Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 88 of 349
Found at i:26446952 original size:79 final size:79
Alignment explanation
Indices: 26446820--26447044 Score: 373
Period size: 79 Copynumber: 2.8 Consensus size: 79
26446810 TTAGGGCTGT
* * *
26446820 CACAAATGCCTTGGGGACTTAGCCCGG-ATATAGTAACTCA-CACAAGTGCCTTCGGGACTTAGC
1 CACAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTCACT-AGCACAAATGCCTTCGGGACTTAGC
26446883 CCGGATATAGTAACTCG
63 CCGGATATAGTAACTCG
*
26446900 CACAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCA
1 CACAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
26446965 GATATAGTAACTCG
66 GATATAGTAACTCG
26446979 CACAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CACAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
26447044 G
66 G
26447045 TTATCAATCC
Statistics
Matches: 138, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
78 1 0.01
79 120 0.87
80 17 0.12
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (79 bp):
CACAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
GATATAGTAACTCG
Found at i:26448262 original size:54 final size:53
Alignment explanation
Indices: 26448181--26448305 Score: 214
Period size: 54 Copynumber: 2.3 Consensus size: 53
26448171 CTCAAAGCTC
* * *
26448181 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
1 TTTTTCTTTCTTTTTTTTTCTTCTATTCGGCCAAAAACAACATGAGAGCTTTT
26448234 TTTTTCTTTCTTTCTTTTTTCTTCTATTCGGCCAAAAACAACATGAGAGCTTTT
1 TTTTTCTTTCTTT-TTTTTTCTTCTATTCGGCCAAAAACAACATGAGAGCTTTT
26448288 TTTTTCTTTCTTTTTTTT
1 TTTTTCTTTCTTTTTTTT
26448306 CATCATCATT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
53 17 0.25
54 51 0.75
ACGTcount: A:0.17, C:0.20, G:0.09, T:0.54
Consensus pattern (53 bp):
TTTTTCTTTCTTTTTTTTTCTTCTATTCGGCCAAAAACAACATGAGAGCTTTT
Found at i:26451082 original size:184 final size:184
Alignment explanation
Indices: 26450773--26451134 Score: 591
Period size: 184 Copynumber: 2.0 Consensus size: 184
26450763 GGATTTTCAA
* * * *
26450773 AGGCACATGGCCGTATAGTCCACCTGTATGGGAGATCGTGTGGCCCTAAACCTACATAAAGTTTT
1 AGGCACATGGCCGTATAGTCCACCTGTATGGGAGATCGTATGGCCCTAAACCTACACAAAATTTG
* * *
26450838 CCATAATTTACTTGTAAAAGAACACACACCTTTCACCGAAGGTCTTATCGACGTTCCTCACGATC
66 CCACAATTCACTTGCAAAAGAACACACACCTTTCACCGAAGGTCTTATCGACGTTCCTCACGATC
26450903 AAATCTAAT-TCAATTCACCTAAATCAAGTCCTTCAAACGACATTTTCACATCAG
131 AAATCTAATCT-AATTCACCTAAATCAAGTCCTTCAAACGACATTTTCACATCAG
* *
26450957 AGGCACATGGCCGTATGGTCCACCTGTGTGGGAGATCGTATGGCCCTAAACCTACACAAAATTTG
1 AGGCACATGGCCGTATAGTCCACCTGTATGGGAGATCGTATGGCCCTAAACCTACACAAAATTTG
* *
26451022 CCACAATTCAGTTGCAAAAGAACACACACCTTTCACCGAAGGTCTTATCGACTTTCCTCACGATC
66 CCACAATTCACTTGCAAAAGAACACACACCTTTCACCGAAGGTCTTATCGACGTTCCTCACGATC
* *
26451087 AAATCTAATCTGATTCACCTAAATCAGGTCCTTCAAACGACATTTTCA
131 AAATCTAATCTAATTCACCTAAATCAAGTCCTTCAAACGACATTTTCA
26451135 AATGAATTAA
Statistics
Matches: 164, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
184 163 0.99
185 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (184 bp):
AGGCACATGGCCGTATAGTCCACCTGTATGGGAGATCGTATGGCCCTAAACCTACACAAAATTTG
CCACAATTCACTTGCAAAAGAACACACACCTTTCACCGAAGGTCTTATCGACGTTCCTCACGATC
AAATCTAATCTAATTCACCTAAATCAAGTCCTTCAAACGACATTTTCACATCAG
Found at i:26476339 original size:66 final size:66
Alignment explanation
Indices: 26476228--26476360 Score: 203
Period size: 66 Copynumber: 2.0 Consensus size: 66
26476218 GATAAGGTTA
* *
26476228 GATTGATTCTAGATCGTCTAAAAATGACTTCTGATAGACAAAAATCTTATGCAAACCTGAAAAGG
1 GATTGATTCTAGATCATCTAAAAATAACTTCTGATAGACAAAAATCTTATGCAAACCTGAAAAGG
26476293 C
66 C
* * * **
26476294 GATTGATTCTAGATCATTTAAAAATAACTTCTGATAGACAGAAATCTTATGCAGATTTGAAAAGG
1 GATTGATTCTAGATCATCTAAAAATAACTTCTGATAGACAAAAATCTTATGCAAACCTGAAAAGG
26476359 C
66 C
26476360 G
1 G
26476361 TGATATTGAG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (66 bp):
GATTGATTCTAGATCATCTAAAAATAACTTCTGATAGACAAAAATCTTATGCAAACCTGAAAAGG
C
Found at i:26479535 original size:23 final size:24
Alignment explanation
Indices: 26479509--26479555 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
26479499 CGTACCGCAC
*
26479509 ATGTTTCTTTT-TTAATAAA-ATTT
1 ATGTTCCTTTTATTAA-AAATATTT
26479532 ATGTTCCTTTTATTAAAAATATTT
1 ATGTTCCTTTTATTAAAAATATTT
26479556 TCTGGCTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
ATGTTCCTTTTATTAAAAATATTT
Found at i:26490031 original size:6 final size:6
Alignment explanation
Indices: 26490020--26490052 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
26490010 TCCCACCACC
26490020 CCCATA CCCATA CCCATA CCCATA CCCATA CCC
1 CCCATA CCCATA CCCATA CCCATA CCCATA CCC
26490053 TCTCCCACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.55, G:0.00, T:0.15
Consensus pattern (6 bp):
CCCATA
Found at i:26490390 original size:3 final size:3
Alignment explanation
Indices: 26490382--26490495 Score: 60
Period size: 3 Copynumber: 38.0 Consensus size: 3
26490372 TGTACCCTCT
* * *
26490382 TTA TTA TTA TTA GTA TTA TTA TTA TTTA TT- TTA TTTC TTG TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA
* * *
26490427 TTA TT- TTA TTA TT- TTA TT- TTCT TTA CTGA TTA TT- TTT TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA -TTA TTA TTA TTA TTA -TTA
* *
26490471 TTA TCTT TTA CTA TTA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA
26490496 GTCATTTTAG
Statistics
Matches: 87, Mismatches: 12, Indels: 24
0.71 0.10 0.20
Matches are distributed among these distances:
2 12 0.14
3 61 0.70
4 14 0.16
ACGTcount: A:0.24, C:0.04, G:0.03, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26490415 original size:15 final size:14
Alignment explanation
Indices: 26490381--26490491 Score: 52
Period size: 16 Copynumber: 7.6 Consensus size: 14
26490371 TTGTACCCTC
*
26490381 TTTATTATTATTAGT
1 TTTATTATTTTTA-T
*
26490396 ATTATTATTATTTAT
1 TTTATTATT-TTTAT
* *
26490411 TTTA-T-TTCTTGT
1 TTTATTATTTTTAT
26490423 TTTATTATTTTATTAT
1 TTTATTA-TTT-TTAT
26490439 TTTATT-TTCTTTACT
1 TTTATTATT-TTTA-T
*
26490454 GATTATT-TTTTTA-
1 -TTTATTATTTTTAT
26490467 TTTATTATCTTTTACT
1 TTTATTAT-TTTTA-T
*
26490483 ATTATTATT
1 TTTATTATT
26490492 ATTAGTCATT
Statistics
Matches: 74, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
12 12 0.16
13 4 0.05
14 11 0.15
15 21 0.28
16 26 0.35
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTATTATTTTTAT
Found at i:26490470 original size:28 final size:29
Alignment explanation
Indices: 26490381--26490495 Score: 105
Period size: 29 Copynumber: 4.0 Consensus size: 29
26490371 TTGTACCCTC
* *
26490381 TTTATTAT-TATTAGTATTATTATTATTTAT
1 TTTATTATCTTTTACTATTATT-TTA-TTAT
*
26490411 TTTATT-TCTTGTT-TTATTATTTTATTAT
1 TTTATTATCTT-TTACTATTATTTTATTAT
* *
26490439 TTTATTTTC-TTTACTGATTATTTTTTTA-
1 TTTATTATCTTTTACT-ATTATTTTATTAT
26490467 TTTATTATCTTTTACTATTATTATTATTA
1 TTTATTATCTTTTACTATTATT-TTATTA
26490496 GTCATTTTAG
Statistics
Matches: 72, Mismatches: 6, Indels: 15
0.77 0.06 0.16
Matches are distributed among these distances:
27 2 0.03
28 26 0.36
29 28 0.39
30 14 0.19
31 2 0.03
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.70
Consensus pattern (29 bp):
TTTATTATCTTTTACTATTATTTTATTAT
Found at i:26500072 original size:22 final size:24
Alignment explanation
Indices: 26500025--26500073 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
26500015 TATTTGAAAT
*
26500025 ATTTTATAATATATGTTTTTTAAA
1 ATTTTATAATATATGATTTTTAAA
*
26500049 ATTTTA-AATATAT-ATTTTTGAA
1 ATTTTATAATATATGATTTTTAAA
26500071 ATT
1 ATT
26500074 AATTTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 10 0.43
23 7 0.30
24 6 0.26
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
ATTTTATAATATATGATTTTTAAA
Found at i:26500247 original size:13 final size:13
Alignment explanation
Indices: 26500214--26500243 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
26500204 TTTAAATATT
26500214 TAAAATTTTTAAA
1 TAAAATTTTTAAA
26500227 TAAAATTTTT-AA
1 TAAAATTTTTAAA
26500239 TAAAA
1 TAAAA
26500244 ATTTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAAATTTTTAAA
Found at i:26500346 original size:12 final size:13
Alignment explanation
Indices: 26500331--26500361 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26500321 TAAATTTTTT
26500331 AAATTTT-TTTAA
1 AAATTTTATTTAA
26500343 AAATTTTATTTAA
1 AAATTTTATTTAA
26500356 AAATTT
1 AAATTT
26500362 CAATGTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AAATTTTATTTAA
Found at i:26500403 original size:20 final size:21
Alignment explanation
Indices: 26500367--26500560 Score: 110
Period size: 22 Copynumber: 9.5 Consensus size: 21
26500357 AATTTCAATG
26500367 TTTAAATATTATTAAAAAATATA
1 TTTAAA-ATT-TTAAAAAATATA
*
26500390 TTTAATA-TTTAAAAAATAATA
1 TTTAAAATTTTAAAAAAT-ATA
26500411 TTTAAAATTTTAAAAAATA-A
1 TTTAAAATTTTAAAAAATATA
* * *
26500431 TTTCAAA----AATATA-ATA
1 TTTAAAATTTTAAAAAATATA
*
26500447 TTCAAAATTTTAAAAAATA-A
1 TTTAAAATTTTAAAAAATATA
* *
26500467 TTT--CA----AAAATATATA
1 TTTAAAATTTTAAAAAATATA
*
26500482 TTTAAAATTTTAGAAAATAATA
1 TTTAAAATTTTAAAAAAT-ATA
26500504 TTTAAAATTTTAAAAATTATATA
1 TTTAAAATTTTAAAAA--ATATA
* * *
26500527 TTATAAAACATTTAAAATATACA
1 TT-TAAAA-TTTTAAAAAATATA
*
26500550 TTTTAAATTTT
1 TTTAAAATTTT
26500561 TTAAAATGAA
Statistics
Matches: 130, Mismatches: 21, Indels: 42
0.67 0.11 0.22
Matches are distributed among these distances:
14 7 0.05
15 5 0.04
16 10 0.08
17 1 0.01
18 1 0.01
20 23 0.18
21 20 0.15
22 33 0.25
23 16 0.12
24 7 0.05
25 7 0.05
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (21 bp):
TTTAAAATTTTAAAAAATATA
Found at i:26500438 original size:21 final size:20
Alignment explanation
Indices: 26500378--26500474 Score: 80
Period size: 21 Copynumber: 5.0 Consensus size: 20
26500368 TTAAATATTA
*
26500378 TTAAAAAATATATTT-AATAT
1 TTAAAAAATA-ATTTCAAAAT
*
26500398 TTAAAAAATAATATTTAAAATT
1 TTAAAAAATAAT-TTCAAAA-T
26500420 TTAAAAAATAATTTCAAAA-
1 TTAAAAAATAATTTCAAAAT
* *
26500439 --ATATAAT-A-TTCAAAATT
1 TTAAAAAATAATTTCAAAA-T
26500456 TTAAAAAATAATTTCAAAA
1 TTAAAAAATAATTTCAAAA
26500475 ATATATATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
15 7 0.11
16 1 0.02
17 5 0.08
19 7 0.11
20 13 0.21
21 16 0.26
22 13 0.21
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAAAAAATAATTTCAAAAT
Found at i:26500440 original size:12 final size:12
Alignment explanation
Indices: 26500423--26500477 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
26500413 TAAAATTTTA
26500423 AAAAATAATTTC
1 AAAAATAATTTC
26500435 AAAAATATAATATTC
1 -AAAA-ATAAT-TTC
*
26500450 -AAAAT--TTTA
1 AAAAATAATTTC
26500459 AAAAATAATTTC
1 AAAAATAATTTC
26500471 AAAAATA
1 AAAAATA
26500478 TATATTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
9 2 0.06
10 6 0.17
12 12 0.34
13 7 0.20
14 5 0.14
15 3 0.09
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAAATAATTTC
Found at i:26500452 original size:15 final size:13
Alignment explanation
Indices: 26500416--26500488 Score: 59
Period size: 13 Copynumber: 5.8 Consensus size: 13
26500406 TAATATTTAA
*
26500416 AATTTTAAAAAAT
1 AATTTCAAAAAAT
26500429 AATTTCAAAAATAT
1 AATTTCAAAAA-AT
26500443 AATATTC--AAAAT
1 AAT-TTCAAAAAAT
26500455 --TTT-AAAAAAT
1 AATTTCAAAAAAT
26500465 AATTTCAAAAATAT
1 AATTTCAAAAA-AT
26500479 ATATTT-AAAA
1 A-ATTTCAAAA
26500489 TTTTAGAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 17
0.74 0.01 0.25
Matches are distributed among these distances:
9 2 0.04
10 6 0.12
12 5 0.10
13 18 0.36
14 12 0.24
15 7 0.14
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (13 bp):
AATTTCAAAAAAT
Found at i:26500511 original size:35 final size:36
Alignment explanation
Indices: 26500396--26500502 Score: 175
Period size: 36 Copynumber: 3.1 Consensus size: 36
26500386 TATATTTAAT
26500396 ATTT-AAAAA-ATAATATTTAAAATTTTAAAAAATA
1 ATTTCAAAAATATAATATTTAAAATTTTAAAAAATA
*
26500430 ATTTCAAAAATATAATATTCAAAATTTTAAAAAATA
1 ATTTCAAAAATATAATATTTAAAATTTTAAAAAATA
*
26500466 ATTTCAAAAATAT-ATATTTAAAATTTTAGAAAATA
1 ATTTCAAAAATATAATATTTAAAATTTTAAAAAATA
26500501 AT
1 AT
26500503 ATTTAAAATT
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
34 4 0.06
35 27 0.40
36 37 0.54
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (36 bp):
ATTTCAAAAATATAATATTTAAAATTTTAAAAAATA
Found at i:26500603 original size:22 final size:23
Alignment explanation
Indices: 26500562--26500606 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
26500552 TTAAATTTTT
26500562 TAAAATGAATAACACAAAATAAA
1 TAAAATGAATAACACAAAATAAA
26500585 TAAAAT-AATTAA-ACAAAATAAA
1 TAAAATGAA-TAACACAAAATAAA
26500607 ACAAAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (23 bp):
TAAAATGAATAACACAAAATAAA
Found at i:26500652 original size:37 final size:39
Alignment explanation
Indices: 26500611--26500684 Score: 125
Period size: 37 Copynumber: 1.9 Consensus size: 39
26500601 AATAAAACAA
26500611 AAAGAAAAAGAAAAAACTTAAAAA-AAG-AAAAAAAATT
1 AAAGAAAAAGAAAAAACTTAAAAAGAAGTAAAAAAAATT
*
26500648 AAAGAAAAAGAAAAAAGTTAAAAAGAAGTAAAAAAAA
1 AAAGAAAAAGAAAAAACTTAAAAAGAAGTAAAAAAAA
26500685 ATAGAATTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 23 0.68
38 3 0.09
39 8 0.24
ACGTcount: A:0.78, C:0.01, G:0.11, T:0.09
Consensus pattern (39 bp):
AAAGAAAAAGAAAAAACTTAAAAAGAAGTAAAAAAAATT
Found at i:26500663 original size:18 final size:18
Alignment explanation
Indices: 26500615--26500682 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
26500605 AAACAAAAAG
26500615 AAAAAGAAAAAACTT-AA
1 AAAAAGAAAAAACTTAAA
*
26500632 AAAAAGAAAAAAAATTAAA
1 AAAAAG-AAAAAACTTAAA
*
26500651 GAAAAAGAAAAAAGTTAAA
1 -AAAAAGAAAAAACTTAAA
*
26500670 AAGAAGTAAAAAA
1 AAAAAG-AAAAAA
26500683 AAATAGAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
17 6 0.14
18 13 0.30
19 19 0.43
20 6 0.14
ACGTcount: A:0.78, C:0.01, G:0.10, T:0.10
Consensus pattern (18 bp):
AAAAAGAAAAAACTTAAA
Found at i:26500670 original size:29 final size:27
Alignment explanation
Indices: 26500631--26500685 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 27
26500621 AAAAAACTTA
* *
26500631 AAAAAAGAAAAAAAATTAAAGAAAAAG
1 AAAAAAGAAAAAAAAGTAAAAAAAAAG
*
26500658 AAAAAAGTTAAAAAGAAGTAAAAAAAAA
1 AAAAAAG--AAAAAAAAGTAAAAAAAAA
26500686 TAGAATTAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 7 0.30
29 16 0.70
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (27 bp):
AAAAAAGAAAAAAAAGTAAAAAAAAAG
Found at i:26503979 original size:16 final size:15
Alignment explanation
Indices: 26503960--26504006 Score: 60
Period size: 14 Copynumber: 3.1 Consensus size: 15
26503950 TAAGTAAGTG
*
26503960 ATATTTTATTTTAATT
1 ATATTTTATTAT-ATT
26503976 ATATTATTATTATATT
1 ATATT-TTATTATATT
26503992 ATA-TTTATTATATT
1 ATATTTTATTATATT
26504006 A
1 A
26504007 GTTATAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 11 0.38
15 1 0.03
16 11 0.38
17 6 0.21
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATATTTTATTATATT
Found at i:26503987 original size:11 final size:10
Alignment explanation
Indices: 26503973--26504006 Score: 52
Period size: 9 Copynumber: 3.4 Consensus size: 10
26503963 TTTTATTTTA
26503973 ATTATATTATT
1 ATTATATTA-T
26503984 ATTATATTAT
1 ATTATATTAT
26503994 ATT-TATTAT
1 ATTATATTAT
26504003 ATTA
1 ATTA
26504007 GTTATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 4 0.18
11 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
ATTATATTAT
Found at i:26504005 original size:5 final size:5
Alignment explanation
Indices: 26503973--26504006 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
26503963 TTTTATTTTA
26503973 ATTAT ATTATT ATTAT ATTAT ATT-T ATTAT ATTA
1 ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT ATTA
26504007 GTTATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 18 0.67
6 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
ATTAT
Found at i:26506720 original size:11 final size:11
Alignment explanation
Indices: 26506704--26506733 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
26506694 TGTGGACTAC
26506704 CCGTGTGGAGG
1 CCGTGTGGAGG
26506715 CCGTGTGGAGG
1 CCGTGTGGAGG
26506726 CCGTGTGG
1 CCGTGTGG
26506734 CGATACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.07, C:0.20, G:0.53, T:0.20
Consensus pattern (11 bp):
CCGTGTGGAGG
Found at i:26513124 original size:17 final size:16
Alignment explanation
Indices: 26513102--26513142 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
26513092 ACGATTTTCA
26513102 TTTATTTATATTAAATT
1 TTTATTT-TATTAAATT
26513119 TTTA-TTTATTAAATT
1 TTTATTTTATTAAATT
26513134 TTTATTTTA
1 TTTATTTTA
26513143 AATAGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.57
16 6 0.26
17 4 0.17
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTTTATTAAATT
Found at i:26514320 original size:151 final size:151
Alignment explanation
Indices: 26514139--26514443 Score: 592
Period size: 151 Copynumber: 2.0 Consensus size: 151
26514129 CTCAAAGTGA
26514139 TAAAAACTTTTATCGATGATCAAATTTATTCTCCATGATTTCCAAGATCTTAGAAGGCAAGATGC
1 TAAAAACTTTTATCGATGATCAAATTTATTCTCCATGATTTCCAAGATCTTAGAAGGCAAGATGC
*
26514204 AAAGTTTTTGCAGGAAGTTTCTTTTATTTAATGTTTCATATTTGATTATTTTTAGATAATTTATG
66 AAAGTTTTTGCAGGAAGTTTCTTTTATTTAAAGTTTCATATTTGATTATTTTTAGATAATTTATG
26514269 ATCAATTATAATTATTTTGAT
131 ATCAATTATAATTATTTTGAT
*
26514290 TAAAACCTTTTATCGATGATCAAATTTATTCTCCATGATTTCCAAGATCTTAGAAGGCAAGATGC
1 TAAAAACTTTTATCGATGATCAAATTTATTCTCCATGATTTCCAAGATCTTAGAAGGCAAGATGC
26514355 AAAGTTTTTGCAGGAAGTTTCTTTTATTTAAAGTTTCATATTTGATTATTTTTAGATAATTTATG
66 AAAGTTTTTGCAGGAAGTTTCTTTTATTTAAAGTTTCATATTTGATTATTTTTAGATAATTTATG
26514420 ATCAATTATAATTATTTTGAT
131 ATCAATTATAATTATTTTGAT
26514441 TAA
1 TAA
26514444 CTTTTTTTTT
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 152 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (151 bp):
TAAAAACTTTTATCGATGATCAAATTTATTCTCCATGATTTCCAAGATCTTAGAAGGCAAGATGC
AAAGTTTTTGCAGGAAGTTTCTTTTATTTAAAGTTTCATATTTGATTATTTTTAGATAATTTATG
ATCAATTATAATTATTTTGAT
Found at i:26515960 original size:20 final size:22
Alignment explanation
Indices: 26515918--26515960 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
26515908 AAAATTAATT
26515918 AAGAATCCATAGACATTCATTA
1 AAGAATCCATAGACATTCATTA
* *
26515940 AAGAA-CCA-AGAGATTCTTTA
1 AAGAATCCATAGACATTCATTA
26515960 A
1 A
26515961 TTTAAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 3 0.16
22 5 0.26
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.26
Consensus pattern (22 bp):
AAGAATCCATAGACATTCATTA
Found at i:26520196 original size:40 final size:40
Alignment explanation
Indices: 26520150--26520225 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
26520140 GCACACCATG
*
26520150 TGGGGATAAAATCGACCCACCCATCCCTACACACCAAATA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCAAATA
* *
26520190 TGGGGATAATATCGACCCATCCAACCCTACACACCA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCA
26520226 TAAGGTACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.36, C:0.36, G:0.13, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAACCCTACACACCAAATA
Found at i:26520720 original size:32 final size:32
Alignment explanation
Indices: 26520684--26520757 Score: 148
Period size: 32 Copynumber: 2.3 Consensus size: 32
26520674 CCGTGTAGCC
26520684 CACACGGCCTAATTGGTCGAGCCCGTGTCTCG
1 CACACGGCCTAATTGGTCGAGCCCGTGTCTCG
26520716 CACACGGCCTAATTGGTCGAGCCCGTGTCTCG
1 CACACGGCCTAATTGGTCGAGCCCGTGTCTCG
26520748 CACACGGCCT
1 CACACGGCCT
26520758 CGTCGGTCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.16, C:0.36, G:0.27, T:0.20
Consensus pattern (32 bp):
CACACGGCCTAATTGGTCGAGCCCGTGTCTCG
Found at i:26527199 original size:30 final size:26
Alignment explanation
Indices: 26527139--26527191 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26527129 ACAGTGAGTC
*
26527139 ACTTATTAGACCGAAATCAATTTTTA
1 ACTTATGAGACCGAAATCAATTTTTA
26527165 ACTTATGAGACCGAAATCAATTTTTA
1 ACTTATGAGACCGAAATCAATTTTTA
26527191 A
1 A
26527192 GTTACTTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (26 bp):
ACTTATGAGACCGAAATCAATTTTTA
Found at i:26528566 original size:26 final size:28
Alignment explanation
Indices: 26528514--26528568 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
26528504 AATTATATTT
* *
26528514 AAAATAAGATATATTATTTAATTTTTAA
1 AAAATAAGATATATTAATTAATATTTAA
*
26528542 AAAATAATATATA-TAATTAA-ATTTAA
1 AAAATAAGATATATTAATTAATATTTAA
26528568 A
1 A
26528569 TATATTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.25
27 6 0.25
28 12 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (28 bp):
AAAATAAGATATATTAATTAATATTTAA
Found at i:26528570 original size:20 final size:20
Alignment explanation
Indices: 26528547--26528595 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26528537 TTTAAAAAAT
26528547 AATATATATAA-TTAAATTTA
1 AATATAT-TAATTTAAATTTA
*
26528567 AATATATTAATTTAATTTTA
1 AATATATTAATTTAAATTTA
*
26528587 AATTTATTA
1 AATATATTA
26528596 TTCAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATATATTAATTTAAATTTA
Found at i:26528586 original size:46 final size:41
Alignment explanation
Indices: 26528491--26528588 Score: 108
Period size: 46 Copynumber: 2.2 Consensus size: 41
26528481 TCAATCACAG
*
26528491 TAATTCTAAAAAAAATTATATTTAAAATAAGATATATTATT
1 TAATTTTAAAAAAAATTATATTTAAAATAAGATATATTATT
*
26528532 TAATTTTTAAAAAATAATATATATAATTAAATTTAA-ATATATTAATT
1 TAA-TTTTAAAAAA-AAT-TATAT--TTAAA-ATAAGATATATT-ATT
26528579 TAATTTTAAA
1 TAATTTTAAA
26528589 TTTATTATTC
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
41 3 0.06
42 9 0.19
43 3 0.06
44 5 0.10
46 19 0.40
47 9 0.19
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (41 bp):
TAATTTTAAAAAAAATTATATTTAAAATAAGATATATTATT
Found at i:26528602 original size:19 final size:20
Alignment explanation
Indices: 26528547--26528602 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
26528537 TTTAAAAAAT
*
26528547 AATATATATAATT-AAATTTA
1 AATATAT-TAATTCAATTTTA
*
26528567 AATATATTAATTTAATTTTA
1 AATATATTAATTCAATTTTA
*
26528587 AATTTATT-ATTCAATT
1 AATATATTAATTCAATT
26528603 AAAGTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
AATATATTAATTCAATTTTA
Found at i:26531782 original size:13 final size:13
Alignment explanation
Indices: 26531730--26531782 Score: 70
Period size: 13 Copynumber: 4.1 Consensus size: 13
26531720 AGTTTGGCAA
26531730 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
26531743 TGCTGTAGAAAAG
1 TGCTTTTGAAAAG
**
26531756 TGCTTTTGGGAAG
1 TGCTTTTGAAAAG
26531769 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
26531782 T
1 T
26531783 TTGGTTTAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:26532789 original size:20 final size:20
Alignment explanation
Indices: 26532764--26532806 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
26532754 ATTTAATGTT
26532764 TATCTACAAGATAAACATTC
1 TATCTACAAGATAAACATTC
26532784 TATCTACAAGATAAACATTC
1 TATCTACAAGATAAACATTC
26532804 TAT
1 TAT
26532807 TAATTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.33
Consensus pattern (20 bp):
TATCTACAAGATAAACATTC
Found at i:26534344 original size:46 final size:46
Alignment explanation
Indices: 26534291--26534390 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 46
26534281 CTTAAGGGTG
* *
26534291 TTACAGAATACGCCACACAGTCATCA-CAGAATACTCCACAAAGGCT
1 TTACAGAATACACCACACAGGCATCACCA-AATACTCCACAAAGGCT
* * *
26534337 TTACAGAATACACCACACAGGCTTTACCAAATACTCCACCAAGGCT
1 TTACAGAATACACCACACAGGCATCACCAAATACTCCACAAAGGCT
*
26534383 TTATAGAA
1 TTACAGAA
26534391 AATTACGTGT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 45 0.96
47 2 0.04
ACGTcount: A:0.39, C:0.29, G:0.12, T:0.20
Consensus pattern (46 bp):
TTACAGAATACACCACACAGGCATCACCAAATACTCCACAAAGGCT
Found at i:26534359 original size:23 final size:23
Alignment explanation
Indices: 26534291--26534390 Score: 105
Period size: 23 Copynumber: 4.3 Consensus size: 23
26534281 CTTAAGGGTG
* * *
26534291 TTACAGAATACGCCACACAGTCA
1 TTACAGAATACTCCACACAGGCT
* *
26534314 TCACAGAATACTCCACAAAGGCT
1 TTACAGAATACTCCACACAGGCT
*
26534337 TTACAGAATACACCACACAGGCT
1 TTACAGAATACTCCACACAGGCT
26534360 TTACCA-AATACTCCAC-CAAGGCT
1 TTA-CAGAATACTCCACAC-AGGCT
*
26534383 TTATAGAA
1 TTACAGAA
26534391 AATTACGTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
22 2 0.03
23 60 0.94
24 2 0.03
ACGTcount: A:0.39, C:0.29, G:0.12, T:0.20
Consensus pattern (23 bp):
TTACAGAATACTCCACACAGGCT
Found at i:26536432 original size:21 final size:21
Alignment explanation
Indices: 26536382--26536432 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
26536372 ATTACTCCAA
* *
26536382 AGAAGCCGATTGACCTATCTC
1 AGAAGCCGGTTGACCCATCTC
*
26536403 AGAAGCCGGTTGACCCATCTT
1 AGAAGCCGGTTGACCCATCTC
26536424 AGAAGCCGG
1 AGAAGCCGG
26536433 ATTCATCATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.20
Consensus pattern (21 bp):
AGAAGCCGGTTGACCCATCTC
Found at i:26543936 original size:38 final size:38
Alignment explanation
Indices: 26543880--26543980 Score: 123
Period size: 41 Copynumber: 2.6 Consensus size: 38
26543870 TTATCAATTG
* * *
26543880 CATGTTTAGCATGCCTACTATTACTTTTGAACCAG-ATA
1 CATGTTAAGCATGTCTACTATTACTATTGAA-CAGAATA
*
26543918 CATGTTAAGCATGTCTACTACTACTACTATTGAACTGAATA
1 CATGTTAAGCATGTCTACTA-T--TACTATTGAACAGAATA
26543959 CATGTTAAGCATGTCTACTATT
1 CATGTTAAGCATGTCTACTATT
26543981 TTTACATGTA
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
38 19 0.35
39 1 0.02
40 3 0.05
41 32 0.58
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.37
Consensus pattern (38 bp):
CATGTTAAGCATGTCTACTATTACTATTGAACAGAATA
Found at i:26543951 original size:41 final size:41
Alignment explanation
Indices: 26543894--26543978 Score: 127
Period size: 41 Copynumber: 2.1 Consensus size: 41
26543884 TTTAGCATGC
* *
26543894 CTACTATTACTTTTGAACCAG-ATACATGTTAAGCATGTCTA
1 CTACTACTACTATTGAA-CAGAATACATGTTAAGCATGTCTA
*
26543935 CTACTACTACTATTGAACTGAATACATGTTAAGCATGTCTA
1 CTACTACTACTATTGAACAGAATACATGTTAAGCATGTCTA
26543976 CTA
1 CTA
26543979 TTTTTACATG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 2 0.05
41 38 0.95
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (41 bp):
CTACTACTACTATTGAACAGAATACATGTTAAGCATGTCTA
Found at i:26545653 original size:40 final size:40
Alignment explanation
Indices: 26545595--26545674 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
26545585 GTTCATACTA
*
26545595 TGACAAGAACCATGTGAGCGAGAGCTAGAAAGCGTTAGGT
1 TGACAAGAACCATATGAGCGAGAGCTAGAAAGCGTTAGGT
*
26545635 TGACAAGGACCATATGAGCGAGAGCTAGAAAGCGTTAGGT
1 TGACAAGAACCATATGAGCGAGAGCTAGAAAGCGTTAGGT
26545675 ACTTTTTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.35, C:0.15, G:0.33, T:0.17
Consensus pattern (40 bp):
TGACAAGAACCATATGAGCGAGAGCTAGAAAGCGTTAGGT
Found at i:26548609 original size:35 final size:35
Alignment explanation
Indices: 26548570--26548659 Score: 119
Period size: 35 Copynumber: 2.6 Consensus size: 35
26548560 GATATTTTGT
*
26548570 TTCGCATGTTGAGCATGAT-ATTATTCTAATTATGA
1 TTCGCATGTTAAGCATG-TCATTATTCTAATTATGA
* *
26548605 TTCGCATGTTAAGCATGTCATTATTCTGATTCTGA
1 TTCGCATGTTAAGCATGTCATTATTCTAATTATGA
* *
26548640 TTTGCATGTTAAACATGTCA
1 TTCGCATGTTAAGCATGTCA
26548660 CTGTGATAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
34 1 0.02
35 48 0.98
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (35 bp):
TTCGCATGTTAAGCATGTCATTATTCTAATTATGA
Found at i:26548869 original size:30 final size:28
Alignment explanation
Indices: 26548835--26548899 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
26548825 ATCTAGTAGT
*
26548835 ATATTTACATTATCTGGTGGCTCAACCACA
1 ATATTTA-ATT-TCTGGTAGCTCAACCACA
* * *
26548865 ATATTTAGTTTCTGGTAGCTCGACTACA
1 ATATTTAATTTCTGGTAGCTCAACCACA
26548893 ATATTTA
1 ATATTTA
26548900 GTGGCTTGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 22 0.71
29 2 0.06
30 7 0.23
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (28 bp):
ATATTTAATTTCTGGTAGCTCAACCACA
Found at i:26548885 original size:28 final size:28
Alignment explanation
Indices: 26548847--26548901 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
26548837 ATTTACATTA
*
26548847 TCTGGTGGCTCAACCACAATATTTAGTT
1 TCTGGTAGCTCAACCACAATATTTAGTT
* *
26548875 TCTGGTAGCTCGACTACAATATTTAGT
1 TCTGGTAGCTCAACCACAATATTTAGT
26548902 GGCTTGTCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (28 bp):
TCTGGTAGCTCAACCACAATATTTAGTT
Found at i:26550034 original size:16 final size:16
Alignment explanation
Indices: 26549997--26550048 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
26549987 AATATAGATT
*
26549997 ACTATAGATTGTG--A
1 ACTATAGATTCTGAAA
*
26550011 ACTCTAGATTCTGAAA
1 ACTATAGATTCTGAAA
26550027 ACTATAGATTCT-AAA
1 ACTATAGATTCTGAAA
26550042 ACTATAG
1 ACTATAG
26550049 TGAAAACTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 11 0.33
15 10 0.30
16 12 0.36
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (16 bp):
ACTATAGATTCTGAAA
Found at i:26550070 original size:16 final size:17
Alignment explanation
Indices: 26550049--26550081 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26550039 AAAACTATAG
*
26550049 TGAAAAC-TTTTAAAAT
1 TGAAAACATTCTAAAAT
26550065 TGAAAACATTCTAAAAT
1 TGAAAACATTCTAAAAT
26550082 AATAATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33
Consensus pattern (17 bp):
TGAAAACATTCTAAAAT
Found at i:26556144 original size:35 final size:35
Alignment explanation
Indices: 26556105--26556204 Score: 182
Period size: 35 Copynumber: 2.9 Consensus size: 35
26556095 ATTGACATTC
26556105 TGATTCGCATGTTGAGCATGCCATTATTCTGATTA
1 TGATTCGCATGTTGAGCATGCCATTATTCTGATTA
*
26556140 TGATTCGCAGGTTGAGCATGCCATTATTCTGATTA
1 TGATTCGCATGTTGAGCATGCCATTATTCTGATTA
*
26556175 TGATTCGCATGTTAAGCATGCCATTATTCT
1 TGATTCGCATGTTGAGCATGCCATTATTCT
26556205 AATTCTAATT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 62 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (35 bp):
TGATTCGCATGTTGAGCATGCCATTATTCTGATTA
Found at i:26559660 original size:48 final size:49
Alignment explanation
Indices: 26559584--26559713 Score: 147
Period size: 48 Copynumber: 2.7 Consensus size: 49
26559574 ACATCAAAGT
** * *
26559584 CGATGCCATGTCTTAGATAGGTCTTACACTGACTTTCATATATCGATGC
1 CGATGCCATGTCCCAAATAGGTCTTACACTGACTCTCATATATCGATGC
* * * * *
26559633 CGATGCCGTGTCCC-AGTAGGTCTTACACT-AGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAAATAGGTCTTACACTGA-CTCTCATATATCGATGC
*
26559681 CGATGCCATGTCCCAAACAGGTCTTACACTGAC
1 CGATGCCATGTCCCAAATAGGTCTTACACTGAC
26559714 ACGCAACAAG
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
47 1 0.02
48 39 0.59
49 25 0.38
50 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (49 bp):
CGATGCCATGTCCCAAATAGGTCTTACACTGACTCTCATATATCGATGC
Found at i:26559839 original size:46 final size:46
Alignment explanation
Indices: 26559731--26559943 Score: 282
Period size: 46 Copynumber: 4.6 Consensus size: 46
26559721 AAGCTGACGC
* * * * ** * *
26559731 CATGTCTCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTTTATGCCGATG
26559779 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTTATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTTATGCCGATG
* *
26559825 CATGTCCGAGACATGTCTTACACTAGCTCTCATCTTTATGCCTATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTTATGCCGATG
* *
26559871 CATATCCCAGACATGTCTTACACTAGCTCTCGTCTTTATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTTATGCCGATG
* *
26559917 CATGTGCCAGACATGTCTTACTCTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
26559944 ATACATATCA
Statistics
Matches: 148, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 121 0.82
47 2 0.01
48 25 0.17
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.32
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTTATGCCGATG
Found at i:26562779 original size:20 final size:20
Alignment explanation
Indices: 26562754--26562795 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26562744 GACCAAATTG
26562754 AAAACATGGAAAATTTTTCA
1 AAAACATGGAAAATTTTTCA
** *
26562774 AAAACATTTAAATTTTTTCA
1 AAAACATGGAAAATTTTTCA
26562794 AA
1 AA
26562796 GCTGTAGGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAACATGGAAAATTTTTCA
Found at i:26565733 original size:91 final size:91
Alignment explanation
Indices: 26565578--26565760 Score: 348
Period size: 91 Copynumber: 2.0 Consensus size: 91
26565568 TTGGAGAGTA
* *
26565578 ATCAGCGTGAGAGTGGAGGAGGATACTCCGGTGGTGGTAGAGGTTCATTAGTCCATCAGTCCTGC
1 ATCAGCGTGAGAGTGGAGGAGGATACTCCGGTGGTGGTAAAGGTTCATTAGTCCATAAGTCCTGC
26565643 ACCAAAAGAATATTATATCTGGTGGT
66 ACCAAAAGAATATTATATCTGGTGGT
26565669 ATCAGCGTGAGAGTGGAGGAGGATACTCCGGTGGTGGTAAAGGTTCATTAGTCCATAAGTCCTGC
1 ATCAGCGTGAGAGTGGAGGAGGATACTCCGGTGGTGGTAAAGGTTCATTAGTCCATAAGTCCTGC
26565734 ACCAAAAGAATATTATATCTGGTGGT
66 ACCAAAAGAATATTATATCTGGTGGT
26565760 A
1 A
26565761 GCTATGGTCG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (91 bp):
ATCAGCGTGAGAGTGGAGGAGGATACTCCGGTGGTGGTAAAGGTTCATTAGTCCATAAGTCCTGC
ACCAAAAGAATATTATATCTGGTGGT
Found at i:26565988 original size:22 final size:23
Alignment explanation
Indices: 26565963--26566014 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
26565953 TATAAAACCT
26565963 AATAAAAA-TACG-CTTAAAGAAA
1 AATAAAAAGTA-GTCTTAAAGAAA
* *
26565985 AATAAAAAGTAGTCTTAAAGTAG
1 AATAAAAAGTAGTCTTAAAGAAA
26566008 AATAAAA
1 AATAAAA
26566015 GTGAAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:26569490 original size:47 final size:47
Alignment explanation
Indices: 26569420--26569544 Score: 214
Period size: 47 Copynumber: 2.7 Consensus size: 47
26569410 TGGATGCGAA
*
26569420 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGG
*
26569467 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGG
* *
26569514 CATCCGAAGTCGTTGAGTTGAGTCCAAGTTC
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC
26569545 ACTTATGGAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (47 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGG
Found at i:26574958 original size:31 final size:31
Alignment explanation
Indices: 26574923--26574983 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
26574913 TTGTAGCCAA
* * *
26574923 AGCTATCACTATTCACTGATCAGGTAGCCGG
1 AGCTACCACTATTCACTAATCAAGTAGCCGG
* *
26574954 AGCTACCATTTTTCACTAATCAAGTAGCCG
1 AGCTACCACTATTCACTAATCAAGTAGCCG
26574984 ATGATCAGGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
AGCTACCACTATTCACTAATCAAGTAGCCGG
Found at i:26575006 original size:46 final size:46
Alignment explanation
Indices: 26574939--26575030 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
26574929 CACTATTCAC
* *
26574939 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
26574985 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
26575031 AGCTATCACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:26575063 original size:44 final size:46
Alignment explanation
Indices: 26575006--26575145 Score: 149
Period size: 50 Copynumber: 2.9 Consensus size: 46
26574996 CCGAAGCTAC
* *
26575006 CACTTTTCATTGATC-AG-GTAGCCGAAGCTATCACTTATCACTTT
1 CACTTATCCTTGATCAAGTGTAGCCGAAGCTATCACTTATCACTTT
*
26575050 CACTTATCCTTGATCAAATAAGTGTAGCCGAAGTTATCACTTATCACTTT
1 CACTTATCCTTGATC----AAGTGTAGCCGAAGCTATCACTTATCACTTT
* *
26575100 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCA
1 CACTTATCCTTGATC----AAGTGTAGCCGAAGCTATCACTTATCA
26575146 GATAAGTGTA
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
44 13 0.16
49 2 0.02
50 68 0.82
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCCTTGATCAAGTGTAGCCGAAGCTATCACTTATCACTTT
Found at i:26575098 original size:50 final size:50
Alignment explanation
Indices: 26575023--26575145 Score: 210
Period size: 50 Copynumber: 2.5 Consensus size: 50
26575013 CATTGATCAG
26575023 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
* * * *
26575073 GTAGCCGAAGTTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
26575123 GTAGCCGAAGCTATCACTTATCA
1 GTAGCCGAAGCTATCACTTATCA
26575146 GATAAGTGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 68 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
Found at i:26575148 original size:30 final size:30
Alignment explanation
Indices: 26575112--26575175 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
26575102 TTTGTCCTTG
26575112 ATCAGATAAGTGTAGCCGAAGCTATCACTT
1 ATCAGATAAGTGTAGCCGAAGCTATCACTT
26575142 ATCAGATAAGTGTAGCCGAAGCTATCACTT
1 ATCAGATAAGTGTAGCCGAAGCTATCACTT
26575172 ATCA
1 ATCA
26575176 CTTTCATTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (30 bp):
ATCAGATAAGTGTAGCCGAAGCTATCACTT
Found at i:26575161 original size:80 final size:80
Alignment explanation
Indices: 26575054--26575225 Score: 310
Period size: 80 Copynumber: 2.1 Consensus size: 80
26575044 CACTTTCACT
*
26575054 TATC-CTTGATCAAATAAGTGTAGCCGAAGTTATCACTTATCACTTTCATTTGTCCTTGATCAGA
1 TATCACTT-ATCAAATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGA
26575118 TAAGTGTAGCCGAAGC
65 TAAGTGTAGCCGAAGC
*
26575134 TATCACTTATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGAT
1 TATCACTTATCAAATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGAT
26575199 AAGTGTAGCCGAAGC
66 AAGTGTAGCCGAAGC
26575214 TATCACTTATCA
1 TATCACTTATCA
26575226 CTTTCACTTG
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
80 86 0.97
81 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (80 bp):
TATCACTTATCAAATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGAT
AAGTGTAGCCGAAGC
Found at i:26575170 original size:130 final size:130
Alignment explanation
Indices: 26574992--26575275 Score: 462
Period size: 130 Copynumber: 2.2 Consensus size: 130
26574982 CGATGATCAG
* * *
26574992 GTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGAAGCTATCACTTATCACTTTCACTTAT
1 GTAGCCGAAGCTATCACTTATCA-TGATAAGGTAGCCGAAGCTATCACTTATCACTTTCACTTAT
* * *
26575057 CCTTGATCAAATAAGTGTAGCCGAAGTTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAG
65 CCTTGATCAAATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAG
26575122 T
130 T
* *
26575123 GTAGCCGAAGCTATCACTTATCA-GATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGT
1 GTAGCCGAAGCTATCACTTATCATGATAAG-GTAGCCGAAGCTATCACTTATCACTTTCACTTAT
*
26575187 CCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAG
65 CCTTGATCAAATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAG
26575252 T
130 T
26575253 GTAGCCGAAGCTATCACTTATCA
1 GTAGCCGAAGCTATCACTTATCA
26575276 CTTGTTGCCA
Statistics
Matches: 143, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
129 5 0.03
130 117 0.82
131 21 0.15
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (130 bp):
GTAGCCGAAGCTATCACTTATCATGATAAGGTAGCCGAAGCTATCACTTATCACTTTCACTTATC
CTTGATCAAATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
Found at i:26575217 original size:50 final size:50
Alignment explanation
Indices: 26575142--26575278 Score: 256
Period size: 50 Copynumber: 2.7 Consensus size: 50
26575132 GCTATCACTT
* *
26575142 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTG
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTG
26575192 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTG
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTG
26575242 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
26575279 GTTGCCATGG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 85 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (50 bp):
ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTG
Found at i:26578258 original size:39 final size:40
Alignment explanation
Indices: 26578105--26578274 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
26578095 CTAACGGGGT
*
26578105 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
26578145 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* *
26578185 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * **
26578225 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
26578263 TAAATCCCGAAG
1 TAAGTCCCGAAG
26578275 ATAATTGGGT
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 12 0.10
39 16 0.14
40 87 0.75
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:26583424 original size:31 final size:31
Alignment explanation
Indices: 26583389--26583458 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
26583379 CTTGTCACTT
* * *
26583389 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
26583420 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
26583451 GTAGCCGA
1 GTAGCCGA
26583459 TGATTAGGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:26583487 original size:46 final size:46
Alignment explanation
Indices: 26583413--26583504 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
26583403 CACTATTCAC
* *
26583413 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * * *
26583459 TGATTAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
26583505 AGCTATCACT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:26583572 original size:50 final size:50
Alignment explanation
Indices: 26583497--26583722 Score: 398
Period size: 50 Copynumber: 4.5 Consensus size: 50
26583487 CATTGATCAG
* * *
26583497 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
* *
26583547 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
26583597 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
26583647 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
*
26583697 GTAGCCAAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
26583723 GTTGCCATGG
Statistics
Matches: 170, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 170 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
Found at i:26587368 original size:42 final size:46
Alignment explanation
Indices: 26587321--26587468 Score: 139
Period size: 49 Copynumber: 3.2 Consensus size: 46
26587311 ACGTCTTCAA
26587321 CTATGGTCTTACAC-AT-C-T-TCACATAAT-GATGCCATAGCCCAG
1 CTATGGTCTTACACAATACATATCACAT-ATCGATGCCATAGCCCAG
* *
26587363 CTATGGTCTTAAACGTAATCACATATCACATATCGATTCCATAGCCCAG
1 CTATGGTCTTACAC--AAT-ACATATCACATATCGATGCCATAGCCCAG
* * *
26587412 CTATGGTCTTACACGAATCACATATCTC--ACCGATGCCATATCCCAG
1 CTATGGTCTTACAC-AAT-ACATATCACATATCGATGCCATAGCCCAG
*
26587458 ATATGGTCTTA
1 CTATGGTCTTA
26587469 TACGGAAATC
Statistics
Matches: 89, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
42 13 0.15
45 2 0.02
46 25 0.28
47 1 0.01
48 15 0.17
49 33 0.37
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (46 bp):
CTATGGTCTTACACAATACATATCACATATCGATGCCATAGCCCAG
Found at i:26587405 original size:49 final size:48
Alignment explanation
Indices: 26587339--26587468 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 48
26587329 TTACACATCT
26587339 TCACATAAT-GATGCCATAGCCCAGCTATGGTCTTAAACGTAATCACATA
1 TCACAT-ATCGATGCCATAGCCCAGCTATGGTCTTAAACG-AATCACATA
* *
26587388 TCACATATCGATTCCATAGCCCAGCTATGGTCTTACACGAATCACATA
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTAAACGAATCACATA
* * * *
26587436 TCTC--ACCGATGCCATATCCCAGATATGGTCTTA
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTA
26587469 TACGGAAATC
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 25 0.34
48 14 0.19
49 34 0.47
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (48 bp):
TCACATATCGATGCCATAGCCCAGCTATGGTCTTAAACGAATCACATA
Found at i:26587532 original size:31 final size:31
Alignment explanation
Indices: 26587497--26587645 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
26587487 CTTGTCACTT
*
26587497 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
26587528 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
26587559 GTAGCCGGAGCTACTACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
26587590 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
26587621 GGAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
26587646 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:26587720 original size:50 final size:50
Alignment explanation
Indices: 26587627--26587797 Score: 270
Period size: 50 Copynumber: 3.4 Consensus size: 50
26587617 TCAGGGAGCT
* * *
26587627 GAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCC
1 GAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGTGTAGCC
*
26587678 GAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGTGTAGCC
1 GAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCC
* *
26587728 GAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGTC
1 GAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCC
*
26587778 AAAGCTATCACTTATCACTT
1 GAAGCTATCACTTATCACTT
26587798 GTTGCCATGG
Statistics
Matches: 111, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 93 0.84
51 18 0.16
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (50 bp):
GAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCC
Found at i:26591049 original size:25 final size:25
Alignment explanation
Indices: 26591016--26591075 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
26591006 GAGTTGTAAA
*
26591016 CGGTAAGCTTATACGAGCTAAATAT
1 CGGTAAGCTCATACGAGCTAAATAT
** *
26591041 CGGTAAGCTCATGTGAGCTGAATAT
1 CGGTAAGCTCATACGAGCTAAATAT
26591066 CGGTAAGCTC
1 CGGTAAGCTC
26591076 TCTCGAGTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (25 bp):
CGGTAAGCTCATACGAGCTAAATAT
Found at i:26591092 original size:25 final size:25
Alignment explanation
Indices: 26591016--26591096 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 25
26591006 GAGTTGTAAA
* *
26591016 CGGTAAGCTTATAC-GAGCTAAATAT
1 CGGTAAGCTCAT-CTGAGCTGAATAT
*
26591041 CGGTAAGCTCATGTGAGCTGAATAT
1 CGGTAAGCTCATCTGAGCTGAATAT
*
26591066 CGGTAAGCTC-TCTCGAGTTGAGA-AT
1 CGGTAAGCTCATCT-GAGCTGA-ATAT
26591091 CGGTAA
1 CGGTAA
26591097 CCCTAATGAC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
24 2 0.04
25 45 0.94
26 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (25 bp):
CGGTAAGCTCATCTGAGCTGAATAT
Found at i:26593292 original size:38 final size:38
Alignment explanation
Indices: 26593249--26593365 Score: 137
Period size: 38 Copynumber: 3.1 Consensus size: 38
26593239 CACACGGTCA
* * *
26593249 TGTAACCCTTTCACACAGCCTATAGCTTCGCACACCCG
1 TGTAACCCTTCCACACAACCTATAGCTTCACACACCCG
* ***
26593287 TGTAACCCTTCCATACAACCTATAGCTTCACATGGCCG
1 TGTAACCCTTCCACACAACCTATAGCTTCACACACCCG
* *
26593325 CGTAACCCTTCCACACAATCTATAGCTTCACACGA-CCG
1 TGTAACCCTTCCACACAACCTATAGCTTCACAC-ACCCG
26593363 TGT
1 TGT
26593366 GCCCCCTGTT
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.26, C:0.37, G:0.13, T:0.25
Consensus pattern (38 bp):
TGTAACCCTTCCACACAACCTATAGCTTCACACACCCG
Found at i:26596748 original size:21 final size:21
Alignment explanation
Indices: 26596724--26596763 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26596714 CTATCTTTTT
26596724 TCGA-ATTAATATATTTATATG
1 TCGATATTAA-ATATTTATATG
*
26596745 TCGATTTTAAATATTTATA
1 TCGATATTAAATATTTATA
26596764 ATATTGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (21 bp):
TCGATATTAAATATTTATATG
Found at i:26598121 original size:26 final size:26
Alignment explanation
Indices: 26598092--26598157 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
26598082 ATAGTTACCC
26598092 ATTTTTTAAATTTAT-TTTTATTTAAT
1 ATTTTTTAAATTTATATTTTA-TTAAT
**
26598118 ATTTAGT-AATTATATATTTTATTAAT
1 ATTTTTTAAATT-TATATTTTATTAAT
*
26598144 A-TTTTTAATTTTAT
1 ATTTTTTAAATTTAT
26598158 GATATTTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
25 10 0.31
26 17 0.53
27 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (26 bp):
ATTTTTTAAATTTATATTTTATTAAT
Found at i:26598156 original size:18 final size:17
Alignment explanation
Indices: 26598133--26598168 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26598123 GTAATTATAT
26598133 ATTTTATTAATATTTTTA
1 ATTTTA-TAATATTTTTA
*
26598151 ATTTTATGATATTTTTA
1 ATTTTATAATATTTTTA
26598168 A
1 A
26598169 ACATAAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
ATTTTATAATATTTTTA
Found at i:26602839 original size:44 final size:44
Alignment explanation
Indices: 26602789--26602881 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 44
26602779 GACACATGAC
26602789 CAAGTTACACGACCATGTGAATAGCACATGTAACTTACTGTCCA
1 CAAGTTACACGACCATGTGAATAGCACATGTAACTTACTGTCCA
* *
26602833 CAAGTTACACGGCCATGTGAATAGCATATGTAACTTACTGTCCA
1 CAAGTTACACGACCATGTGAATAGCACATGTAACTTACTGTCCA
*
26602877 AAAGT
1 CAAGT
26602882 GCCAAACATA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (44 bp):
CAAGTTACACGACCATGTGAATAGCACATGTAACTTACTGTCCA
Found at i:26607056 original size:20 final size:20
Alignment explanation
Indices: 26607014--26607062 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26607004 AGAATATAAT
**
26607014 AGAAAACGG-GAAAGAAAGGA
1 AGAAAA-GGAGAAAGAAAAAA
26607034 AGAAAAGGAGAAAGAAAAAA
1 AGAAAAGGAGAAAGAAAAAA
26607054 AGAAAAGGA
1 AGAAAAGGA
26607063 AAAACTAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.67, C:0.02, G:0.31, T:0.00
Consensus pattern (20 bp):
AGAAAAGGAGAAAGAAAAAA
Found at i:26608337 original size:36 final size:36
Alignment explanation
Indices: 26608249--26608339 Score: 107
Period size: 36 Copynumber: 2.5 Consensus size: 36
26608239 TGACTGTTAT
*
26608249 TGAATAATTG-ATCGTTACTGAATAACTGATTGCTAC
1 TGAATAATTGAAT-GTTACTGAATAACTAATTGCTAC
* *
26608285 T-AAGCAAAT-AATTGTTACTGAATAACTAATTGCTAC
1 TGAA-TAATTGAA-TGTTACTGAATAACTAATTGCTAC
26608321 TGAATAATTGAATGTTACT
1 TGAATAATTGAATGTTACT
26608340 AAGTGAAACT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
35 2 0.04
36 38 0.84
37 5 0.11
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (36 bp):
TGAATAATTGAATGTTACTGAATAACTAATTGCTAC
Found at i:26608339 original size:18 final size:18
Alignment explanation
Indices: 26608224--26608339 Score: 71
Period size: 18 Copynumber: 6.5 Consensus size: 18
26608214 GGGGTAAATA
*
26608224 AATG-TACTGAATGACTG
1 AATGTTACTGAATAACTG
* * *
26608241 ACTGTTATTGAATAATTG
1 AATGTTACTGAATAACTG
26608259 -ATCGTTACTGAATAACTG
1 AAT-GTTACTGAATAACTG
* * * *
26608277 ATTGCTACT-AAGCAAAT-
1 AATGTTACTGAA-TAACTG
26608294 AATTGTTACTGAATAACT-
1 AA-TGTTACTGAATAACTG
* *
26608312 AATTGCTACTGAATAATTG
1 AA-TGTTACTGAATAACTG
26608331 AATGTTACT
1 AATGTTACT
26608340 AAGTGAAACT
Statistics
Matches: 74, Mismatches: 18, Indels: 13
0.70 0.17 0.12
Matches are distributed among these distances:
17 7 0.09
18 62 0.84
19 5 0.07
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (18 bp):
AATGTTACTGAATAACTG
Found at i:26614190 original size:17 final size:17
Alignment explanation
Indices: 26614168--26614210 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
26614158 CATTTAGGCT
26614168 GTGTAGGCCACATGGGC
1 GTGTAGGCCACATGGGC
26614185 GTGTAGGCCACATGGGC
1 GTGTAGGCCACATGGGC
26614202 GTGTAGGCC
1 GTGTAGGCC
26614211 CACACGGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.16, C:0.23, G:0.42, T:0.19
Consensus pattern (17 bp):
GTGTAGGCCACATGGGC
Found at i:26615176 original size:13 final size:13
Alignment explanation
Indices: 26615158--26615183 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26615148 CACTTGATAA
26615158 GGTTTCCTAAAAG
1 GGTTTCCTAAAAG
26615171 GGTTTCCTAAAAG
1 GGTTTCCTAAAAG
26615184 TACTTTCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GGTTTCCTAAAAG
Found at i:26617132 original size:18 final size:17
Alignment explanation
Indices: 26617109--26617220 Score: 89
Period size: 18 Copynumber: 6.2 Consensus size: 17
26617099 TAAATAAAGG
*
26617109 TACTGAATGACTGACTGT
1 TACTGAATAACTGA-TGT
*
26617127 TACTGAATAATTGATCGT
1 TACTGAATAACTGAT-GT
*
26617145 TACTGAATAACTGATTGC
1 TACTGAATAACTGA-TGT
** *
26617163 TACTGAGCAAATGATTGT
1 TACTGAATAACTGA-TGT
* *
26617181 TACTGAATAACTAATTGC
1 TACTGAATAACTGA-TGT
*
26617199 TACTGAATAATTGAATGT
1 TACTGAATAACTG-ATGT
26617217 TACT
1 TACT
26617221 AAGTGAAACT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
17 1 0.01
18 72 0.96
19 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (17 bp):
TACTGAATAACTGATGT
Found at i:26617149 original size:36 final size:35
Alignment explanation
Indices: 26617109--26617220 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 35
26617099 TAAATAAAGG
* * *
26617109 TACTGAATGACTGACTGTTACTGAATAATTGATCGT
1 TACTGAATAACTGATTGCTACTGAATAATTGAT-GT
** *
26617145 TACTGAATAACTGATTGCTACTGAGCAAATGATTGT
1 TACTGAATAACTGATTGCTACTGAATAATTGA-TGT
*
26617181 TACTGAATAACTAATTGCTACTGAATAATTGAATGT
1 TACTGAATAACTGATTGCTACTGAATAATTG-ATGT
26617217 TACT
1 TACT
26617221 AAGTGAAACT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
36 62 0.97
37 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (35 bp):
TACTGAATAACTGATTGCTACTGAATAATTGATGT
Found at i:26618646 original size:339 final size:339
Alignment explanation
Indices: 26618026--26618703 Score: 1198
Period size: 339 Copynumber: 2.0 Consensus size: 339
26618016 GGCACACGGG
* *
26618026 CGTGTGTCTTGGCTGTATGAAACTATTTTGTTCATAAGTAATTAGTCAGAGAGTTACACGGATAA
1 CGTGTGTCTTGGCAGTATGAAACTATTTTGTTCATAAGTAATAAGTCAGAGAGTTACACGGATAA
*
26618091 AGGACACGGGCATGTCCCCTAGACCACACGAGCGTGTGGGCACTGTTCAATAGGAAAATTTTGAA
66 AGGACACGGGCATGTCCCCTAGACCACACGAGCGTGTGGGCACTATTCAATAGGAAAATTTTGAA
*
26618156 ATTTTGAGAAAAATTCGTAGTGATTTTAAATTAGTCTCGAATTGATTTTACTATTCATATTGGAC
131 ATTTTGAGAAAAATTCATAGTGATTTTAAATTAGTCTCGAATTGATTTTACTATTCATATTGGAC
26618221 TTCGAGGGACCATTAAAGGGACGATACATTAAATTTAGGATAAGTGTAAACAATTATATTAATTA
196 TTCGAGGGACCATTAAAGGGACGATACATTAAATTTAGGATAAGTGTAAACAATTATATTAATTA
*
26618286 ATGTCCGTAATTGAACTGTATTGACTGGTAATGCCCCGCAATACTATT-TCGGGGATGAATAAGG
261 ATGTCCGTAATTGAACTGTATTGACTGGTAATGCCCCGCAATACTGTTCT-GGGGATGAATAAGG
26618350 GTTAGGGGATGTTAC
325 GTTAGGGGATGTTAC
26618365 CGTGTGTCTTGGCAGTATGAAACTATTTTGTTCATAAGTAATAAGTCAGAGAGTTACACGGATAA
1 CGTGTGTCTTGGCAGTATGAAACTATTTTGTTCATAAGTAATAAGTCAGAGAGTTACACGGATAA
* * * *
26618430 AGGACATGGGCGTGTCCCCTAGACCATACGAGCGTGTGGGTACTATTCAATAGGAAAATTTTGAA
66 AGGACACGGGCATGTCCCCTAGACCACACGAGCGTGTGGGCACTATTCAATAGGAAAATTTTGAA
*
26618495 ATTTTGAGAAAAATTCATAGTGATTTTAAATTAGT-TCCGAATTGATTTTACTGTTCATATTGGA
131 ATTTTGAGAAAAATTCATAGTGATTTTAAATTAGTCT-CGAATTGATTTTACTATTCATATTGGA
*
26618559 CTTCGAGGGCCCATTAAAGGGACGATACATTAAATTTAGGATAAGTGTAAACAATTATATTAATT
195 CTTCGAGGGACCATTAAAGGGACGATACATTAAATTTAGGATAAGTGTAAACAATTATATTAATT
* * *
26618624 AATGTCCGTAGTTGAACTGTATTGACTGGTAATGCCCCGCAATCCTGTTCTGGGGATGGATAAGG
260 AATGTCCGTAATTGAACTGTATTGACTGGTAATGCCCCGCAATACTGTTCTGGGGATGAATAAGG
26618689 GTTAGGGGATGTTAC
325 GTTAGGGGATGTTAC
26618704 AGTAGGACTA
Statistics
Matches: 323, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
338 1 0.00
339 321 0.99
340 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (339 bp):
CGTGTGTCTTGGCAGTATGAAACTATTTTGTTCATAAGTAATAAGTCAGAGAGTTACACGGATAA
AGGACACGGGCATGTCCCCTAGACCACACGAGCGTGTGGGCACTATTCAATAGGAAAATTTTGAA
ATTTTGAGAAAAATTCATAGTGATTTTAAATTAGTCTCGAATTGATTTTACTATTCATATTGGAC
TTCGAGGGACCATTAAAGGGACGATACATTAAATTTAGGATAAGTGTAAACAATTATATTAATTA
ATGTCCGTAATTGAACTGTATTGACTGGTAATGCCCCGCAATACTGTTCTGGGGATGAATAAGGG
TTAGGGGATGTTAC
Found at i:26625880 original size:30 final size:32
Alignment explanation
Indices: 26625845--26625931 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 32
26625835 AATAGTTGGC
26625845 TTAAATTTTAAAATTTTAAAAA-TAAAAG-AA
1 TTAAATTTTAAAATTTTAAAAAGTAAAAGAAA
* *
26625875 TTAAATTAATAAAA--ATAAAAAGT-AAAGAAA
1 TTAAATT-TTAAAATTTTAAAAAGTAAAAGAAA
* *
26625905 CTAAATTTTAAATTTTTAAAAAGTAAA
1 TTAAATTTTAAAATTTTAAAAAGTAAA
26625932 CAGATTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
29 14 0.31
30 16 0.36
31 13 0.29
32 2 0.04
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (32 bp):
TTAAATTTTAAAATTTTAAAAAGTAAAAGAAA
Found at i:26631572 original size:40 final size:40
Alignment explanation
Indices: 26631469--26631603 Score: 236
Period size: 40 Copynumber: 3.4 Consensus size: 40
26631459 GACTTATAGT
* *
26631469 CCGCAGACTTTGTGCTGGTAATAGATATCTGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
26631509 CCGCAGGC-TTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
26631548 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
*
26631588 CCGTAGGCTTTGTGCT
1 CCGCAGGCTTTGTGCT
26631604 AGAAATTAGA
Statistics
Matches: 91, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 38 0.42
40 53 0.58
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
Found at i:26638769 original size:39 final size:40
Alignment explanation
Indices: 26638714--26638847 Score: 225
Period size: 40 Copynumber: 3.4 Consensus size: 40
26638704 ACTTATAGTT
*
26638714 CGCAGGCTTTGTGCTGGCAATAGATATCCGGGTTAAATCC
1 CGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCC
26638754 CGCAGGC-TTGTGCTGGTAATAGATATCCGGGTTAAATCC
1 CGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCC
* *
26638793 CGCTGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCT
1 CGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCC
*
26638833 CGTAGGCTTTGTGCT
1 CGCAGGCTTTGTGCT
26638848 AGAAATTGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 37 0.42
40 51 0.58
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (40 bp):
CGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCC
Found at i:26645624 original size:78 final size:79
Alignment explanation
Indices: 26645533--26645687 Score: 204
Period size: 79 Copynumber: 2.0 Consensus size: 79
26645523 TTAACAACAG
* * * * *
26645533 AAATCGAATAAATTCTATTGAATGACA-TAATAGAATCCTGAAACAGAATTGTTTAATTGATTTC
1 AAATCGAAAAAATTCTATTGAACGACAGGAATAAAATCCTGAAACAGAATTGTTCAATTGATTTC
26645597 TATTTAAAAACAAA
66 TATTTAAAAACAAA
* * * *
26645611 AAATCGAAAAAATTCTGTTGAACGATAGGAATAAAATCTTGAAATAGAATTGTTCAATTGATTTC
1 AAATCGAAAAAATTCTATTGAACGACAGGAATAAAATCCTGAAACAGAATTGTTCAATTGATTTC
* *
26645676 TGTTTACAAACA
66 TATTTAAAAACA
26645688 TAATACAATT
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
78 23 0.35
79 42 0.65
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (79 bp):
AAATCGAAAAAATTCTATTGAACGACAGGAATAAAATCCTGAAACAGAATTGTTCAATTGATTTC
TATTTAAAAACAAA
Found at i:26646232 original size:203 final size:203
Alignment explanation
Indices: 26645877--26646274 Score: 580
Period size: 203 Copynumber: 2.0 Consensus size: 203
26645867 AATTGGATGA
* * *
26645877 AAATTGTGTACTCGTAGGTAAGAAAAAATCCAACTGGTAATTGAGGCCTGTTTGCACAGTTTCCT
1 AAATTGTGTACTCATAGGTAAGAAAAAATCCAACTGGTAATTGAAGCCTATTTGCACAGTTTCCT
*
26645942 TAAGAAAGATTCAGTAGCTCCTTTGGTGCTAGAGAAATGTTGGTCAACTGTCTCCTAGGATACAA
66 TAAGAAAGATTCAGTAGCTCCTTTGGTGCTAGAGAAACGTTGGTCAACTGTCTCCTAGGATACAA
*
26646007 CAAAAAGATGAGCACAGCTGCAGTAATCAATGAACTATAGCCTAGCTTTCTTCTATCACCGAAAA
131 CAAAAAGATGAGCACAGCTGCAGTAATCAACGAACTATAGCCTAGCTTTCTTCTATCACCGAAAA
26646072 CAGGATCG
196 CAGGATCG
* * * * * *
26646080 AAATTGTGTACTCATAGGTAGGCAGAAGTCCGACTGGTAATTGAAGCCTATTTTCACAGTTTCCT
1 AAATTGTGTACTCATAGGTAAGAAAAAATCCAACTGGTAATTGAAGCCTATTTGCACAGTTTCCT
* * * * * *
26646145 TAAGACAGATTCAGTCGTTCCTTTGGTGCTGGAGAAACGTTGGTCGATTGTCTCCTAGGATACAA
66 TAAGAAAGATTCAGTAGCTCCTTTGGTGCTAGAGAAACGTTGGTCAACTGTCTCCTAGGATACAA
** * * ** *
26646210 CAACGAGATGAGCACGGCTGCAGTGATCAACGAACTATAGTGTAGCTTTCTTCTATCACTGAAAA
131 CAAAAAGATGAGCACAGCTGCAGTAATCAACGAACTATAGCCTAGCTTTCTTCTATCACCGAAAA
26646275 TAGGTTCGGA
Statistics
Matches: 171, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
203 171 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (203 bp):
AAATTGTGTACTCATAGGTAAGAAAAAATCCAACTGGTAATTGAAGCCTATTTGCACAGTTTCCT
TAAGAAAGATTCAGTAGCTCCTTTGGTGCTAGAGAAACGTTGGTCAACTGTCTCCTAGGATACAA
CAAAAAGATGAGCACAGCTGCAGTAATCAACGAACTATAGCCTAGCTTTCTTCTATCACCGAAAA
CAGGATCG
Found at i:26655082 original size:12 final size:12
Alignment explanation
Indices: 26655065--26655097 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
26655055 TGGCCCGCCC
26655065 ATATTAATTTTT
1 ATATTAATTTTT
26655077 ATATT-ATTTTT
1 ATATTAATTTTT
26655088 ATA-TAATTTT
1 ATATTAATTTT
26655098 AAAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:26655264 original size:30 final size:30
Alignment explanation
Indices: 26655220--26655280 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
26655210 ACTTAACAAG
26655220 CAAATGCTTCTAAAATAATAAAAAAATTAA
1 CAAATGCTTCTAAAATAATAAAAAAATTAA
*
26655250 CAAATGTCTT-TAAAATAATAACAAAATTAA
1 CAAATG-CTTCTAAAATAATAAAAAAATTAA
26655280 C
1 C
26655281 GATAAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 26 0.90
31 3 0.10
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATGCTTCTAAAATAATAAAAAAATTAA
Found at i:26655407 original size:11 final size:11
Alignment explanation
Indices: 26655368--26655408 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
26655358 AAGTTTTATA
26655368 CAAAATAGTAG
1 CAAAATAGTAG
* *
26655379 CAACATAATAG
1 CAAAATAGTAG
*
26655390 TAAAATAGTAG
1 CAAAATAGTAG
26655401 CAAAATAG
1 CAAAATAG
26655409 GAAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:26658344 original size:43 final size:43
Alignment explanation
Indices: 26658289--26658483 Score: 302
Period size: 43 Copynumber: 4.5 Consensus size: 43
26658279 AAGTTCGGTT
*
26658289 TAATGTAA-TGGCACTAAGTGTGCGATATAATTATAGCTTCGGC
1 TAAT-TAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGC
*
26658332 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTTGGC
1 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGC
*
26658375 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGT
1 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGC
* * * *
26658418 TAATTAATTGGCACTAAGTGTGCGAAACCATTATAACTTCGGT
1 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGC
*
26658461 TAATTAATTAGCACTAAGTGTGC
1 TAATTAATTGGCACTAAGTGTGC
26658484 AATTTTGTTG
Statistics
Matches: 143, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
42 3 0.02
43 140 0.98
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (43 bp):
TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGC
Found at i:26664079 original size:91 final size:91
Alignment explanation
Indices: 26663924--26664102 Score: 340
Period size: 91 Copynumber: 2.0 Consensus size: 91
26663914 AATTATAGAG
26663924 AATTGAATGACATGTATAAGTTAGATTTAATTCCTATTTTTAATAATAATATTGAAAAATGCAAT
1 AATTGAATGACATGTATAAGTTAGATTTAATTCCTATTTTTAATAATAATATTGAAAAATGCAAT
26663989 ACATGTATGTTGACTAAAATTACGAA
66 ACATGTATGTTGACTAAAATTACGAA
* *
26664015 AATTGAATGACATGTATAAGTTAGATTTAATTCTTGTTTTTAATAATAATATTGAAAAATGCAAT
1 AATTGAATGACATGTATAAGTTAGATTTAATTCCTATTTTTAATAATAATATTGAAAAATGCAAT
26664080 ACATGTATGTTGACTAAAATTAC
66 ACATGTATGTTGACTAAAATTAC
26664103 AAGAAACCCT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (91 bp):
AATTGAATGACATGTATAAGTTAGATTTAATTCCTATTTTTAATAATAATATTGAAAAATGCAAT
ACATGTATGTTGACTAAAATTACGAA
Found at i:26669479 original size:27 final size:27
Alignment explanation
Indices: 26669443--26669912 Score: 344
Period size: 27 Copynumber: 17.1 Consensus size: 27
26669433 GTTGTTAAGA
**
26669443 CCCTAGTTTGTAAAATTATTGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
** *
26669470 CCCTAGTTTGTAAAATTATTGAAATTC
1 CCCTAGTTTGTAAAATTACCGAAATAC
*
26669497 CCCCAGTTTGTAAAATTACCGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* **
26669524 CCCCAGTTTGTAAAATTATTGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
** *
26669551 CTTTGGTTTGTAAAATTACCGAAATA-
1 CCCTAGTTTGTAAAATTACCGAAATAC
* * *
26669577 CCTTCAGATTGTAAAATTATCGAAATAC
1 CCCT-AGTTTGTAAAATTACCGAAATAC
* * *
26669605 CTCTAGTTTTTAGAATTACCGAAATA-
1 CCCTAGTTTGTAAAATTACCGAAATAC
* * *
26669631 CCATCAGATTGTAAAATTACCAAAATAC
1 CCCT-AGTTTGTAAAATTACCGAAATAC
* *
26669659 CCTCGAATTGTCGATTTGTAAAATTACCAAAATAAC
1 CC-C------TAG-TTTGTAAAATTACCGAAAT-AC
* *
26669695 CCC-AATTTTTAAAATTACCGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* *
26669721 CCC-AATTTGTAAAATTACTGAAATA-
1 CCCTAGTTTGTAAAATTACCGAAATAC
* *
26669746 CCCTCAGATTGTAAAATTATCGAAATA-
1 CCCT-AGTTTGTAAAATTACCGAAATAC
* * * *
26669773 CCCTCGGATTGAAAAATTACCAAAATA-
1 CCCT-AGTTTGTAAAATTACCGAAATAC
* * * *
26669800 CCCTCAGATTATAAAATTATCAAAATAC
1 CCCT-AGTTTGTAAAATTACCGAAATAC
* * *
26669828 CCCTGGTTTGTGAAATTACTGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
** * *
26669855 CTTTAGATTGTAAAATTACTGAAATA-
1 CCCTAGTTTGTAAAATTACCGAAATAC
*
26669881 CCCTCAGTTTGTAAAATTACTGAAATAC
1 CCCT-AGTTTGTAAAATTACCGAAATAC
26669909 CCCT
1 CCCT
26669913 GTAGGGTAAA
Statistics
Matches: 360, Mismatches: 65, Indels: 35
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.01
26 32 0.09
27 288 0.80
28 12 0.03
34 1 0.00
35 20 0.06
36 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
CCCTAGTTTGTAAAATTACCGAAATAC
Found at i:26669514 original size:54 final size:55
Alignment explanation
Indices: 26669447--26669912 Score: 396
Period size: 54 Copynumber: 8.5 Consensus size: 55
26669437 TTAAGACCCT
** * * *
26669447 AGTTTGTAAAATTATTGAAATACCCCT-AGTTTGTAAAATTATTGAAATTCCCCC
1 AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATCGAAATACCCCC
* * ***
26669501 AGTTTGTAAAATTACCGAAATACCCC-CAGTTTGTAAAATTATTGAAATACCTTT
1 AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATCGAAATACCCCC
* * * *
26669555 GGTTTGTAAAATTACCGAAATA-CCTTCAGATTGTAAAATTATCGAAATACCTCT
1 AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATCGAAATACCCCC
* * * * * *
26669609 AGTTTTTAGAATTACCGAAATA-CCATCAGATTGTAAAATTACCAAAATACCCTCGA
1 AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATCGAAATACCC-C-C
* * * *
26669665 ATTGTCGATTTGTAAAATTACCAAAATAACCC-CA-ATTTTTAAAATTACCGAAATA-CCCC
1 A-----G-TTTGTAAAATTACCGAAATACCCCTCAGA-TTGTAAAATTATCGAAATACCCCC
* * *
26669724 AATTTGTAAAATTACTGAAATA-CCCTCAGATTGTAAAATTATCGAAATACCCTC
1 AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATCGAAATACCCCC
* * * * * * *
26669778 GGATTGAAAAATTACCAAAATA-CCCTCAGATTATAAAATTATCAAAATACCCCT
1 AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATCGAAATACCCCC
* * * * * *
26669832 GGTTTGTGAAATTACTGAAATA-CCTTTAGATTGTAAAATTA-CTGAAATACCCTC
1 AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATC-GAAATACCCCC
*
26669886 AGTTTGTAAAATTACTGAAATACCCCT
1 AGTTTGTAAAATTACCGAAATACCCCT
26669913 GTAGGGTAAA
Statistics
Matches: 339, Mismatches: 56, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
52 3 0.01
53 40 0.12
54 247 0.73
55 4 0.01
56 1 0.00
59 1 0.00
60 1 0.00
61 4 0.01
62 36 0.11
63 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (55 bp):
AGTTTGTAAAATTACCGAAATACCCCTCAGATTGTAAAATTATCGAAATACCCCC
Found at i:26669589 original size:81 final size:81
Alignment explanation
Indices: 26669447--26669910 Score: 394
Period size: 81 Copynumber: 5.6 Consensus size: 81
26669437 TTAAGACCCT
** ** * * *
26669447 AGTTTGTAAAATTATTGAAATACCC-CTAGTTTGTAAAATTATTGAAATTCCCCCAGTTTGTAAA
1 AGTTTGTAAAATTACCGAAATACCCTC-AGTTTGTAAAATTACCGAAATACCCTCAGATTGTAAA
26669511 ATTACCGAAATACCCCC
65 ATTACCGAAATACCCCC
** * ** *
26669528 AGTTTGTAAAATTATTGAAATACCTTTGGTTTGTAAAATTACCGAAATACCTTCAGATTGTAAAA
1 AGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTCAGATTGTAAAA
* * *
26669593 TTATCGAAATACCTCT
66 TTACCGAAATACCCCC
* * * * *
26669609 AGTTTTTAGAATTACCGAAATACCATCAGATTGTAAAATTACCAAAATACCCTCGAATTGTCGAT
1 AGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTC--A-----GA-
* *
26669674 TTGTAAAATTACCAAAATAACCCC
58 TTGTAAAATTACCGAAATACCCCC
* * * *
26669698 AATTTTTAAAATTACCGAAATACCC-CAATTTGTAAAATTACTGAAATACCCTCAGATTGTAAAA
1 AGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTCAGATTGTAAAA
* *
26669762 TTATCGAAATACCCTC
66 TTACCGAAATACCCCC
* * * * * * * * * * *
26669778 GGATTGAAAAATTACCAAAATACCCTCAGATTATAAAATTATCAAAATACCC-CTGGTTTGTGAA
1 AGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTC-AGATTGTAAA
* ***
26669842 ATTACTGAAATACCTTT
65 ATTACCGAAATACCCCC
* * *
26669859 AGATTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTACTGAAATACCC
1 AGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCGAAATACCC
26669911 CTGTAGGGTA
Statistics
Matches: 306, Mismatches: 66, Indels: 22
0.78 0.17 0.06
Matches are distributed among these distances:
80 40 0.13
81 197 0.64
83 1 0.00
86 1 0.00
88 26 0.08
89 41 0.13
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (81 bp):
AGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTCAGATTGTAAAA
TTACCGAAATACCCCC
Found at i:26669757 original size:169 final size:170
Alignment explanation
Indices: 26669503--26669829 Score: 442
Period size: 169 Copynumber: 1.9 Consensus size: 170
26669493 ATTCCCCCAG
* * * ** ****
26669503 TTTGTAAAATTACCGAAATACCCCCAGTTTGTAAAATTATTGAAATACCTTTGGTTTGTAAAATT
1 TTTGTAAAATTACCAAAATAACCCCAATTTGTAAAATTACCGAAATACCTCCAATTTGTAAAATT
* * ** * *
26669568 ACCGAAATACCTTCAGATTGTAAAATTATCGAAATA-CCTCTAGTTTTTAGAATTACCGAAATAC
66 ACCGAAATACCCTCAGATTGTAAAATTATCGAAATACCCTC-AGATTGAAAAATTACCAAAATAC
*
26669632 CATCAGATTGTAAAATTACCAAAATACCCTCGAATTGTCGA
130 CATCAGATTATAAAATTACCAAAATACCCTCGAATTGTCGA
*
26669673 TTTGTAAAATTACCAAAATAACCCCAATTTTTAAAATTACCGAAATACC-CCAATTTGTAAAATT
1 TTTGTAAAATTACCAAAATAACCCCAATTTGTAAAATTACCGAAATACCTCCAATTTGTAAAATT
* *
26669737 ACTGAAATACCCTCAGATTGTAAAATTATCGAAATACCCTCGGATTGAAAAATTACCAAAATACC
66 ACCGAAATACCCTCAGATTGTAAAATTATCGAAATACCCTCAGATTGAAAAATTACCAAAATACC
* *
26669802 CTCAGATTATAAAATTATCAAAATACCC
131 ATCAGATTATAAAATTACCAAAATACCC
26669830 CTGGTTTGTG
Statistics
Matches: 135, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
169 88 0.65
170 47 0.35
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (170 bp):
TTTGTAAAATTACCAAAATAACCCCAATTTGTAAAATTACCGAAATACCTCCAATTTGTAAAATT
ACCGAAATACCCTCAGATTGTAAAATTATCGAAATACCCTCAGATTGAAAAATTACCAAAATACC
ATCAGATTATAAAATTACCAAAATACCCTCGAATTGTCGA
Found at i:26671474 original size:15 final size:15
Alignment explanation
Indices: 26671454--26671483 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26671444 TTTGGCCGAA
26671454 TAGGCACTCTTATTT
1 TAGGCACTCTTATTT
*
26671469 TAGGCATTCTTATTT
1 TAGGCACTCTTATTT
26671484 CTTTCTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (15 bp):
TAGGCACTCTTATTT
Found at i:26673424 original size:46 final size:47
Alignment explanation
Indices: 26673374--26673495 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 47
26673364 ACTGATACAT
* * *
26673374 GTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCCGATG-GAA
1 GTCCCAGACATGTCTTACACTGGCTCT-CGTCTCAAGACCGATGCCAA
* * * *
26673420 GTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATACCGATGCCAT
1 GTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAGACCGATGCCAA
26673467 GTCCCAGACATGGTCTTACACTGGCTCTC
1 GTCCCAGACAT-GTCTTACACTGGCTCTC
26673496 ATAATGTGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 36 0.56
47 12 0.19
48 16 0.25
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (47 bp):
GTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAGACCGATGCCAA
Found at i:26674862 original size:27 final size:26
Alignment explanation
Indices: 26674829--26675289 Score: 289
Period size: 27 Copynumber: 17.2 Consensus size: 26
26674819 GGTTGTTAAG
***
26674829 ACCCTAGTTTGTAAAATTATTAAAAT
1 ACCCTAGTTTGTAAAATTACCGAAAT
*
26674855 ACCTCTAGTTTGTAAAATTATCGAAAT
1 ACC-CTAGTTTGTAAAATTACCGAAAT
* *
26674882 ACCACCAGTTTGTAAAATTACCAAAAT
1 ACC-CTAGTTTGTAAAATTACCGAAAT
** *
26674909 ACCCCCGATTTGTAAAATTATCGAAAT
1 ACCCTAG-TTTGTAAAATTACCGAAAT
** * *
26674936 ACCCCCGATTTATAAAATTACCAAAAT
1 ACCCTAG-TTTGTAAAATTACCGAAAT
* * * * **
26674963 AGCTTCGGATTGTAAAATTATTGAAAT
1 ACCCT-AGTTTGTAAAATTACCGAAAT
* **
26674990 A-CCTCGGATTTGTAAAATTAGTGAAAT
1 ACCCT-AG-TTTGTAAAATTACCGAAAT
** *
26675017 ACCCCCGGTTTGTAAAATTAACGAAAT
1 A-CCCTAGTTTGTAAAATTACCGAAAT
* * * *
26675044 ACCCTCGAATTATAAAATTACTGAAAT
1 ACCCTAG-TTTGTAAAATTACCGAAAT
* * *
26675071 ACCCTCAGATTGTAAAGTTACCAAAAT
1 ACCCT-AGTTTGTAAAATTACCGAAAT
* *
26675098 ACCCTCGGTTTGTAAAATTACCAAAAT
1 ACCCT-AGTTTGTAAAATTACCGAAAT
* * *
26675125 ACCCTTGACTTGTAAAATTATCGAAAT
1 ACCCTAG-TTTGTAAAATTACCGAAAT
* *
26675152 ACCCCT-GATTTATAAAATTACTGAAAT
1 A-CCCTAG-TTTGTAAAATTACCGAAAT
* * * *
26675179 ACCATTGAATTGTAAAATTATCGAAAT
1 ACCCTAG-TTTGTAAAATTACCGAAAT
* *
26675206 ACCCCTAGTTTTTAAAATTATCGAAAT
1 A-CCCTAGTTTGTAAAATTACCGAAAT
* *
26675233 ACCCCTTGTTT-TAAAATTACTGAAAT
1 A-CCCTAGTTTGTAAAATTACCGAAAT
* **
26675259 ACCCCTAATTTGTAAAATTACTAAAAT
1 A-CCCTAGTTTGTAAAATTACCGAAAT
26675286 ACCC
1 ACCC
26675290 CTGTAGGGTA
Statistics
Matches: 358, Mismatches: 64, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
26 44 0.12
27 300 0.84
28 12 0.03
29 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (26 bp):
ACCCTAGTTTGTAAAATTACCGAAAT
Found at i:26674921 original size:54 final size:53
Alignment explanation
Indices: 26674829--26675290 Score: 364
Period size: 54 Copynumber: 8.6 Consensus size: 53
26674819 GGTTGTTAAG
* * * *
26674829 ACCCTAGTTTGTAAAATTATTAAAATA-CCTCTAGTTTGTAAAATTATCGAAAT
1 ACCCCAGTTTGTAAAATTACTAAAATACCCCCGA-TTTGTAAAATTATCGAAAT
*
26674882 ACCACCAGTTTGTAAAATTACCAAAATACCCCCGATTTGTAAAATTATCGAAAT
1 ACC-CCAGTTTGTAAAATTACTAAAATACCCCCGATTTGTAAAATTATCGAAAT
* * * ** * *
26674936 ACCCCCGATTTATAAAATTACCAAAATAGCTTCGGA-TTGTAAAATTATTGAAAT
1 ACCCCAG-TTTGTAAAATTACTAAAATA-CCCCCGATTTGTAAAATTATCGAAAT
* * * * * *
26674990 ACCTCGGATTTGTAAAATTAGTGAAATACCCCCGGTTTGTAAAATTAACGAAAT
1 ACCCCAG-TTTGTAAAATTACTAAAATACCCCCGATTTGTAAAATTATCGAAAT
* * * * * * *
26675044 ACCCTC-GAATTATAAAATTACTGAAATACCCTCAGA-TTGTAAAGTTACCAAAAT
1 ACCC-CAG-TTTGTAAAATTACTAAAATACCC-CCGATTTGTAAAATTATCGAAAT
* * ** *
26675098 ACCCTCGGTTTGTAAAATTACCAAAATACCCTTGACTTGTAAAATTATCGAAAT
1 ACCC-CAGTTTGTAAAATTACTAAAATACCCCCGATTTGTAAAATTATCGAAAT
* * * *** *
26675152 ACCCCTGATTTATAAAATTACTGAAATACCATTGAATTGTAAAATTATCGAAAT
1 ACCCCAG-TTTGTAAAATTACTAAAATACCCCCGATTTGTAAAATTATCGAAAT
* * *
26675206 ACCCCTAGTTTTTAAAATTA-TCGAAATACCCCTTG-TTT-TAAAATTA-CTGAAAT
1 ACCCC-AGTTTGTAAAATTACT-AAAATACCCC-CGATTTGTAAAATTATC-GAAAT
*
26675259 ACCCCTAATTTGTAAAATTACTAAAATACCCC
1 ACCCC-AGTTTGTAAAATTACTAAAATACCCC
26675291 TGTAGGGTAA
Statistics
Matches: 339, Mismatches: 55, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.00
53 54 0.16
54 269 0.79
55 15 0.04
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (53 bp):
ACCCCAGTTTGTAAAATTACTAAAATACCCCCGATTTGTAAAATTATCGAAAT
Found at i:26674976 original size:81 final size:81
Alignment explanation
Indices: 26674836--26675288 Score: 321
Period size: 81 Copynumber: 5.6 Consensus size: 81
26674826 AAGACCCTAG
** * ** * * ** * *
26674836 TTTGTAAAATTATTAAAATACCTCTAGTTTGTAAAATTATCGAAATACCACCAGTTTGTAAAATT
1 TTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTACCAAAATACCTTCGGATTGTAAAATT
* *
26674901 ACCAAAATACCCCCGA
66 ACCGAAATACCCCAGA
* * *
26674917 TTTGTAAAATTATCGAAATACCCCCGATTTATAAAATTACCAAAATAGCTTCGGATTGTAAAATT
1 TTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTACCAAAATACCTTCGGATTGTAAAATT
** * *
26674982 ATTGAAATACCTCGGA
66 ACCGAAATACCCCAGA
* * * * *
26674998 TTTGTAAAATTAGT-GAAATACCCCCGGTTTGTAAAATTAACGAAATACCCTCGAATTATAAAAT
1 TTTGTAAAATTA-TCGAAATACCCCCGGTTTGTAAAATTACCAAAATACCTTCGGATTGTAAAAT
*
26675062 TACTGAAATACCCTCAGA
65 TACCGAAATACCC-CAGA
* * * *
26675080 -TTGTAAAGTTACCAAAATACCCTCGGTTTGTAAAATTACCAAAATACCCTT--GACTTGTAAAA
1 TTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTACCAAAATA-CCTTCGGA-TTGTAAAA
* *
26675142 TTATCGAAATACCCCTGA
64 TTACCGAAATACCCCAGA
* *** ** * * * * * *
26675160 TTTATAAAATTA-CTGAAATACCATTGAATTGTAAAATTATCGAAATACC-CCTAGTTTTTAAAA
1 TTTGTAAAATTATC-GAAATACCCCCGGTTTGTAAAATTACCAAAATACCTTC-GGATTGTAAAA
* *
26675223 TTATCGAAATACCCCTTG-
64 TTACCGAAATACCCC-AGA
*** *
26675241 TTT-TAAAATTA-CTGAAATACCCCTAATTTGTAAAATTACTAAAATACC
1 TTTGTAAAATTATC-GAAATACCCCCGGTTTGTAAAATTACCAAAATACC
26675289 CCTGTAGGGT
Statistics
Matches: 300, Mismatches: 61, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
80 45 0.15
81 245 0.82
82 10 0.03
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (81 bp):
TTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTACCAAAATACCTTCGGATTGTAAAATT
ACCGAAATACCCCAGA
Found at i:26675300 original size:27 final size:27
Alignment explanation
Indices: 26675244--26675308 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
26675234 CCCCTTGTTT
* **
26675244 TAAAATTACTGAAATACCCCTAATTTG
1 TAAAATTACTAAAATACCCCTAATGGG
*
26675271 TAAAATTACTAAAATACCCCT-GTAGGG
1 TAAAATTACTAAAATACCCCTAAT-GGG
*
26675298 TAAAATGACTA
1 TAAAATTACTA
26675309 TTTTGCCCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (27 bp):
TAAAATTACTAAAATACCCCTAATGGG
Found at i:26699084 original size:9 final size:8
Alignment explanation
Indices: 26699059--26699094 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
26699049 TCAAAACTAC
26699059 AAAATTTA
1 AAAATTTA
26699067 AAAATTTA
1 AAAATTTA
26699075 AAAATATTA
1 AAAAT-TTA
26699084 ATAAATTTA
1 A-AAATTTA
26699093 AA
1 AA
26699095 TACGCTTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 14 0.54
9 8 0.31
10 4 0.15
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AAAATTTA
Found at i:26699091 original size:18 final size:16
Alignment explanation
Indices: 26699059--26699094 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
26699049 TCAAAACTAC
26699059 AAAATTTAAAAATTTA
1 AAAATTTAAAAATTTA
26699075 AAAATATTAATAAATTTA
1 AAAAT-TTAA-AAATTTA
26699093 AA
1 AA
26699095 TACGCTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 4 0.22
18 9 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAATTTAAAAATTTA
Found at i:26707871 original size:46 final size:46
Alignment explanation
Indices: 26707821--26707997 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
26707811 ATGGTTGAGC
26707821 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
* * *
26707867 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T
*
26707910 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 ----ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
** * * **
26707960 GCCCGAGCTCGTTGAATTGAGTCCGAGTTTGCTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26707998 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 62 0.57
47 30 0.28
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:26707980 original size:93 final size:93
Alignment explanation
Indices: 26707819--26707988 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
26707809 GGATGGTTGA
* * *
26707819 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAAT
26707884 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26707912 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAAT
26707977 TGAGTCCGAGTT
66 TGAGTCCGAGTT
26707989 TGCTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26709531 original size:22 final size:22
Alignment explanation
Indices: 26709506--26709551 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
26709496 GAATAGGTTC
26709506 TATACATACCTGTATCGCCTCG
1 TATACATACCTGTATCGCCTCG
*
26709528 TATACATACCTGTATTGCCTCG
1 TATACATACCTGTATCGCCTCG
26709550 TA
1 TA
26709552 CTAACCTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (22 bp):
TATACATACCTGTATCGCCTCG
Found at i:26713421 original size:27 final size:26
Alignment explanation
Indices: 26713320--26713443 Score: 108
Period size: 26 Copynumber: 4.7 Consensus size: 26
26713310 TTTAGTTTAC
* * *
26713320 TAAAATTACTGAAATACCCCCAGTTG
1 TAAAATTACCGAAATACCCCGATTTG
*
26713346 TAAAATTACC-AAAGTACCCCGATTTA
1 TAAAATTACCGAAA-TACCCCGATTTG
* * *
26713372 TAAAATTACCCAAATATTCTCGATTTG
1 TAAAATTACCGAAATA-CCCCGATTTG
*
26713399 TAAAATTACCGAAATACCGTCGA-TTG
1 TAAAATTACCGAAATACC-CCGATTTG
* **
26713425 AAAAATTACTAAAATACCC
1 TAAAATTACCGAAATACCC
26713444 TTGTAAGGTA
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
25 3 0.04
26 49 0.60
27 29 0.36
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (26 bp):
TAAAATTACCGAAATACCCCGATTTG
Found at i:26713468 original size:27 final size:27
Alignment explanation
Indices: 26713428--26713649 Score: 302
Period size: 27 Copynumber: 8.2 Consensus size: 27
26713418 TCGATTGAAA
* * *
26713428 AATTACTAAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
26713455 AAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
26713482 AATTACAGAAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
26713509 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
26713536 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
26713563 AAATACTGAAATATTCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
26713590 AATTACTAAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
26713617 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
26713644 AATTAC
1 AATTAC
26713650 CGAGACCATT
Statistics
Matches: 169, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 168 0.99
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:26713733 original size:20 final size:20
Alignment explanation
Indices: 26713686--26713724 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26713676 AAATGACTGT
*
26713686 GTACCGTTATTGTGGGCTTC
1 GTACCGATATTGTGGGCTTC
*
26713706 GTATCGATATTGTGGGCTT
1 GTACCGATATTGTGGGCTT
26713725 TGTGCCGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.15, G:0.31, T:0.41
Consensus pattern (20 bp):
GTACCGATATTGTGGGCTTC
Found at i:26713778 original size:22 final size:22
Alignment explanation
Indices: 26713750--26713808 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
26713740 CCCGTTATCG
26713750 ATGGCTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
26713772 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
26713794 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
26713809 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26718438 original size:25 final size:24
Alignment explanation
Indices: 26718410--26718456 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
26718400 AGGGGAATAG
26718410 GGGAAGGAA-ATGAGGAAAAATGAAA
1 GGGAAGGAAGA-GA-GAAAAATGAAA
*
26718435 GGGAATGAAGAGAGAAAAATGA
1 GGGAAGGAAGAGAGAAAAATGA
26718457 GAGAGAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 10 0.50
26 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.36, T:0.09
Consensus pattern (24 bp):
GGGAAGGAAGAGAGAAAAATGAAA
Found at i:26718452 original size:24 final size:25
Alignment explanation
Indices: 26718424--26718472 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
26718414 AGGAAATGAG
*
26718424 GAAAAATGAAAG-GGAATGAAGAGA
1 GAAAAATGAAAGAGAAATGAAGAGA
*
26718448 GAAAAATGAGAGAGAAATGAAGAGA
1 GAAAAATGAAAGAGAAATGAAGAGA
26718473 TGACAAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.33, T:0.08
Consensus pattern (25 bp):
GAAAAATGAAAGAGAAATGAAGAGA
Found at i:26721564 original size:19 final size:19
Alignment explanation
Indices: 26721540--26721577 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26721530 ATTCGAGATA
26721540 GAAATAATTAATTTATTAT
1 GAAATAATTAATTTATTAT
26721559 GAAATAATTAATTTATTAT
1 GAAATAATTAATTTATTAT
26721578 CATTTTAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
GAAATAATTAATTTATTAT
Found at i:26736227 original size:46 final size:44
Alignment explanation
Indices: 26736127--26736234 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
26736117 TGTCTTTGAC
** * * *
26736127 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
* *
26736171 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATA--TATAAT
26736217 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
26736235 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
Found at i:26747679 original size:39 final size:39
Alignment explanation
Indices: 26747626--26747739 Score: 138
Period size: 39 Copynumber: 2.9 Consensus size: 39
26747616 CCGGACATAT
** * *
26747626 TTCCAGCATGTAGCCTGCAGACCTTAAGTCCAGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
* * * *
26747665 TTCCCGCACATAGCCTACGGTCTTTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
* *
26747704 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATA
26747740 AATATCACTG
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
Done.