Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 87 of 349
Found at i:26050735 original size:46 final size:44
Alignment explanation
Indices: 26050624--26050795 Score: 132
Period size: 46 Copynumber: 3.7 Consensus size: 44
26050614 CATTTTGAGA
* ** *
26050624 GCCAGTGTAAAACCATGTCTGGGACATGGCATCAAC-ACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GAGA--CGT
* *
26050672 GCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCT-CGAGACGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGT
* * *
26050716 AAGCCAGTGTAAGACATGTCTAGGACGTGCATCGGCTACGAGATGT
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGT
** *
26050762 GTTAGTGTAAGACCATGTCTGGTACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
26050796 ACACATATAT
Statistics
Matches: 101, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.12
45 13 0.13
46 50 0.50
47 16 0.16
48 10 0.10
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGT
Found at i:26054603 original size:22 final size:21
Alignment explanation
Indices: 26054578--26054624 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
26054568 ATTTAGGTTA
* *
26054578 TATATGAATATTATATAATTAT
1 TATATAAATATTATAT-ATAAT
26054600 TATATAAATATTATATATAAT
1 TATATAAATATTATATATAAT
26054621 TATA
1 TATA
26054625 AACCATCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TATATAAATATTATATATAAT
Found at i:26054619 original size:13 final size:11
Alignment explanation
Indices: 26054578--26054616 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
26054568 ATTTAGGTTA
*
26054578 TATATGAATAT
1 TATATAAATAT
*
26054589 TATATAATTAT
1 TATATAAATAT
26054600 TATATAAATAT
1 TATATAAATAT
26054611 TATATA
1 TATATA
26054617 TAATTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (11 bp):
TATATAAATAT
Found at i:26056553 original size:23 final size:23
Alignment explanation
Indices: 26056527--26056614 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 23
26056517 GCTTTACTGA
* *
26056527 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
26056550 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
26056571 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* * *
26056593 T-AGGCACTTTATGTGTCATATT
1 TCAGGCACCTCATGTGTCGTATT
26056615 CTGATCAGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
21 34 0.62
22 3 0.05
23 18 0.33
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.39
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:26056574 original size:21 final size:21
Alignment explanation
Indices: 26056539--26056599 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 21
26056529 AGGCACTTTA
26056539 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
26056562 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* *
26056583 TGTGTCGTTTTAGGCAC
1 TGTGTCGTATCAGGCAC
26056600 TTTATGTGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 27 0.75
23 9 0.25
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:26059896 original size:17 final size:17
Alignment explanation
Indices: 26059874--26059907 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26059864 TTGATTATCG
26059874 ACAGTTAAATAAAGTGA
1 ACAGTTAAATAAAGTGA
*
26059891 ACAGTTGAATAAAGTGA
1 ACAGTTAAATAAAGTGA
26059908 CGATCAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.21, T:0.24
Consensus pattern (17 bp):
ACAGTTAAATAAAGTGA
Found at i:26062851 original size:3 final size:3
Alignment explanation
Indices: 26062843--26062883 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
26062833 TATGGTTTTA
* *
26062843 TAT TAT TAT TAT TAT TAT TAT TAG TAT TGT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26062884 AATGAAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:26064763 original size:23 final size:23
Alignment explanation
Indices: 26064737--26064808 Score: 80
Period size: 21 Copynumber: 3.3 Consensus size: 23
26064727 GCTTTACTGA
* *
26064737 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
26064760 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
26064781 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
26064803 T-AGGCA
1 TCAGGCA
26064809 TTTTATGTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
21 25 0.57
22 1 0.02
23 18 0.41
ACGTcount: A:0.15, C:0.24, G:0.26, T:0.35
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:26064784 original size:21 final size:22
Alignment explanation
Indices: 26064749--26064808 Score: 88
Period size: 21 Copynumber: 2.8 Consensus size: 22
26064739 AGGCACTTTA
26064749 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
26064772 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
*
26064793 TGTGTCGT-TTTAGGCA
1 TGTGTCGTATTCAGGCA
26064809 TTTTATGTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
21 26 0.74
23 9 0.26
ACGTcount: A:0.13, C:0.23, G:0.28, T:0.35
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:26079732 original size:67 final size:66
Alignment explanation
Indices: 26079620--26079789 Score: 166
Period size: 67 Copynumber: 2.5 Consensus size: 66
26079610 ATTCCATTGG
* * * *
26079620 GACAATAAACATGGGGTGTGTTGTATAAGACCATAGCCTATCTATGGCAGCATAA-AGAG-TC-C
1 GACAGTAAACA-GGGGTATGTTGTGTAAGACCATAGCCTAGCTATGGCAGCA-AAGAGAGTTCAC
26079682 GTCGA
64 -T-GA
* * * *
26079687 GACAGTAAATACGGGGTATGTTGTGTAAGACCATAGCTTGGCTATGGTAGCAAAGAGAGTTCACT
1 GACAGTAAACA-GGGGTATGTTGTGTAAGACCATAGCCTAGCTATGGCAGCAAAGAGAGTTCACT
*
26079752 GG
65 GA
* *
26079754 GATAGTAAACAGGAGGTATGTTGTGTAAGACTATAG
1 GACAGTAAACAGG-GGTATGTTGTGTAAGACCATAG
26079790 TCGACTATGA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
66 4 0.05
67 78 0.91
68 3 0.03
69 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (66 bp):
GACAGTAAACAGGGGTATGTTGTGTAAGACCATAGCCTAGCTATGGCAGCAAAGAGAGTTCACTG
A
Found at i:26088204 original size:19 final size:19
Alignment explanation
Indices: 26088164--26088204 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26088154 TAGCTGTATA
*
26088164 ATTATTATTTTAATAAATT
1 ATTATTATTTTAATAAAGT
26088183 ATTATTACTTTTAAT-AAGT
1 ATTATTA-TTTTAATAAAGT
26088202 ATT
1 ATT
26088205 GATAAGGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTATTATTTTAATAAAGT
Found at i:26089356 original size:20 final size:20
Alignment explanation
Indices: 26089331--26089379 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
26089321 ATGTTAGTCC
* *
26089331 CATGAATAGTGGGGTCAACT
1 CATGAATAGTGGAGTCAAAT
*
26089351 CATGAACAGTGGAGTCAAAT
1 CATGAATAGTGGAGTCAAAT
26089371 CATGAATAG
1 CATGAATAG
26089380 CTATAACATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (20 bp):
CATGAATAGTGGAGTCAAAT
Found at i:26097086 original size:70 final size:68
Alignment explanation
Indices: 26097012--26097368 Score: 244
Period size: 70 Copynumber: 5.1 Consensus size: 68
26097002 AGGCTCCCAA
* * *
26097012 GTTCAATTCCACAGCCTCCAAAAAAGTTAACAAATGCTCAAGCTGCCATCTATGATCTTAAGGCT
1 GTTCAATACCACAGCCTCCAAAAAAGTTAACAAA-GCCCAAGCT-CCAACTATGATCTTAAGGCT
26097077 CATAG
64 CATAG
* * * * * * * *
26097082 GTTCAATATCGCAGCATCTAAAACAA-TTAGCGAGAGCCCAAGCTCCCAACTGT-AGCTTTAAGG
1 GTTCAATACCACAGCCTCCAAAA-AAGTTAAC-AAAGCCCAAGCT-CCAACTATGATC-TTAAGG
26097145 CTTGCAT--
62 C-T-CATAG
** * * * *
26097152 GTTCAATACTGCAGCCTCCAAAATAGTTAACAAGAGCCCAAGCTCTTAGCTACGATCTTAAGGCT
1 GTTCAATACCACAGCCTCCAAAAAAGTTAACAA-AGCCCAAGCTC-CAACTATGATCTTAAGGCT
26097217 CATAG
64 CATAG
* * * * *
26097222 GTTCAATACCACAGCCTCCAAAATAGTTAGTAC-GATCCCAAGCTCCCAACTAT-AACTTTAAAG
1 GTTCAATACCACAGCCTCCAAAAAAGTTA--ACAAAGCCCAAGCT-CCAACTATGATC-TTAAGG
*
26097285 CTCACAG
62 CTCATAG
* * * * *
26097292 GTTCAATACTACAG-CTCCAAAACAA-TTAGCGAGAGCCTAAGCTCCCAACTATAATCTTAAGGC
1 GTTCAATACCACAGCCTCCAAAA-AAGTTAAC-AAAGCCCAAGCT-CCAACTATGATCTTAAGGC
*
26097355 TCACAG
63 TCATAG
26097361 GTTCAATA
1 GTTCAATA
26097369 TCATAGCTTC
Statistics
Matches: 227, Mismatches: 41, Indels: 39
0.74 0.13 0.13
Matches are distributed among these distances:
67 1 0.00
68 3 0.01
69 57 0.25
70 153 0.67
71 8 0.04
72 5 0.02
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (68 bp):
GTTCAATACCACAGCCTCCAAAAAAGTTAACAAAGCCCAAGCTCCAACTATGATCTTAAGGCTCA
TAG
Found at i:26097420 original size:139 final size:140
Alignment explanation
Indices: 26096980--26097436 Score: 472
Period size: 140 Copynumber: 3.3 Consensus size: 140
26096970 AGCGATAGAT
* * ** * * *
26096980 CAAGCTCCCAACTGTAGTTTTGAGGCTCCCAAGTTCAATTCCACAGCCTCCAAAA-AAGTTAACA
1 CAAGCTCCCAACTGTAGCTTTAAGGCTTACAGGTTCAATACTACAGCCTCCAAAACAA-TTAACA
* * * * * *
26097044 A-ATGCTCAAGCTGCCATCTATGATCTTAAGGCTCATAGGTTCAATATCGCAGCATCTAAAACAA
65 AGA-GCCCAAGCTCCCAACTATGATCTTAAGGCTCATAGGTTCAATATCACAGCATCTAAAATAG
*
26097108 TTAGCGAGAGCC
129 TTAGTGAGAGCC
* * * * *
26097120 CAAGCTCCCAACTGTAGCTTTAAGGCTTGCATGTTCAATACTGCAGCCTCCAAAATAGTTAACAA
1 CAAGCTCCCAACTGTAGCTTTAAGGCTTACAGGTTCAATACTACAGCCTCCAAAACAATTAACAA
** * * * * *
26097185 GAGCCCAAGCTCTTAGCTACGATCTTAAGGCTCATAGGTTCAATACCACAGCCTCCAAAATAGTT
66 GAGCCCAAGCTCCCAACTATGATCTTAAGGCTCATAGGTTCAATATCACAGCATCTAAAATAGTT
*
26097250 AGT-ACGATCC
131 AGTGA-GAGCC
* * * * * *
26097260 CAAGCTCCCAACTATAACTTTAAAGCTCACAGGTTCAATACTACAG-CTCCAAAACAATTAGCGA
1 CAAGCTCCCAACTGTAGCTTTAAGGCTTACAGGTTCAATACTACAGCCTCCAAAACAATTAACAA
* * * * *
26097324 GAGCCTAAGCTCCCAACTATAATCTTAAGGCTCACAGGTTCAATATCATAGCTTCTAAAATAGTT
66 GAGCCCAAGCTCCCAACTATGATCTTAAGGCTCATAGGTTCAATATCACAGCATCTAAAATAGTT
* *
26097389 AGTGTGAGCT
131 AGTGAGAGCC
* * *
26097399 GAAGCTCCCAACTGTTGCTTTAGGGCTTACAGGTTCAA
1 CAAGCTCCCAACTGTAGCTTTAAGGCTTACAGGTTCAA
26097437 CACCGCAACC
Statistics
Matches: 258, Mismatches: 55, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
139 106 0.41
140 150 0.58
141 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (140 bp):
CAAGCTCCCAACTGTAGCTTTAAGGCTTACAGGTTCAATACTACAGCCTCCAAAACAATTAACAA
GAGCCCAAGCTCCCAACTATGATCTTAAGGCTCATAGGTTCAATATCACAGCATCTAAAATAGTT
AGTGAGAGCC
Found at i:26100528 original size:23 final size:23
Alignment explanation
Indices: 26100502--26100560 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
26100492 CAAATCCTAA
26100502 GAGCTTACTGTTTCAGCGCATTG
1 GAGCTTACTGTTTCAGCGCATTG
* * *
26100525 GAGCTTACTGTTTCAGCTCGTTT
1 GAGCTTACTGTTTCAGCGCATTG
26100548 GAGCTTACTGTTT
1 GAGCTTACTGTTT
26100561 AGCTCGATAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCGCATTG
Found at i:26112713 original size:13 final size:13
Alignment explanation
Indices: 26112695--26112722 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26112685 ATAATCCTTA
26112695 ATTAATTCTAACC
1 ATTAATTCTAACC
26112708 ATTAATTCTAACC
1 ATTAATTCTAACC
26112721 AT
1 AT
26112723 CTCCTTTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTAATTCTAACC
Found at i:26122434 original size:62 final size:62
Alignment explanation
Indices: 26122337--26122461 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
26122327 AAATGTTGAT
26122337 TAGATGACTATGTTTCCTGGTGTTTCTATTCGACATCTACCACATTCTTTTTTAGATAATTG
1 TAGATGACTATGTTTCCTGGTGTTTCTATTCGACATCTACCACATTCTTTTTTAGATAATTG
* *
26122399 TAGATGATTATGTTTCCTGGTGTTTCTATTCGACATCTACCATATTCTTTTTTAGATAATTG
1 TAGATGACTATGTTTCCTGGTGTTTCTATTCGACATCTACCACATTCTTTTTTAGATAATTG
26122461 T
1 T
26122462 CTTTTCCTTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.47
Consensus pattern (62 bp):
TAGATGACTATGTTTCCTGGTGTTTCTATTCGACATCTACCACATTCTTTTTTAGATAATTG
Found at i:26127071 original size:7 final size:7
Alignment explanation
Indices: 26127059--26127083 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26127049 GACCAATCCT
26127059 TTTTAAA
1 TTTTAAA
26127066 TTTTAAA
1 TTTTAAA
26127073 TTTTAAA
1 TTTTAAA
26127080 TTTT
1 TTTT
26127084 TTATATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTAAA
Found at i:26127239 original size:14 final size:13
Alignment explanation
Indices: 26127211--26127237 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26127201 AAAAACATAG
26127211 ATTTATTTTAAAA
1 ATTTATTTTAAAA
26127224 ATTTATTTTAAAA
1 ATTTATTTTAAAA
26127237 A
1 A
26127238 ATAGGGACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTATTTTAAAA
Found at i:26133919 original size:48 final size:48
Alignment explanation
Indices: 26133847--26134121 Score: 406
Period size: 48 Copynumber: 5.7 Consensus size: 48
26133837 TAAAGTACCA
* *
26133847 ATGCCATGTCCCAGACATGGTCTTACACGGGCACACATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
* *
26133895 ATGCCATGTCCCAGACATGATCTTACACTGGCACACATATCATTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
* *
26133943 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
* ** * *
26133991 ATGTCATGTCTTAGACATGGTTTTACACTGGCACATATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
* *
26134039 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
* * *
26134087 ATTCCATGTCCCAAACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
26134122 TTTAGCACGG
Statistics
Matches: 201, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 201 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
Found at i:26140806 original size:144 final size:144
Alignment explanation
Indices: 26140545--26140870 Score: 422
Period size: 144 Copynumber: 2.3 Consensus size: 144
26140535 CAAATAAAGT
* * * * * * * *
26140545 ACCAATGCCATGTCCCCGACATGGTCTTACAT--GAATCTACATCTCATCGCCGATGCCATCTTC
1 ACCAATGCCATGTCCCAGAAATGATCTTACATAGGCA-CT-TATATCATCGCCAATGCCATCTCC
*
26140608 TAGACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAAACATGGTCTTACAC
64 CAGACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAAACATGGTCTTACAC
* *
26140673 CGGCTCACATATCATC
129 CAGCACACATATCATC
* * *
26140689 CCCAATGCCATGTCCCAGAAATGATCTTACATTGGCACTTATATCATCGCCAATGCCATGTCCCA
1 ACCAATGCCATGTCCCAGAAATGATCTTACATAGGCACTTATATCATCGCCAATGCCATCTCCCA
* ** *
26140754 GACATGGTCTTACACTGGCACATATATCATTGCCGATGCCATGTCCCAAACATGGTCTTACACTA
66 GACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAAACATGGTCTTACACCA
26140819 GCACACATATCATC
131 GCACACATATCATC
** * *
26140833 ACTGATGCCATGTCCCAGACATGGTCTTACATAGGCAC
1 ACCAATGCCATGTCCCAGAAATGATCTTACATAGGCAC
26140871 ATTTAGCATG
Statistics
Matches: 157, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
144 153 0.97
145 2 0.01
146 2 0.01
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (144 bp):
ACCAATGCCATGTCCCAGAAATGATCTTACATAGGCACTTATATCATCGCCAATGCCATCTCCCA
GACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAAACATGGTCTTACACCA
GCACACATATCATC
Found at i:26140871 original size:48 final size:47
Alignment explanation
Indices: 26140549--26140871 Score: 360
Period size: 48 Copynumber: 6.7 Consensus size: 47
26140539 TAAAGTACCA
* * *
26140549 ATGCCATGTCCCCGACATGGTCTTACAT-GAATCTACATCTCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATGGCA-C-ACATATCATCGCCG
* * * *
26140597 ATGCCATCTTCTAGACATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCATCGCCG
* * * * *
26140645 ATGCCATGTCCCAAACATGGTCTTACACCGGCTCACATATCATCCCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCATCGCCG
* * ** *
26140693 ATGCCATGTCCCAGAAATGATCTTACATTGGCACTTATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCATCGCCG
* *
26140741 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCATCGCCG
* * * *
26140789 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCATCGCCG
26140837 ATGCCATGTCCCAGACATGGTCTTACATAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGCACA
26140872 TTTAGCATGG
Statistics
Matches: 234, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
47 1 0.00
48 229 0.98
49 2 0.01
50 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGCACACATATCATCGCCG
Found at i:26142309 original size:29 final size:29
Alignment explanation
Indices: 26142263--26142345 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
26142253 TATGATATGC
* *
26142263 GAACCCTAGGAACATGCGAGCCTATGTGCA
1 GAACCCTAGAAACGTGCGAGCCTATGTG-A
* *
26142293 -AACCTTAGTAACGTGCGAGCCTATGTGA
1 GAACCCTAGAAACGTGCGAGCCTATGTGA
* *
26142321 GAACCCTAGAAACTTGCAAGCCTAT
1 GAACCCTAGAAACGTGCGAGCCTAT
26142346 ATACAATCCC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
28 1 0.02
29 44 0.98
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.20
Consensus pattern (29 bp):
GAACCCTAGAAACGTGCGAGCCTATGTGA
Found at i:26150458 original size:25 final size:24
Alignment explanation
Indices: 26150429--26150477 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
26150419 AGCTAAAGTC
26150429 GGTTTTGGCTGAAGCACTTATATTG
1 GGTTTTGGCTGAAGCACTTA-ATTG
26150454 GGTTTTGGCTGAAGCACTTAATTG
1 GGTTTTGGCTGAAGCACTTAATTG
26150478 ACACAGCCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.20, C:0.12, G:0.29, T:0.39
Consensus pattern (24 bp):
GGTTTTGGCTGAAGCACTTAATTG
Found at i:26152978 original size:40 final size:40
Alignment explanation
Indices: 26152934--26153121 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
26152924 GCTACTTGCT
* * *
26152934 CAAATGCCTTCGGGGCTCAACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
26152974 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
26153014 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
26153054 CAATTGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
26153093 CAAATGCCTTCGGGACTTAGCCCAGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
26153122 CATCCGAATA
Statistics
Matches: 130, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 31 0.24
40 97 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26153107 original size:79 final size:80
Alignment explanation
Indices: 26152901--26153115 Score: 258
Period size: 80 Copynumber: 2.7 Consensus size: 80
26152891 AAACCAAGTA
* * * * * * * *
26152901 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGGCTCAACCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
26152964 GTAACTCGCACAAATG
65 ATAACTCGCACAAATG
* *
26152980 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* *
26153045 TAACTCTCACAATTG
66 TAACTCGCACAAATG
*
26153060 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
26153116 AGTTATCATC
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 56 0.47
80 61 0.52
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TAACTCGCACAAATG
Found at i:26156877 original size:35 final size:35
Alignment explanation
Indices: 26156831--26156912 Score: 137
Period size: 35 Copynumber: 2.3 Consensus size: 35
26156821 GAATTACCAG
26156831 TCCAGGCTAAATTTAGACCCTAATCAGATTAACTA
1 TCCAGGCTAAATTTAGACCCTAATCAGATTAACTA
* * *
26156866 TCCAGGCTAAATTTAGACCCTAATCGGATTACCTG
1 TCCAGGCTAAATTTAGACCCTAATCAGATTAACTA
26156901 TCCAGGCTAAAT
1 TCCAGGCTAAAT
26156913 CCTCAACGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (35 bp):
TCCAGGCTAAATTTAGACCCTAATCAGATTAACTA
Found at i:26160961 original size:42 final size:42
Alignment explanation
Indices: 26160899--26160991 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
26160889 GGATTAGGAT
* *
26160899 CACACGGGCAGGTGATATCGGCATGTGTCAAGCTGTATGGGA
1 CACACGGGCAGGTGACATCGGCATGTGTCAAGCTGTATGGAA
26160941 CACACGGGCAGGTGACATCGGCATGTGTCAAGCTGTATGGAA
1 CACACGGGCAGGTGACATCGGCATGTGTCAAGCTGTATGGAA
26160983 CACACGGGC
1 CACACGGGC
26160992 GTGTGCTAGA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.25, C:0.23, G:0.34, T:0.18
Consensus pattern (42 bp):
CACACGGGCAGGTGACATCGGCATGTGTCAAGCTGTATGGAA
Found at i:26169969 original size:57 final size:57
Alignment explanation
Indices: 26169900--26170014 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
26169890 CTTATGGCTC
26169900 TTTCATTCCACAAGTTTGATGTAATTTTGGGCATAGATTGGTTATCCAAATATGAGT
1 TTTCATTCCACAAGTTTGATGTAATTTTGGGCATAGATTGGTTATCCAAATATGAGT
26169957 TTTCATTCCACAAGTTTGATGTAATTTTGGGCATAGATTGGTTATCCAAATATGAGT
1 TTTCATTCCACAAGTTTGATGTAATTTTGGGCATAGATTGGTTATCCAAATATGAGT
26170014 T
1 T
26170015 ATAGTGGATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (57 bp):
TTTCATTCCACAAGTTTGATGTAATTTTGGGCATAGATTGGTTATCCAAATATGAGT
Found at i:26172496 original size:15 final size:15
Alignment explanation
Indices: 26172476--26172510 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
26172466 ATGGGGGAAA
26172476 TGTAGAACTTTGGTG
1 TGTAGAACTTTGGTG
26172491 TGTAGAACTTTGGTG
1 TGTAGAACTTTGGTG
26172506 TGTAG
1 TGTAG
26172511 GATAGAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.20, C:0.06, G:0.34, T:0.40
Consensus pattern (15 bp):
TGTAGAACTTTGGTG
Found at i:26174612 original size:28 final size:27
Alignment explanation
Indices: 26174545--26174605 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
26174535 AAATTAGCTC
* *
26174545 GCTTATCGTATTATGTTGCACTTTGTT
1 GCTTATCGTATTATGTTACACTTTGGT
* *
26174572 GCTTATCAATATTATTTTACACTTTGGT
1 GCTTATC-GTATTATGTTACACTTTGGT
26174600 GCTTAT
1 GCTTAT
26174606 TGTTATTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 7 0.24
28 22 0.76
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.51
Consensus pattern (27 bp):
GCTTATCGTATTATGTTACACTTTGGT
Found at i:26183418 original size:24 final size:24
Alignment explanation
Indices: 26183384--26183476 Score: 114
Period size: 24 Copynumber: 3.9 Consensus size: 24
26183374 GGACCATAGT
* *
26183384 CGAATGTGGCTCAAAATTATCTGC
1 CGAATGTGGCCCAGAATTATCTGC
* * * **
26183408 CAAATGTGGCTCAGAATTATATAT
1 CGAATGTGGCCCAGAATTATCTGC
*
26183432 CGAATGTGGCCCAGAATTATCAGC
1 CGAATGTGGCCCAGAATTATCTGC
26183456 CGAATGTGGCCCAGAATTATC
1 CGAATGTGGCCCAGAATTATC
26183477 AAAATTCACT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (24 bp):
CGAATGTGGCCCAGAATTATCTGC
Found at i:26183462 original size:48 final size:48
Alignment explanation
Indices: 26183383--26183475 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
26183373 AGGACCATAG
* * *
26183383 TCGAATGTGGCTCAAAATTATCTGCCAAATGTGGCTCAGAATTATATA
1 TCGAATGTGGCCCAAAATTATCAGCCAAATGTGGCCCAGAATTATATA
* *
26183431 TCGAATGTGGCCCAGAATTATCAGCCGAATGTGGCCCAGAATTAT
1 TCGAATGTGGCCCAAAATTATCAGCCAAATGTGGCCCAGAATTAT
26183476 CAAAATTCAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (48 bp):
TCGAATGTGGCCCAAAATTATCAGCCAAATGTGGCCCAGAATTATATA
Found at i:26187106 original size:21 final size:20
Alignment explanation
Indices: 26187082--26187120 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26187072 TGAATTGATT
26187082 AAATGTGTGATTAAATTAGTG
1 AAATGTGT-ATTAAATTAGTG
* *
26187103 AAATTTGTATTAATTTAG
1 AAATGTGTATTAAATTAG
26187121 ATCAAGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (20 bp):
AAATGTGTATTAAATTAGTG
Found at i:26187533 original size:41 final size:43
Alignment explanation
Indices: 26187424--26187576 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 43
26187414 TTCCGATGTG
*
26187424 TGATTCATGTAAGACCATGTCTAGGACATTGGCATCGAAGTGA
1 TGATTCATGTAAGACCATGTCTGGGACATTGGCATCGAAGTGA
** * *
26187467 -GAAAACATGTAAGACCATGTTTGGGACATTGGCATCGTA-T-A
1 TG-ATTCATGTAAGACCATGTCTGGGACATTGGCATCGAAGTGA
* * * *
26187508 TGATTCGTGTAAGACCCTGTCTGGGACAATGGCATTGATA-TG-
1 TGATTCATGTAAGACCATGTCTGGGACATTGGCATCGA-AGTGA
* * *
26187550 TGATCGCATGTAAGACTATATCTGGGA
1 TGAT-TCATGTAAGACCATGTCTGGGA
26187577 TATGGCAATG
Statistics
Matches: 87, Mismatches: 18, Indels: 10
0.76 0.16 0.09
Matches are distributed among these distances:
41 29 0.33
42 9 0.10
43 49 0.56
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (43 bp):
TGATTCATGTAAGACCATGTCTGGGACATTGGCATCGAAGTGA
Found at i:26190492 original size:49 final size:48
Alignment explanation
Indices: 26190433--26190649 Score: 196
Period size: 49 Copynumber: 4.6 Consensus size: 48
26190423 CATCAAAGTC
26190433 GATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGTT
1 GATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATC-AGGTT
* ** * * *
26190482 GATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAG-GTT
* * * * * *
26190531 GATGTCATGTCCCAGACAGGTCTTATACTAAC--ACACA-AT-AAGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAGGTT
* * *
26190575 GACGCCATGTCCCAGACAGGTCTTACACTAGCTTGT-ATATCTCGAGGCTT
1 GATGCCATGTCCCAGACAGGTCTTACACTAACTT-TCATATATC-AGG-TT
*
26190625 -ATG-CATGTCCCAGACATGTCTTACA
1 GATGCCATGTCCCAGACAGGTCTTACA
26190650 ATGGCTCTCA
Statistics
Matches: 132, Mismatches: 28, Indels: 17
0.75 0.16 0.10
Matches are distributed among these distances:
44 29 0.22
45 1 0.01
46 4 0.03
47 3 0.02
48 23 0.17
49 71 0.54
50 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAGGTT
Found at i:26190553 original size:98 final size:97
Alignment explanation
Indices: 26190385--26190562 Score: 277
Period size: 98 Copynumber: 1.8 Consensus size: 97
26190375 ATAAGATGTC
*
26190385 GATGCCATGTCCTAGACATGGTCTTACATTGGCTATCACATCAAAGTCGATGCCATGTCCCAGAC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTATCACATCAAAGTCGATGCCATGTCCCAGAC
26190450 AGGTCTTACACTAACTTTCATATATCGAGGTT
66 AGGTCTTACACTAACTTTCATATATCGAGGTT
* ** *
26190482 GATGCCATGTCCTAGACA-GGTCTTACACTGGCTCTCATCTATCAGTGTCGATGTCATGTCCCAG
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTATCA-C-ATCAAAGTCGATGCCATGTCCCAG
*
26190546 ACAGGTCTTATACTAAC
64 ACAGGTCTTACACTAAC
26190563 ACACAATAAG
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
96 17 0.23
97 19 0.26
98 37 0.51
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (97 bp):
GATGCCATGTCCTAGACATGGTCTTACACTGGCTATCACATCAAAGTCGATGCCATGTCCCAGAC
AGGTCTTACACTAACTTTCATATATCGAGGTT
Found at i:26199471 original size:18 final size:18
Alignment explanation
Indices: 26199437--26199471 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26199427 TTTTCAGAAA
*
26199437 TATGGGCCAACATGCCCG
1 TATGGGCCAACACGCCCG
*
26199455 TATGGGCCCACACGCCC
1 TATGGGCCAACACGCCC
26199472 AGATTGGCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.26, T:0.14
Consensus pattern (18 bp):
TATGGGCCAACACGCCCG
Found at i:26200859 original size:17 final size:17
Alignment explanation
Indices: 26200837--26200871 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26200827 TAGGTGGTGT
26200837 TAGAAGCATAGAATGCA
1 TAGAAGCATAGAATGCA
26200854 TAGAAGCATAGAATGCA
1 TAGAAGCATAGAATGCA
26200871 T
1 T
26200872 GAAAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.20
Consensus pattern (17 bp):
TAGAAGCATAGAATGCA
Found at i:26200862 original size:8 final size:9
Alignment explanation
Indices: 26200837--26200871 Score: 56
Period size: 8 Copynumber: 4.1 Consensus size: 9
26200827 TAGGTGGTGT
26200837 TAGAA-GCA
1 TAGAATGCA
26200845 TAGAATGCA
1 TAGAATGCA
26200854 TAGAA-GCA
1 TAGAATGCA
26200862 TAGAATGCA
1 TAGAATGCA
26200871 T
1 T
26200872 GAAAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 13 0.52
9 12 0.48
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.20
Consensus pattern (9 bp):
TAGAATGCA
Found at i:26201765 original size:13 final size:13
Alignment explanation
Indices: 26201747--26201780 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
26201737 ATATAATTAT
26201747 TAATAATATTTAA
1 TAATAATATTTAA
26201760 TAATAAT-TTTAA
1 TAATAATATTTAA
26201772 T-ATAATATT
1 TAATAATATT
26201781 ATTATTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.25
12 8 0.40
13 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAATATTTAA
Found at i:26206435 original size:27 final size:27
Alignment explanation
Indices: 26206397--26206455 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
26206387 GTTTAGTAAT
26206397 TATGTAACATATGTTTACACTTCACAG
1 TATGTAACATATGTTTACACTTCACAG
26206424 TATGTAACATATGTTTACACTTCACAG
1 TATGTAACATATGTTTACACTTCACAG
26206451 TATGT
1 TATGT
26206456 TTCTTTGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (27 bp):
TATGTAACATATGTTTACACTTCACAG
Found at i:26213851 original size:23 final size:23
Alignment explanation
Indices: 26213811--26213922 Score: 84
Period size: 23 Copynumber: 4.8 Consensus size: 23
26213801 AGGTCTTCCC
*
26213811 GAGCTGATGAACATTAAGCTCTATT
1 GAGCTGA--AACAGTAAGCTCTATT
*
26213836 GAGCTGAAACAGTAAGCTCTATA
1 GAGCTGAAACAGTAAGCTCTATT
* *
26213859 GAGTTG-AACAGTAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTAT-T
** * *
26213881 GAGCTGAAATGGTAAGCTCCAAT
1 GAGCTGAAACAGTAAGCTCTATT
* *
26213904 GAGCTAAAAATAGTAAGCT
1 GAGCT-GAAACAGTAAGCT
26213923 TTTACGAGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.03
22 17 0.24
23 34 0.47
24 12 0.17
25 7 0.10
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTATT
Found at i:26213871 original size:22 final size:22
Alignment explanation
Indices: 26213818--26213888 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
26213808 CCCGAGCTGA
* *
26213818 TGAACATTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATAGAGC
*
26213840 TGAAACAGTAAGCTCTATAGAGT
1 TG-AACAGTAAGCTCTATAGAGC
26213863 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTATA-GAGC
26213885 TGAA
1 TGAA
26213889 ATGGTAAGCT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.07
22 21 0.49
23 19 0.44
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATAGAGC
Found at i:26215151 original size:59 final size:59
Alignment explanation
Indices: 26215065--26215185 Score: 215
Period size: 59 Copynumber: 2.1 Consensus size: 59
26215055 TCAAATAGTA
* * *
26215065 AAATTTCTTTACGAAACTTTCATATAATAATTCTATCATGCTGTAAACCTTCTTAAAAT
1 AAATTTCTTTACAAAAATTTCACATAATAATTCTATCATGCTGTAAACCTTCTTAAAAT
26215124 AAATTTCTTTACAAAAATTTCACATAATAATTCTATCATGCTGTAAACCTTCTTAAAAT
1 AAATTTCTTTACAAAAATTTCACATAATAATTCTATCATGCTGTAAACCTTCTTAAAAT
26215183 AAA
1 AAA
26215186 ATGATAGTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.39
Consensus pattern (59 bp):
AAATTTCTTTACAAAAATTTCACATAATAATTCTATCATGCTGTAAACCTTCTTAAAAT
Found at i:26220245 original size:43 final size:43
Alignment explanation
Indices: 26220197--26220461 Score: 440
Period size: 43 Copynumber: 6.2 Consensus size: 43
26220187 GCATGAAACT
*
26220197 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
26220240 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
26220283 CGATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
26220326 CGATGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
26220369 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * **
26220412 CGGTGATGTGTATTCAGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
26220455 CGGTGAT
1 CGGTGAT
26220462 TCGAGCAAGG
Statistics
Matches: 209, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 209 1.00
ACGTcount: A:0.12, C:0.23, G:0.34, T:0.31
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:26220680 original size:29 final size:28
Alignment explanation
Indices: 26220640--26220780 Score: 133
Period size: 29 Copynumber: 4.9 Consensus size: 28
26220630 CAAATTCCTT
26220640 TAACCGAGCACTATGTGTGCGAGATCAG
1 TAACCGAGCACTATGTGTGCGAGATCAG
** * **
26220668 TAATTGAGGCACTGTGTGTGCGA-ATTCCTT
1 TAACCGA-GCACTATGTGTGCGAGA-T-CAG
26220698 TAACCGAGCACTATGTGTGCGAGATCAG
1 TAACCGAGCACTATGTGTGCGAGATCAG
** * * *
26220726 TAATTGAGGCACTGTGTGTGCGAGTTC-T
1 TAACCGA-GCACTATGTGTGCGAGATCAG
26220754 TCAACCGAGCACTATGTGTGCGAGATC
1 T-AACCGAGCACTATGTGTGCGAGATC
26220781 GGTCAGTGGG
Statistics
Matches: 88, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
28 30 0.34
29 51 0.58
30 7 0.08
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (28 bp):
TAACCGAGCACTATGTGTGCGAGATCAG
Found at i:26220684 original size:58 final size:58
Alignment explanation
Indices: 26220615--26220780 Score: 280
Period size: 58 Copynumber: 2.9 Consensus size: 58
26220605 CGAATGATTA
* * *
26220615 GAGGCATTGTGTTTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
26220673 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* *
26220731 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATC
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATC
26220781 GGTCAGTGGG
Statistics
Matches: 103, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 28 0.27
58 75 0.73
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
Found at i:26220793 original size:28 final size:27
Alignment explanation
Indices: 26220647--26220801 Score: 78
Period size: 29 Copynumber: 5.4 Consensus size: 27
26220637 CTTTAACCGA
* *
26220647 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATC-GTCACTG-G
* * * * *
26220676 GCACTGTGTGTGCGA-ATTCCTTTAACCGA
1 GCACTATGTGTGCGAGA-T-C-GTCACTGG
* *
26220705 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATC-GTCACTG-G
* * * * *
26220734 GCACTGTGTGTGCGAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGATCGTC-ACTGG
*
26220762 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATC-GTCACTGG
*
26220790 GCACTAAGTGTG
1 GCACTATGTGTG
26220802 TGAAATGAGA
Statistics
Matches: 94, Mismatches: 26, Indels: 13
0.71 0.20 0.10
Matches are distributed among these distances:
28 37 0.39
29 51 0.54
30 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCGTCACTGG
Found at i:26229541 original size:37 final size:37
Alignment explanation
Indices: 26229483--26229733 Score: 352
Period size: 37 Copynumber: 6.9 Consensus size: 37
26229473 GCTCAGACGA
* * * *
26229483 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26229520 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
** *
26229557 AATCTCCACACGTAGTCATCTAG-C-T---CAGACGA-
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGAC-AT
* * *
26229589 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26229626 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
26229663 AATCTCCAAACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26229700 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
26229734 ATATATTTCC
Statistics
Matches: 189, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
32 22 0.12
33 2 0.01
34 1 0.01
35 1 0.01
36 2 0.01
37 161 0.85
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:26229656 original size:106 final size:106
Alignment explanation
Indices: 26229471--26229682 Score: 406
Period size: 106 Copynumber: 2.0 Consensus size: 106
26229461 GCGAGACCTT
26229471 TAGCTCAGACGAAATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGT
1 TAGCTCAGACGAAATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGT
*
26229536 CATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATC
66 CATCGGGTCTTACCCGGACATAATCTCCAAACGTAGTCATC
*
26229577 TAGCTCAGACGAAATCTCCACATGAAGTTATCGGGTCTTACCCGGACATAATCTCCACACGTAGT
1 TAGCTCAGACGAAATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGT
26229642 CATCGGGTCTTACCCGGACATAATCTCCAAACGTAGTCATC
66 CATCGGGTCTTACCCGGACATAATCTCCAAACGTAGTCATC
26229683 GGGTCTTACC
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (106 bp):
TAGCTCAGACGAAATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGT
CATCGGGTCTTACCCGGACATAATCTCCAAACGTAGTCATC
Found at i:26230014 original size:47 final size:47
Alignment explanation
Indices: 26229940--26230422 Score: 635
Period size: 47 Copynumber: 10.0 Consensus size: 47
26229930 TCACGTTTGG
* * * **
26229940 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
26229987 CATTGGCCATTTGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
26230034 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
26230081 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
26230132 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
26230179 CATTGGCCATTCAGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
26230230 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
26230277 -TTGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CAT-TGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*** *
26230324 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
26230375 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
26230422 C
1 C
26230423 TTAAAATCCT
Statistics
Matches: 386, Mismatches: 36, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
46 1 0.00
47 254 0.66
48 1 0.00
51 130 0.34
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:26230403 original size:145 final size:145
Alignment explanation
Indices: 26229940--26230422 Score: 706
Period size: 145 Copynumber: 3.3 Consensus size: 145
26229930 TCACGTTTGG
* * * ** * *
26229940 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTTGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTT
* * * ***
26230005 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT---
66 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACG
26230067 -GTTCACATTCATCA
131 GGTTCACATTCATCA
*** *
26230081 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATCCATCACATTGGCCATTCGG
*
26230146 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATATATA
62 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATA
26230211 TACGGGTTCACATTCATCA
127 TACGGGTTCACATTCATCA
*
26230230 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA-TTGTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT-TGGCCATTCGGCCT
26230294 TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATAC
65 TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATAC
*
26230359 GGGTTCATATTCATCA
130 GGGTTCACATTCATCA
26230375 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCAC
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCAC
26230423 TTAAAATCCT
Statistics
Matches: 312, Mismatches: 20, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
141 28 0.09
144 1 0.00
145 239 0.77
149 44 0.14
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (145 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTT
ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACG
GGTTCACATTCATCA
Found at i:26230409 original size:98 final size:94
Alignment explanation
Indices: 26229940--26230422 Score: 644
Period size: 98 Copynumber: 5.0 Consensus size: 94
26229930 TCACGTTTGG
* * * ** *
26229940 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTTGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
26230005 ATCTCATATATGCATGTTCACATTCATCA
66 ATCACACATATGCATGTTCACATTCATCA
26230034 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
**
26230099 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATGCAT----GTTCACATTCATCA
*
26230132 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
**
26230197 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATGCAT----GTTCACATTCATCA
* *
26230230 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA-TTGTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT-TGGCCATTCGGCCT
*
26230294 TATCACACATACGCATGTTCACATTCATCA
65 TATCACACATATGCATGTTCACATTCATCA
*** *
26230324 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCATATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATTGGCCATTCGG
* *
26230389 CCTTATCACACATACGCATGTTCACATCCATCA
62 CCTTATCACACATATGCATGTTCACATTCATCA
26230422 C
1 C
26230423 TTAAAATCCT
Statistics
Matches: 355, Mismatches: 24, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
94 114 0.32
97 1 0.00
98 239 0.67
99 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATGCATGTTCACATTCATCA
Found at i:26232755 original size:85 final size:85
Alignment explanation
Indices: 26232605--26232783 Score: 333
Period size: 85 Copynumber: 2.1 Consensus size: 85
26232595 TATTTTATTG
*
26232605 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26232670 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26232690 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATG-TTT
26232754 TTAGCCATAACATCTTGTCCA
65 TTAGCCATAACATCTTGTCCA
26232775 CCCATGCTC
1 CCCATGCTC
26232784 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
84 20 0.22
85 72 0.78
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:26234306 original size:57 final size:58
Alignment explanation
Indices: 26234231--26234339 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
26234221 GCCCACTGAT
* *
26234231 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCACACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCACACACACAGTGCCTCAATTAC
* * **
26234288 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCACACACACAGTGCCTC
26234340 TAATCATTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 24 0.53
58 21 0.47
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCACACACACAGTGCCTCAATTAC
Found at i:26234583 original size:40 final size:40
Alignment explanation
Indices: 26234551--26234900 Score: 533
Period size: 40 Copynumber: 8.8 Consensus size: 40
26234541 CCAGCATGAT
* * * *
26234551 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
26234591 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * ** * *
26234631 TGATCTTCGAAACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26234671 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26234711 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26234751 TGCTCCTC-GGACTTAGCCCGGATATA-CACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26234789 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26234829 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26234869 TACTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
26234901 CTCAATTCTC
Statistics
Matches: 284, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
38 20 0.07
39 36 0.13
40 228 0.80
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:26234847 original size:158 final size:160
Alignment explanation
Indices: 26234551--26234900 Score: 542
Period size: 158 Copynumber: 2.2 Consensus size: 160
26234541 CCAGCATGAT
* * * * **
26234551 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
* *
26234616 TATCACTAGCACGAATGATCTTCGAAACTTAGCCTGGATACATCACTAGCACGAATGCTCCTCGG
66 TATCACTAGCACGAATGATCCTCGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGG
*
26234681 GACTTAGCCCGGATATATCACTAGCACGAA
131 GACTTAGCCCGGATACATCACTAGCACGAA
* *
26234711 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC-GGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
* ** *
26234775 TA-CACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGG
66 TATCACTAGCACGAATGATCCTCGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGG
26234839 GACTTAGCCCGGATACATCACTAGCACGAA
131 GACTTAGCCCGGATACATCACTAGCACGAA
*
26234869 TACTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
26234901 CTCAATTCTC
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
158 115 0.66
159 15 0.09
160 43 0.25
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (160 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
TATCACTAGCACGAATGATCCTCGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGG
GACTTAGCCCGGATACATCACTAGCACGAA
Found at i:26236213 original size:37 final size:37
Alignment explanation
Indices: 26236155--26236336 Score: 328
Period size: 37 Copynumber: 4.9 Consensus size: 37
26236145 GCTCAGATGA
* * * *
26236155 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26236192 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26236229 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26236266 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
26236303 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
26236337 ATATATTTCC
Statistics
Matches: 141, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 141 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:26236615 original size:47 final size:47
Alignment explanation
Indices: 26236541--26237169 Score: 882
Period size: 47 Copynumber: 13.1 Consensus size: 47
26236531 TCACGTTTCG
* * * **
26236541 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
26236588 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
26236635 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
26236682 CATTGGCCACTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
26236733 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
26236780 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
26236831 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA-TCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
26236877 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
26236924 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
26236975 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
26237022 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
26237069 CATTGGCCATTCGGCCTTATCACACATATATATATGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC--ATACGCAT--GTTCACATTCATCA
*
26237120 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
26237167 CAT
1 CAT
26237170 AAAATCCTAA
Statistics
Matches: 525, Mismatches: 40, Indels: 34
0.88 0.07 0.06
Matches are distributed among these distances:
46 45 0.09
47 300 0.57
49 10 0.02
51 170 0.32
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:26236729 original size:145 final size:142
Alignment explanation
Indices: 26236541--26237168 Score: 936
Period size: 145 Copynumber: 4.3 Consensus size: 142
26236531 TCACGTTTCG
* * * ** *
26236541 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACAGTGGCCATTCGGCCTT
* * * ***
26236606 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT-GT
66 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATGGT
26236670 TCACATTCATCA
131 TCACATTCATCA
* * * *
26236682 CATTGGCCACTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATACACAT----GTTCACATTCATCACAGTGGCCATTCGG
26236747 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATA
62 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATA
26236812 TACGGGTTCACATTCATCA
127 T---GGTTCACATTCATCA
*
26236831 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA-TCATCACAGTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACAGTGGCCATTCGGCCTT
26236895 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACG
66 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATAT---
26236960 GGTTCACATTCATCA
128 GGTTCACATTCATCA
* *
26236975 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACAGTGGCCATTCGGCCTT
26237040 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATATG
66 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC--ATATATAT-
26237105 GGTTCACATTCATCA
128 GGTTCACATTCATCA
* *
26237120 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
26237169 TAAAATCCTA
Statistics
Matches: 458, Mismatches: 18, Indels: 18
0.93 0.04 0.04
Matches are distributed among these distances:
141 27 0.06
144 143 0.31
145 237 0.52
147 8 0.02
149 43 0.09
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (142 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACAGTGGCCATTCGGCCTT
ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATGGT
TCACATTCATCA
Found at i:26236749 original size:98 final size:98
Alignment explanation
Indices: 26236541--26237169 Score: 915
Period size: 98 Copynumber: 6.5 Consensus size: 98
26236531 TCACGTTTCG
* * * **
26236541 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * **
26236606 AT--CTC--ATATATGCATGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
*
26236635 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCACTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
26236700 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
26236733 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
26236798 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
*
26236831 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA-TCATCACAGTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
***
26236895 ATCACACATACGCAT----GTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
***
26236924 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATTGGCCATTCGG
*** *
26236989 CCTTATCACACATACGCAT----GTTCACATCCATCA
62 CCTTATCACACATATATATACGGGTTCACATTCATCA
*
26237022 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
26237087 ATCACACATATATATATGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
*
26237120 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
26237170 AAAATCCTAA
Statistics
Matches: 492, Mismatches: 30, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
93 44 0.09
94 105 0.21
96 2 0.00
97 42 0.09
98 299 0.61
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACGGGTTCACATTCATCA
Found at i:26239481 original size:85 final size:85
Alignment explanation
Indices: 26239352--26239530 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
26239342 TATTTTATTG
*
26239352 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26239417 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26239437 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26239502 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26239522 CCCATGCTC
1 CCCATGCTC
26239531 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:26241498 original size:18 final size:18
Alignment explanation
Indices: 26241475--26241509 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26241465 TAGGCACTCA
*
26241475 AAGAATTCAGTTTTGGGG
1 AAGAATTCAGCTTTGGGG
*
26241493 AAGAATTTAGCTTTGGG
1 AAGAATTCAGCTTTGGG
26241510 TGAGTTTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.31, T:0.34
Consensus pattern (18 bp):
AAGAATTCAGCTTTGGGG
Found at i:26243172 original size:34 final size:33
Alignment explanation
Indices: 26243129--26243192 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
26243119 TGCATATCTG
* *
26243129 CACTGTACTGTTACTG-AGATGGGCTCAGGCTCA
1 CACTGTACTGATACTGTA-ATGGGCTAAGGCTCA
26243162 CACTGATACTGATACTGTAATGGGCTAAGGC
1 CACTG-TACTGATACTGTAATGGGCTAAGGC
26243193 CCTGACTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 5 0.19
34 21 0.78
35 1 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (33 bp):
CACTGTACTGATACTGTAATGGGCTAAGGCTCA
Found at i:26268183 original size:13 final size:13
Alignment explanation
Indices: 26268165--26268189 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26268155 CCGAACACAC
26268165 GCTCGTGTCCCTG
1 GCTCGTGTCCCTG
26268178 GCTCGTGTCCCT
1 GCTCGTGTCCCT
26268190 CACATGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCTCGTGTCCCTG
Found at i:26271396 original size:20 final size:20
Alignment explanation
Indices: 26271351--26271396 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
26271341 GAGGACATGG
*
26271351 GCGTGTCCCGAGCCACATGA
1 GCGTGTCCCGAGCCACATAA
*
26271371 GAGTGTCCCGAGCCACATAA
1 GCGTGTCCCGAGCCACATAA
26271391 GCGTGT
1 GCGTGT
26271397 TTGACCACAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.17
Consensus pattern (20 bp):
GCGTGTCCCGAGCCACATAA
Found at i:26272407 original size:37 final size:36
Alignment explanation
Indices: 26272359--26272442 Score: 96
Period size: 37 Copynumber: 2.3 Consensus size: 36
26272349 TGTGAGTACG
* *
26272359 TGTAAAACCATAACAAGGCTATGGCATTGTAATAGCC
1 TGTAAGACCATAACAAGGCTATGGCATTGTAATA-CA
**** *
26272396 TGTAAGACCATATTTGGGCTATGGCATTGTGATACA
1 TGTAAGACCATAACAAGGCTATGGCATTGTAATACA
26272432 TGTAAGACCAT
1 TGTAAGACCAT
26272443 GTCTGGGACA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 12 0.30
37 28 0.70
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (36 bp):
TGTAAGACCATAACAAGGCTATGGCATTGTAATACA
Found at i:26272456 original size:36 final size:37
Alignment explanation
Indices: 26272375--26272458 Score: 109
Period size: 36 Copynumber: 2.3 Consensus size: 37
26272365 ACCATAACAA
* *
26272375 GGCTATGGCATTGTAATAGCCTGTAAGACCATATTTG
1 GGCTATGGCATTGTAATAGCATGTAAGACCATATCTG
* *
26272412 GGCTATGGCATTGTGATA-CATGTAAGACCATGTCTG
1 GGCTATGGCATTGTAATAGCATGTAAGACCATATCTG
26272448 GGAC-ATGGCAT
1 GG-CTATGGCAT
26272459 CGATATGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 24 0.57
37 18 0.43
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (37 bp):
GGCTATGGCATTGTAATAGCATGTAAGACCATATCTG
Found at i:26272479 original size:42 final size:41
Alignment explanation
Indices: 26272432--26272626 Score: 142
Period size: 42 Copynumber: 4.7 Consensus size: 41
26272422 TTGTGATACA
26272432 TGTAAGACCATGTCTGGGACATGGCATCGATATGAAATTATG
1 TGTAAGACCATGTCTGGGACATGGCATCGATATGAAATT-TG
* * * * * * *
26272474 TGTAAGACTATATCTGAGATATGGCTTCGGTATGAGATTTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGATATGAAATTT-G
* * ** * *
26272516 TGTAAGACCGTGTCTAGGATGTGGCATCGATATGTGATTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGATATG-AAATTTG
* * * * * * *
26272558 TATAAGACCATGTTTGGGACATAGCATTGATGTGAGACTTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGATATGA-AATTTG
26272600 TGTAAGACCATAGT-T-GGACTATGGCAT
1 TGTAAGACCAT-GTCTGGGAC-ATGGCAT
26272627 TAAGTAAACG
Statistics
Matches: 116, Mismatches: 32, Indels: 10
0.73 0.20 0.06
Matches are distributed among these distances:
41 5 0.04
42 106 0.91
43 5 0.04
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.32
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATATGAAATTTG
Found at i:26276616 original size:40 final size:40
Alignment explanation
Indices: 26276572--26276647 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
26276562 TGGCTAAGAA
* *
26276572 TGGCACTTAGTGTGCGGTTTGAGATAGCTTTGGCTAAATG
1 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTAAATG
* * *
26276612 TGGCATTTGGTGTGCGATTTGTGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTA
26276648 TATATATATG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTAAATG
Found at i:26276693 original size:28 final size:29
Alignment explanation
Indices: 26276662--26276734 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 29
26276652 TATATGTGTG
*
26276662 TGGCACTTAGTGTGCGAAATATTGAG-AA
1 TGGCACTTAGTGTGCGAAATATTAAGTAA
* * * *
26276690 TGGCACTTGGTATGTGAGATATTAAGTAA
1 TGGCACTTAGTGTGCGAAATATTAAGTAA
*
26276719 -GGAACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
26276735 GACATCGAAG
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGCACTTAGTGTGCGAAATATTAAGTAA
Found at i:26284272 original size:28 final size:28
Alignment explanation
Indices: 26284232--26284295 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
26284222 GTGTCCTTAT
26284232 CCCGTGTCCCTCACATGGCCTAGACACA
1 CCCGTGTCCCTCACATGGCCTAGACACA
26284260 CCCGTGTCCCTCACATGGCCTAGACACA
1 CCCGTGTCCCTCACATGGCCTAGACACA
*
26284288 CCCTTGTC
1 CCCGTGTC
26284296 ATAGTTTGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.19, C:0.44, G:0.17, T:0.20
Consensus pattern (28 bp):
CCCGTGTCCCTCACATGGCCTAGACACA
Found at i:26290291 original size:46 final size:46
Alignment explanation
Indices: 26290224--26290316 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
26290214 TTTAATCAAG
*
26290224 ATTATTTACAAGTGTATAATTGTGTTTTACTTTGAATTTGGTAACC
1 ATTATTTACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACC
26290270 ATTATTTACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACC
1 ATTATTTACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACC
26290316 A
1 A
26290317 CTAAGCACAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (46 bp):
ATTATTTACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACC
Found at i:26290327 original size:46 final size:46
Alignment explanation
Indices: 26290231--26290328 Score: 151
Period size: 46 Copynumber: 2.1 Consensus size: 46
26290221 AAGATTATTT
* * ***
26290231 ACAAGTGTATAATTGTGTTTTACTTTGAATTTGGTAACCATTATTT
1 ACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACCACTAAGC
26290277 ACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACCACTAAGC
1 ACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACCACTAAGC
26290323 ACAAGT
1 ACAAGT
26290329 AGTAGAAAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (46 bp):
ACAAGTCTATAATTGTGTTTTACTTTGAATTTGGTAACCACTAAGC
Found at i:26292849 original size:19 final size:18
Alignment explanation
Indices: 26292825--26292868 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
26292815 TAAAAAGAGA
26292825 GAGAAATGGGCCGAAAATG
1 GAGAAATGGGCC-AAAATG
*
26292844 GAGAAAATGGGCCAACATG
1 GAG-AAATGGGCCAAAATG
26292863 G-GAAAT
1 GAGAAAT
26292869 CAACATGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 4 0.17
18 1 0.04
19 9 0.39
20 9 0.39
ACGTcount: A:0.43, C:0.11, G:0.34, T:0.11
Consensus pattern (18 bp):
GAGAAATGGGCCAAAATG
Found at i:26299704 original size:13 final size:13
Alignment explanation
Indices: 26299686--26299726 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
26299676 CATGGGTGGC
26299686 GATACGACCGTGT
1 GATACGACCGTGT
26299699 GATACGACCGTGT
1 GATACGACCGTGT
*
26299712 GATACGGCCGTGT
1 GATACGACCGTGT
26299725 GA
1 GA
26299727 AACCAGAGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (13 bp):
GATACGACCGTGT
Found at i:26300166 original size:7 final size:6
Alignment explanation
Indices: 26300138--26300176 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
26300128 TTTAAACTCA
* *
26300138 TTTTAT TTTTATT TTTTAT TTTTAC TTTTAT TTCTAT TT
1 TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TT
26300177 ATTTTTGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:26306087 original size:9 final size:9
Alignment explanation
Indices: 26306075--26306130 Score: 53
Period size: 9 Copynumber: 6.2 Consensus size: 9
26306065 GAAAATTTAA
26306075 AAAAATATT
1 AAAAATATT
26306084 AAAAATA-T
1 AAAAATATT
*
26306092 AAAAATTTT
1 AAAAATATT
* *
26306101 AAATAAAATA
1 AAA-AATATT
26306111 AAAAATAGTT
1 AAAAATA-TT
26306121 AAAAAT-TT
1 AAAAATATT
26306129 AA
1 AA
26306131 GTCAAGAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
8 11 0.29
9 14 0.37
10 13 0.34
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATATT
Found at i:26306114 original size:27 final size:28
Alignment explanation
Indices: 26306066--26306128 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 28
26306056 TTTCAAATAG
26306066 AAAA-TTTAAAAAAATATTAAAAATA-TA
1 AAAATTTTAAAAAAATA-TAAAAATAGTA
26306093 AAAATTTTAAATAAAATA-AAAAATAGTTA
1 AAAATTTTAAA-AAAATATAAAAATAG-TA
26306122 AAAATTT
1 AAAATTT
26306129 AAGTCAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
27 11 0.34
28 6 0.19
29 15 0.47
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (28 bp):
AAAATTTTAAAAAAATATAAAAATAGTA
Found at i:26306122 original size:20 final size:18
Alignment explanation
Indices: 26306074--26306125 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
26306064 AGAAAATTTA
*
26306074 AAAAAATATTAAAAATAT
1 AAAAAATATTAAAAAAAT
*
26306092 -AAAAATTTTAAATAAAAT
1 AAAAAATATTAAA-AAAAT
26306110 AAAAAATAGTTAAAAA
1 AAAAAATA-TTAAAAA
26306126 TTTAAGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 11 0.39
18 4 0.14
19 8 0.29
20 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (18 bp):
AAAAAATATTAAAAAAAT
Found at i:26306129 original size:28 final size:27
Alignment explanation
Indices: 26306066--26306130 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
26306056 TTTCAAATAG
*
26306066 AAAATTTAAAAAAATATTAAAAATATA
1 AAAATTTAAAAAAATATAAAAAATATA
*
26306093 AAAATTTTAAATAAA-ATAAAAAATAGTTA
1 AAAA-TTTAAAAAAATATAAAAAATA--TA
26306122 AAAATTTAA
1 AAAATTTAA
26306131 GTCAAGAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 13 0.39
28 14 0.42
29 6 0.18
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAATTTAAAAAAATATAAAAAATATA
Found at i:26310006 original size:16 final size:17
Alignment explanation
Indices: 26309975--26310007 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26309965 TTCATAAGTA
26309975 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
26309992 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
26310008 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:26310613 original size:46 final size:46
Alignment explanation
Indices: 26310303--26310611 Score: 433
Period size: 46 Copynumber: 6.7 Consensus size: 46
26310293 TGGCATACTG
* * *
26310303 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATGGTA
*
26310349 TCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTA
* *** *
26310395 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTA
* * *
26310441 TCTTTCAACCATGGTCTTATTCATTTCATATCACGTTACCTTGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTA
* *
26310487 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTA
* *
26310533 TCTTTCAAACATGGTCTTACACATTTCATATCA-GATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACG-TTGCCATGGTA
*
26310579 TCTTTCAACCATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCA
26310612 GAGAGCACAC
Statistics
Matches: 240, Mismatches: 21, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
45 5 0.02
46 235 0.98
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTA
Found at i:26315266 original size:16 final size:17
Alignment explanation
Indices: 26315235--26315267 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26315225 TTCATAAGTA
26315235 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
26315252 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
26315268 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:26315873 original size:46 final size:46
Alignment explanation
Indices: 26315563--26315871 Score: 460
Period size: 46 Copynumber: 6.7 Consensus size: 46
26315553 TGGCATACTG
* *
26315563 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATGGTA
*
26315609 TCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
* * *
26315655 TCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
* * *
26315701 TTTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
* *
26315747 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
*
26315793 TCTTTCAACCATGGTCTTACACATTTCATATCA-GATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATG-TTGCCATGGTA
* *
26315839 TCTTTCAACAATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCA
26315872 GAGAGCACAC
Statistics
Matches: 247, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
45 5 0.02
46 242 0.98
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
Found at i:26318048 original size:30 final size:30
Alignment explanation
Indices: 26317981--26318048 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
26317971 CACCATTAAA
* *
26317981 ATATTTGCACTATTAGTCCTTCAAATTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
26318011 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
26318040 AGTATTTAC
1 A-TATTTAC
26318049 TCTTGGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:26322758 original size:12 final size:12
Alignment explanation
Indices: 26322741--26322771 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
26322731 CTCAAGTTTT
26322741 CACACGGCCTAG
1 CACACGGCCTAG
26322753 CACACGGCCTAG
1 CACACGGCCTAG
26322765 CACACGG
1 CACACGG
26322772 GTATGTGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.42, G:0.26, T:0.06
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:26329875 original size:7 final size:7
Alignment explanation
Indices: 26329865--26329891 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26329855 GAGTTCTGGA
26329865 TTCAAGG
1 TTCAAGG
26329872 TTCAAGG
1 TTCAAGG
26329879 TTCAAGG
1 TTCAAGG
26329886 TTCAAG
1 TTCAAG
26329892 ATTCGAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (7 bp):
TTCAAGG
Found at i:26329906 original size:7 final size:7
Alignment explanation
Indices: 26329896--26329934 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
26329886 TTCAAGATTC
26329896 GAGTTTG
1 GAGTTTG
26329903 GAGTTTG
1 GAGTTTG
26329910 GAGTTTAG
1 GAGTTT-G
26329918 G-GTTTG
1 GAGTTTG
*
26329924 GAGTTTA
1 GAGTTTG
26329931 GAGT
1 GAGT
26329935 AAAACAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 2 0.07
7 25 0.86
8 2 0.07
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (7 bp):
GAGTTTG
Found at i:26332248 original size:27 final size:27
Alignment explanation
Indices: 26332218--26332391 Score: 178
Period size: 27 Copynumber: 6.4 Consensus size: 27
26332208 GTACGTTGCC
* **
26332218 AAGGCATTCCTTTCAGAGT-TTTCCATG
1 AAGGCATTCCTTTCAGA-TATTGCCACA
* *
26332245 AAGGCATTCCCTTT-AGAGTCTT-CCACG
1 AAGGCATT-CCTTTCAGA-TATTGCCACA
26332272 AAGGCATTCCCTTT-AGAGT-TTGCCACA
1 AAGGCATT-CCTTTCAGA-TATTGCCACA
*
26332299 AAGGCATTCCTTTCATATATTGCCACA
1 AAGGCATTCCTTTCAGATATTGCCACA
*
26332326 AAGGCATTCCTTTCATATATTGCCACA
1 AAGGCATTCCTTTCAGATATTGCCACA
* * *
26332353 AAGGCATTCCTTTCATATATTTCCACT
1 AAGGCATTCCTTTCAGATATTGCCACA
26332380 AAGGCATTCCTT
1 AAGGCATTCCTT
26332392 CTCAAGCATG
Statistics
Matches: 137, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
26 8 0.06
27 122 0.89
28 7 0.05
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (27 bp):
AAGGCATTCCTTTCAGATATTGCCACA
Found at i:26332330 original size:54 final size:53
Alignment explanation
Indices: 26332218--26332391 Score: 201
Period size: 54 Copynumber: 3.2 Consensus size: 53
26332208 GTACGTTGCC
* ** * * *
26332218 AAGGCATTCCTTTCAGAGTTTTCCATGAAGGCATTCCCTTT-AGAGTCTTCCACG
1 AAGGCATTCCTTTCAGAGTTTGCCACAAAGGCATT-CCTTTCATA-TATTCCACA
26332272 AAGGCATTCCCTTT-AGAGTTTGCCACAAAGGCATTCCTTTCATATATTGCCACA
1 AAGGCATT-CCTTTCAGAGTTTGCCACAAAGGCATTCCTTTCATATATT-CCACA
* *
26332326 AAGGCATTCCTTTCATA-TATTGCCACAAAGGCATTCCTTTCATATATTTCCACT
1 AAGGCATTCCTTTCAGAGT-TTGCCACAAAGGCATTCCTTTCATATA-TTCCACA
26332380 AAGGCATTCCTT
1 AAGGCATTCCTT
26332392 CTCAAGCATG
Statistics
Matches: 106, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
53 14 0.13
54 85 0.80
55 7 0.07
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (53 bp):
AAGGCATTCCTTTCAGAGTTTGCCACAAAGGCATTCCTTTCATATATTCCACA
Found at i:26334390 original size:26 final size:26
Alignment explanation
Indices: 26334361--26334467 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
26334351 TGGTACAAAT
26334361 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26334387 TGATAAT-GGTTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26334412 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26334438 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26334464 TGAT
1 TGAT
26334468 GGGCATTCCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26334421 original size:51 final size:52
Alignment explanation
Indices: 26334361--26334467 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
26334351 TGGTACAAAT
26334361 TGATAATGGGTTAGGTAAATGTTCCATGATAATGG-TTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGATAAATATTCCA
* *
26334412 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGATAAATATTCCA
26334464 TGAT
1 TGAT
26334468 GGGCATTCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 35 0.66
52 18 0.34
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGATAAATATTCCA
Found at i:26341471 original size:26 final size:26
Alignment explanation
Indices: 26341442--26341549 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
26341432 TGGTACAAAT
26341442 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26341468 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26341494 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26341520 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26341546 TGAT
1 TGAT
26341550 GGGCATTCCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26344615 original size:21 final size:21
Alignment explanation
Indices: 26344571--26344620 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
26344561 TAATTATTAT
26344571 TATATAAATTAAAAAATCATAA
1 TATATAAATTAAAAAA-CATAA
*
26344593 TATATAATATTATAAAA-ATAA
1 TATATAA-ATTAAAAAACATAA
26344614 TATATAA
1 TATATAA
26344621 CCTACTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.42
22 7 0.27
23 8 0.31
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TATATAAATTAAAAAACATAA
Found at i:26349838 original size:22 final size:24
Alignment explanation
Indices: 26349810--26349853 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
26349800 GCATGTTATT
26349810 TTTTTGTTC-TGT-TTCTTCTTGG
1 TTTTTGTTCTTGTGTTCTTCTTGG
26349832 TTTTTGTTCTTGTGTTCTTCTT
1 TTTTTGTTCTTGTGTTCTTCTT
26349854 TTTGCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.16, T:0.70
Consensus pattern (24 bp):
TTTTTGTTCTTGTGTTCTTCTTGG
Found at i:26364767 original size:12 final size:12
Alignment explanation
Indices: 26364750--26364781 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26364740 AATTATTTAT
26364750 TATAATTAATAC
1 TATAATTAATAC
*
26364762 TATAATTAATAG
1 TATAATTAATAC
26364774 TATAATTA
1 TATAATTA
26364782 TTTTAATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (12 bp):
TATAATTAATAC
Found at i:26374550 original size:25 final size:25
Alignment explanation
Indices: 26374518--26374573 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
26374508 AGGTTATTCT
* *
26374518 AGATAATTTTCC-CTAAATACTTTAC
1 AGATAATTTTCCAC-AAAGACCTTAC
26374543 AGATAATTTTCCACAAAGACCTTAC
1 AGATAATTTTCCACAAAGACCTTAC
26374568 AGATAA
1 AGATAA
26374574 CACGCCACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 27 0.96
26 1 0.04
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (25 bp):
AGATAATTTTCCACAAAGACCTTAC
Found at i:26375863 original size:16 final size:16
Alignment explanation
Indices: 26375839--26375887 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
26375829 CAAAACTCTA
26375839 AGGCGTACTCTTTCTT
1 AGGCGTACTCTTTCTT
*
26375855 AGTCGTACTCTTTCTT
1 AGGCGTACTCTTTCTT
*
26375871 AGGCGTAATCTTTCTT
1 AGGCGTACTCTTTCTT
26375887 A
1 A
26375888 ACTTGAAGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.45
Consensus pattern (16 bp):
AGGCGTACTCTTTCTT
Found at i:26378054 original size:44 final size:42
Alignment explanation
Indices: 26377978--26378077 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 42
26377968 TGATATGTGT
* ** *
26377978 TTTCATGTAAGACCACGTCTGGGATGTTGGCATCGACT-TATGA
1 TTTCGTGTAAGACCACGTCTGGGACATCGGCATC-A-TATATGA
* * *
26378021 TTTACGTGTAAGACCATGTTTGGGACATCGGCATCATATTTGA
1 TTT-CGTGTAAGACCACGTCTGGGACATCGGCATCATATATGA
26378064 TTTCGTGTAAGACC
1 TTTCGTGTAAGACC
26378078 CTGTCTAGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 12 0.25
43 11 0.23
44 25 0.52
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGGACATCGGCATCATATATGA
Found at i:26378096 original size:42 final size:44
Alignment explanation
Indices: 26378018--26378105 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 44
26378008 CATCGACTTA
* *
26378018 TGATTTACGTGTAAGACCATGTTTGGGACATCGGCA-TCATATT
1 TGATTTACGTGTAAGACCATGTCTAGGACATCGGCATTCATATT
* *
26378061 TGATTT-CGTGTAAGACCCTGTCTAGGACAGT-GGCATTGATATT
1 TGATTTACGTGTAAGACCATGTCTAGGACA-TCGGCATTCATATT
26378104 TG
1 TG
26378106 GTTACATGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 24 0.62
43 15 0.38
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (44 bp):
TGATTTACGTGTAAGACCATGTCTAGGACATCGGCATTCATATT
Found at i:26389414 original size:21 final size:22
Alignment explanation
Indices: 26389378--26389428 Score: 86
Period size: 21 Copynumber: 2.3 Consensus size: 22
26389368 TTGAAAGCAA
26389378 AAATGAATAGTGTGTTTGAATAG
1 AAATGAATA-TGTGTTTGAATAG
26389401 AAATGAAT-TGTGTTTGAATAG
1 AAATGAATATGTGTTTGAATAG
26389422 AAATGAA
1 AAATGAA
26389429 AGGAATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 20 0.71
23 8 0.29
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.33
Consensus pattern (22 bp):
AAATGAATATGTGTTTGAATAG
Found at i:26397481 original size:46 final size:48
Alignment explanation
Indices: 26397295--26397567 Score: 235
Period size: 46 Copynumber: 5.8 Consensus size: 48
26397285 AACGTGTAAT
* ** **
26397295 GCCGATGCCACGTCCCAGACATGGTCTTACACT-GACTAACGAAATCG-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ATCTCGTA
* *
26397343 GGCCGACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATCTCCGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATCT-CGTA
* * *
26397394 GCCGATGCCATGCCCCAGACATGGTCTTACACT-G-GCACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTA
* * *
26397440 GCCGATG-CATGTCCTAGACAT-GTCTTACTCTAGCTCTCATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTA
* * * * *
26397485 TGCCGATGCCATGTCCCATACATGGTCTTGCACTGGCTCTCATAAT-GTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTCGTA
26397534 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
26397568 GCACAAATGA
Statistics
Matches: 182, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
44 9 0.05
45 17 0.09
46 37 0.20
47 25 0.14
48 24 0.13
49 34 0.19
50 33 0.18
51 3 0.02
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTA
Found at i:26397553 original size:94 final size:95
Alignment explanation
Indices: 26397292--26397567 Score: 319
Period size: 94 Copynumber: 2.9 Consensus size: 95
26397282 CATAACGTGT
* * ** * *
26397292 AATGCCGATGCCACGTCCCAGACATGGTCTTACACTGACTAACGA-AATCGAGGCCGACGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAAT-GTGGCCGATG-CATG
26397356 TCCTAGACATGGTCTTACACTAGCTCTCACATCTC
63 TCCTAGACAT-GTCTTACACTAGCTCT-ACATCTC
** * * * *
26397391 CGTGCCGATGCCATGCCCCAGACATGGTCTTACACTGGCACATC-T--CGTAGCCGATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCCGATGCATGTC
*
26397453 CTAGACATGTCTTACTCTAGCTCT-CATCTC
65 CTAGACATGTCTTACACTAGCTCTACATCTC
* *
26397483 AATGCCGATGCCATGTCCCATACATGGTCTTGCACTGGCTCTCATAATGTGGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
*
26397548 CAGACATGTCTTACACTAGC
66 TAGACATGTCTTACACTAGC
26397568 GCACAAATGA
Statistics
Matches: 149, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
91 2 0.01
92 42 0.28
94 49 0.33
95 14 0.09
96 7 0.05
99 34 0.23
100 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (95 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
TAGACATGTCTTACACTAGCTCTACATCTC
Found at i:26399240 original size:27 final size:27
Alignment explanation
Indices: 26399218--26399423 Score: 254
Period size: 27 Copynumber: 7.6 Consensus size: 27
26399208 TTAGTTTACC
26399218 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
26399245 AAATTACCAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
26399272 AAATGACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* ** *
26399299 AAATTACTAAAATACCTTTTA-TTTATA
1 AAATTACCAAAATACC-CCTAGTTTGTA
26399326 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
26399353 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
26399380 AAATTATCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
**
26399407 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
26399424 TCGACCTGTA
Statistics
Matches: 152, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.02
27 147 0.97
28 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:26399293 original size:54 final size:54
Alignment explanation
Indices: 26399218--26399424 Score: 290
Period size: 54 Copynumber: 3.8 Consensus size: 54
26399208 TTAGTTTACC
*
26399218 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * **
26399272 AAATGACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCTTTTATTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
26399326 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * **
26399380 AAATTATCAAAATACCCCT-GATTTGTGAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCT
26399425 CGACCTGTAA
Statistics
Matches: 134, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.01
54 133 0.99
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:26399411 original size:81 final size:81
Alignment explanation
Indices: 26399218--26399484 Score: 270
Period size: 81 Copynumber: 3.3 Consensus size: 81
26399208 TTAGTTTACC
* * * * *
26399218 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATGCCCTTGGTTTATAAAATGACCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
*
26399282 AATACCCCTAGTTTGTA
65 AATACCCCTGGTTTGTA
* ** * *
26399299 AAATTACTAAAATACCTTTTATTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
26399364 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * ** * ** ***
26399380 AAATTATCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAA
**
26399444 AATA-CCCTCGACTTGTA
65 AATACCCCT-GGTTTGTA
*
26399461 AAATTACCAAAGTACCCCTGATTT
1 AAATTACCAAAATACCCCTGATTT
26399485 ACAGAATTAT
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
80 9 0.06
81 144 0.94
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:26399476 original size:27 final size:26
Alignment explanation
Indices: 26399218--26399484 Score: 219
Period size: 27 Copynumber: 9.9 Consensus size: 26
26399208 TTAGTTTACC
*
26399218 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * * *
26399245 AAATTACCAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
26399272 AAATGACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *** *
26399299 AAATTACTAAAATACCTTTTATTTATA
1 AAATTACCAAAATACC-CCGATTTGTA
*
26399326 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
26399353 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
26399380 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
26399407 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
26399434 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
26399461 AAATTACCAAAGTACCCCTGATTT
1 AAATTACCAAAATACCCC-GATTT
26399485 ACAGAATTAT
Statistics
Matches: 195, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 189 0.97
28 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:26399530 original size:27 final size:27
Alignment explanation
Indices: 26399407--26399532 Score: 71
Period size: 27 Copynumber: 4.7 Consensus size: 27
26399397 CTGATTTGTG
* * **
26399407 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCGAAATACCCTCGATCTACA
** **
26399434 AAATTATTGAAATACCCTCGA-CTTGTA
1 AAATTACCGAAATACCCTCGATC-TACA
*
26399461 AAATTACC-AAAGTACCC-CTGATTTACA
1 AAATTACCGAAA-TACCCTC-GATCTACA
* * **
26399488 GAATTATC-ATTTTACCCTCGATCTACA
1 AAATTACCGA-AATACCCTCGATCTACA
26399515 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
26399533 TGTAGGGTAG
Statistics
Matches: 77, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
26 5 0.06
27 70 0.91
28 2 0.03
ACGTcount: A:0.37, C:0.25, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATCTACA
Found at i:26399549 original size:27 final size:27
Alignment explanation
Indices: 26399516--26399710 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
26399506 CGATCTACAA
*
26399516 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26399543 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
26399570 AATTATAAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
26399597 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26399624 -ATTACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26399650 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
26399677 AATTACTGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26399704 AATTACC
1 AATTACC
26399711 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 21 0.15
27 119 0.85
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26399574 original size:54 final size:54
Alignment explanation
Indices: 26399516--26399694 Score: 234
Period size: 54 Copynumber: 3.3 Consensus size: 54
26399506 CGATCTACAA
26399516 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
*** * * * ** *
26399570 AATTATAAAAATACCCCTATAGGGTAGAATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* *
26399624 -ATTACCGAAATACCCTTGTAGGGTAAAAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* *
26399677 AATTACTGAGATACCCTT
1 AATTACCGAAATACCCTT
26399695 ATGGGGTAAA
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 42 0.41
54 60 0.59
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:26399662 original size:80 final size:81
Alignment explanation
Indices: 26399516--26399692 Score: 239
Period size: 80 Copynumber: 2.2 Consensus size: 81
26399506 CGATCTACAA
* * * * * *
26399516 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATAAAAA
1 AATTACTGAAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAAAAATACAAAAA
26399581 TACCCCTATAGGGTAG
66 TACCCCTATAGGGTAG
* * * **
26399597 AATTATTGAAATACCCCTGTAAGGTAG-ATTACCGAAATACCCTTGTAGGGTAAAAATACCGAAA
1 AATTACTGAAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAAAAATACAAAAA
26399661 TACCCCTATAGGGTAG
66 TACCCCTATAGGGTAG
*
26399677 AATTACTGAGATACCC
1 AATTACTGAAATACCC
26399693 TTATGGGGTA
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 60 0.72
81 23 0.28
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (81 bp):
AATTACTGAAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAAAAATACAAAAA
TACCCCTATAGGGTAG
Found at i:26400166 original size:6 final size:6
Alignment explanation
Indices: 26400157--26400263 Score: 96
Period size: 6 Copynumber: 17.3 Consensus size: 6
26400147 TTGCATTCAC
* * *
26400157 ATTCTG ATTCTG ACTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
26400207 ATTCTG ATTCTG ATTCTG -TTACCTG ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
26400255 AGTTCTG AT
1 A-TTCTG AT
26400264 AATGTTTCTT
Statistics
Matches: 84, Mismatches: 6, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
5 6 0.07
6 64 0.76
7 9 0.11
8 5 0.06
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:26400188 original size:25 final size:25
Alignment explanation
Indices: 26400157--26400249 Score: 159
Period size: 25 Copynumber: 3.7 Consensus size: 25
26400147 TTGCATTCAC
*
26400157 ATTCTGATTCTGACTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* *
26400182 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
26400207 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
26400232 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
26400250 ATTCTAGTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:26429220 original size:40 final size:40
Alignment explanation
Indices: 26428999--26429216 Score: 359
Period size: 40 Copynumber: 5.5 Consensus size: 40
26428989 AAACCAAGTA
* *
26428999 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
26429038 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26429078 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26429118 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26429158 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26429198 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26429217 TTATCATCCG
Statistics
Matches: 169, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.08
40 155 0.92
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26442130 original size:39 final size:40
Alignment explanation
Indices: 26442086--26442195 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 40
26442076 CCTTCGGAGT
* *
26442086 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTAGCACAAATGCCTTCGGGAC
*
26442125 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTAGCACAAATGCCTTCGGGAC
*
26442165 TTAGCCCGGTTATAGTAACTCGCACAAATGC
1 TTAGCCCGGTTATAGTAACTAGCACAAATGC
26442196 TGTAACACCC
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
39 5 0.08
40 61 0.92
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:26442153 original size:40 final size:40
Alignment explanation
Indices: 26442109--26442195 Score: 174
Period size: 40 Copynumber: 2.2 Consensus size: 40
26442099 GCTACTAGCT
26442109 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
26442149 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
26442189 CAAATGC
1 CAAATGC
26442196 TGTAACACCC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26443828 original size:47 final size:47
Alignment explanation
Indices: 26443750--26444387 Score: 1057
Period size: 47 Copynumber: 13.6 Consensus size: 47
26443740 CCCTTCGGGA
* * * * * *
26443750 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26443797 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26443844 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26443891 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26443938 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26443984 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26444031 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26444080 CTTATCACATATATATACACTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26444129 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26444176 CTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26444223 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26444270 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26444317 CTCATCACATATATACACTTTCACATTCATCACATCAGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26444364 CTCATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
26444388 CACAATTATC
Statistics
Matches: 564, Mismatches: 24, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
45 7 0.01
46 46 0.08
47 416 0.74
49 95 0.17
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26446942 original size:39 final size:40
Alignment explanation
Indices: 26446820--26447044 Score: 325
Period size: 40 Copynumber: 5.7 Consensus size: 40
26446810 TTAGGGCTGT
*
26446820 CACAAATGCCTTGGGGACTTAGCCCGGATATAGTAACTCA-
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AG
* *
26446860 CACAAGTGCCTTCGGGACTTAGCCCGGATATAGTAACTCG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAG
*
26446900 CACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAG
* *
26446939 CACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAG
*
26446979 CACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAG
26447018 CACAAATGCCTTCGGGACTTAGCCCGG
1 CACAAATGCCTTCGGGACTTAGCCCGG
26447045 TTATCAATCC
Statistics
Matches: 167, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 69 0.41
40 95 0.57
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAG
Done.