Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 90 of 349
Found at i:27137770 original size:18 final size:19
Alignment explanation
Indices: 27137736--27137793 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 19
27137726 CTATAATGTT
*
27137736 TTTGTGTCGTACT-CTGCC
1 TTTGTGGCGTACTGCTGCC
27137754 TTTGTGGCGTATGCTGCAATGCC
1 TTTGTGGCGTA--CTGC--TGCC
27137777 TTTGTGGCGTA-TGCTGC
1 TTTGTGGCGTACTGCTGC
27137794 AATGCCTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
18 13 0.38
20 5 0.15
21 1 0.03
23 15 0.44
ACGTcount: A:0.09, C:0.22, G:0.29, T:0.40
Consensus pattern (19 bp):
TTTGTGGCGTACTGCTGCC
Found at i:27137780 original size:23 final size:23
Alignment explanation
Indices: 27137750--27137829 Score: 133
Period size: 23 Copynumber: 3.5 Consensus size: 23
27137740 TGTCGTACTC
27137750 TGCCTTTGTGGCGTATGCTGCAA
1 TGCCTTTGTGGCGTATGCTGCAA
27137773 TGCCTTTGTGGCGTATGCTGCAA
1 TGCCTTTGTGGCGTATGCTGCAA
* * *
27137796 TGCCTTTATGGCGTATTCTACAA
1 TGCCTTTGTGGCGTATGCTGCAA
27137819 TGCCTTTGTGG
1 TGCCTTTGTGG
27137830 TATGTAACAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.14, C:0.21, G:0.28, T:0.38
Consensus pattern (23 bp):
TGCCTTTGTGGCGTATGCTGCAA
Found at i:27145864 original size:23 final size:23
Alignment explanation
Indices: 27145835--27145940 Score: 113
Period size: 23 Copynumber: 4.6 Consensus size: 23
27145825 AAGTTACTTA
*
27145835 CAATGCCTTTGTGGCGTATTTTG
1 CAATGCCTTTGTGGCGTATTCTG
* * * *
27145858 TAATGCCTTTGTGACATATTCTA
1 CAATGCCTTTGTGGCGTATTCTG
* * *
27145881 CAATTCCTTTATGGCTTATTCTG
1 CAATGCCTTTGTGGCGTATTCTG
* * *
27145904 CAATACTTTTGTGGCGTGTTCTG
1 CAATGCCTTTGTGGCGTATTCTG
27145927 CAATGCCTTTGTGG
1 CAATGCCTTTGTGG
27145941 TAAGTTCTGT
Statistics
Matches: 65, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (23 bp):
CAATGCCTTTGTGGCGTATTCTG
Found at i:27147552 original size:22 final size:21
Alignment explanation
Indices: 27147504--27147552 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
27147494 ACATTTAAAC
* *
27147504 ATACATCTCATACATAATCAT
1 ATACATCTCATAAACAATCAT
*
27147525 AAACATCTCATATAACAATCAT
1 ATACATCTCATA-AACAATCAT
*
27147547 CTACAT
1 ATACAT
27147553 ATGTATCATC
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (21 bp):
ATACATCTCATAAACAATCAT
Found at i:27151860 original size:15 final size:15
Alignment explanation
Indices: 27151840--27151869 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27151830 TTCATTTATA
27151840 CTCACAAATCATGTG
1 CTCACAAATCATGTG
27151855 CTCACAAATCATGTG
1 CTCACAAATCATGTG
27151870 TGTCTCTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (15 bp):
CTCACAAATCATGTG
Found at i:27152470 original size:24 final size:24
Alignment explanation
Indices: 27152410--27152503 Score: 75
Period size: 24 Copynumber: 3.8 Consensus size: 24
27152400 AAAAGGGTTA
* *
27152410 TAAAAATATG-AAAGATAAAGAAT
1 TAAAAAAATGAAAAGAGAAAGAAT
27152433 TAAGAAAAAT-AAAAGAGAAAGAAT
1 TAA-AAAAATGAAAAGAGAAAGAAT
* * *
27152457 TAAAAAGATGAAAAGTGAAATGTTGAT
1 TAAAAAAATGAAAAGAGAAA-G--AAT
* *
27152484 TATAAAAATGAAAAGTGAAA
1 TAAAAAAATGAAAAGAGAAA
27152504 TGTTGATTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
23 8 0.14
24 29 0.50
25 1 0.02
27 20 0.34
ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20
Consensus pattern (24 bp):
TAAAAAAATGAAAAGAGAAAGAAT
Found at i:27152485 original size:27 final size:27
Alignment explanation
Indices: 27152455--27152515 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
27152445 AAGAGAAAGA
27152455 ATTA-AAAAGATGAAAAGTGAAATGTTG
1 ATTATAAAA-ATGAAAAGTGAAATGTTG
27152482 ATTATAAAAATGAAAAGTGAAATGTTG
1 ATTATAAAAATGAAAAGTGAAATGTTG
27152509 ATTATAA
1 ATTATAA
27152516 TGAATATCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (27 bp):
ATTATAAAAATGAAAAGTGAAATGTTG
Found at i:27156770 original size:47 final size:47
Alignment explanation
Indices: 27156701--27156798 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
27156691 GTATCTCATA
* *
27156701 TTAATATACAATGACTAATTTTTAACAATATAAATTAATGAAAAATT
1 TTAATATACAATGACTAATTTTTAACAATAAAAATAAATGAAAAATT
27156748 TTAATATACAATGACTAATTTTTAACAATAAAAATAAATGAAAAATT
1 TTAATATACAATGACTAATTTTTAACAATAAAAATAAATGAAAAATT
27156795 TTAA
1 TTAA
27156799 CAGAAAGATT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.37
Consensus pattern (47 bp):
TTAATATACAATGACTAATTTTTAACAATAAAAATAAATGAAAAATT
Found at i:27175641 original size:56 final size:56
Alignment explanation
Indices: 27175553--27175712 Score: 239
Period size: 56 Copynumber: 2.9 Consensus size: 56
27175543 CCATGGCATC
* * * *
27175553 GATATATGTGAGCCAGTAAGACCACATTTAGTACGTTGGCATCGATATGTGATTTT
1 GATATATGTGTGCAAGTTAGACCACATCTAGTACGTTGGCATCGATATGTGATTTT
* * *
27175609 GATATATGTGTGCAAGTTAGAGCACATCTAGTACGTTGACATCGATATTTGATTTT
1 GATATATGTGTGCAAGTTAGACCACATCTAGTACGTTGGCATCGATATGTGATTTT
* *
27175665 GATATATGTGTGCGAGTTAGACCACGTCTAGTACGTTGGCATCGATAT
1 GATATATGTGTGCAAGTTAGACCACATCTAGTACGTTGGCATCGATAT
27175713 ATGTGGTTAC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 93 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (56 bp):
GATATATGTGTGCAAGTTAGACCACATCTAGTACGTTGGCATCGATATGTGATTTT
Found at i:27176284 original size:15 final size:15
Alignment explanation
Indices: 27176266--27176298 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
27176256 ACGAATTTGA
27176266 TTTATGTGAATTAGG
1 TTTATGTGAATTAGG
*
27176281 TTTATGTGAATTTGG
1 TTTATGTGAATTAGG
27176296 TTT
1 TTT
27176299 TTGGATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (15 bp):
TTTATGTGAATTAGG
Found at i:27181828 original size:22 final size:20
Alignment explanation
Indices: 27181803--27181844 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
27181793 TGATTATCTC
27181803 ATTAATGAATGATGTAGTTTTG
1 ATTAATGAATGAT-TA-TTTTG
27181825 ATTAATGAATGATTATTTTG
1 ATTAATGAATGATTATTTTG
27181845 TTTAGCTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 2 0.10
22 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (20 bp):
ATTAATGAATGATTATTTTG
Found at i:27182445 original size:70 final size:69
Alignment explanation
Indices: 27182346--27182532 Score: 230
Period size: 70 Copynumber: 2.7 Consensus size: 69
27182336 AAATTTTGGC
* * ** *
27182346 GTTGTGGTGAGATGTTAAATGAATAAAGTATTGGTGTTGTGGTAGGACATTACATGAATAAAGTA
1 GTTGTGGTGA-ATGTTAATTGAATGAAGTATCAGTGTTGTGGTAGGACATTAAATGAATAAAGTA
*
27182411 ACGGT
65 ACGAT
* * *
27182416 GTTGTGGTGGAATGTTAATTGAATGAAGTATCAGTGTTGTGGTGGGGCATTAAATGAATGAAGTA
1 GTTGTGGT-GAATGTTAATTGAATGAAGTATCAGTGTTGTGGTAGGACATTAAATGAATAAAGTA
27182481 ACGAT
65 ACGAT
* * * *
27182486 GTTGTGGCAGAATGTTACTTGATTGAAGTATCAATGTTGTGGTAGGA
1 GTTGTGG-TGAATGTTAATTGAATGAAGTATCAGTGTTGTGGTAGGA
27182533 TGTTTATTGA
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
70 98 0.98
71 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.34
Consensus pattern (69 bp):
GTTGTGGTGAATGTTAATTGAATGAAGTATCAGTGTTGTGGTAGGACATTAAATGAATAAAGTAA
CGAT
Found at i:27182549 original size:35 final size:35
Alignment explanation
Indices: 27182346--27182551 Score: 139
Period size: 35 Copynumber: 5.9 Consensus size: 35
27182336 AAATTTTGGC
* * ***
27182346 GTTGTGGT-GAGATGTTAAATGAATAAAGTATTGGT
1 GTTGTGGTAG-GATGTTAATTGAATGAAGTATCAAT
** * * **
27182381 GTTGTGGTAGGACATTACA-TGAATAAAGTAACGGT
1 GTTGTGGTAGGATGTTA-ATTGAATGAAGTATCAAT
*
27182416 GTTGTGGT-GGAATGTTAATTGAATGAAGTATCAGT
1 GTTGTGGTAGG-ATGTTAATTGAATGAAGTATCAAT
* *** * * *
27182451 GTTGTGGTGGGGCATTAAATGAATGAAGTAACGAT
1 GTTGTGGTAGGATGTTAATTGAATGAAGTATCAAT
* * * *
27182486 GTTGTGGCAGAATGTTACTTGATTGAAGTATCAAT
1 GTTGTGGTAGGATGTTAATTGAATGAAGTATCAAT
* *
27182521 GTTGTGGTAGGATGTTTATTGAAAGAAGTAT
1 GTTGTGGTAGGATGTTAATTGAATGAAGTAT
27182552 TGGTATTTGT
Statistics
Matches: 133, Mismatches: 33, Indels: 10
0.76 0.19 0.06
Matches are distributed among these distances:
34 3 0.02
35 126 0.95
36 4 0.03
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.34
Consensus pattern (35 bp):
GTTGTGGTAGGATGTTAATTGAATGAAGTATCAAT
Found at i:27187801 original size:17 final size:18
Alignment explanation
Indices: 27187770--27187803 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
27187760 CATGTGGCCT
27187770 ACCCGTGTAGGCCTACAA
1 ACCCGTGTAGGCCTACAA
27187788 ACCCGTGT-GGCCTACA
1 ACCCGTGTAGGCCTACA
27187804 CGGCCCAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.24, C:0.35, G:0.24, T:0.18
Consensus pattern (18 bp):
ACCCGTGTAGGCCTACAA
Found at i:27187891 original size:17 final size:18
Alignment explanation
Indices: 27187854--27187900 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
27187844 GCCTAGAATT
*
27187854 CCACACACCCATGTGGGC
1 CCACACGCCCATGTGGGC
*
27187872 CCACACGCCCGTGT-GGC
1 CCACACGCCCATGTGGGC
27187889 CCACACGGCCCA
1 CCACAC-GCCCA
27187901 ATTGGTTGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.19, C:0.49, G:0.23, T:0.09
Consensus pattern (18 bp):
CCACACGCCCATGTGGGC
Found at i:27193189 original size:21 final size:21
Alignment explanation
Indices: 27193163--27193202 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
27193153 AACTCGAGCC
27193163 CCTCTACG-ACCCCTACCACGG
1 CCTCTA-GTACCCCTACCACGG
*
27193184 CCTCTAGTACCCCTTCCAC
1 CCTCTAGTACCCCTACCAC
27193203 AAGTACCACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.17, C:0.53, G:0.10, T:0.20
Consensus pattern (21 bp):
CCTCTAGTACCCCTACCACGG
Found at i:27203869 original size:5 final size:5
Alignment explanation
Indices: 27203861--27203885 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
27203851 AGTAAATTAA
27203861 AACAT AACAT AACAT AACAT AACAT
1 AACAT AACAT AACAT AACAT AACAT
27203886 GCACAAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AACAT
Found at i:27223131 original size:17 final size:17
Alignment explanation
Indices: 27223109--27223143 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
27223099 TTAATATGTG
27223109 ATATCAAAGAGGATAGA
1 ATATCAAAGAGGATAGA
27223126 ATATCAAAGAGGATAGA
1 ATATCAAAGAGGATAGA
27223143 A
1 A
27223144 GGATGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (17 bp):
ATATCAAAGAGGATAGA
Found at i:27226414 original size:29 final size:29
Alignment explanation
Indices: 27226382--27226439 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
27226372 TGCTTAGGAA
27226382 TGATTATTTAAATATGTGAATGATTATAT
1 TGATTATTTAAATATGTGAATGATTATAT
27226411 TGATTATTTAAATATGTGAATGATTATAT
1 TGATTATTTAAATATGTGAATGATTATAT
27226440 AACTATACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (29 bp):
TGATTATTTAAATATGTGAATGATTATAT
Found at i:27240628 original size:132 final size:131
Alignment explanation
Indices: 27240337--27241138 Score: 893
Period size: 132 Copynumber: 6.1 Consensus size: 131
27240327 ATGTAATTTT
* ** ** *
27240337 AGGGAGA-AGAGATTTACAATCTTCAGCCTATTCCACTACTATTCAAGGAGACAAGGCTAGTGGC
1 AGGGAGATA-AGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGC
* * * * ** * * * * *
27240401 TTAAATATGCTTCCTTACTGCCTTAGAAAAATAAGATT--CGCCTTCAATCTGCTCCATTGCTGC
65 TTAAATCTGCTCCCTTACTACCTCAGGGAGATAAGATTCCCGTCTTCGATCTGCTCCACTACTGC
27240464 TC
130 TC
*
27240466 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGTT
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
* * *
27240531 TAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCGATATGCTCCACTACTGC
66 TAAATCTGCTCCCTTACTACCTCAGGGAGATAAGATTC-CCGTCTTCGATCTGCTCCACTACTGC
*
27240596 TT
130 TC
* * * * *
27240598 AGGGAGATAAGATTTACAATCTTCGGCCTGCTCCATTGCTGCTCAGGGAGATAAGGCTAGTGGCT
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
* * * * *
27240663 TAAATTTGCTTCCC-TACTACCTC-GGGAAAATAATATT--CGCCTTCGATCTGCTTCACTACTG
66 TAAATCTGC-TCCCTTACTACCTCAGGG-AGATAAGATTCCCGTCTTCGATCTGCTCCACTACTG
27240724 CTC
129 CTC
27240727 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
* * * *
27240792 TAAATCTGCTCCCTTGCTACCTTAGGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTATTGC
66 TAAATCTGCTCCCTTACTACCTCAGGGAGATAAGATTC-CCGTCTTCGATCTGCTCCACTACTGC
*
27240857 TT
130 TC
* * *
27240859 AGGGAGATAATATCTACAATCTTCAGCCTGCTCCACTACTGCTGAGGGAGATAAGGCTAGTGGCT
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
* * * *
27240924 TAAATCTGCTTCCC-TACTACCTC-GGGAAGATAAGATTCGCCATTTTTGATCTGCTCCACTGCT
66 TAAATCTGC-TCCCTTACTACCTCAGGG-AGATAAGATTC-CCGTCTTCGATCTGCTCCACTACT
*
27240987 ACTC
128 GCTC
* ** * * * *
27240991 AGGGAGATAAGATTTACAATCTTCAGCCTATTCCACTGCTGCTTAGAGAGACAAGACTAGTGGCT
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
* * * * * * * *
27241056 TAAATCTACTCCCTTGCTAACTCAGGGAGATAAGATTTTCCATCTCCGATCTGCTCCATTACTAC
66 TAAATCTGCTCCCTTACTACCTCAGGGAGATAAGA-TTCCCGTCTTCGATCTGCTCCACTACT-G
27241121 CTC
129 CTC
* *
27241124 ATGAAGATAAGATCT
1 AGGGAGATAAGATCT
27241139 GTGAATTTAC
Statistics
Matches: 569, Mismatches: 87, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
128 4 0.01
129 190 0.33
130 4 0.01
131 10 0.02
132 333 0.59
133 28 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (131 bp):
AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
TAAATCTGCTCCCTTACTACCTCAGGGAGATAAGATTCCCGTCTTCGATCTGCTCCACTACTGCT
C
Found at i:27240773 original size:44 final size:44
Alignment explanation
Indices: 27240442--27240913 Score: 220
Period size: 44 Copynumber: 10.8 Consensus size: 44
27240432 TAAGATTCGC
* * * *
27240442 CTTCAATCTGCTCCATTGCTGCTCAGGGAGATAAGATCTACAAT
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAGT
* * * **
27240486 CTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAG-GCTAGTGGT
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTA-CAGT
* * * * * *
27240530 -TTAAATCTACTCC-CTTGCTACCTCAGGGAGATAAGAT-TCACCGT
1 CTTCAGTCTGCTCCAC-TACT-GCTCAGGGAGATAAGATCT-ACAGT
* * * *
27240574 CTTC-GATATGCTCCACTACTGCTTAGGGAGATAAGATTTACAAT
1 CTTCAG-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAGT
* * * * * ** *
27240618 CTTCGGCCTGCTCCATTGCTGCTCAGGGAGATAAG-GCTAGTGG
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAGT
* * * * * * *
27240661 CTTAAATTTGCTTCC-CTACTACCTC-GGGAAAATAATAT-T-C-GC
1 CTTCAGTCTGC-TCCACTACT-GCTCAGGG-AGATAAGATCTACAGT
* *
27240703 CTTC-GATCTGCTTCACTACTGCTCAGGGAGATAAGATCTACAAT
1 CTTCAG-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAGT
* * * ** *
27240747 CTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAG-GCTAGTGG
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAGT
* * * * * * *
27240790 CTTAAATCTGCTCC-CTTGCTACCTTAGGGAGATAAGAT-TCGCTGT
1 CTTCAGTCTGCTCCAC-TACT-GCTCAGGGAGATAAGATCT-ACAGT
* * * *
27240835 CTTC-GATCTGCTCCACTATTGCTTAGGGAGATAATATCTACAAT
1 CTTCAG-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAGT
* *
27240879 CTTCAGCCTGCTCCACTACTGCTGAGGGAGATAAG
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAG
27240914 GCTAGTGGCT
Statistics
Matches: 306, Mismatches: 93, Indels: 58
0.67 0.20 0.13
Matches are distributed among these distances:
41 12 0.04
42 19 0.06
43 47 0.15
44 194 0.63
45 32 0.10
46 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAGT
Found at i:27240806 original size:261 final size:261
Alignment explanation
Indices: 27240335--27241092 Score: 1095
Period size: 261 Copynumber: 2.9 Consensus size: 261
27240325 CAATGTAATT
** ** * *
27240335 TTAGGGAGA-AGAGATTTACAATCTTCAGCCTATTCCACTACTATTCAAGGAGACAAGGCTAGTG
1 TTAGGGAGATA-AGATTTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTG
* * ** * * *
27240399 GCTTAAATATGCTTCCTTACTGCCTTAGAAAAATAAGATTCGCCTTCAATCTGCTCCATTGCTGC
65 GCTTAAATATGCTTCCCTACTACCTCGGGAAAATAAGATTCGCCTTCGATCTGCTCCACTGCTGC
27240464 TCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGG
130 TCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGG
*
27240529 TTTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCGATATGCTCCACTACT
195 CTTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCGATATGCTCCACTACT
27240594 GC
260 GC
* * *
27240596 TTAGGGAGATAAGATTTACAATCTTCGGCCTGCTCCATTGCTGCTCAGGGAGATAAGGCTAGTGG
1 TTAGGGAGATAAGATTTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGG
* * * *
27240661 CTTAAATTTGCTTCCCTACTACCTCGGGAAAATAATATTCGCCTTCGATCTGCTTCACTACTGCT
66 CTTAAATATGCTTCCCTACTACCTCGGGAAAATAAGATTCGCCTTCGATCTGCTCCACTGCTGCT
27240726 CAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGC
131 CAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGC
* * * * * *
27240791 TTAAATCTGCTCCCTTGCTACCTTAGGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTATTG
196 TTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCGATATGCTCCACTACTG
27240856 C
261 C
* * *
27240857 TTAGGGAGATAATATCTACAATCTTCAGCCTGCTCCACTACTGCTGAGGGAGATAAGGCTAGTGG
1 TTAGGGAGATAAGATTTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGG
* * *
27240922 CTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATTTTTGATCTGCTCCACTGCT
66 CTTAAATATGCTTCCCTACTACCTCGGGAAAATAAGATTCGCC---TTCGATCTGCTCCACTGCT
* * ** * * * *
27240987 ACTCAGGGAGATAAGATTTACAATCTTCAGCCTATTCCACTGCTGCTTAGAGAGACAAGACTAGT
128 GCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGT
*
27241052 GGCTTAAATCTACTCCCTTGCTAACTCAGGGAGATAAGATT
193 GGCTTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATT
27241093 TTCCATCTCC
Statistics
Matches: 443, Mismatches: 50, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
261 331 0.75
262 1 0.00
264 111 0.25
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (261 bp):
TTAGGGAGATAAGATTTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGG
CTTAAATATGCTTCCCTACTACCTCGGGAAAATAAGATTCGCCTTCGATCTGCTCCACTGCTGCT
CAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGC
TTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCGATATGCTCCACTACTG
C
Found at i:27255412 original size:24 final size:24
Alignment explanation
Indices: 27255385--27255435 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
27255375 TAGCCAGTTC
*
27255385 TTCTTGCATCT-GTGTTTGCATCTG
1 TTCTTGCATCTCCT-TTTGCATCTG
*
27255409 TTCTTGCATTTCCTTTTGCATCTG
1 TTCTTGCATCTCCTTTTGCATCTG
27255433 TTC
1 TTC
27255436 CAACCTTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.08, C:0.24, G:0.16, T:0.53
Consensus pattern (24 bp):
TTCTTGCATCTCCTTTTGCATCTG
Found at i:27255415 original size:12 final size:12
Alignment explanation
Indices: 27255385--27255435 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
27255375 TAGCCAGTTC
27255385 TTCTTGCATCTG
1 TTCTTGCATCTG
27255397 TGT-TTGCATCTG
1 T-TCTTGCATCTG
* *
27255409 TTCTTGCATTTCC
1 TTCTTGCATCT-G
27255422 TT-TTGCATCTG
1 TTCTTGCATCTG
27255433 TTC
1 TTC
27255436 CAACCTTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
11 3 0.10
12 25 0.81
13 3 0.10
ACGTcount: A:0.08, C:0.24, G:0.16, T:0.53
Consensus pattern (12 bp):
TTCTTGCATCTG
Found at i:27255444 original size:24 final size:24
Alignment explanation
Indices: 27255399--27255445 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
27255389 TGCATCTGTG
***
27255399 TTTGCATCTGTTCTTGCATTTCCT
1 TTTGCATCTGTTCCAACATTTCCT
*
27255423 TTTGCATCTGTTCCAACCTTTCC
1 TTTGCATCTGTTCCAACATTTCC
27255446 AATTTTTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.30, G:0.11, T:0.49
Consensus pattern (24 bp):
TTTGCATCTGTTCCAACATTTCCT
Found at i:27259327 original size:17 final size:16
Alignment explanation
Indices: 27259307--27259346 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
27259297 TAGATAGAAT
27259307 ATAAAAAATAATATATA
1 ATAAAAAA-AATATATA
27259324 ATAAATAAAAATATATA
1 ATAAA-AAAAATATATA
27259341 ATAAAA
1 ATAAAA
27259347 TAACTTGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.05
17 18 0.82
18 3 0.14
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAAAAAAATATATA
Found at i:27259348 original size:22 final size:20
Alignment explanation
Indices: 27259310--27259349 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
27259300 ATAGAATATA
*
27259310 AAAAATAATATATAATAAAT
1 AAAAATAATATAAAATAAAT
27259330 AAAAATATATAATAAAATAA
1 AAAAATA-AT-ATAAAATAA
27259350 CTTGATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 2 0.12
22 8 0.47
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAATAATATAAAATAAAT
Found at i:27263964 original size:3 final size:3
Alignment explanation
Indices: 27263956--27263991 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
27263946 TGAATTGCAA
27263956 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
27263992 GAAATTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:27271543 original size:27 final size:27
Alignment explanation
Indices: 27271503--27271558 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
27271493 AACATGTCAG
*
27271503 GAAAGAAAAGCCTTTTTGGCGTAA-CAT
1 GAAAGAAAAGCCTTTGTGGCG-AATCAT
*
27271530 GAAAGAAAATCCTTTGTGGCGAATCAT
1 GAAAGAAAAGCCTTTGTGGCGAATCAT
27271557 GA
1 GA
27271559 TATGGAAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGCGAATCAT
Found at i:27274051 original size:56 final size:56
Alignment explanation
Indices: 27274004--27274138 Score: 252
Period size: 56 Copynumber: 2.4 Consensus size: 56
27273994 CTTACTTGTG
*
27274004 CACATATATCGGAATCACATATCGATGGCAACGTATTAAACGTGGTCTTACTCGCA
1 CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
27274060 CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
1 CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
*
27274116 CATATATATCGGAATCACATATC
1 CACATATATCGGAATCACATATC
27274139 ACAAGTCGAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (56 bp):
CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
Found at i:27277162 original size:21 final size:21
Alignment explanation
Indices: 27277125--27277164 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
27277115 TTCTAAATAA
*
27277125 TTTTGTTTCTTTTATTTTTAT
1 TTTTATTTCTTTTATTTTTAT
27277146 TTTTATTT-TTTTAATTTTT
1 TTTTATTTCTTTT-ATTTTT
27277165 TTATTGGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (21 bp):
TTTTATTTCTTTTATTTTTAT
Found at i:27279976 original size:13 final size:13
Alignment explanation
Indices: 27279955--27280012 Score: 80
Period size: 13 Copynumber: 4.5 Consensus size: 13
27279945 AAATTTTTCC
27279955 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
27279968 AAAGTACTTCTCA
1 AAAGCACTTCTCA
*
27279981 AAAGCACTTCTCT
1 AAAGCACTTCTCA
* *
27279994 ACAGCACTTTTCA
1 AAAGCACTTCTCA
27280007 AAAGCA
1 AAAGCA
27280013 ATGAAGAACT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.38, C:0.28, G:0.09, T:0.26
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:27293887 original size:29 final size:28
Alignment explanation
Indices: 27293855--27293912 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
27293845 TAATTGTTCT
*
27293855 AAATCATTTTATATATTATATTATTTTAA
1 AAATCATTTTACATATTA-ATTATTTTAA
* *
27293884 AAATCATTTTGCATATTAATTGTTTTAA
1 AAATCATTTTACATATTAATTATTTTAA
27293912 A
1 A
27293913 TTATTTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 10 0.38
29 16 0.62
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (28 bp):
AAATCATTTTACATATTAATTATTTTAA
Found at i:27297732 original size:19 final size:19
Alignment explanation
Indices: 27297708--27297752 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
27297698 AACGCCTTTT
*
27297708 TGCATT-CACTACATGCATC
1 TGCATTACACTACAT-CATA
*
27297727 TGCATTACATTACATCATA
1 TGCATTACACTACATCATA
27297746 TGCATTA
1 TGCATTA
27297753 AAGTCCATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (19 bp):
TGCATTACACTACATCATA
Found at i:27297920 original size:12 final size:12
Alignment explanation
Indices: 27297903--27297941 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
27297893 GAAAAAGGAT
27297903 ATGCAAGAGCAA
1 ATGCAAGAGCAA
*
27297915 ATGCAAGCA-CAG
1 ATGCAAG-AGCAA
27297927 ATGCAAGAGCAA
1 ATGCAAGAGCAA
27297939 ATG
1 ATG
27297942 GTTAAGATCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 1 0.04
12 21 0.91
13 1 0.04
ACGTcount: A:0.46, C:0.18, G:0.26, T:0.10
Consensus pattern (12 bp):
ATGCAAGAGCAA
Found at i:27301254 original size:37 final size:37
Alignment explanation
Indices: 27301204--27301282 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27301194 TTATTACGAA
* * *
27301204 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27301241 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27301278 GTCTT
1 GTCTT
27301283 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27301479 original size:47 final size:47
Alignment explanation
Indices: 27301401--27301576 Score: 246
Period size: 47 Copynumber: 3.7 Consensus size: 47
27301391 CCCTTCGGGA
* * * * *
27301401 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * *
27301448 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
27301495 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
27301542 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
27301577 AGAATCCTAA
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 115 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:27310089 original size:44 final size:43
Alignment explanation
Indices: 27309996--27310557 Score: 198
Period size: 44 Copynumber: 12.7 Consensus size: 43
27309986 AAACGACAAA
* * ****
27309996 TCTTATCTTCCC-GAGGTAGCAAGGGAGCAGATTTTAGCCACTAG
1 TCTTATC-TCCCTGAGGTAGCAAGGGAGCAGA-CTAAGATTGTAG
*
27310040 CCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTAATGATTGTAG
1 TCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTAA-GATTGTAG
** * *
27310084 TCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAGATTGCAG
1 TCTTATCTCCCTGAGGTAGCAAGGGAGCAGACT-AAGATTGTAG
* * * * ** * * * *
27310128 ATTTTATCTCGCTCAGATAGCAACAGAGCAGATCGAAGATGGAAAA
1 -TCTTATCTCCCTGAGGTAGCAAGGGAGCAGA-CTAAGATTG-TAG
* * ****
27310174 TCTTATCTTCCC--AGGTAGC-AGGAGAGCAGATTTTAGCCACTAG
1 TCTTATC-TCCCTGAGGTAGCAAGG-GAGCAGA-CTAAGATTGTAG
* * * *
27310217 CCTTATCTTCCTGAGGTAGCGAGGGAGCAGGCTAATGATTGTAG
1 TCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTAA-GATTGTAG
* * *
27310261 TCTTATCTTCCTGAGGTA--AAGACGGAGCAGACTAAAGATGGTAAA
1 TCTTATCTCCCTGAGGTAGCAAG--GGAGCAGACT-AAGATTGT-AG
* * *
27310306 TCTTATCTCCCTGA-GCAGC-AGTGGAGCAGATCGGAGACGA-TG-AA
1 TCTTATCTCCCTGAGGTAGCAAG-GGAGCAGA-C-TA-A-GATTGTAG
* * * * * *****
27310350 TCTTATCTTCCC-AAGGTAACAGGGGAGCAGATTTTAGCCACCAG
1 TCTTATC-TCCCTGAGGTAGCAAGGGAGCAGA-CTAAGATTGTAG
* * * * * *
27310394 CCTTATCTTCCTGAGGTAGCAAGGGAGTAGGCCGAAAATTGTAG
1 TCTTATCTCCCTGAGGTAGCAAGGGAGCA-GACTAAGATTGTAG
* * * *
27310438 TCTTATCTTCTTGAGGTAGCAAGGGAGCAG-GTCGAGAATTGTTA-
1 TCTTATCTCCCTGAGGTAGCAAGGGAGCAGACT-AAG-ATTG-TAG
*** * *
27310482 TCTTATCTTTTTGAGGTAGCAAGGAAGTAGACTGAAGATTGTAG
1 TCTTATCTCCCTGAGGTAGCAAGGGAGCAGACT-AAGATTGTAG
*
27310526 ATCTTATCTTCCC-GAGGTAGTAAGGGAGCAGA
1 -TCTTATC-TCCCTGAGGTAGCAAGGGAGCAGA
27310558 TTTTAGCCAC
Statistics
Matches: 379, Mismatches: 103, Indels: 71
0.69 0.19 0.13
Matches are distributed among these distances:
42 6 0.02
43 24 0.06
44 233 0.61
45 105 0.28
46 9 0.02
47 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTAAGATTGTAG
Found at i:27310532 original size:177 final size:174
Alignment explanation
Indices: 27309994--27310583 Score: 601
Period size: 177 Copynumber: 3.3 Consensus size: 174
27309984 AAAAACGACA
27309994 AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
1 AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
* *
27310059 CAAGGGAGCAGACTAATGATTGTAGTCTTATCTT-TCTGAGGTAGCAAGGAAGCAGACTGAAGAT
66 CAAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCT-TGAGGTAGCAAGGGAGCAGAC-GAAGAT
* * * * * * *
27310123 TGCAGATTTTATCTCGCTCAGATAGCAA-CAGAGCAGA-TCGAAGATGG
129 TGTA-ATCTTATCTCCCTGAGGTAGCAAGGA-AGCAGACT-GAAGATTG
*
27310170 AAAATCTTATCTTCCC-AGGTAGC-AGGAGAGCAGATTTTAGCCACTAGCCTTATCTTCCTGAGG
1 --AATCTTATCTTCCCGAGGTAGCAAGG-GAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGG
* * *
27310233 TAGCGAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCCTGAGGTA--AAGACGGAGCAGACTAA
63 TAGCAAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCTTGAGGTAGCAAG--GGAGCAGAC-GA
* * * *
27310296 AGATGGTAAATCTTATCTCCCTGA-GCAGC-AGTGGAGCAGATCGGAGACGA-TG
125 AGATTGT-AATCTTATCTCCCTGAGGTAGCAAG-GAAGCAGA-CTGA-A-GATTG
* * * * *
27310348 AATCTTATCTTCCCAAGGTAACAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAGGTAG
1 AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
* * * *
27310413 CAAGGGAGTAGGCCGAA-AATTGTAGTCTTATCTTCTTGAGGTAGCAAGGGAGCAGGTCG-AGAA
66 CAAGGGAGCAGG-CTAATGATTGTAGTCTTATCTTCTTGAGGTAGCAAGGGAGCA-GACGAAG-A
* *** *
27310476 TTGTTATCTTATCTTTTTGAGGTAGCAAGGAAGTAGACTGAAGATTG
128 TTGTAATCTTATCTCCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
* * *
27310523 TAGATCTTATCTTCCCGAGGTAGTAAGGGAGCAGATTTTAGCCACAAGTCTTATCTCCCTG
1 -A-ATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTG
27310584 CAGTTACAGT
Statistics
Matches: 346, Mismatches: 43, Indels: 47
0.79 0.10 0.11
Matches are distributed among these distances:
174 2 0.01
175 7 0.02
176 44 0.13
177 262 0.76
178 26 0.08
179 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (174 bp):
AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
CAAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCTTGAGGTAGCAAGGGAGCAGACGAAGATTG
TAATCTTATCTCCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
Found at i:27322166 original size:224 final size:224
Alignment explanation
Indices: 27321767--27322208 Score: 706
Period size: 224 Copynumber: 2.0 Consensus size: 224
27321757 GTCTACTGAA
* * * *
27321767 TTTGTCATTAGAGTGTCAAACCCCGGGGCCGGTGTGTTATGGTTGAGAAGGTGTGTAAGAATTGT
1 TTTGTCATTAGAGTGTCAAACCCCGAGGCCGGTGTGATATGGTTGAGAAGGTATATAAGAATTGT
* * *
27321832 CCTTTAATAGTTTGAGATCTGTGCTTTCCGACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
66 CCTTTAATAGTTCGAGATATGTGCTTTCCAACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
* *
27321897 ATTAATTCTGGGTATGGATTGGTTGACTTTACATGATACTGTTGTAAATTGCAAAAGAAAGACCA
131 ATTAATTCTGGCTATGGATTGGCTGACTTTACATGATACTGTTGTAAATTGCAAAAGAAAGACCA
27321962 TTGATCTATGGAACCAGAATAATACTAAG
196 TTGATCTATGGAACCAGAATAATACTAAG
* ** *
27321991 TTTGTGATTAGAGTGTCAAACCCTTAGGCCGGTGTGATATGGTTGATAAGGTATATAAGAATTGT
1 TTTGTCATTAGAGTGTCAAACCCCGAGGCCGGTGTGATATGGTTGAGAAGGTATATAAGAATTGT
* * *
27322056 CCTTTAATGGTTCGAGATATGTTCTTTCCAACTGATTTGATGTTACTACCATTTGTTGAGTTCAA
66 CCTTTAATAGTTCGAGATATGTGCTTTCCAACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
* *
27322121 CTTAATTCTGGCTATGGATTGGCTGACTTTACATGATGA-TGTTGTAAATTGTAAAAGAAAGACC
131 ATTAATTCTGGCTATGGATTGGCTGACTTTACATGAT-ACTGTTGTAAATTGCAAAAGAAAGACC
27322185 ATTGATCTATGGAACCAGAATAAT
195 ATTGATCTATGGAACCAGAATAAT
27322209 GAAGTCATTC
Statistics
Matches: 199, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
224 198 0.99
225 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (224 bp):
TTTGTCATTAGAGTGTCAAACCCCGAGGCCGGTGTGATATGGTTGAGAAGGTATATAAGAATTGT
CCTTTAATAGTTCGAGATATGTGCTTTCCAACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
ATTAATTCTGGCTATGGATTGGCTGACTTTACATGATACTGTTGTAAATTGCAAAAGAAAGACCA
TTGATCTATGGAACCAGAATAATACTAAG
Found at i:27334778 original size:24 final size:23
Alignment explanation
Indices: 27334745--27334802 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
27334735 AGTTGAAAAG
27334745 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
27334769 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
27334791 TATATATAATAA
1 TATA-ATAATAA
27334803 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:27335155 original size:49 final size:48
Alignment explanation
Indices: 27335073--27335230 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
27335063 CTTACTTTGA
*
27335073 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
27335120 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
27335169 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
27335218 GAATGTGATAAGT
1 GAATGTGA-AAGT
27335231 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:27335404 original size:37 final size:37
Alignment explanation
Indices: 27335348--27335426 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27335338 CCGAGCTCTA
* * *
27335348 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27335385 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27335422 AAGAC
1 AAGAC
27335427 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27340793 original size:38 final size:38
Alignment explanation
Indices: 27340673--27340792 Score: 132
Period size: 38 Copynumber: 3.1 Consensus size: 38
27340663 AAACCTGAAC
* **
27340673 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTTAGAT
1 ATAACACCAGCACGAAGCCTGCGGGA-TTT-AACCCAGAT
* * * *
27340713 ATAACACCAGCACTAGGCCTGCGGGATTTAAGCCGGAT
1 ATAACACCAGCACGAAGCCTGCGGGATTTAACCCAGAT
* * *
27340751 ATAATACCAGCACGAAGCTTGCGGGATTTAACCCAAAT
1 ATAACACCAGCACGAAGCCTGCGGGATTTAACCCAGAT
27340789 ATAA
1 ATAA
27340793 TTCTAGCATA
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
38 40 0.61
39 3 0.05
40 23 0.35
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (38 bp):
ATAACACCAGCACGAAGCCTGCGGGATTTAACCCAGAT
Found at i:27341454 original size:22 final size:22
Alignment explanation
Indices: 27341426--27341469 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
27341416 AGCTTAAACA
27341426 CTTAAGAACTTACCTTGAAGGT
1 CTTAAGAACTTACCTTGAAGGT
27341448 CTTAAGAACTTACCTTGAAGGT
1 CTTAAGAACTTACCTTGAAGGT
27341470 TGCCGAACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (22 bp):
CTTAAGAACTTACCTTGAAGGT
Found at i:27343361 original size:48 final size:47
Alignment explanation
Indices: 27343292--27343657 Score: 210
Period size: 48 Copynumber: 7.8 Consensus size: 47
27343282 TTGGGTGATA
* * *
27343292 TGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCACATTG
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-ATCGACATTG
27343340 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGACA---
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCA-T---ATCGACATTG
* * * *
27343388 TCTGATCCAGTGTAAGACCATGTCTGAGACATGG-A-ATCGACATTGAG
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATATCGACATT--G
* * * *
27343435 ACGAGAGCTAGTGTCAGACCATGTCTGGGACATGGCAT-T-GGCATTG
1 -TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATATCGACATTG
* *
27343481 TGACGAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCCT-T-GACA---
1 T---GTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATATCGACATTG
* * * * * *
27343525 TGTGAGCCAGTATAAGACCATGTCTGGGGCTTAGCAT-T-GGCATTG
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATATCGACATTG
* * * * * * *
27343570 AGACGAGCGCTAGTGCAAGACTATGTCTAGGATATGGCATCGGCCTCGACA---
1 TG-TGA--GCTAGTGTAAGACCATGTCTGGGACATGGCAT----ATCGACATTG
27343621 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
27343658 CGGTAATTTA
Statistics
Matches: 247, Mismatches: 44, Indels: 54
0.72 0.13 0.16
Matches are distributed among these distances:
41 26 0.11
42 14 0.06
44 1 0.00
45 1 0.00
46 3 0.01
47 8 0.03
48 178 0.72
49 3 0.01
50 2 0.01
51 7 0.03
53 1 0.00
54 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (47 bp):
TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATATCGACATTG
Found at i:27343496 original size:96 final size:93
Alignment explanation
Indices: 27343297--27343657 Score: 333
Period size: 96 Copynumber: 3.8 Consensus size: 93
27343287 TGATATGTGT
* * *
27343297 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAAC--CACATTGTGTGAGCTAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTCTGAGACATGG-ATC-GCTTGACA---TGTGAGCTAGTGTAAGACCA
* * *
27343360 TGTCTGGGACATGGCATTGGCATCGACATC-TGA
61 TGTCTGGGACATGGCATTGGCATTGAGA-CGAGA
* * * * * *
27343393 TCCAGTGTAAGACCATGTCTGAGACATGGAATCGACATTGAGACGAGAGCTAGTGTCAGACCATG
1 GCTAGTGTAAGACCATGTCTGAGACATGG-ATCG-C-TTGACATGTGAGCTAGTGTAAGACCATG
*
27343458 TCTGGGACATGGCATTGGCATTGTGACGAGA
63 TCTGGGACATGGCATTGGCATTGAGACGAGA
* * *
27343489 GCTAGTGTAAGACCATGTCTGGGACAT-G--C-CTTGACATGTGAGCCAGTATAAGACCATGTCT
1 GCTAGTGTAAGACCATGTCTGAGACATGGATCGCTTGACATGTGAGCTAGTGTAAGACCATGTCT
* * * *
27343550 GGGGCTTAGCATTGGCATTGAGACGAGC
66 GGGACATGGCATTGGCATTGAGACGAGA
* * * *
27343578 GCTAGTGCAAGACTATGTCT-AGGATATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGA-GACATGG-ATC-G-CTTGACATGTGAGCTAGTGTAAGACCAT
27343642 GTCTGGGACATGGCAT
62 GTCTGGGACATGGCAT
27343658 CGGTAATTTA
Statistics
Matches: 214, Mismatches: 38, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
89 70 0.33
90 2 0.01
92 1 0.00
93 1 0.00
95 2 0.01
96 136 0.64
99 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACCATGTCTGAGACATGGATCGCTTGACATGTGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATTGGCATTGAGACGAGA
Found at i:27343583 original size:89 final size:92
Alignment explanation
Indices: 27343450--27343657 Score: 251
Period size: 89 Copynumber: 2.2 Consensus size: 92
27343440 AGCTAGTGTC
* * *
27343450 AGACCATGTCTGGGACATGGCATTGGCATTGTGACGAGAGCTAGTGTAAGACCATGTCT-GG-GA
1 AGACCATGTCTGGGACATAGCATTGGCATTGAGACGAGAGCTAGTGCAAGACCATGTCTAGGAGA
*
27343513 CAT-GCCTTGACATGTGAGCCAGTATA
66 CATCGCCTCGACATGTGAGCCAGTATA
* * * *
27343539 AGACCATGTCTGGGGCTTAGCATTGGCATTGAGACGAGCGCTAGTGCAAGACTATGTCTAGGATA
1 AGACCATGTCTGGGACATAGCATTGGCATTGAGACGAGAGCTAGTGCAAGACCATGTCTAGG--A
* * *
27343604 TGGCATCGGCCTCGACATGTGAGCTAGTGTA
64 -GACATC-GCCTCGACATGTGAGCCAGTATA
*
27343635 AGACCATGTCTGGGACATGGCAT
1 AGACCATGTCTGGGACATAGCAT
27343658 CGGTAATTTA
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
89 52 0.53
90 2 0.02
94 4 0.04
96 40 0.41
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (92 bp):
AGACCATGTCTGGGACATAGCATTGGCATTGAGACGAGAGCTAGTGCAAGACCATGTCTAGGAGA
CATCGCCTCGACATGTGAGCCAGTATA
Found at i:27343607 original size:137 final size:139
Alignment explanation
Indices: 27343343--27343659 Score: 354
Period size: 137 Copynumber: 2.3 Consensus size: 139
27343333 CACATTGTGT
* *
27343343 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATCTGATCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GC----GCATCGACATCTGAGCCAGTATAAGACCA
* *
27343408 TGTCTGAGACATGGAATCGACATTGAGACGAGAGCTAGTGTCAGACCATGTCTGGGACATGGCAT
61 TGTCTGAGACATAGAATCGACATTGAGACGAGAGCTAGTGTCAGACCATGTCTAGGACATGGCAT
* * **
27343473 TGGCATTGTGACGA
126 CGGCATCGACACGA
* *
27343487 GAGCTAGTGTAAGACCATGTCTGGGACATGC-C-TTGACATGTGAGCCAGTATAAGACCATGTCT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCGCATCGACATCTGAGCCAGTATAAGACCATGTCT
* * * * * * * * *
27343550 GGGGCTTAGCATTGGCATTGAGACGAGCGCTAGTG-CAAGACTATGTCTAGGATATGGCATCGGC
66 GAGACATAGAATCGACATTGAGACGAGAGCTAGTGTC-AGACCATGTCTAGGACATGGCATCGGC
* * *
27343614 CTCGACATGT
130 ATCGACACGA
27343624 GAGCTAGTGTAAGACCATGTCTGGGACATG-GCATCG
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCGCATCG
27343660 GTAATTTACC
Statistics
Matches: 147, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
136 1 0.01
137 112 0.76
138 3 0.02
143 2 0.01
144 29 0.20
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (139 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCGCATCGACATCTGAGCCAGTATAAGACCATGTCT
GAGACATAGAATCGACATTGAGACGAGAGCTAGTGTCAGACCATGTCTAGGACATGGCATCGGCA
TCGACACGA
Found at i:27355882 original size:47 final size:47
Alignment explanation
Indices: 27355813--27355980 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 47
27355803 GGGTTATTGT
* * ** *
27355813 GAGCTAGTGTAAGGCATGTCTGGGACATGCATTGACCA-CATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATTCACCATCAAGACGA
* * *
27355859 GAGTTAGTGTAAGACCATGTCTGGGACATGACA-TCAGCATTAAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATTCACCATCAAGACGA
* *
27355907 GAGCTAGTGTAAGACATGTCTGGGACATGCA-TCGGCC-TCTAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATTC-ACCATCAAGACG-A
*
27355954 -AGCCAGTGTAAGACATGTCTGGGACAT
1 GAGCTAGTGTAAGACATGTCTGGGACAT
27355981 ACATCAGCTA
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
46 48 0.47
47 36 0.35
48 19 0.18
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATTCACCATCAAGACGA
Found at i:27360600 original size:24 final size:26
Alignment explanation
Indices: 27360569--27360638 Score: 81
Period size: 24 Copynumber: 2.8 Consensus size: 26
27360559 TGATCTAAAA
27360569 CAGTAAGCTCATACGAGCTGAGA-AT
1 CAGTAAGCTCATACGAGCTGAGATAT
* * *
27360594 -AGTAAGCTCTTACGAGTTGATATAT
1 CAGTAAGCTCATACGAGCTGAGATAT
* *
27360619 CGGTAAGCTCATATGAGCTG
1 CAGTAAGCTCATACGAGCTG
27360639 TGGTGAGTCC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 19 0.53
25 2 0.06
26 15 0.42
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (26 bp):
CAGTAAGCTCATACGAGCTGAGATAT
Found at i:27365213 original size:37 final size:37
Alignment explanation
Indices: 27365149--27365231 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
27365139 TATACCTCAG
* *
27365149 AATTTTTCAATTTTTACAAAATAGTCCCTAAAATTCA
1 AATTTTACAATTTTTACAAAATAGTCCCTAAAATCCA
* ** *
27365186 AATTTTACAATTTTTACGATTTTGTCCCTAAAATCCA
1 AATTTTACAATTTTTACAAAATAGTCCCTAAAATCCA
*
27365223 AAATTTACA
1 AATTTTACA
27365232 CAATATTACA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.41
Consensus pattern (37 bp):
AATTTTACAATTTTTACAAAATAGTCCCTAAAATCCA
Found at i:27368957 original size:42 final size:43
Alignment explanation
Indices: 27368907--27369012 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
27368897 TGATATTTAT
*
27368907 GTGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATTTC
1 GTGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGATTAC
* *
27368949 GTGTAAGACCCTGTTTAGGG-CAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCT-GGGACAGTGGCATCGATATTTGATTAC
* *
27368992 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
27369013 GTTGACATTG
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTAC
Found at i:27376154 original size:43 final size:42
Alignment explanation
Indices: 27376038--27376155 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
27376028 GATTTGTGAT
* * * *
27376038 TTACGTGTAAGACCATGTTTGGGACATCGGCATCATATTTGG
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCATCATATTTGA
** * *
27376080 TTTTGTGTAAGACCCTGTCTGGGGCAG-TGGCATCAATATTTGA
1 TTACGTGTAAGACCATGTCTGGGAC-GTTGGCATC-ATATTTGA
* *
27376123 TTACATGTAAGACCATATCTGGGACGTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCAT
27376156 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACGTTGGCATCATATTTGA
Found at i:27378134 original size:26 final size:24
Alignment explanation
Indices: 27378102--27378154 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
27378092 AAATTTTTAT
27378102 CAAATTAATCATTTAAAATCATCCAC
1 CAAATTAATCA--TAAAATCATCCAC
* *
27378128 CAAATTATTCATAAAATCATTCAC
1 CAAATTAATCATAAAATCATCCAC
27378152 CAA
1 CAA
27378155 TCATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 15 0.60
26 10 0.40
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (24 bp):
CAAATTAATCATAAAATCATCCAC
Found at i:27382419 original size:6 final size:6
Alignment explanation
Indices: 27382408--27382479 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
27382398 AACCAAAATG
* *
27382408 AGAATC AGAATC AAAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
27382456 AG-GTGAC AGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAAT
27382480 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 47 0.85
7 4 0.07
8 1 0.02
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:27382422 original size:18 final size:18
Alignment explanation
Indices: 27382401--27382454 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
27382391 GAATTGGAAC
*
27382401 CAAAATGAGAATCAGAAT
1 CAAAATCAGAATCAGAAT
27382419 CAAAATCAGTAA-CAGAAT
1 CAAAATCAG-AATCAGAAT
*
27382437 CAGAATCAGAATCAGAAT
1 CAAAATCAGAATCAGAAT
27382455 TAGGTGACAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.17
Consensus pattern (18 bp):
CAAAATCAGAATCAGAAT
Found at i:27382468 original size:31 final size:30
Alignment explanation
Indices: 27382408--27382479 Score: 108
Period size: 31 Copynumber: 2.4 Consensus size: 30
27382398 AACCAAAATG
27382408 AGAATCAGAATCAAAATCAGTAACAGAATC
1 AGAATCAGAATCAAAATCAGTAACAGAATC
* * *
27382438 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAAAATCA-GTAACAGAATC
27382469 AGAATCAGAAT
1 AGAATCAGAAT
27382480 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 17 0.45
31 21 0.55
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (30 bp):
AGAATCAGAATCAAAATCAGTAACAGAATC
Found at i:27382634 original size:27 final size:26
Alignment explanation
Indices: 27382597--27382662 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
27382587 AGCATGGCTG
*
27382597 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
27382623 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
27382650 CCAGAATCAGATA
1 CCAGAA-CAGATA
27382663 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:27382667 original size:27 final size:27
Alignment explanation
Indices: 27382597--27382670 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
27382587 AGCATGGCTG
* *
27382597 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
27382623 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
27382650 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
27382671 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:27382677 original size:27 final size:27
Alignment explanation
Indices: 27382621--27382678 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
27382611 GTGACAGAGT
* * *
27382621 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
27382648 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
27382675 CACC
1 CACC
27382679 TAACAGGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:27382883 original size:22 final size:22
Alignment explanation
Indices: 27382835--27382893 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
27382825 GTAAATACGT
*
27382835 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
27382857 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
27382879 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
27382894 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:27383020 original size:27 final size:26
Alignment explanation
Indices: 27382981--27383063 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
27382971 TCGATCAGTC
* *
27382981 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
27383007 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
27383034 AATAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
27383061 AAC
1 AAC
27383064 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.14
27 43 0.86
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:27383311 original size:27 final size:27
Alignment explanation
Indices: 27383262--27383449 Score: 223
Period size: 27 Copynumber: 7.0 Consensus size: 27
27383252 GCGGCAAAAT
* * ** *
27383262 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
27383289 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
27383316 GATATTTCTACACTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
27383343 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
27383370 AGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
27383397 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
27383424 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
27383450 TAGTAATTTC
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:27383496 original size:27 final size:27
Alignment explanation
Indices: 27383466--27384006 Score: 583
Period size: 27 Copynumber: 20.1 Consensus size: 27
27383456 TTTCACAATT
* *
27383466 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
27383493 GAGGGT-AAACGATAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * *
27383519 GAGGGTAAACCAGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
**
27383546 GA-GGTAAAACGGTAATTCTACAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
**
27383572 GAGGGTAAAATAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* **
27383599 AAGGGTAAAATAGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
27383625 TGAGGGTAAAACGATAATTCTGTAAATT
1 -GAGGGTAAAACGGTAATTCTGTAAATC
*
27383653 GAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
27383679 TGAGGGTAAAACGATAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
** * ** *
27383707 GAGGGTAAAATAGTAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
27383734 AAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
**
27383760 TGAGGGTAAAATAGTAATTCTGTAAA-C
1 -GAGGGTAAAACGGTAATTCTGTAAATC
*
27383787 TGAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* *
27383815 AAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
27383841 TGAGGGTAAAACGGTAATTCTATAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* ** *
27383869 GAGGGTAAAACGGTAATTTTAAAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * *
27383896 AAGGGTAAAATGATAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
27383923 GAGGGTAAAACGGTAATTCTGTTAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * ** *
27383950 GAGGGTAAAACAGTAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
27383977 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
27384004 GAG
1 GAG
27384007 AGTACTTTGG
Statistics
Matches: 430, Mismatches: 74, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
26 47 0.11
27 380 0.88
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:27386035 original size:30 final size:29
Alignment explanation
Indices: 27385999--27386117 Score: 132
Period size: 30 Copynumber: 3.9 Consensus size: 29
27385989 AAGAAACATT
* * *
27385999 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
27386029 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
27386059 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
27386089 ATCAGAATTAGGTGACAGAATCAGAATCA
1 ATCAGAATT--GTAACAGAATCAGAATCA
27386118 AAATGTGAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
29 1 0.01
30 55 0.71
31 21 0.27
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:27386116 original size:6 final size:6
Alignment explanation
Indices: 27386020--27386096 Score: 97
Period size: 6 Copynumber: 12.8 Consensus size: 6
27386010 AACCAAAATG
*
27386020 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
27386068 AGTAA-C AGAATC AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAATC AGAAT
27386097 TAGGTGACAG
Statistics
Matches: 63, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
5 5 0.08
6 54 0.86
7 3 0.05
8 1 0.02
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:27386276 original size:27 final size:26
Alignment explanation
Indices: 27386239--27386304 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
27386229 AGCATGGTTG
*
27386239 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
27386265 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
27386292 CCAGAATCAGATA
1 CCAGAA-CAGATA
27386305 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:27386309 original size:27 final size:27
Alignment explanation
Indices: 27386239--27386312 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
27386229 AGCATGGTTG
* *
27386239 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
27386265 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
27386292 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
27386313 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:27386319 original size:27 final size:27
Alignment explanation
Indices: 27386263--27386320 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
27386253 GTGACAGAGT
* * *
27386263 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
27386290 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
27386317 CACC
1 CACC
27386321 TAACAAGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:27386646 original size:27 final size:26
Alignment explanation
Indices: 27386605--27386684 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
27386595 ATCGGTCAAT
* *
27386605 AGATATTGTGACAGAGTCACCAGATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
*
27386632 AGATATTGTGGCAGAGCCACTAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
* *
27386658 AGATATTTATGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
27386685 GCTTCCTCCG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.15
27 39 0.85
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:27386932 original size:27 final size:27
Alignment explanation
Indices: 27386902--27387070 Score: 194
Period size: 27 Copynumber: 6.3 Consensus size: 27
27386892 ACCCCAAAAA
*
27386902 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
27386929 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
27386956 GGTATTTCGATAATTTTACCCTACGGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
27386983 GGTATTTCAGTAATTCTATCCTATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
27387010 GGTATTTTAGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
27387037 GGTATTTCGGTAATTCTACCCTATAGA
1 GGTATTTCGGTAATTCTACCCTACAGG
27387064 GGTATTT
1 GGTATTT
27387071 TAGTAATTTC
Statistics
Matches: 121, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:27387060 original size:54 final size:54
Alignment explanation
Indices: 27386911--27387078 Score: 223
Period size: 54 Copynumber: 3.1 Consensus size: 54
27386901 AGGTATCTCG
* * * *
27386911 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTA
* * * *
27386964 GATAATTTTACCCTACGGGGGTATTTCAGTAATTCTATCCTATAAGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTA
*
27387019 GTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTAT-AGAGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAG-GGTATTTTA
27387073 GTAATT
1 GTAATT
27387079 TCACAATTGA
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.03
54 92 0.93
55 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTA
Found at i:27387120 original size:27 final size:27
Alignment explanation
Indices: 27387087--27387629 Score: 619
Period size: 27 Copynumber: 20.1 Consensus size: 27
27387077 TTTCACAATT
*
27387087 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* * *
27387114 GAGGGTAAAACGATAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
27387141 GAGGGT-AAACTAGTAATTCTATAAATC
1 GAGGGTAAAAC-GGTAATTCTATAAATC
* * *
27387168 GAGGGTAAAATGGTAATTTTACAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
**
27387195 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
27387222 GAGGGTAAAACAGTAATTCTATAAA-C
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
27387248 TGAGGGTAAAACGATAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTATAAATC
* *
27387276 GAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTATAAATC
27387302 TGAGGGTAAAACGGTAATTCTATAAATC
1 -GAGGGTAAAACGGTAATTCTATAAATC
** * * *
27387330 GAGGGTAAAATAGTAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTATAAATC
*
27387357 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
** * *
27387384 GAGGGTAAAATAGTAATTCTGTTAA-C
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
27387410 TAAGGGTAAAATGGTAATTCTATAAATC
1 -GAGGGTAAAACGGTAATTCTATAAATC
*
27387438 GAGGGTAAAATGGTAATTCTATAAA-C
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
27387464 TGAGGGTAAAACGGTAATTTTGTAAATC
1 -GAGGGTAAAACGGTAATTCTATAAATC
* * * *
27387492 GATGGTCAAACGGTAATTTTAAAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
27387519 GAGGGTAAAACGATAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
27387546 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
** * * *
27387573 GAGGGTAAAATAGTAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
27387600 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
27387627 GAG
1 GAG
27387630 AGTACTTTGG
Statistics
Matches: 439, Mismatches: 67, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
26 8 0.02
27 424 0.97
28 7 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTATAAATC
Found at i:27389031 original size:17 final size:17
Alignment explanation
Indices: 27388991--27389033 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
27388981 GAATAAAAAT
*
27388991 AAAAATAAACACCTAAA
1 AAAAATAAACAACTAAA
27389008 AAGAAATAAA-AACTAAA
1 AA-AAATAAACAACTAAA
27389025 GAAAAATAA
1 -AAAAATAA
27389034 TTTCTCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.74, C:0.09, G:0.05, T:0.12
Consensus pattern (17 bp):
AAAAATAAACAACTAAA
Found at i:27394063 original size:19 final size:20
Alignment explanation
Indices: 27394019--27394061 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
27394009 AAAGGACCCA
*
27394019 AAAACAAGCTAAAAAGGGAC
1 AAAACGAGCTAAAAAGGGAC
27394039 AAAACGAGCTAAAAAGGGAC
1 AAAACGAGCTAAAAAGGGAC
27394059 AAA
1 AAA
27394062 CGGACCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.60, C:0.14, G:0.21, T:0.05
Consensus pattern (20 bp):
AAAACGAGCTAAAAAGGGAC
Found at i:27395091 original size:13 final size:13
Alignment explanation
Indices: 27395075--27395107 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
27395065 TTTAATTAAA
*
27395075 TTAGTTAATTAGT
1 TTAGATAATTAGT
27395088 TTAGATAATTAGT
1 TTAGATAATTAGT
27395101 TTA-ATAA
1 TTAGATAA
27395108 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:27410551 original size:16 final size:16
Alignment explanation
Indices: 27410531--27410623 Score: 70
Period size: 17 Copynumber: 5.9 Consensus size: 16
27410521 ATCCTCCTTT
*
27410531 TTTTA-TTTATTCTTA
1 TTTTATTTTATTTTTA
27410546 TTTTTATTTTA-TTTTA
1 -TTTTATTTTATTTTTA
27410562 -TTTATTTTATTTTTA
1 TTTTATTTTATTTTTA
* *
27410577 GTTTTCTTTTGACTTTTA
1 -TTTTATTTT-ATTTTTA
* *
27410595 TTTTCATTTCAATTTTA
1 TTTT-ATTTTATTTTTA
27410612 --TTATTTTATTTT
1 TTTTATTTTATTTT
27410624 GAAAGACATA
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
14 17 0.27
15 7 0.11
16 9 0.14
17 21 0.33
18 9 0.14
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTATTTTATTTTTA
Found at i:27410553 original size:12 final size:11
Alignment explanation
Indices: 27410530--27410623 Score: 61
Period size: 12 Copynumber: 8.4 Consensus size: 11
27410520 AATCCTCCTT
27410530 TTTTTA-TTTA
1 TTTTTATTTTA
*
27410540 TTCTTATTTT-
1 TTTTTATTTTA
27410550 TATTTTATTTTA
1 T-TTTTATTTTA
27410562 --TTTATTTTA
1 TTTTTATTTTA
*
27410571 TTTTTAGTTTTC
1 TTTTTA-TTTTA
*
27410583 TTTTGACTTTTA
1 TTTTTA-TTTTA
* *
27410595 TTTTCATTTCAA
1 TTTTTATTT-TA
27410607 TTTTATTATTTTA
1 -TTT-TTATTTTA
27410620 TTTT
1 TTTT
27410624 GAAAGACATA
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
9 9 0.14
10 6 0.09
11 19 0.29
12 22 0.34
13 4 0.06
14 5 0.08
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.74
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:27410557 original size:5 final size:5
Alignment explanation
Indices: 27410531--27410623 Score: 68
Period size: 5 Copynumber: 17.8 Consensus size: 5
27410521 ATCCTCCTTT
27410531 TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA -TTTA TTTTA TTTTTA
1 TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
* *
27410577 GTTTTC TTTTGA CTTTTA TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTT-A -TTTTA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
27410624 GAAAGACATA
Statistics
Matches: 72, Mismatches: 5, Indels: 22
0.73 0.05 0.22
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 31 0.43
6 24 0.33
7 6 0.08
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:27410562 original size:26 final size:26
Alignment explanation
Indices: 27410531--27410586 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
27410521 ATCCTCCTTT
27410531 TTTTATTTATTCTTATTTTTA-TTTTA
1 TTTTATTTATT-TTATTTTTAGTTTTA
*
27410557 TTTTATTTATTTTATTTTTAGTTTTC
1 TTTTATTTATTTTATTTTTAGTTTTA
27410583 TTTT
1 TTTT
27410587 GACTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.79
Consensus pattern (26 bp):
TTTTATTTATTTTATTTTTAGTTTTA
Found at i:27410567 original size:9 final size:9
Alignment explanation
Indices: 27410531--27410573 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
27410521 ATCCTCCTTT
27410531 TTTTATTTA
1 TTTTATTTA
27410540 TTCTTATTT-
1 TT-TTATTTA
*
27410549 TTAT-TTTA
1 TTTTATTTA
27410557 TTTTATTTA
1 TTTTATTTA
27410566 TTTTATTT
1 TTTTATTT
27410574 TTAGTTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
7 3 0.10
8 4 0.14
9 16 0.55
10 6 0.21
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTATTTA
Found at i:27410688 original size:13 final size:13
Alignment explanation
Indices: 27410670--27410694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27410660 CCATTTTCTG
27410670 GTATTTCTAACAA
1 GTATTTCTAACAA
27410683 GTATTTCTAACA
1 GTATTTCTAACA
27410695 GACTTCCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
GTATTTCTAACAA
Found at i:27414450 original size:30 final size:30
Alignment explanation
Indices: 27414393--27414452 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
27414383 CACAGCCGAC
* * *
27414393 CATACATCCGGTAGCCACGCCCGTGTGTCT
1 CATACATCCAGTAGACACGCCCATGTGTCT
* *
27414423 CATACGTCCAGTAGACATGCCCATGTGTCT
1 CATACATCCAGTAGACACGCCCATGTGTCT
27414453 AGGCTGTGTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (30 bp):
CATACATCCAGTAGACACGCCCATGTGTCT
Found at i:27415684 original size:40 final size:40
Alignment explanation
Indices: 27415640--27415716 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
27415630 TTAGTGCCAC
*
27415640 ATATAGCCGAAGCTAT-TCCAATTCGCACACTAAGTGCTTT
1 ATATAGCCGAAGCTATCT-CAAATCGCACACTAAGTGCTTT
27415680 ATATAGCCGAAGCTATCTCAAATCGCACACTAAGTGC
1 ATATAGCCGAAGCTATCTCAAATCGCACACTAAGTGC
27415717 CAAACATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
40 34 0.97
41 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (40 bp):
ATATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCTTT
Found at i:27421395 original size:29 final size:29
Alignment explanation
Indices: 27421334--27421453 Score: 188
Period size: 29 Copynumber: 4.2 Consensus size: 29
27421324 TACATGCATG
* *
27421334 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCACATT
27421362 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
*
27421391 CATATGGCCCATTAGGCCCAAATTACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* *
27421420 CATATGGTCCATTAGACCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
27421449 CATAT
1 CATAT
27421454 TCATGCTGTC
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 18 0.21
29 67 0.79
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:27429254 original size:40 final size:41
Alignment explanation
Indices: 27429178--27429261 Score: 127
Period size: 41 Copynumber: 2.1 Consensus size: 41
27429168 CAACGCTGGA
27429178 ATAGAGTTACGAGGCATTACCGGATAACACACCTCATTCAC
1 ATAGAGTTACGAGGCATTACCGGATAACACACCTCATTCAC
* *
27429219 ATAGGGTTATGAGGCATTACCAGG-T-ACACACCTCATTCAC
1 ATAGAGTTACGAGGCATTACC-GGATAACACACCTCATTCAC
27429259 ATA
1 ATA
27429262 CATATATGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
40 18 0.45
41 20 0.50
42 2 0.05
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (41 bp):
ATAGAGTTACGAGGCATTACCGGATAACACACCTCATTCAC
Found at i:27430856 original size:39 final size:40
Alignment explanation
Indices: 27430802--27430877 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 40
27430792 TTAATGCCAC
*
27430802 ATATAGCCGAAGCTAT-TCCAATTCGCACA-TAAGTGCTTT
1 ATATAGCCAAAGCTATCTCCAATT-GCACACTAAGTGCTTT
*
27430841 ATATAGCCAAAGCTATCTCGAATTGCACACTAAGTGC
1 ATATAGCCAAAGCTATCTCCAATTGCACACTAAGTGC
27430878 CAAACATAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 20 0.61
40 13 0.39
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (40 bp):
ATATAGCCAAAGCTATCTCCAATTGCACACTAAGTGCTTT
Found at i:27434352 original size:16 final size:17
Alignment explanation
Indices: 27434331--27434370 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
27434321 CTTAGGCCAT
27434331 ATTATA-ACCATATACC
1 ATTATAGACCATATACC
27434347 ATTATATGACCATATACC
1 ATTATA-GACCATATACC
27434365 ATTATA
1 ATTATA
27434371 TGCTATGTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 6 0.27
18 16 0.73
ACGTcount: A:0.42, C:0.20, G:0.03, T:0.35
Consensus pattern (17 bp):
ATTATAGACCATATACC
Found at i:27434358 original size:18 final size:18
Alignment explanation
Indices: 27434337--27434372 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27434327 CCATATTATA
27434337 ACCATATACCATTATATG
1 ACCATATACCATTATATG
27434355 ACCATATACCATTATATG
1 ACCATATACCATTATATG
27434373 CTATGTCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (18 bp):
ACCATATACCATTATATG
Found at i:27438597 original size:26 final size:26
Alignment explanation
Indices: 27438568--27438619 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27438558 CTTTCACGAT
*
27438568 GAGGTTAAGTCTCCTTTGCCAATCAA
1 GAGGTTAAGTCTCCTTTACCAATCAA
27438594 GAGGTTAAGTCTCCTTTACCAATCAA
1 GAGGTTAAGTCTCCTTTACCAATCAA
27438620 TCTTACCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GAGGTTAAGTCTCCTTTACCAATCAA
Found at i:27440583 original size:6 final size:6
Alignment explanation
Indices: 27440572--27440637 Score: 132
Period size: 6 Copynumber: 11.0 Consensus size: 6
27440562 ATTGCATGAA
27440572 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
27440620 ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT
27440638 CTGTCTTTAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:27441000 original size:144 final size:144
Alignment explanation
Indices: 27440769--27441162 Score: 533
Period size: 144 Copynumber: 2.7 Consensus size: 144
27440759 AGATCTCTTA
* * * * *
27440769 TAAGACCATATCTGGGATATGGCATCGGCATTGAAATGAGATCCCATGTA-AA-ACCATATCTAG
1 TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGT--CTTGTATAAGACCATGTCTAG
* * * ** * *
27440832 GATATGGTATCGGCATCGAAATGAGATC-CCGTGTAAGACCATATCTGGGATATGGCATCAACAT
64 GACATGGCATCGGCACCGTTATGAGA-CATCGTGTAAGACCATATCTGGGATATAGCATCAACAT
27440896 CAGTATGAGATCCCATG
128 CAGTATGAGATCCCATG
* * * *
27440913 TAAGACCATATCTGGGATATGGTATTGGCATCGATATGAGGTCTTGTATAAGACAATGTCTGGGA
1 TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGTCTTGTATAAGACCATGTCTAGGA
* *
27440978 CATGGCATCGGCACCGTTATGAGACTTCGTGTAAGACCATATCTGGGATATAGCATCGACATCAG
66 CATGGCATCGGCACCGTTATGAGACATCGTGTAAGACCATATCTGGGATATAGCATCAACATCAG
27441043 TATGAGATCCCATG
131 TATGAGATCCCATG
*
27441057 TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGTCTCGTATAAGACCATGTCTAGGA
1 TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGTCTTGTATAAGACCATGTCTAGGA
** * *
27441122 CATAACATCGACACCGTTATAAGACATCGTGTAAGACCATA
66 CATGGCATCGGCACCGTTATGAGACATCGTGTAAGACCATA
27441163 GTTGGGTTGT
Statistics
Matches: 220, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
142 5 0.02
143 3 0.01
144 212 0.96
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (144 bp):
TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGTCTTGTATAAGACCATGTCTAGGA
CATGGCATCGGCACCGTTATGAGACATCGTGTAAGACCATATCTGGGATATAGCATCAACATCAG
TATGAGATCCCATG
Found at i:27441109 original size:48 final size:48
Alignment explanation
Indices: 27440769--27441113 Score: 345
Period size: 48 Copynumber: 7.2 Consensus size: 48
27440759 AGATCTCTTA
* *
27440769 TAAGACCATATCTGGGATATGGCATCGGCATTGAAATGAGATCCCATG
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCGTG
* * * * *
27440817 TAAAACCATATCTAGGATATGGTATCGGCATCGAAATGAGATCCCGTG
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCGTG
** * *
27440865 TAAGACCATATCTGGGATATGGCATCAACA-TCAGTATGAGATCCCATG
1 TAAGACCATATCTGGGATATGGCATCGGCATTGA-TATGAGATCCCGTG
* * * * ** *
27440913 TAAGACCATATCTGGGATATGGTATTGGCATCGATATGAGGTCTTGTA
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCGTG
* * * ** * *
27440961 TAAGACAATGTCTGGGACATGGCATCGGCACCGTTATGAGA-CTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATC-CCGTG
* * * *
27441009 TAAGACCATATCTGGGATATAGCATCGACA-TCAGTATGAGATCCCATG
1 TAAGACCATATCTGGGATATGGCATCGGCATTGA-TATGAGATCCCGTG
* * * *
27441057 TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGTCTCGTA
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCGTG
27441105 TAAGACCAT
1 TAAGACCAT
27441114 GTCTAGGACA
Statistics
Matches: 238, Mismatches: 53, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
47 2 0.01
48 232 0.97
49 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCGTG
Found at i:27441109 original size:96 final size:96
Alignment explanation
Indices: 27440769--27441162 Score: 364
Period size: 96 Copynumber: 4.1 Consensus size: 96
27440759 AGATCTCTTA
* *
27440769 TAAGACCATATCTGGGATATGGCATCGGCATTGAAATGAGATCCCATGTAAAACCATATCTAGGA
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCATGTAAGACCATATCTAGGA
* * * *
27440834 TATGGTATCGGCATCGAAATGAGATCCCGTG
66 TATAGCATCGACATCGATATGAGATCCCGTG
** * *
27440865 TAAGACCATATCTGGGATATGGCATCAACA-TCAGTATGAGATCCCATGTAAGACCATATCTGGG
1 TAAGACCATATCTGGGATATGGCATCGGCATTGA-TATGAGATCCCATGTAAGACCATATCTAGG
* * * * * ** *
27440929 ATATGGTATTGGCATCGATATGAGGTCTTGTA
65 ATATAGCATCGACATCGATATGAGATCCCGTG
* * * ** * * * *
27440961 TAAGACAATGTCTGGGACATGGCATCGGCACCGTTATGAGA-CTTCGTGTAAGACCATATCTGGG
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATC-CCATGTAAGACCATATCTAGG
*
27441025 ATATAGCATCGACATC-AGTATGAGATCCCATG
65 ATATAGCATCGACATCGA-TATGAGATCCCGTG
* * * * * *
27441057 TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGTCTCGTATAAGACCATGTCTAGGA
1 TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCATGTAAGACCATATCTAGGA
* * * * * *
27441122 CATAACATCGACACCGTTATAAGA-CATCGTG
66 TATAGCATCGACATCGATATGAGATC-CCGTG
27441153 TAAGACCATA
1 TAAGACCATA
27441163 GTTGGGTTGT
Statistics
Matches: 242, Mismatches: 49, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
95 5 0.02
96 236 0.98
97 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (96 bp):
TAAGACCATATCTGGGATATGGCATCGGCATTGATATGAGATCCCATGTAAGACCATATCTAGGA
TATAGCATCGACATCGATATGAGATCCCGTG
Found at i:27445440 original size:15 final size:16
Alignment explanation
Indices: 27445422--27445459 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
27445412 AATTGGAAAG
27445422 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
* *
27445437 ATGACAATTTAATTAA
1 ATGAAAAGTTAATTAA
27445453 ATGAAAA
1 ATGAAAA
27445460 AGAAAACAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.55, C:0.03, G:0.11, T:0.32
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:27447515 original size:29 final size:29
Alignment explanation
Indices: 27447454--27447543 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
27447444 CACATACCTG
*
27447454 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
27447482 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
27447511 TATATGGCCCATCAGGCCCAATTCACATA
1 TATATGGCCCATTAGGCCCAAATCACATT
27447540 TATA
1 TATA
27447544 GTCATGCTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 18 0.32
29 39 0.68
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:27447781 original size:16 final size:16
Alignment explanation
Indices: 27447760--27447797 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
27447750 TCAATATTCA
*
27447760 GCTTTTTAGTATTTCG
1 GCTTTTTAGCATTTCG
*
27447776 GCTTTTTGGCATTTCG
1 GCTTTTTAGCATTTCG
27447792 GCTTTT
1 GCTTTT
27447798 GTCGATCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.16, G:0.21, T:0.55
Consensus pattern (16 bp):
GCTTTTTAGCATTTCG
Found at i:27451497 original size:29 final size:29
Alignment explanation
Indices: 27451436--27451525 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
27451426 CACATACCTG
*
27451436 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
27451464 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
27451493 TATATGGCCCATCAAGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
27451522 TATA
1 TATA
27451526 GTCATGCTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 18 0.32
29 39 0.68
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:27451772 original size:16 final size:16
Alignment explanation
Indices: 27451738--27451780 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
27451728 ATAGTCAAAC
*
27451738 TTTCAGCTTTTCAGTA
1 TTTCAGCTTTTCAGCA
27451754 TTTCAGCTTTTC-GACA
1 TTTCAGCTTTTCAG-CA
*
27451770 TTTCGGCTTTT
1 TTTCAGCTTTT
27451781 ACCGATCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 1 0.04
16 23 0.96
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:27452548 original size:4 final size:4
Alignment explanation
Indices: 27452535--27452564 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
27452525 ATATTTATAC
27452535 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
27452565 TACACCTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:27455134 original size:23 final size:22
Alignment explanation
Indices: 27455097--27455139 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
27455087 GATATGCCAT
27455097 TTTGAATGATAGAATTTGTTTAA
1 TTTGAATGATAGAA-TTGTTTAA
* *
27455120 TTTGAATGCTTGAATTGTTT
1 TTTGAATGATAGAATTGTTT
27455140 GGTTTATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (22 bp):
TTTGAATGATAGAATTGTTTAA
Found at i:27457043 original size:39 final size:38
Alignment explanation
Indices: 27457011--27457188 Score: 241
Period size: 39 Copynumber: 4.5 Consensus size: 38
27457001 ACAAAGCATG
* * * *
27457011 CGGGACTTTAAGCCCGATATAATACAAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGATATAACACCAGCACGAATGCCTT
*
27457050 CGGGACTTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCC-CGATATAACACCAGCACGAATGCCTT
27457090 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCC-GATATAACACCAGCACGAATGCCTT
27457129 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCC-GATATAACACCAGCACGAATGCCTT
27457168 CGGGACTTAGCCCGAATATAA
1 CGGGACTTAGCCCG-ATATAA
27457189 TTCCCCATTA
Statistics
Matches: 129, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
38 5 0.04
39 112 0.87
40 12 0.09
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (38 bp):
CGGGACTTAGCCCGATATAACACCAGCACGAATGCCTT
Found at i:27462199 original size:38 final size:38
Alignment explanation
Indices: 27462136--27462288 Score: 191
Period size: 38 Copynumber: 4.0 Consensus size: 38
27462126 AATATGATAT
*
27462136 CCGGGCTTAAAATCCCGCAGGCTTCGTGCTGGTAATATAA
1 CCGGG-TT-AAATCCCGCAGACTTCGTGCTGGTAATATAA
* *
27462176 CGGGGTTAAATCCCGCAGACTTCGTGCTGGTAATATAT
1 CCGGGTTAAATCCCGCAGACTTCGTGCTGGTAATATAA
* *
27462214 CCAGGTTAAATCCCGCA-AGCTTCGTGCTGGTATTATAA
1 CCGGGTTAAATCCCGCAGA-CTTCGTGCTGGTAATATAA
* * * *
27462252 CCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATA
1 CCGGGTTAAATCCCGCAGACTTCGTGCTGGTAATATA
27462289 TTCGGGCCTT
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
37 1 0.01
38 93 0.93
39 2 0.02
40 4 0.04
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAATCCCGCAGACTTCGTGCTGGTAATATAA
Found at i:27462279 original size:76 final size:76
Alignment explanation
Indices: 27462145--27462289 Score: 227
Period size: 76 Copynumber: 1.9 Consensus size: 76
27462135 TCCGGGCTTA
* * * *
27462145 AAATCCCGCAGGCTTCGTGCTGGTAATATAACGGGGTTAAATCCCGCAGACTTCGTGCTGGTAAT
1 AAATCCCGCAAGCTTCGTGCTGGTAATATAACCGGGTTAAATCCCGCAGACCTAGTGCTGGTAAT
27462210 ATATCCAGGTT
66 ATATCCAGGTT
* * *
27462221 AAATCCCGCAAGCTTCGTGCTGGTATTATAACCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 AAATCCCGCAAGCTTCGTGCTGGTAATATAACCGGGTTAAATCCCGCAGACCTAGTGCTGGTAAT
27462286 ATAT
66 ATAT
27462290 TCGGGCCTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 62 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (76 bp):
AAATCCCGCAAGCTTCGTGCTGGTAATATAACCGGGTTAAATCCCGCAGACCTAGTGCTGGTAAT
ATATCCAGGTT
Found at i:27479907 original size:24 final size:24
Alignment explanation
Indices: 27479873--27479919 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
27479863 ATAAAAACTA
* *
27479873 AACCCTGAAAACCTAAAAACAAAG
1 AACCCTCAAAACATAAAAACAAAG
*
27479897 AACCCTCAAAACATAAACACAAA
1 AACCCTCAAAACATAAAAACAAA
27479920 ATTCTCTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.60, C:0.28, G:0.04, T:0.09
Consensus pattern (24 bp):
AACCCTCAAAACATAAAAACAAAG
Found at i:27482860 original size:18 final size:18
Alignment explanation
Indices: 27482829--27482871 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
27482819 TTACAAACAA
* *
27482829 TTTATTTATTTTAAATAT
1 TTTATATATATTAAATAT
*
27482847 TTTATATATATTAATTAT
1 TTTATATATATTAAATAT
27482865 TTT-TATA
1 TTTATATA
27482872 AACATTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTATATATATTAAATAT
Found at i:27482947 original size:44 final size:44
Alignment explanation
Indices: 27482894--27482997 Score: 106
Period size: 44 Copynumber: 2.3 Consensus size: 44
27482884 ACATGTAAAA
* *
27482894 ATTATTATATATTATTTTTAT-TATTTATCAGGT-TAT-TTGTATTTT
1 ATTA-TATATATTATTTATATATATTT-T-A-GTATATATTATATTTT
* * *
27482939 ATTATATATTTTATATATATATATTTTATTATATATTATATTTT
1 ATTATATATATTATTTATATATATTTTAGTATATATTATATTTT
27482983 ATTATATATATTATT
1 ATTATATATATTATT
27482998 CCCTATATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
42 1 0.02
43 4 0.08
44 35 0.71
45 9 0.18
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (44 bp):
ATTATATATATTATTTATATATATTTTAGTATATATTATATTTT
Found at i:27482961 original size:15 final size:15
Alignment explanation
Indices: 27482941--27482994 Score: 83
Period size: 15 Copynumber: 3.5 Consensus size: 15
27482931 TGTATTTTAT
27482941 TATATATTTTATATA
1 TATATATTTTATATA
27482956 TATATATTTTATTATA
1 TATATATTTTA-TATA
27482972 TATTATATTTTAT-TA
1 TA-TATATTTTATATA
27482987 TATATATT
1 TATATATT
27482995 ATTCCCTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
15 15 0.41
16 7 0.19
17 9 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATATATTTTATATA
Found at i:27482996 original size:12 final size:12
Alignment explanation
Indices: 27482937--27482997 Score: 69
Period size: 10 Copynumber: 5.4 Consensus size: 12
27482927 TATTTGTATT
*
27482937 TTATTATATATT
1 TTATTATATATA
27482949 TTATATATATATA
1 TTAT-TATATATA
27482962 TT-TTAT-TATA
1 TTATTATATATA
27482972 -TATTATAT-T-
1 TTATTATATATA
27482981 TTATTATATATA
1 TTATTATATATA
27482993 TTATT
1 TTATT
27482998 CCCTATATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
9 1 0.02
10 17 0.40
11 5 0.12
12 10 0.24
13 9 0.21
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATTATATATA
Found at i:27483016 original size:35 final size:31
Alignment explanation
Indices: 27482943--27483026 Score: 96
Period size: 35 Copynumber: 2.5 Consensus size: 31
27482933 TATTTTATTA
*
27482943 TATATTTTATATATATATATTTTATTATATAT
1 TATATTTTAT-TATATATATTTTACTATATAT
*
27482975 TATATTTTATTATATATATTATTCCCTATATTAT
1 TATATTTTATTATATATATT-TT-ACTATA-TAT
*
27483009 CTTTATTTTATTATATAT
1 -TATATTTTATTATATAT
27483027 TATTCTATTA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
31 10 0.22
32 12 0.27
33 4 0.09
34 3 0.07
35 16 0.36
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (31 bp):
TATATTTTATTATATATATTTTACTATATAT
Found at i:27483027 original size:12 final size:12
Alignment explanation
Indices: 27482933--27482980 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
27482923 AGGTTATTTG
27482933 TATTTTATTATA
1 TATTTTATTATA
27482945 TATTTTATATATATA
1 TA-TTT-TAT-TATA
27482960 TATTTTATTATA
1 TATTTTATTATA
*
27482972 TATTATATT
1 TATTTTATT
27482981 TTATTATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 14 0.44
13 6 0.19
14 6 0.19
15 6 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:27483197 original size:20 final size:18
Alignment explanation
Indices: 27483166--27483215 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
27483156 ATATTATTAT
* *
27483166 TTTTATAAATATATTAAG
1 TTTTATATATATAGTAAG
*
27483184 TTATTATATCATATAGTATG
1 TT-TTATAT-ATATAGTAAG
27483204 TTTTATATATAT
1 TTTTATATATAT
27483216 TAATCGTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 6 0.22
19 11 0.41
20 10 0.37
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (18 bp):
TTTTATATATATAGTAAG
Found at i:27483332 original size:19 final size:19
Alignment explanation
Indices: 27483287--27483333 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
27483277 TATGTTCATA
*
27483287 ATTTGTTTATTTATTTTTGT
1 ATTT-TTTATTTATTTTAGT
27483307 ATTTTTTATTTA-TTTAGT
1 ATTTTTTATTTATTTTAGT
27483325 ATTGTTTTA
1 ATT-TTTTA
27483334 GTAGGTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 8 0.32
19 13 0.52
20 4 0.16
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (19 bp):
ATTTTTTATTTATTTTAGT
Found at i:27483379 original size:18 final size:18
Alignment explanation
Indices: 27483358--27483392 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27483348 ATCTCATATA
*
27483358 TTATTTGTTATTTTTATT
1 TTATTTATTATTTTTATT
*
27483376 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
27483393 ATATTCGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (18 bp):
TTATTTATTATTTTTATT
Found at i:27483548 original size:106 final size:106
Alignment explanation
Indices: 27483431--27483630 Score: 253
Period size: 106 Copynumber: 1.9 Consensus size: 106
27483421 TTGATTTAAG
* * * * *
27483431 TTATATTTGCATGAAATATT-AT-TATA-TATGTAATTTATGTTGTTATATTCATTATTTTCTAT
1 TTATATCTGCATGAAAGATTAATGTATATTATATAATTAATGTTG-T-TATTCATCATTTTCTAT
* * *
27483493 GTTATATTTTGCATGAAATATTAATGCATGTATATTTATGTTAT
64 ATTATA-GTTGCATGAAATATTAAAGCATGTATATTTATGTTAT
* *
27483537 TTATATCTGCATGAAAGGTTAATGTATATTATATAATTAATGTTGTTATTCGTCATTTTCTATAT
1 TTATATCTGCATGAAAGATTAATGTATATTATATAATTAATGTTGTTATTCATCATTTTCTATAT
*
27483602 TATAGTTGCATGAAATGTTAAAGCATGTA
66 TATAGTTGCATGAAATATTAAAGCATGTA
27483631 GTTTATATTG
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
106 39 0.49
107 22 0.28
108 5 0.06
109 14 0.17
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (106 bp):
TTATATCTGCATGAAAGATTAATGTATATTATATAATTAATGTTGTTATTCATCATTTTCTATAT
TATAGTTGCATGAAATATTAAAGCATGTATATTTATGTTAT
Found at i:27486535 original size:17 final size:17
Alignment explanation
Indices: 27486496--27486535 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
27486486 ACACCATTCC
*
27486496 AATACTCAATTCATTTCA
1 AATA-TCAATTCATATCA
27486514 AATATCAATTCATATCA
1 AATATCAATTCATATCA
*
27486531 CATAT
1 AATAT
27486536 ATACATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATCAATTCATATCA
Found at i:27495126 original size:47 final size:48
Alignment explanation
Indices: 27494883--27495154 Score: 185
Period size: 47 Copynumber: 5.8 Consensus size: 48
27494873 TGGGTTAATG
* * * *
27494883 TGAGCTAGTGTAAG-CCATGTATGGTACAT-GCATCGGC-C-ATATTA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGA
* * * *
27494927 TGAGAGCCAGTGTAAGACCACGTCTAGGATATGGCATCGGCATCGAGATGA
1 T--GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGATGA
* * *
27494978 -GTGCTAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCCTTGAGACT--
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAGA-TGA
* ** * * *
27495023 TAAGCCGGTGTAA-AACATGTCTGGGACAT-GCATTGGCTACAAGATGA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGATGA
* *
27495070 T-AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-A
1 TGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGA
* * *
27495116 TGAGCTAGTGTAAGATCATGTCTGGGATATGGAATCGGC
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
27495155 ACCTTACCCC
Statistics
Matches: 175, Mismatches: 34, Indels: 35
0.72 0.14 0.14
Matches are distributed among these distances:
44 1 0.01
45 4 0.02
46 63 0.36
47 74 0.42
48 28 0.16
50 1 0.01
51 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGA
Found at i:27499404 original size:37 final size:37
Alignment explanation
Indices: 27499354--27499432 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27499344 TTATTACGAA
* * *
27499354 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27499391 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27499428 GTCTT
1 GTCTT
27499433 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27499629 original size:47 final size:47
Alignment explanation
Indices: 27499551--27500316 Score: 1335
Period size: 47 Copynumber: 16.2 Consensus size: 47
27499541 CCCTTCGGGA
* * * * * *
27499551 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27499598 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499645 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499692 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499739 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499786 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499833 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499880 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499927 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27499974 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27500021 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27500068 CTTATCACATATATATACACTTTCACA-TCTATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTC-ATCACATCGGCCATTAGGC
*
27500117 CTTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27500166 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27500213 CTTATCACATATATATACACTTTCACATTCAT--CATCGG-CATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27500259 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
27500307 C-TATCACATA
1 CTTATCACATA
27500317 GAATCCTAAA
Statistics
Matches: 696, Mismatches: 13, Indels: 20
0.95 0.02 0.03
Matches are distributed among these distances:
44 21 0.03
46 22 0.03
47 536 0.77
48 4 0.01
49 112 0.16
50 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.