374 CTCTTTATTCTGGAT
1 TTCTTTATTCTGGAT
23862389 TTCTTTATTCTGG-T
1 TTCTTTATTCTGGAT
*
23862403 TTCTCTA-TCTGGAT
1 TTCTTTATTCTGGAT
*
23862417 TTCTTTATTC-GGTT
1 TTCTTTATTCTGGAT
23862431 TTCTT
1 TTCTT
23862436 GTTATCTTGT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
13 5 0.09
14 22 0.41
15 27 0.50
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.58
Consensus pattern (15 bp):
TTCTTTATTCTGGAT
Found at i:23864946 original size:92 final size:93
Alignment explanation
Indices: 23864777--23864946 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
23864767 GGATGGTTGA
* *
23864777 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23864842 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
23864870 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23864934 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23864947 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 40 0.54
93 34 0.46
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:23867844 original size:25 final size:26
Alignment explanation
Indices: 23867789--23867844 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
23867779 TTATAATTAA
* *
23867789 ATTAATATAATATATAAAAATTTAGG
1 ATTAATATAAGATAAAAAAATTTAGG
* *
23867815 A-TAATATTAGATAAAAAAATTT-TG
1 ATTAATATAAGATAAAAAAATTTAGG
23867839 ATTAAT
1 ATTAAT
23867845 TAAAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 2 0.08
25 22 0.88
26 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (26 bp):
ATTAATATAAGATAAAAAAATTTAGG
Found at i:23870363 original size:47 final size:47
Alignment explanation
Indices: 23870305--23870609 Score: 439
Period size: 47 Copynumber: 6.4 Consensus size: 47
23870295 TTGATGTACA
* * *
23870305 AAAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * * *
23870352 AAAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTG
1 AAAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * * * *
23870401 AAAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
23870448 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * *
23870495 AAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
23870542 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
23870589 AAAGTGTATAGATGTGATAAG
1 AAAGTGTATATATGTGATAAG
23870610 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 193 0.81
49 46 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
Found at i:23873797 original size:7 final size:7
Alignment explanation
Indices: 23873785--23873830 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
23873775 ACAAAATCAG
23873785 ACCCTAA
1 ACCCTAA
23873792 ACCCTAA
1 ACCCTAA
* *
23873799 ATCTTAA
1 ACCCTAA
23873806 ACCCTAA
1 ACCCTAA
*
23873813 ACTCTAA
1 ACCCTAA
*
23873820 ACCATAA
1 ACCCTAA
23873827 ACCC
1 ACCC
23873831 CTAACCTTAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:23873810 original size:21 final size:21
Alignment explanation
Indices: 23873785--23873857 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
23873775 ACAAAATCAG
*
23873785 ACCCTAAACCCTAAATCTTAA
1 ACCCTAAACCCTAAAACTTAA
* * *
23873806 ACCCTAAACTCTAAACCATAA
1 ACCCTAAACCCTAAAACTTAA
*
23873827 ACCCCT-AACCTTATAAACATTAA
1 A-CCCTAAACCCTA-AAAC-TTAA
23873850 ACCCTAAA
1 ACCCTAAA
23873858 TTCTAGATAC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
21 24 0.59
22 11 0.27
23 6 0.15
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.22
Consensus pattern (21 bp):
ACCCTAAACCCTAAAACTTAA
Found at i:23874329 original size:14 final size:14
Alignment explanation
Indices: 23874312--23874355 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
23874302 TTAACTTATC
*
23874312 CCCTATCCCTTAAA
1 CCCTAACCCTTAAA
*
23874326 CCCTAACCCCT-AA
1 CCCTAACCCTTAAA
23874339 CCACTAACCCTTAAA
1 CC-CTAACCCTTAAA
23874354 CC
1 CC
23874356 TTAATACCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 4 0.16
14 17 0.68
15 4 0.16
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.20
Consensus pattern (14 bp):
CCCTAACCCTTAAA
Found at i:23875140 original size:15 final size:15
Alignment explanation
Indices: 23875113--23875246 Score: 54
Period size: 15 Copynumber: 9.1 Consensus size: 15
23875103 AACACGAAAC
23875113 CCCT-AACCACT-AA
1 CCCTAAACCACTAAA
*
23875126 CCCTTAAACCCCTAAA
1 CCC-TAAACCACTAAA
23875142 CCCTAAACCA-TAAAA
1 CCCTAAACCACT-AAA
* * *
23875157 ACATAAACCA-TGAA
1 CCCTAAACCACTAAA
23875171 CCCTTAAA-C-CTAAA
1 CCC-TAAACCACTAAA
*
23875185 CCATAAACC-CTTAATA
1 CCCTAAACCAC-TAA-A
*
23875201 CCGCTAAA-CATTAAGA
1 CC-CTAAACCACTAA-A
* *
23875217 TCATAAA-CACTAAA
1 CCCTAAACCACTAAA
*
23875231 CACTAAA-CACTAAA
1 CCCTAAACCACTAAA
23875245 CC
1 CC
23875247 TCAAACCCAA
Statistics
Matches: 91, Mismatches: 19, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
13 7 0.08
14 26 0.29
15 40 0.44
16 14 0.15
17 4 0.04
ACGTcount: A:0.47, C:0.33, G:0.02, T:0.18
Consensus pattern (15 bp):
CCCTAAACCACTAAA
Found at i:23875145 original size:7 final size:7
Alignment explanation
Indices: 23875124--23875246 Score: 50
Period size: 7 Copynumber: 16.6 Consensus size: 7
23875114 CCTAACCACT
23875124 AACCCTTA
1 AACCC-TA
23875132 AACCCCTA
1 AA-CCCTA
23875140 AACCCTA
1 AACCCTA
*
23875147 AACCATAA
1 AACCCT-A
* *
23875155 AAACATA
1 AACCCTA
* *
23875162 AACCATG
1 AACCCTA
23875169 AACCCTTA
1 AACCC-TA
23875177 AA-CCTA
1 AACCCTA
*
23875183 AACCATA
1 AACCCTA
23875190 AACCCTTA
1 AACCC-TA
23875198 ATACCGCTA
1 A-ACC-CTA
**
23875207 AACATTA
1 AACCCTA
* *
23875214 AGATCATA
1 A-ACCCTA
*
23875222 AACACTA
1 AACCCTA
*
23875229 AACACTA
1 AACCCTA
*
23875236 AACACTA
1 AACCCTA
23875243 AACC
1 AACC
23875247 TCAAACCCAA
Statistics
Matches: 90, Mismatches: 17, Indels: 17
0.73 0.14 0.14
Matches are distributed among these distances:
6 4 0.04
7 52 0.58
8 24 0.27
9 9 0.10
10 1 0.01
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (7 bp):
AACCCTA
Found at i:23875184 original size:21 final size:21
Alignment explanation
Indices: 23875155--23875198 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
23875145 TAAACCATAA
*
23875155 AAACATAAACCATGAACCCTT
1 AAACATAAACCATAAACCCTT
*
23875176 AAACCTAAACCATAAACCCTT
1 AAACATAAACCATAAACCCTT
23875197 AA
1 AA
23875199 TACCGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.30, G:0.02, T:0.18
Consensus pattern (21 bp):
AAACATAAACCATAAACCCTT
Found at i:23875186 original size:6 final size:7
Alignment explanation
Indices: 23875138--23875193 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
23875128 CTTAAACCCC
*
23875138 TAAACCC
1 TAAACCA
23875145 TAAACCA
1 TAAACCA
*
23875152 TAAAAACA
1 T-AAACCA
23875160 TAAACCA
1 TAAACCA
* *
23875167 TGAACCCT
1 T-AAACCA
23875175 TAAACC-
1 TAAACCA
23875181 TAAACCA
1 TAAACCA
23875188 TAAACC
1 TAAACC
23875194 CTTAATACCG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
6 6 0.15
7 23 0.57
8 11 0.28
ACGTcount: A:0.52, C:0.30, G:0.02, T:0.16
Consensus pattern (7 bp):
TAAACCA
Found at i:23875329 original size:35 final size:35
Alignment explanation
Indices: 23875264--23875337 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
23875254 CAAAATAACA
** *
23875264 AAACCCTAAACCATAAAATTAACATTTTAAATCTT
1 AAACCCTAAACCATAAAATTAACACCTTAAATATT
**
23875299 AAACCCTAAACCATAGACCTTAA-ACCTTAAATATT
1 AAACCCTAAACCATA-AAATTAACACCTTAAATATT
23875334 AAAC
1 AAAC
23875338 TGTAAACCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
35 28 0.85
36 5 0.15
ACGTcount: A:0.49, C:0.23, G:0.01, T:0.27
Consensus pattern (35 bp):
AAACCCTAAACCATAAAATTAACACCTTAAATATT
Found at i:23875454 original size:41 final size:40
Alignment explanation
Indices: 23875399--23876088 Score: 763
Period size: 41 Copynumber: 16.9 Consensus size: 40
23875389 AATTCAAAAA
* * * * *
23875399 AGACGTTTAGCGGCGTTTCTCCAAAAATGCTGCTAATTCTC
1 AGACTTTTGGCGGCGTTT-TCCAAAAACGCCGCTAATGCTC
* *
23875440 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCGAATACTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
*
23875481 AGACTTTTGGCGGCGTTTTCCCAAAAACGCCGCTAATACTC
1 AGACTTTTGGCGGCGTTTT-CCAAAAACGCCGCTAATGCTC
* *
23875522 AGACTTTTGGCGGTGTTTTCCCAAAAACACCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTT-CCAAAAACGCCGCTAATGCTC
*
23875563 AGTA-TTTTGGCGGCGTTTTCCGAAAAACGCCGCTAATTCTC
1 AG-ACTTTTGGCGGCGTTTTCC-AAAAACGCCGCTAATGCTC
* * *
23875604 AGACTTTTAGCGGCGCTTTCCAAAAACGCCGCAAATGCTC
1 AGACTTTTGGCGGCGTTTTCCAAAAACGCCGCTAATGCTC
* * * *
23875644 AGACTTTTTGCGGCGTTTTTTCAACAACGCCGCTAATTCTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
* *
23875685 AGACTTTTAGCGGCGTTTTTCCAACAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
*
23875726 AGACTTTTAGCGGCGCTTTTCCAAAAA-GCCGCTAATGCTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
* * *
23875766 AGACTTTTAGCGGCGCGTTTCCAAAAACGCCGCTAATTCTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
** * *
23875807 AGACTTTTGGCGGCGTGTTTATAAAAACTCCGCTAACGCTC
1 AGACTTTTGGCGGCGT-TTTCCAAAAACGCCGCTAATGCTC
** * *
23875848 AGACTTTTGGCGGCGTTTTGGTAAAAAACGTCGCTAACGCTC
1 AGACTTTTGGCGGCGTTTT--CCAAAAACGCCGCTAATGCTC
* * * *
23875890 AGACCTTTGGCTGCGTTTTTCTAAAAACGCCGCTAACGCTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
* *
23875931 AGACTTTTGGCGGCGTTTTTCTAAAAATGCCGCTAATGCTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
** * * *
23875972 AGACTTTTGGCGGCGTTTTTGGAAAAATGCCGCGAATTCTC
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
** *
23876013 AGACTTTTGGCGGCGTTTCTTGAAAAACGCCGCTAATTCTC
1 AGACTTTTGGCGGCGTTT-TCCAAAAACGCCGCTAATGCTC
* * *
23876054 GGACTTTTGGCGGCGTTTTTTCGAAAACGCCGCTA
1 AGACTTTTGGCGGCG-TTTTCCAAAAACGCCGCTA
23876089 TTTCTCGACT
Statistics
Matches: 576, Mismatches: 60, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
40 83 0.14
41 452 0.78
42 37 0.06
43 4 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (40 bp):
AGACTTTTGGCGGCGTTTTCCAAAAACGCCGCTAATGCTC
Found at i:23875698 original size:122 final size:122
Alignment explanation
Indices: 23875399--23876112 Score: 808
Period size: 122 Copynumber: 5.8 Consensus size: 122
23875389 AATTCAAAAA
* * * * * *
23875399 AGACGTTTAGCGGCGTTTCTCCAAAAATGCTGCTAATTCTCAGACTTTTGGCGGCGTTTTTCCAA
1 AGACTTTTGGCGGCGTTTTTTCAAAAACGCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCCAA
* * * *
23875464 AAACGCCGCGAATACTCAGACTTTTGGCGGCGTTTTCCCAAAAACGCCGCTAATACTC
66 AAACGCCGCTAATGCTCAGACTTTTAGCGGCGTTTT-CCAAAAACGCCGCTAATGCTC
* ** * *
23875522 AGACTTTTGGCGGTGTTTTCCCAAAAACACCGCTAATGCTCAGTA-TTTTGGCGGCG-TTTTCCG
1 AGACTTTTGGCGGCGTTTTTTCAAAAACGCCGCTAATTCTCAG-ACTTTTGGCGGCGTTTTTCC-
* * *
23875585 AAAAACGCCGCTAATTCTCAGACTTTTAGCGGCGCTTTCCAAAAACGCCGCAAATGCTC
64 AAAAACGCCGCTAATGCTCAGACTTTTAGCGGCGTTTTCCAAAAACGCCGCTAATGCTC
* * *
23875644 AGACTTTTTGCGGCGTTTTTTCAACAACGCCGCTAATTCTCAGACTTTTAGCGGCGTTTTTCCAA
1 AGACTTTTGGCGGCGTTTTTTCAAAAACGCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCCAA
*
23875709 CAACGCCGCTAATGCTCAGACTTTTAGCGGCGCTTTTCCAAAAA-GCCGCTAATGCTC
66 AAACGCCGCTAATGCTCAGACTTTTAGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
* ** * * **
23875766 AGACTTTTAGCGGCGCGTTTCCAAAAACGCCGCTAATTCTCAGACTTTTGGCGGCGTGTTTATAA
1 AGACTTTTGGCGGCGTTTTTTCAAAAACGCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCCAA
* * * ** * *
23875831 AAACTCCGCTAACGCTCAGACTTTTGGCGGCGTTTTGGTAAAAAACGTCGCTAACGCTC
66 AAACGCCGCTAATGCTCAGACTTTTAGCGGCGTTTT--CCAAAAACGCCGCTAATGCTC
* * ** *
23875890 AGACCTTTGGCTGCG-TTTTTCTAAAAACGCCGCTAACGCTCAGACTTTTGGCGGCGTTTTTCTA
1 AGACTTTTGGCGGCGTTTTTTC-AAAAACGCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCCA
* * ** * * *
23875954 AAAATGCCGCTAATGCTCAGACTTTTGGCGGCGTTTTTGGAAAAATGCCGCGAATTCTC
65 AAAACGCCGCTAATGCTCAGACTTTTAGCGGCG-TTTTCCAAAAACGCCGCTAATGCTC
* * * * *
23876013 AGACTTTTGGCGGCGTTTCTTGAAAAACGCCGCTAATTCTCGGACTTTTGGCGGCGTTTTTTCGA
1 AGACTTTTGGCGGCGTTTTTTCAAAAACGCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCCAA
* * * *
23876078 AAACGCCGCTATTTCTC-GACTTATAGTGGCGTTTT
66 AAACGCCGCTAATGCTCAGACTTTTAGCGGCGTTTT
23876113 GGTTCAAACA
Statistics
Matches: 501, Mismatches: 79, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
121 9 0.02
122 210 0.42
123 182 0.36
124 96 0.19
125 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.30
Consensus pattern (122 bp):
AGACTTTTGGCGGCGTTTTTTCAAAAACGCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCCAA
AAACGCCGCTAATGCTCAGACTTTTAGCGGCGTTTTCCAAAAACGCCGCTAATGCTC
Found at i:23883752 original size:2 final size:2
Alignment explanation
Indices: 23883745--23883781 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
23883735 TAAAGAAGAA
*
23883745 AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
23883782 TGAAATCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23883758 original size:12 final size:12
Alignment explanation
Indices: 23883741--23883779 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
23883731 GAGATAAAGA
23883741 AGAAAGAGAGAG
1 AGAAAGAGAGAG
23883753 AGAAAGAGAGAG
1 AGAAAGAGAGAG
*
23883765 AGAGAGAGAGAG
1 AGAAAGAGAGAG
23883777 AGA
1 AGA
23883780 GATGAAATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (12 bp):
AGAAAGAGAGAG
Found at i:23887751 original size:13 final size:12
Alignment explanation
Indices: 23887716--23887752 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
23887706 TCTCTTTTCG
*
23887716 TTTTTAGTTTCTT
1 TTTTTA-TTTTTT
23887729 TTTTTATTTTTT
1 TTTTTATTTTTT
23887741 TTTTTATTTTTT
1 TTTTTATTTTTT
23887753 CATCACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 17 0.74
13 6 0.26
ACGTcount: A:0.08, C:0.03, G:0.03, T:0.86
Consensus pattern (12 bp):
TTTTTATTTTTT
Found at i:23888479 original size:3 final size:3
Alignment explanation
Indices: 23888471--23888498 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
23888461 CCTACTTAGT
23888471 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
23888499 TATTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:23888775 original size:27 final size:26
Alignment explanation
Indices: 23888733--23888793 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
23888723 ACCTATTTTA
*
23888733 AATTTATATATTGCTTCATTTTAAATC
1 AATTTATATATAGCTT-ATTTTAAATC
*
23888760 AATTTTTATATAGCTTATTTTAAACTC
1 AATTTATATATAGCTTATTTTAAA-TC
*
23888787 CATTTAT
1 AATTTAT
23888794 TTATTTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.33, C:0.11, G:0.03, T:0.52
Consensus pattern (26 bp):
AATTTATATATAGCTTATTTTAAATC
Found at i:23888796 original size:29 final size:29
Alignment explanation
Indices: 23888734--23888797 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
23888724 CCTATTTTAA
23888734 ATTTATATATTGCTTCATTTTAAATCAATT
1 ATTTATATA-TGCTTCATTTTAAATCAATT
*
23888764 -TTTATATA-GCTT-ATTTTAAACTCCATTT
1 ATTTATATATGCTTCATTTTAAA-T-CAATT
23888792 ATTTAT
1 ATTTAT
23888798 TTAAAAATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 8 0.27
27 5 0.17
28 4 0.13
29 13 0.43
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.55
Consensus pattern (29 bp):
ATTTATATATGCTTCATTTTAAATCAATT
Found at i:23890326 original size:46 final size:46
Alignment explanation
Indices: 23890270--23890394 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 46
23890260 TGGGCATCCA
* *
23890270 AACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCG
* * *
23890316 AACTCTTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCG
* *
23890362 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23890395 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCG
Found at i:23895539 original size:19 final size:20
Alignment explanation
Indices: 23895484--23895547 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
23895474 TGAAAAATAA
*
23895484 TTTCTGGAAAATGATTTACT
1 TTTCTAGAAAATGATTTACT
* *
23895504 TTTCTAGAAAATAATTTAAT
1 TTTCTAGAAAATGATTTACT
*
23895524 TTTTTAG-AAATGATTTACT
1 TTTCTAGAAAATGATTTACT
23895543 TTTCT
1 TTTCT
23895548 GGTGTTTGGA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 14 0.38
20 23 0.62
ACGTcount: A:0.33, C:0.08, G:0.09, T:0.50
Consensus pattern (20 bp):
TTTCTAGAAAATGATTTACT
Found at i:23895651 original size:18 final size:18
Alignment explanation
Indices: 23895625--23895667 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
23895615 AAAATCTGTT
*
23895625 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
*
23895643 TTTATATATATTACTAAA
1 TTTATATATATTAATAAA
23895661 TTTATAT
1 TTTATAT
23895668 TTTAAACTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:23902636 original size:39 final size:39
Alignment explanation
Indices: 23902593--23902671 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
23902583 AATGGATCAA
* *
23902593 ACATGTTGATATCATCCAATTAAAATAGACAGCTTTCAT
1 ACATGTTGATATCATCCAACTAAAATAAACAGCTTTCAT
*
23902632 ACATGTTGATATCATCCAACTAAAATAAACGGCTTTCAT
1 ACATGTTGATATCATCCAACTAAAATAAACAGCTTTCAT
23902671 A
1 A
23902672 GATTAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (39 bp):
ACATGTTGATATCATCCAACTAAAATAAACAGCTTTCAT
Found at i:23904033 original size:24 final size:23
Alignment explanation
Indices: 23904005--23904056 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
23903995 CCTTAGAAAG
*
23904005 AGAGATTTGCCTTTGCCTGAGAA
1 AGAGATTTGCCTTTGCCTAAGAA
*
23904028 ATGAGATTTGCCTTTGGCTAAGAA
1 A-GAGATTTGCCTTTGCCTAAGAA
23904052 AGAGA
1 AGAGA
23904057 GAAAAAGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (23 bp):
AGAGATTTGCCTTTGCCTAAGAA
Found at i:23917458 original size:17 final size:16
Alignment explanation
Indices: 23917428--23917459 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
23917418 TGTATGTTAG
23917428 TTTAAAATTATATATT
1 TTTAAAATTATATATT
23917444 TTTAAAATATATATAT
1 TTTAAAAT-TATATAT
23917460 ATATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAAAATTATATATT
Found at i:23918229 original size:19 final size:18
Alignment explanation
Indices: 23918203--23918433 Score: 81
Period size: 20 Copynumber: 11.9 Consensus size: 18
23918193 TTTTGGTACA
23918203 ATAATTTTTATATTTTTT
1 ATAATTTTTATATTTTTT
23918221 ATGAA-TTTTATATTTCTTT
1 AT-AATTTTTATATTT-TTT
*
23918240 ATATTTTTTATAATTTTCTT
1 ATAATTTTTAT-ATTTT-TT
* * **
23918260 ACTACTTTATA-AAATTTT
1 A-TAATTTTTATATTTTTT
* * * **
23918278 ATAATTTTTTTCTATAAT
1 ATAATTTTTATATTTTTT
23918296 ACTATATATTTTATATTGTTTT
1 A-TA-AT-TTTTATATT-TTTT
*
23918318 ACT-ATTTTTATCAATTTGTT
1 A-TAATTTTTAT--ATTTTTT
** *
23918338 ATCAATTTTTAATAAATTTA
1 AT-AATTTTT-ATATTTTTT
* *
23918358 AAATATTTTTATAATTTTT
1 ATA-ATTTTTATATTTTTT
* *
23918377 ATTAAAATTTTATAATTTTT
1 A-T-AATTTTTATATTTTTT
*
23918397 ATAATTTTTATTTATTTTT
1 ATAATTTTTATAT-TTTTT
* *
23918416 ATTTATTTTTATCTTTTT
1 A-TAATTTTTATATTTTT
23918434 GCCACATGTC
Statistics
Matches: 160, Mismatches: 32, Indels: 41
0.69 0.14 0.18
Matches are distributed among these distances:
17 6 0.04
18 28 0.17
19 46 0.29
20 50 0.31
21 23 0.14
22 7 0.04
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
ATAATTTTTATATTTTTT
Found at i:23918240 original size:10 final size:9
Alignment explanation
Indices: 23918207--23918256 Score: 57
Period size: 9 Copynumber: 5.3 Consensus size: 9
23918197 GGTACAATAA
23918207 TTTTTATAT
1 TTTTTATAT
23918216 TTTTTATGA-
1 TTTTTAT-AT
*
23918225 ATTTTATAT
1 TTTTTATAT
23918234 TTCTTTATAT
1 TT-TTTATAT
23918244 TTTTTATAAT
1 TTTTTAT-AT
23918254 TTT
1 TTT
23918257 CTTACTACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.54
10 15 0.43
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (9 bp):
TTTTTATAT
Found at i:23918267 original size:28 final size:27
Alignment explanation
Indices: 23918209--23918285 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 27
23918199 TACAATAATT
* *
23918209 TTTATATTTTTTATGAATTTTATATTTC
1 TTTATATTTTTTAT-AATTTTATACTAC
*
23918237 TTTATATTTTTTATAATTTTCTTACTAC
1 TTTATATTTTTTATAATTTT-ATACTAC
**
23918265 TTTATAAAATTTTATAATTTT
1 TTTAT-ATTTTTTATAATTTT
23918286 TTTCTATAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.14
28 23 0.55
29 13 0.31
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTATATTTTTTATAATTTTATACTAC
Found at i:23918287 original size:10 final size:10
Alignment explanation
Indices: 23918203--23918405 Score: 53
Period size: 9 Copynumber: 20.9 Consensus size: 10
23918193 TTTTGGTACA
23918203 ATAA-TTTTT
1 ATAATTTTTT
23918212 AT-ATTTTTT
1 ATAATTTTTT
23918221 ATGAA--TTTT
1 AT-AATTTTTT
23918230 AT-ATTTCTTT
1 ATAATTT-TTT
23918240 AT-ATTTTTT
1 ATAATTTTTT
*
23918249 ATAATTTTCT
1 ATAATTTTTT
* **
23918259 -TACTACTTT
1 ATAATTTTTT
**
23918268 ATAAAATTTT
1 ATAATTTTTT
23918278 ATAATTTTTTTCT
1 ATAA--TTTTT-T
**
23918291 ATAA--TACT
1 ATAATTTTTT
*
23918299 AT-ATATTTT
1 ATAATTTTTT
23918308 AT-ATTGTTTT
1 ATAATT-TTTT
23918318 ACT-A-TTTTT
1 A-TAATTTTTT
*
23918327 ATCAATTTGTT
1 AT-AATTTTTT
*
23918338 ATCAATTTTTA
1 AT-AATTTTTT
*
23918349 ATAA--ATTT
1 ATAATTTTTT
*
23918357 AAAATATTTTT
1 ATAAT-TTTTT
23918368 ATAA-TTTTT
1 ATAATTTTTT
**
23918377 ATTAAAATTTT
1 A-TAATTTTTT
23918388 ATAA-TTTTT
1 ATAATTTTTT
23918397 ATAATTTTT
1 ATAATTTTT
23918406 ATTTATTTTT
Statistics
Matches: 145, Mismatches: 25, Indels: 47
0.67 0.12 0.22
Matches are distributed among these distances:
7 2 0.01
8 10 0.07
9 52 0.36
10 44 0.30
11 29 0.20
12 3 0.02
13 5 0.03
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:23918407 original size:29 final size:28
Alignment explanation
Indices: 23918323--23918427 Score: 102
Period size: 29 Copynumber: 3.5 Consensus size: 28
23918313 GTTTTACTAT
*
23918323 TTTTATCAATTTGTTATCAATTTTTAATAAA
1 TTTTAT-AATTT-TTAT-AATTTTTATTAAA
* *
23918354 TTTAAAATATTTTTATAATTTTTATTAAAA
1 TTTTATA-ATTTTTATAATTTTTATT-AAA
* *
23918384 TTTTATAATTTTTATAATTTTTATTTAT
1 TTTTATAATTTTTATAATTTTTATTAAA
*
23918412 TTTTATTTATTTTTAT
1 TTTTA-TAATTTTTAT
23918428 CTTTTTGCCA
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.10
29 36 0.57
30 13 0.21
31 8 0.13
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (28 bp):
TTTTATAATTTTTATAATTTTTATTAAA
Found at i:23918413 original size:10 final size:10
Alignment explanation
Indices: 23918321--23918427 Score: 78
Period size: 10 Copynumber: 10.8 Consensus size: 10
23918311 TTGTTTTACT
*
23918321 ATTTTTATCA
1 ATTTTTATTA
*
23918331 ATTTGTTATCA
1 ATTT-TTATTA
*
23918342 ATTTTTAATA
1 ATTTTTATTA
* **
23918352 A-ATTTAAAA
1 ATTTTTATTA
23918361 TATTTTTA-TA
1 -ATTTTTATTA
23918371 ATTTTTATTAA
1 ATTTTTATT-A
*
23918382 AATTTTA-TA
1 ATTTTTATTA
23918391 ATTTTTA-TA
1 ATTTTTATTA
*
23918400 ATTTTTATTT
1 ATTTTTATTA
*
23918410 ATTTTTATTT
1 ATTTTTATTA
23918420 ATTTTTAT
1 ATTTTTAT
23918428 CTTTTTGCCA
Statistics
Matches: 82, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
9 29 0.35
10 32 0.39
11 21 0.26
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.64
Consensus pattern (10 bp):
ATTTTTATTA
Found at i:23921094 original size:25 final size:25
Alignment explanation
Indices: 23921058--23921106 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
23921048 CCAACGATAT
*
23921058 CCAACAGTTTTAAGTATTCACATTG
1 CCAACAGTTTTAAGTAATCACATTG
*
23921083 CCAACA-TATTTAATTAATCACATT
1 CCAACAGT-TTTAAGTAATCACATT
23921107 TTATTACGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (25 bp):
CCAACAGTTTTAAGTAATCACATTG
Found at i:23921512 original size:32 final size:32
Alignment explanation
Indices: 23921451--23921532 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 32
23921441 TAGAACCATG
* *
23921451 CATATATA-TTATATATGTATAATCACCCACGT
1 CATATATATTTATATATATATAAACACCCAC-T
23921483 -ATATATATTTATATATATATACAAC-CCCACT
1 CATATATATTTATATATATATA-AACACCCACT
* *
23921514 CATATATATCTATGTATAT
1 CATATATATTTATATATAT
23921533 TACCAACTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
31 8 0.19
32 33 0.77
33 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.40
Consensus pattern (32 bp):
CATATATATTTATATATATATAAACACCCACT
Found at i:23935386 original size:16 final size:17
Alignment explanation
Indices: 23935353--23935387 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
23935343 AAATGGGCCT
23935353 TGTGGGCCACACAAGAG
1 TGTGGGCCACACAAGAG
*
23935370 TGTGGGCC-CACACGAG
1 TGTGGGCCACACAAGAG
23935386 TG
1 TG
23935388 AACCACACGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.23, C:0.26, G:0.37, T:0.14
Consensus pattern (17 bp):
TGTGGGCCACACAAGAG
Found at i:23938223 original size:41 final size:41
Alignment explanation
Indices: 23938194--23938291 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 41
23938184 GCCGTAATAT
* *
23938194 GTAAATTAGTAGCGGGGTTTATGAGAAAAACGCCACAAAAG
1 GTAAAGTAGTAGCGGCGTTTATGAGAAAAACGCCACAAAAG
* * ** *
23938235 GTCAAGTATTAGCGGCGTTTATGAGAAAAGTGCCGCAAAAG
1 GTAAAGTAGTAGCGGCGTTTATGAGAAAAACGCCACAAAAG
* * *
23938276 GTCAAGCATTAGCGGC
1 GTAAAGTAGTAGCGGC
23938292 ACCAGGAGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (41 bp):
GTAAAGTAGTAGCGGCGTTTATGAGAAAAACGCCACAAAAG
Found at i:23938312 original size:40 final size:41
Alignment explanation
Indices: 23938216--23938313 Score: 108
Period size: 41 Copynumber: 2.4 Consensus size: 41
23938206 CGGGGTTTAT
* * *** *
23938216 GAGAAAAACGCCACAAAAGGTCAAGTATTAGCGGCGTTTAT
1 GAGAAAAACGCCGCAAAAGGTCAAGCATTAGCGGCGACCAG
**
23938257 GAGAAAAGTGCCGCAAAAGGTCAAGCATTAGCGGC-ACCAG
1 GAGAAAAACGCCGCAAAAGGTCAAGCATTAGCGGCGACCAG
*
23938297 GAGAAAAACACCGCAAA
1 GAGAAAAACGCCGCAAA
23938314 GTATAATCTT
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
40 15 0.33
41 31 0.67
ACGTcount: A:0.42, C:0.20, G:0.26, T:0.12
Consensus pattern (41 bp):
GAGAAAAACGCCGCAAAAGGTCAAGCATTAGCGGCGACCAG
Found at i:23939965 original size:40 final size:40
Alignment explanation
Indices: 23939921--23940103 Score: 273
Period size: 40 Copynumber: 4.6 Consensus size: 40
23939911 GCTACTCACT
* * *
23939921 CAAATGCCTTCGGGACTTAGCCCTG-ATATAGT-AGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCA-CTAGCA
* *
23939961 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCA
23940001 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
23940041 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
23940081 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
23940104 CGTTATCATC
Statistics
Matches: 137, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
40 134 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
Found at i:23947985 original size:40 final size:40
Alignment explanation
Indices: 23947949--23948178 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
23947939 GGATATAGCT
*
23947949 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
23947989 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
23948029 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
23948069 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
23948109 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
23948149 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
23948179 CGTTATCATC
Statistics
Matches: 182, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:23948075 original size:80 final size:79
Alignment explanation
Indices: 23947923--23948178 Score: 374
Period size: 80 Copynumber: 3.2 Consensus size: 79
23947913 AAACCAAGTA
* * *
23947923 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
**
23947986 GTAGTTCGCACAAATG
64 GTAACTCGCACAAATG
23948002 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
23948067 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
23948082 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
* *
23948146 GTCACTAGCACAAATG
64 GTAACTCGCACAAATG
23948162 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
23948179 CGTTATCATC
Statistics
Matches: 164, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
79 14 0.09
80 148 0.90
81 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTCGCACAAATG
Found at i:23952363 original size:35 final size:35
Alignment explanation
Indices: 23952295--23952360 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
23952285 TAATTGTGTT
23952295 ATTAATTTATTATTTTAAATTTTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATTTTAAATTTAAATTC
*
23952330 ATTAATTT-TTATATTT-AGTTTTAAATTTAAA
1 ATTAATTTATTAT-TTTAAATTTTAAATTTAAA
23952361 ATTTTCATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 18 0.62
35 11 0.38
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTTTAAATTTAAATTC
Found at i:23952837 original size:35 final size:35
Alignment explanation
Indices: 23952792--23952858 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
23952782 AAATTTAAAG
*
23952792 ATGATAATCATAACTTACATAAACGTTTAAAGTTT
1 ATGATAATCATAACTTACATAAACATTTAAAGTTT
* *
23952827 ATGATTATCATAACTTATATAAACATTTAAAG
1 ATGATAATCATAACTTACATAAACATTTAAAG
23952859 AATAATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.37
Consensus pattern (35 bp):
ATGATAATCATAACTTACATAAACATTTAAAGTTT
Found at i:23953079 original size:43 final size:43
Alignment explanation
Indices: 23953018--23953116 Score: 153
Period size: 43 Copynumber: 2.3 Consensus size: 43
23953008 TGGGAAAAGC
* * *
23953018 AAGGTCACATTCTTTAGCGACGTTTTTGGGGAAAGCACCGCTA
1 AAGGTCATATTCTTTAGCGACGTTTGTGGGAAAAGCACCGCTA
* *
23953061 AAGGTCATGTTCTTTAGCGACGTTTGTGGGAAAAGCGCCGCTA
1 AAGGTCATATTCTTTAGCGACGTTTGTGGGAAAAGCACCGCTA
23953104 AAGGTCATATTCT
1 AAGGTCATATTCT
23953117 ATAGTAGCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
AAGGTCATATTCTTTAGCGACGTTTGTGGGAAAAGCACCGCTA
Found at i:23953837 original size:13 final size:11
Alignment explanation
Indices: 23953817--23953853 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
23953807 ATTCCATATG
23953817 AATTCACAATT
1 AATTCACAATT
23953828 AATTTTCACAATT
1 AA--TTCACAATT
23953841 AATTCACAATT
1 AATTCACAATT
23953852 AA
1 AA
23953854 ATATATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 13 0.54
13 11 0.46
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (11 bp):
AATTCACAATT
Found at i:23959117 original size:5 final size:6
Alignment explanation
Indices: 23959098--23959134 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
23959088 GCACTACTGA
23959098 TTTATT TTTATT TTTA-T TTTA-T TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
23959135 TTACAGTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:23959122 original size:16 final size:17
Alignment explanation
Indices: 23959098--23959133 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
23959088 GCACTACTGA
23959098 TTTATTTTTATTTTTAT
1 TTTATTTTTATTTTTAT
23959115 TTTA-TTTTATTTTTAT
1 TTTATTTTTATTTTTAT
23959131 TTT
1 TTT
23959134 TTTACAGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTATTTTTATTTTTAT
Found at i:23961862 original size:11 final size:11
Alignment explanation
Indices: 23961845--23961874 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
23961835 TAATGTCTTA
23961845 AGATAATCTAC
1 AGATAATCTAC
*
23961856 GGATAATCTAC
1 AGATAATCTAC
23961867 AGATAATC
1 AGATAATC
23961875 ATGCAATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (11 bp):
AGATAATCTAC
Found at i:23965559 original size:81 final size:81
Alignment explanation
Indices: 23965462--23965623 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
23965452 CATATCAAAT
23965462 CAATAATGTGGTATCGACATGTATAACTAAAGCAAGTTCTAGAATAACAAATCAAGCTGACATAC
1 CAATAATGTGGTATCGACATGTATAACTAAAGCAAGTTCTAGAATAACAAATCAAGCTGACATAC
23965527 TCACAACCAAAGATAA
66 TCACAACCAAAGATAA
*
23965543 CAATAATGTGGTATCGACATGTATAACTAAAGCAAGTTCTAGAATAACAAATCAAGTTGACATAC
1 CAATAATGTGGTATCGACATGTATAACTAAAGCAAGTTCTAGAATAACAAATCAAGCTGACATAC
23965608 TCACAACCAAAGATAA
66 TCACAACCAAAGATAA
23965624 AATGAGCAGG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.23
Consensus pattern (81 bp):
CAATAATGTGGTATCGACATGTATAACTAAAGCAAGTTCTAGAATAACAAATCAAGCTGACATAC
TCACAACCAAAGATAA
Found at i:23970023 original size:3 final size:3
Alignment explanation
Indices: 23970015--23970108 Score: 54
Period size: 3 Copynumber: 31.7 Consensus size: 3
23970005 AATTGCAGTG
* * * *
23970015 ATA ATA ATA ATT ATA ATA CA-A AGA ATA A-A CACA ATA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * *
23970060 GTA ATA ATA AAA ATA ACA A-A ATA ATA ATA ATTA ACTA A-A ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA A-TA ATA ATA ATA
23970104 ATA AT
1 ATA AT
23970109 TTAAAACTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
2 8 0.11
3 57 0.78
4 8 0.11
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:23970118 original size:21 final size:19
Alignment explanation
Indices: 23970062--23970109 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
23970052 TAATAGTAGT
*
23970062 AATAATAA-AAATAAC-AA
1 AATAATAATAATTAACTAA
23970079 AATAATAATAATTAACTAA
1 AATAATAATAATTAACTAA
23970098 AATAA-AATAATT
1 AATAATAATAATT
23970110 TAAAACTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 8 0.29
18 13 0.46
19 7 0.25
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
AATAATAATAATTAACTAA
Found at i:23973214 original size:28 final size:28
Alignment explanation
Indices: 23973172--23973250 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
23973162 GAATCATTCG
*
23973172 ATATTTCACACACTAAGTGCCATTCTCA
1 ATATCTCACACACTAAGTGCCATTCTCA
* * *
23973200 ATATCTCGCATACTAAGTGTCATTCTCA
1 ATATCTCACACACTAAGTGCCATTCTCA
* *
23973228 ATATTTCACACACTACGTGCCAT
1 ATATCTCACACACTAAGTGCCAT
23973251 ATTTGATATC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (28 bp):
ATATCTCACACACTAAGTGCCATTCTCA
Found at i:23977026 original size:20 final size:20
Alignment explanation
Indices: 23977001--23977038 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23976991 GAATGTAAAA
*
23977001 ATTAAATTAAAAACAAAATT
1 ATTAAAATAAAAACAAAATT
*
23977021 ATTAAAATAAAAATAAAA
1 ATTAAAATAAAAACAAAA
23977039 ATGATAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
ATTAAAATAAAAACAAAATT
Found at i:23977039 original size:21 final size:20
Alignment explanation
Indices: 23977001--23977048 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
23976991 GAATGTAAAA
* * *
23977001 ATTAAATTAAAAACAAAATT
1 ATTAAAATAAAAAAAAAATG
23977021 ATTAAAATAAAAATAAAAATG
1 ATTAAAATAAAAA-AAAAATG
23977042 A-TAAAAT
1 ATTAAAAT
23977049 TAACAGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (20 bp):
ATTAAAATAAAAAAAAAATG
Found at i:23979120 original size:23 final size:23
Alignment explanation
Indices: 23979090--23979137 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
23979080 ACTTTTGTGA
23979090 AAGGATTTTCATGGAAACACCTC
1 AAGGATTTTCATGGAAACACCTC
*
23979113 AAGGATTTTCATGGAATCACCTC
1 AAGGATTTTCATGGAAACACCTC
23979136 AA
1 AA
23979138 ATGAACCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (23 bp):
AAGGATTTTCATGGAAACACCTC
Found at i:23980017 original size:46 final size:48
Alignment explanation
Indices: 23979881--23980336 Score: 383
Period size: 46 Copynumber: 9.8 Consensus size: 48
23979871 CATTTCGTAT
* *
23979881 GCCAGTGTAAGACCATGTTTGGAACATAGA-ATTGGCTATGTTATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACAT-GACATCGACTATGTTATGAGA
* * * *
23979929 GTCAGT-TAAGACCATGTTTGGAACATGGCATCGTCTCTGTTATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGA
*
23979976 GCCAGTGTAAGACTATG-TTGG-ACATGACATCGACTATGTTATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGA
*
23980022 GCCAGTGTAAGACCATG-TTGG-ACATGGCATCGACTATGTTATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGA
* *
23980068 GCTAGTGTAGGACCATGTTTGGAACATGACATCGACTATGTTATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGA
* * *
23980116 GCCAGTGTAAGACCATG-TTGG-ACATGGCATCGGC-AT-TGACT-ATGA
1 GCCAGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTA-TGA-GA
* * * ***
23980161 GCCTGTGTAAGACCATG-TTGGAA-ATCG-CATCGGCCACCATATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACAT-GACATCGACTATGTTATGAGA
* * * * ** *
23980207 GCTAGTGTAAGTCCATG-TTGG-ACATGGCCTCTG--TATTGAGACGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGACATC-GACTA-TGTTATGAGA
* * * * * * ** *
23980253 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGTCT-CGGCATGCGA
1 GCCAGTGTAAGACCATGTTTGGAACATGACATC-GACTATGTTATGAGA
* *
23980301 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 GCCAGTGTAAGACCATGTTTGGAACATGACATCGAC
23980337 AATTCACCCT
Statistics
Matches: 344, Mismatches: 45, Indels: 39
0.80 0.11 0.09
Matches are distributed among these distances:
44 3 0.01
45 37 0.11
46 144 0.42
47 60 0.17
48 99 0.29
50 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGA
Found at i:23980112 original size:94 final size:95
Alignment explanation
Indices: 23979884--23980336 Score: 450
Period size: 94 Copynumber: 4.8 Consensus size: 95
23979874 TTCGTATGCC
* * *
23979884 AGTGTAAGACCATGTTTGGAACATAGA-ATTGGCTATGTTATGAGAGTCAGT-TAAGACCATGTT
1 AGTGTAAGACCATGTTTGGAACAT-GACATCGACTATGTTATGAGAGCCAGTGTAAGACCATG-T
* * *
23979947 TGGAACATGGCATCGTCT-CTGTTATGAGAGCC
64 TGG-ACATGGCATCGACTATTGTTATGAGAGCT
*
23979979 AGTGTAAGACTATG-TTGG-ACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTG
1 AGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTG
23980042 GACATGGCATCGACTA-TGTTATGAGAGCT
66 GACATGGCATCGACTATTGTTATGAGAGCT
*
23980071 AGTGTAGGACCATGTTTGGAACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTG
1 AGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTG
* * *
23980136 GACATGGCATCGGC-ATTGACTATGAG-CCT
66 GACATGGCATCGACTATTG-TTATGAGAGCT
* * *** * *
23980165 -GTGTAAGACCATG-TTGGAA-ATCG-CATCGGCCACCATATGAGAGCTAGTGTAAGTCCATGTT
1 AGTGTAAGACCATGTTTGGAACAT-GACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTT
* ** *
23980226 GGACATGGCCTCTG--TATTGAGACGAGAGCT
65 GGACATGGCATC-GACTATTGTTATGAGAGCT
* * * * * ** *
23980256 AGTGTAAGACCATGTCTGGGACATGGCATCAGTCT-CGGCATGCGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTTTGGAACATGACATC-GACTATGTTATGAGAGCCAGTGTAAGACCATG-T
23980320 TGGGACATGGCATCGAC
64 T-GGACATGGCATCGAC
23980337 AATTCACCCT
Statistics
Matches: 303, Mismatches: 35, Indels: 38
0.81 0.09 0.10
Matches are distributed among these distances:
90 4 0.01
91 50 0.17
92 60 0.20
93 51 0.17
94 103 0.34
95 24 0.08
96 11 0.04
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (95 bp):
AGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTG
GACATGGCATCGACTATTGTTATGAGAGCT
Found at i:23980229 original size:185 final size:186
Alignment explanation
Indices: 23979884--23980334 Score: 497
Period size: 185 Copynumber: 2.4 Consensus size: 186
23979874 TTCGTATGCC
* * *
23979884 AGTGTAAGACCATGTTTGGAACATAGA-ATTGGCTATGTTATGAGAGTCAGT-TAAGACCATGTT
1 AGTGTAAGACCATGTTTGGAACAT-GACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTT
* * * * *
23979947 TGGAACATGGCATCGTCTCTGTTATGAGAGCCAGTGTAAGACTATGTTGGACATGACATCGACTA
65 TGG-ACATGGCATCGGCTCTGCTAT-AGAGCCAGTGTAAGACCATGTTGGAAATGACATCGACCA
*** ** *
23980012 TGTTATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATC-G-ACTATGTTATGAGAGCT
128 CCATATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCTGTA-T-TGAGACGAGAGCT
*
23980071 AGTGTAGGACCATGTTTGGAACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATG-TT
1 AGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTT
* *
23980135 GGACATGGCATCGGCAT-TGACTAT-GAGCCTGTGTAAGACCATGTTGGAAATCG-CATCGGCCA
66 GGACATGGCATCGGC-TCTG-CTATAGAGCCAGTGTAAGACCATGTTGGAAAT-GACATCGACCA
* * *
23980197 CCATATGAGAGCTAGTGTAAGTCCATGTTGGACATGGCCTCTGTATTGAGACGAGAGCT
128 CCATATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCTGTATTGAGACGAGAGCT
* * * * * ** *
23980256 AGTGTAAGACCATGTCTGGGACATGGCATCAGTCT-CGGCATGCGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTTTGGAACATGACATC-GACTATGTTATGAGAGCCAGTGTAAGACCATGTT
23980320 TGGGACATGGCATCG
65 T-GGACATGGCATCG
23980335 ACAATTCACC
Statistics
Matches: 225, Mismatches: 29, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
185 125 0.56
186 24 0.11
187 66 0.29
188 10 0.04
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (186 bp):
AGTGTAAGACCATGTTTGGAACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTT
GGACATGGCATCGGCTCTGCTATAGAGCCAGTGTAAGACCATGTTGGAAATGACATCGACCACCA
TATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCTGTATTGAGACGAGAGCT
Found at i:23982560 original size:233 final size:233
Alignment explanation
Indices: 23982260--23982961 Score: 1246
Period size: 233 Copynumber: 3.0 Consensus size: 233
23982250 TCAATCCTCA
*
23982260 ACTTCCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
1 ACTTTCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
* *
23982325 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAACCACTATTT
66 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAGCCACTATCT
23982390 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
131 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
*
23982455 TGATGACTATTTGTGTTTTGCATTAATGAAAACAGTCC
196 TGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
23982493 ACTTTCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
1 ACTTTCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
23982558 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAGCCACTATCT
66 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAGCCACTATCT
23982623 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
131 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
*
23982688 TGATGACTATTTGTGTTTTGCATTAATTAAAATAGTCC
196 TGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
* * *
23982726 AC-TTCTATTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAAGAAAATCTAGAACATATGA
1 ACTTTCT-TTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGA
* *
23982790 ACAA-AAGCTATAACAAAAAATAAAGAAATAGGACAAGACTCCAATGCATGTATCAAGCCACTAT
65 ACAACAA-CTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAGCCACTAT
* * *
23982854 CTTAATGGTTATATTCACCCCTACCTATACTCAATGCACAAATGAACCTCAAGGATACAATGAAG
129 CTTAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAG
*
23982919 CCTGATGACTATTTGTGTTTTGCATTAATGAAAATAGTTC
194 CCTGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
23982959 ACT
1 ACT
23982962 AAGCATCGTA
Statistics
Matches: 451, Mismatches: 15, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
232 6 0.01
233 445 0.99
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (233 bp):
ACTTTCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAGCCACTATCT
TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
TGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
Found at i:23983524 original size:13 final size:14
Alignment explanation
Indices: 23983506--23983534 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
23983496 CAAAGTCGAA
23983506 TAGAAAAAA-AAAC
1 TAGAAAAAATAAAC
23983519 TAGAAAAAATAAAC
1 TAGAAAAAATAAAC
23983533 TA
1 TA
23983535 ATACTCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (14 bp):
TAGAAAAAATAAAC
Found at i:23985729 original size:6 final size:6
Alignment explanation
Indices: 23985718--23985775 Score: 98
Period size: 6 Copynumber: 9.5 Consensus size: 6
23985708 AAGATGAATA
23985718 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT
*
23985767 AATAAT AAA
1 AAAAAT AAA
23985776 TAAATAAACT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
6 44 0.90
7 5 0.10
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:23985788 original size:13 final size:14
Alignment explanation
Indices: 23985714--23985791 Score: 75
Period size: 12 Copynumber: 6.1 Consensus size: 14
23985704 AAGGAAGATG
*
23985714 AATAAAAAATAAA-
1 AATAATAAATAAAT
23985727 AATAA-AAATAAA-
1 AATAATAAATAAAT
23985739 AATAA-AAATAAA-
1 AATAATAAATAAAT
23985751 AATAA-AAATAAAT
1 AATAATAAATAAAT
23985764 AATAAT-AATAAAT
1 AATAATAAATAAAT
23985777 -A-AATAAACTAAAT
1 AATAATAAA-TAAAT
23985790 AA
1 AA
23985792 CTATTTTAAC
Statistics
Matches: 60, Mismatches: 0, Indels: 9
0.87 0.00 0.13
Matches are distributed among these distances:
11 3 0.05
12 34 0.57
13 22 0.37
14 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.00, T:0.21
Consensus pattern (14 bp):
AATAATAAATAAAT
Found at i:23985791 original size:17 final size:17
Alignment explanation
Indices: 23985721--23985782 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 17
23985711 ATGAATAAAA
23985721 AATAA-AAATAAA-AAT
1 AATAATAAATAAATAAT
* *
23985736 AAAAAT-AA-AAATAAA
1 AATAATAAATAAATAAT
23985751 AATAA-AAATAAATAAT
1 AATAATAAATAAATAAT
23985767 AATAATAAATAAATAA
1 AATAATAAATAAATAA
23985783 ACTAAATAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
14 3 0.08
15 14 0.37
16 11 0.29
17 10 0.26
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AATAATAAATAAATAAT
Found at i:23992832 original size:29 final size:30
Alignment explanation
Indices: 23992769--23992887 Score: 106
Period size: 29 Copynumber: 4.2 Consensus size: 30
23992759 TACATACATG
* * *
23992769 CATATGGCCCA-CTATGCTCAA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
23992797 CAAATGGCCCATCT-GGCCTAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
23992826 CATATGGCCTA-CTAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
23992855 CATAAGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
23992884 -ATAT
1 CATAT
23992888 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
28 18 0.25
29 53 0.75
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:23995703 original size:20 final size:20
Alignment explanation
Indices: 23995678--23995720 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
23995668 CACCCATGTG
* *
23995678 GAAGAAGCATAGGCCCGTGT
1 GAAGAAACACAGGCCCGTGT
23995698 GAAGAAACACAGGCCCGTGT
1 GAAGAAACACAGGCCCGTGT
23995718 GAA
1 GAA
23995721 CAACCCGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.33, T:0.12
Consensus pattern (20 bp):
GAAGAAACACAGGCCCGTGT
Found at i:23997791 original size:93 final size:93
Alignment explanation
Indices: 23997632--23997801 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
23997622 TGCCCATAAG
*** *
23997632 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23997697 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
23997725 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23997790 ACGAGTTCGGAT
66 ACGAGTTCGGAT
23997802 ACCCAAATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23997800 original size:46 final size:46
Alignment explanation
Indices: 23997625--23997800 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
23997615 TGTAACCTGC
* *** *
23997625 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
23997671 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
23997721 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
23997764 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
23997801 TACCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:23997819 original size:46 final size:47
Alignment explanation
Indices: 23997676--23997819 Score: 131
Period size: 46 Copynumber: 3.1 Consensus size: 47
23997666 CGCATCCATG
* * * *
23997676 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCCAATTATC--CTA
* *
23997724 A-CGAACTCGGACTCAACTCAACGAGTTCGG--A--CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCCAATT--ATCC-TA
*
23997769 AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCCAATTATCCTA
23997815 AGTGA
1 AGTGA
23997820 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 3 0.04
46 34 0.43
47 29 0.37
48 6 0.08
50 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCCAATTATCCTA
Found at i:24001617 original size:42 final size:41
Alignment explanation
Indices: 24001463--24001618 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 41
24001453 TATGTTATCG
*
24001463 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTCA
* * * *
24001505 TGTATAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTCA
24001549 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-CA
24001591 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
24001619 TGTCCGATTT
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
41 3 0.03
42 53 0.56
43 8 0.09
44 28 0.30
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTCA
Found at i:24008941 original size:42 final size:41
Alignment explanation
Indices: 24008787--24008942 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 41
24008777 TATGTTATCG
*
24008787 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTCA
* * * *
24008829 TGTATAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTCA
24008873 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-CA
24008915 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
24008943 TGTCCGATTT
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
41 3 0.03
42 53 0.56
43 8 0.09
44 28 0.30
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTCA
Found at i:24012460 original size:40 final size:39
Alignment explanation
Indices: 24012305--24012527 Score: 223
Period size: 40 Copynumber: 5.6 Consensus size: 39
24012295 TCCTCGTTCA
* * * * *
24012305 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
24012344 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
24012383 GACTACCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
24012423 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
24012463 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
24012504 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24012528 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 37 0.24
40 111 0.71
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:24020392 original size:40 final size:40
Alignment explanation
Indices: 24020216--24020438 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
24020206 TCCTCGTTCA
* * * * *
24020216 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
24020255 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
24020295 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
24020335 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
24020375 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
24020415 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24020439 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:24032242 original size:42 final size:42
Alignment explanation
Indices: 24032173--24032328 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 42
24032163 GTACGTGTTA
* * * * *
24032173 TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGATT
1 TCATGTAAGACCACATCTGGGACATGGCATCGAAATGAGATT
* * *
24032215 TCGTGTAAGACCACATTTGGGGCATGGCATCGAAATGAGATT
1 TCATGTAAGACCACATCTGGGACATGGCATCGAAATGAGATT
* * * ** *
24032257 TCATATAAGACCATATCTGGGATATGGCATCGATGTGAGATC
1 TCATGTAAGACCACATCTGGGACATGGCATCGAAATGAGATT
* * *
24032299 CCATGTAAGACCACGTCTGGAACATGGCAT
1 TCATGTAAGACCACATCTGGGACATGGCAT
24032329 TGGCATCTTA
Statistics
Matches: 91, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
TCATGTAAGACCACATCTGGGACATGGCATCGAAATGAGATT
Found at i:24032325 original size:84 final size:84
Alignment explanation
Indices: 24032173--24032328 Score: 213
Period size: 84 Copynumber: 1.9 Consensus size: 84
24032163 GTACGTGTTA
* * * ** * * **
24032173 TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGATTTCGTGTAAGACCACATTTGGGGC
1 TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCCCATGTAAGACCACATCTGGAAC
24032238 ATGGCATCGAAATGAGATT
66 ATGGCATCGAAATGAGATT
* *
24032257 TCATATAAGACCATATCTGGGATATGGCATCGATGTGAGATCCCATGTAAGACCACGTCTGGAAC
1 TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCCCATGTAAGACCACATCTGGAAC
24032322 ATGGCAT
66 ATGGCAT
24032329 TGGCATCTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
84 61 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (84 bp):
TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCCCATGTAAGACCACATCTGGAAC
ATGGCATCGAAATGAGATT
Found at i:24038510 original size:42 final size:40
Alignment explanation
Indices: 24038458--24038575 Score: 130
Period size: 42 Copynumber: 2.9 Consensus size: 40
24038448 GGACTACCGA
*
24038458 GATTCCGTATAAGACCATATCTGGGATATGGCATCAGTATAT
1 GATTTCGTATAAGACCATATCTGGGATATGGCATC-G-ATAT
* *
24038500 GATTTCGTATAAGACCATGT-TAGGGACATGGCATCGATAT
1 GATTTCGTATAAGACCATATCT-GGGATATGGCATCGATAT
* * *
24038540 GATATTTCATGTAAGACCATATCCGGGATATGGCAT
1 G--ATTTCGTATAAGACCATATCTGGGATATGGCAT
24038576 TGACACGGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
40 5 0.08
41 2 0.03
42 57 0.89
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (40 bp):
GATTTCGTATAAGACCATATCTGGGATATGGCATCGATAT
Found at i:24046838 original size:35 final size:35
Alignment explanation
Indices: 24046780--24046943 Score: 177
Period size: 35 Copynumber: 4.7 Consensus size: 35
24046770 CGAATACTCA
*
24046780 AAGTTCATTATATCATCACATATGACCAAATATAC
1 AAGTTCAATATATCATCACATATGACCAAATATAC
* * * *
24046815 AAGTACAATATATCATCATATATGACCGATTATAC
1 AAGTTCAATATATCATCACATATGACCAAATATAC
* * * * * *
24046850 AAGCTCAATATAACATCACATGT-AGTCATATATTC
1 AAGTTCAATATATCATCACATATGA-CCAAATATAC
* * * *
24046885 AAGTTTAATATAACATCACATGTGGCCAAATATAC
1 AAGTTCAATATATCATCACATATGACCAAATATAC
24046920 AAGTTCAATATATCATCACATATG
1 AAGTTCAATATATCATCACATATG
24046944 TACATACCTA
Statistics
Matches: 103, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
34 1 0.01
35 102 0.99
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (35 bp):
AAGTTCAATATATCATCACATATGACCAAATATAC
Found at i:24047178 original size:37 final size:38
Alignment explanation
Indices: 24047120--24047192 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 38
24047110 CCTGACACCC
* *
24047120 TAAACTAACCCAATAATCCG-TTACACCCATGACCCAGT
1 TAAACTAACCCAAAAACCCGTTTACACCCA-GACCCAGT
*
24047158 TAAACT-ACCCAAAAACCCGTTTATACCCAGACCCA
1 TAAACTAACCCAAAAACCCGTTTACACCCAGACCCA
24047193 AAAAACGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.38, C:0.36, G:0.07, T:0.19
Consensus pattern (38 bp):
TAAACTAACCCAAAAACCCGTTTACACCCAGACCCAGT
Found at i:24047351 original size:13 final size:13
Alignment explanation
Indices: 24047333--24047358 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24047323 GCCATCAGCA
24047333 CCGTGATTCCAGG
1 CCGTGATTCCAGG
24047346 CCGTGATTCCAGG
1 CCGTGATTCCAGG
24047359 TTTCGAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (13 bp):
CCGTGATTCCAGG
Found at i:24048406 original size:42 final size:41
Alignment explanation
Indices: 24048327--24048421 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 41
24048317 ATATATTATT
*
24048327 TTATATATATTATAAGTATTATTTTAAAACTTGTATAC-TA
1 TTATATATATTATAAGTATTATTTTAAAACTTATATACGTA
* * **
24048367 TTATCATATATTATTAGGTATTATTTTACATTTTATATACGTA
1 TTAT-ATATATTA-TAAGTATTATTTTAAAACTTATATACGTA
*
24048410 TTGTATGATATT
1 TTATAT-ATATT
24048422 TCAAAATATT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
40 4 0.09
41 8 0.18
42 23 0.51
43 10 0.22
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (41 bp):
TTATATATATTATAAGTATTATTTTAAAACTTATATACGTA
Found at i:24051811 original size:35 final size:35
Alignment explanation
Indices: 24051772--24051846 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
24051762 GCAAGAGTAG
24051772 GAGGATCTTCAGATCAGTTGTAGAAAGAGGTCCAA
1 GAGGATCTTCAGATCAGTTGTAGAAAGAGGTCCAA
24051807 GAGGATCTTCAGATCAGTTGTAGAAAGAGGTCCAA
1 GAGGATCTTCAGATCAGTTGTAGAAAGAGGTCCAA
24051842 GAGGA
1 GAGGA
24051847 AAAGGCTAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (35 bp):
GAGGATCTTCAGATCAGTTGTAGAAAGAGGTCCAA
Found at i:24052362 original size:14 final size:14
Alignment explanation
Indices: 24052343--24052372 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24052333 AAGATATTCT
24052343 TTTTCTAAATAAAG
1 TTTTCTAAATAAAG
*
24052357 TTTTCTAAATGAAG
1 TTTTCTAAATAAAG
24052371 TT
1 TT
24052373 GAACCAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAG
Found at i:24052429 original size:15 final size:15
Alignment explanation
Indices: 24052393--24052442 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
24052383 CGATATCCTT
24052393 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
24052407 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
24052423 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
24052436 TTTGCAT
1 TTTGCAT
24052443 TTAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:24060911 original size:205 final size:205
Alignment explanation
Indices: 24060419--24061197 Score: 1150
Period size: 205 Copynumber: 3.8 Consensus size: 205
24060409 TTGGCCGCAG
* * * * *
24060419 CATAGCAGATCTCACCTTCAGATATTTATGCTGAAGCAGATCC-AGAATGGTTTGGTATCCTTGT
1 CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAG-ATGATTTAGCATCCTTGT
* * * *
24060483 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGCTGAAGCAAATC
65 GCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATC
* * * *
24060548 TAAGATGATTTGGCATCTCTGTATTGTCAGAAAACAAATCGAA-TCTGGCATCTCCCTTTCAACA
130 TAAGATGATTTGACATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCCCTTCAACA
24060612 GGGAACAGATA
195 GGGAACAGATA
*
24060623 CATAGCAGATCTCACCTTCAGATGTTTATACTGAGGCAGATCCAAGATGATTTAGCATCCTTGTG
1 CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTAGCATCCTTGTG
* *
24060688 CTTACAAGGAGAAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
66 CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATCT
* *
24060753 AAGATGATTTGACATCTCTGTATTGTAAGAGAGCAAATCGAAGTCTGGCATCTCCCCTTCAACGG
131 AAGATGATTTGACATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCCCTTCAACAG
24060818 GGAACAGATA
196 GGAACAGATA
* * * *
24060828 CATAGTAGATCTCACATTCAGATGTTTATACTGAGGCAGATCCGAA-ATGATTTAGCATCCTTCT
1 CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCC-AAGATGATTTAGCATCCTTGT
* * *
24060892 GCTTACAATGAGCAAATCGAAGACGTAGCTGATTTGGCTTTCACGTGTTTACGATAAACCAAATC
65 GCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATC
* *
24060957 TAAGATGATTTCACATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAACA
130 TAAGATGATTTGACATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCCCTTCAACA
**
24061022 GGGAGTAGATA
195 GGGAACAGATA
* * * * *
24061033 CGTAGCAGATTTCACCTTCAGATGTTTATACTGAATCAGATCCAAGATGATTTAGTATCTTTGTG
1 CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTAGCATCCTTGTG
* * *
24061098 CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACATGTTTATGTTAAAGCAAATCT
66 CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATCT
* * * *
24061163 AAGATGATTTGGCATCTTTGTATTGGCGGAGAGCA
131 AAGATGATTTGACATCTCTGTATTGTCAGAGAGCA
24061198 GATCAAAGAT
Statistics
Matches: 521, Mismatches: 50, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
204 157 0.30
205 362 0.69
206 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (205 bp):
CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTAGCATCCTTGTG
CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATCT
AAGATGATTTGACATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCCCTTCAACAG
GGAACAGATA
Found at i:24063197 original size:42 final size:41
Alignment explanation
Indices: 24063118--24063212 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 41
24063108 ATATATTATT
*
24063118 TTATATATATTATTAGTATTATTTTAAAACTTGTATAC-TA
1 TTATATATATTATTAGTATTATTTTAAAACTTATATACGTA
* **
24063158 TTATCATATATTATTAGGTATTATTTTACATTTTATATACGTA
1 TTAT-ATATATTATTA-GTATTATTTTAAAACTTATATACGTA
*
24063201 TTGTATGATATT
1 TTATAT-ATATT
24063213 TCAAAATATT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
40 4 0.09
41 11 0.24
42 21 0.46
43 10 0.22
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (41 bp):
TTATATATATTATTAGTATTATTTTAAAACTTATATACGTA
Found at i:24066822 original size:28 final size:28
Alignment explanation
Indices: 24066770--24066824 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
24066760 TAGAGTGCCC
*
24066770 CTATGTATACAAAATTACCATTATACCA
1 CTATGTATACAAAATGACCATTATACCA
*
24066798 CTATGTATGCAAAATGACC-TCTATACC
1 CTATGTATACAAAATGACCAT-TATACC
24066825 CCTAGGGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 23 0.96
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (28 bp):
CTATGTATACAAAATGACCATTATACCA
Found at i:24066988 original size:27 final size:28
Alignment explanation
Indices: 24066954--24067023 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
24066944 TGCCATAAAT
* **
24066954 TATCTGTTCTGGTGGCCCTACCAC-GTA
1 TATCTGTTCTGGTGGCACTACCACAAAA
*
24066981 TATCTGTTCTGGTGGCACTGCCACAAAA
1 TATCTGTTCTGGTGGCACTACCACAAAA
24067009 TATCTGTATCTGGTG
1 TATCTGT-TCTGGTG
24067024 ACTCTATCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 22 0.59
28 8 0.22
29 7 0.19
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (28 bp):
TATCTGTTCTGGTGGCACTACCACAAAA
Found at i:24067034 original size:29 final size:28
Alignment explanation
Indices: 24066954--24067034 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 28
24066944 TGCCATAAAT
* * **
24066954 TATCTGTTCTGGTGGCCCTACCAC-GTA
1 TATCTGTTCTGGTGACACTACCACAAAA
* *
24066981 TATCTGTTCTGGTGGCACTGCCACAAAA
1 TATCTGTTCTGGTGACACTACCACAAAA
* *
24067009 TATCTGTATCTGGTGACTCTATCACA
1 TATCTGT-TCTGGTGACACTACCACA
24067035 TTTTCTGTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 22 0.50
28 8 0.18
29 14 0.32
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (28 bp):
TATCTGTTCTGGTGACACTACCACAAAA
Found at i:24067042 original size:55 final size:56
Alignment explanation
Indices: 24066934--24067048 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
24066924 AGGAAGCGTC
* * * *
24066934 CTGGTGGCTATGCCATAAATTATCTGTTCTGGTGGCCCTACCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
* * *
24066989 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTATCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTACCACATATATCTGTAT
24067045 CTGG
1 CTGG
24067049 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
Found at i:24068141 original size:11 final size:10
Alignment explanation
Indices: 24068113--24068146 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
24068103 AGCCTGTAAG
24068113 TATTCTGAAT
1 TATTCTGAAT
*
24068123 TTTTCTGAAT
1 TATTCTGAAT
24068133 ATATTCTGAAT
1 -TATTCTGAAT
24068144 TAT
1 TAT
24068147 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:24079180 original size:40 final size:40
Alignment explanation
Indices: 24079125--24079202 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
24079115 ACACACCTTG
* *
24079125 TGGGGATAAAATCGACCCACCCATCCCTGCAAACCATATA
1 TGGGGATAAAATCGACCCACCCAACCCTACAAACCATATA
* *
24079165 TGGGGATAAAATCGACCCATCCAACCCTACACACCATA
1 TGGGGATAAAATCGACCCACCCAACCCTACAAACCATA
24079203 AAGTACTGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.36, C:0.33, G:0.14, T:0.17
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAACCCTACAAACCATATA
Found at i:24081441 original size:26 final size:26
Alignment explanation
Indices: 24081412--24081519 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
24081402 TGGTATAAAT
24081412 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24081438 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24081464 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24081490 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24081516 TGAT
1 TGAT
24081520 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24083035 original size:26 final size:26
Alignment explanation
Indices: 24083005--24083057 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24082995 TTTTCAGTTT
*
24083005 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
24083031 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
24083057 T
1 T
24083058 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:24086188 original size:40 final size:39
Alignment explanation
Indices: 24086001--24086196 Score: 207
Period size: 39 Copynumber: 5.0 Consensus size: 39
24085991 ATAATGGAGA
* * * *
24086001 ATTATATCCGGGCT-AAGTCCTGAAGGCATTCGTGCTAGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
* * * * * *
24086040 GTTATATCCGGG-TTAAGCCCCGAATGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
* * *
24086079 GTTATATTCGGGCTAAAGTCCTGCAGGCTTTGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
24086118 ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
* * *
24086157 ATTATATCTGGGCTTAAAGTCCCGCATGCTTTGTGTTGGT
1 ATTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGT
24086197 GATTGGATTT
Statistics
Matches: 136, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 101 0.74
40 34 0.25
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (39 bp):
ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
Found at i:24090720 original size:13 final size:13
Alignment explanation
Indices: 24090702--24090727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24090692 CAGTTTGTTA
24090702 ACCCCAATAGACT
1 ACCCCAATAGACT
24090715 ACCCCAATAGACT
1 ACCCCAATAGACT
24090728 CACCACTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.08, T:0.15
Consensus pattern (13 bp):
ACCCCAATAGACT
Found at i:24093296 original size:40 final size:40
Alignment explanation
Indices: 24093238--24093315 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
24093228 ACACACCTTG
* ** * * *
24093238 TGGGGATAAAATTGACCCAACTATCCCTGCACACCATATA
1 TGGGAATAAAATCAACCCAACCAACCCTACACACCATATA
*
24093278 TGGGAATAAAATCAACCCATCCAACCCTACACACCATA
1 TGGGAATAAAATCAACCCAACCAACCCTACACACCATA
24093316 AGGTACTGCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.38, C:0.31, G:0.12, T:0.19
Consensus pattern (40 bp):
TGGGAATAAAATCAACCCAACCAACCCTACACACCATATA
Found at i:24099304 original size:21 final size:20
Alignment explanation
Indices: 24099280--24099318 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24099270 GCCGTGCACA
*
24099280 CTAGGCACGGTCGTATGATGG
1 CTAGGCA-GGCCGTATGATGG
*
24099301 CTAGGTAGGCCGTATGAT
1 CTAGGCAGGCCGTATGAT
24099319 CCACACGGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.21, C:0.18, G:0.36, T:0.26
Consensus pattern (20 bp):
CTAGGCAGGCCGTATGATGG
Done.