Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Gbar_A01 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 115637255 ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31 Warning! 5450143 characters in sequence are not A, C, G, or T File 97 of 349 Found at i:30000966 original size:27 final size:27 Alignment explanation
Indices: 30000558--30000966 Score: 405 Period size: 27 Copynumber: 15.1 Consensus size: 27 30000548 AAGTACTCCC 30000558 GATTTACAGAATTACCGTTTTACCC-T 1 GATTTACAGAATTACCGTTTTACCCTT * * 30000584 CAGTTTACAGAATTACCGTTTTACCCTC 1 GA-TTTACAGAATTACCGTTTTACCCTT * * 30000612 GATTTACAGAATTATCGTTTTACCCTC 1 GATTTACAGAATTACCGTTTTACCCTT * ** ** 30000639 AATTTACAGAATTACTATTTTACCCAC 1 GATTTACAGAATTACCGTTTTACCCTT * 30000666 GATTTACAGAATTACCGTTTTACCCTC 1 GATTTACAGAATTACCGTTTTACCCTT ** * 30000693 GATTTGTAAAATTACCGTTTTACCCTT 1 GATTTACAGAATTACCGTTTTACCCTT * * 30000720 GATTTACAGAATTACTGGTTTACCC-T 1 GATTTACAGAATTACCGTTTTACCCTT * * * 30000746 CAGTTTACAAAATTATCGTTTTA-CCTT 1 GA-TTTACAGAATTACCGTTTTACCCTT * 30000773 CGATTTACAGAATTACCATTTTACCC-T 1 -GATTTACAGAATTACCGTTTTACCCTT * * 30000800 CAGTTTACAGAATTACTGTTTTACCCTT 1 GA-TTTACAGAATTACCGTTTTACCCTT ** * * 30000828 GATTTGTAAAATTACCGTTTTACCCTC 1 GATTTACAGAATTACCGTTTTACCCTT ** * * 30000855 GATTTGTAAAATTACTGTTTTACCCTT 1 GATTTACAGAATTACCGTTTTACCCTT * * * 30000882 AATTTACAGAATTACTGGTTTACCC-T 1 GATTTACAGAATTACCGTTTTACCCTT * * * * 30000908 CAGTTTACAAAATTATCGTTTTACCCTC 1 GA-TTTACAGAATTACCGTTTTACCCTT * 30000936 GATTTACAGAATTACCATTTTACCCTT 1 GATTTACAGAATTACCGTTTTACCCTT 30000963 GATT 1 GATT 30000967 GTGAAATTAC Statistics Matches: 315, Mismatches: 58, Indels: 19 0.80 0.15 0.05 Matches are distributed among these distances: 26 8 0.03 27 300 0.95 28 7 0.02 ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40 Consensus pattern (27 bp): GATTTACAGAATTACCGTTTTACCCTT Found at i:30001001 original size:27 final size:27 Alignment explanation
Indices: 30000971--30001166 Score: 248 Period size: 27 Copynumber: 7.3 Consensus size: 27 30000961 TTGATTGTGA * * 30000971 AATTACTGAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCCTATAGGGTAG * 30000998 AATTTCCGAAATACCCCTATAGGGTAG 1 AATTACCGAAATACCCCTATAGGGTAG * * * 30001025 AATTACTGAAATACCCTTATAGGATAG 1 AATTACCGAAATACCCCTATAGGGTAG * 30001052 AATTACCAAAATACCCCTATAGGGTAG 1 AATTACCGAAATACCCCTATAGGGTAG * * 30001079 AATTATCGAAATACCCTTATAGGGTAG 1 AATTACCGAAATACCCCTATAGGGTAG * * 30001106 AAATACCGAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCCTATAGGGTAG * * * * * 30001133 AATTACCGAGATACCCTTGTGGGGTAA 1 AATTACCGAAATACCCCTATAGGGTAG 30001160 AATTACC 1 AATTACC 30001167 ATTTTGCCCC Statistics Matches: 146, Mismatches: 23, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 27 146 1.00 ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26 Consensus pattern (27 bp): AATTACCGAAATACCCCTATAGGGTAG Found at i:30001403 original size:27 final size:26 Alignment explanation
Indices: 30001365--30001447 Score: 112 Period size: 27 Copynumber: 3.1 Consensus size: 26 30001355 CGGAGGAAGC * 30001365 GTTCTGGTGGCTATGCCACAAATATCT 1 GTTCTGGTGGCTCTGCCAC-AATATCT 30001392 GTTCTGGTGGCTCTGCCACAATATCT 1 GTTCTGGTGGCTCTGCCACAATATCT * * * 30001418 GTATTTGGTGACTCTGTCACAATATCT 1 GT-TCTGGTGGCTCTGCCACAATATCT 30001445 GTT 1 GTT 30001448 GACCGATCGA Statistics Matches: 51, Mismatches: 4, Indels: 3 0.88 0.07 0.05 Matches are distributed among these distances: 26 10 0.20 27 41 0.80 ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37 Consensus pattern (26 bp): GTTCTGGTGGCTCTGCCACAATATCT Found at i:30001568 original size:22 final size:22 Alignment explanation
Indices: 30001542--30001593 Score: 59 Period size: 22 Copynumber: 2.4 Consensus size: 22 30001532 TTAATATTTC 30001542 TGTGCCAACCTAAATATGGCTT 1 TGTGCCAACCTAAATATGGCTT * * * * 30001564 TGTGCCATCTTGACTATGGCTT 1 TGTGCCAACCTAAATATGGCTT * 30001586 CGTGCCAA 1 TGTGCCAA 30001594 ACGTATTTAC Statistics Matches: 24, Mismatches: 6, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 22 24 1.00 ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33 Consensus pattern (22 bp): TGTGCCAACCTAAATATGGCTT Found at i:30001780 original size:27 final size:27 Alignment explanation
Indices: 30001758--30001830 Score: 87 Period size: 27 Copynumber: 2.7 Consensus size: 27 30001748 TAGGTGGGTT * 30001758 TGCCACATTATCTG-ATTCTGGTGGCTC 1 TGCCACAATATCTGTA-TCTGGTGGCTC * 30001785 TGCCACAATATCTGTATCTGGTGACTC 1 TGCCACAATATCTGTATCTGGTGGCTC * * 30001812 TGTCACGATATCTGT-TCTG 1 TGCCACAATATCTGTATCTG 30001831 TCAGCCATGC Statistics Matches: 41, Mismatches: 4, Indels: 3 0.85 0.08 0.06 Matches are distributed among these distances: 26 4 0.10 27 36 0.88 28 1 0.02 ACGTcount: A:0.18, C:0.25, G:0.21, T:0.37 Consensus pattern (27 bp): TGCCACAATATCTGTATCTGGTGGCTC Found at i:30001958 original size:6 final size:6 Alignment explanation
Indices: 30001949--30002050 Score: 86 Period size: 6 Copynumber: 16.8 Consensus size: 6 30001939 TTGCATTCAC * * * 30001949 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTA ATTCTG ATTCTG ATTCTG 1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG * * 30001998 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTA 1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG 30002046 ATTCT 1 ATTCT 30002051 CATTTTGGTT Statistics Matches: 80, Mismatches: 7, Indels: 18 0.76 0.07 0.17 Matches are distributed among these distances: 5 6 0.08 6 67 0.84 7 5 0.06 8 2 0.03 ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49 Consensus pattern (6 bp): ATTCTG Found at i:30002014 original size:30 final size:30 Alignment explanation
Indices: 30001949--30002050 Score: 143 Period size: 30 Copynumber: 3.4 Consensus size: 30 30001939 TTGCATTCAC * * 30001949 ATTCTGATTCTGATTCTGTCACCTAATTCTA 1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG 30001980 ATTCTGATTCTGATTCTGTTACTAATAT-TG 1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG * 30002010 ATTCTGATTCTGATTCTGTTACTGATTCTG 1 ATTCTGATTCTGATTCTGTTACTAATTCTG * 30002040 ATTCTAATTCT 1 ATTCTGATTCT 30002051 CATTTTGGTT Statistics Matches: 65, Mismatches: 4, Indels: 5 0.88 0.05 0.07 Matches are distributed among these distances: 29 1 0.02 30 43 0.66 31 21 0.32 ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49 Consensus pattern (30 bp): ATTCTGATTCTGATTCTGTTACTAATTCTG Found at i:30011184 original size:3 final size:3 Alignment explanation
Indices: 30011176--30011218 Score: 86 Period size: 3 Copynumber: 14.3 Consensus size: 3 30011166 TAGGTTCATA 30011176 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T 1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T 30011219 GTGTCATGAA Statistics Matches: 40, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 40 1.00 ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35 Consensus pattern (3 bp): TAC Found at i:30014250 original size:16 final size:16 Alignment explanation
Indices: 30014209--30014253 Score: 58 Period size: 15 Copynumber: 2.9 Consensus size: 16 30014199 AATTTTATAA 30014209 AGTACTTAA-TTTTTC 1 AGTACTTAATTTTTTC ** 30014224 AACACTT-ATTTTTTC 1 AGTACTTAATTTTTTC 30014239 AGTACTTAATTTTTT 1 AGTACTTAATTTTTT 30014254 TTAGTTTATC Statistics Matches: 24, Mismatches: 4, Indels: 3 0.77 0.13 0.10 Matches are distributed among these distances: 14 1 0.04 15 16 0.67 16 7 0.29 ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56 Consensus pattern (16 bp): AGTACTTAATTTTTTC Found at i:30021497 original size:42 final size:42 Alignment explanation
Indices: 30021438--30021547 Score: 168 Period size: 42 Copynumber: 2.6 Consensus size: 42 30021428 AGGGTTACTA * 30021438 AGACTACGTGTAAGACCATATCT-GGGATATGGAATCGATATG 1 AGACTTCGTGTAAGACCATATCTAGGG-TATGGAATCGATATG * * 30021480 AGACTTCTTGTAAGACCATATCTAGGGTATGGCATCGATATG 1 AGACTTCGTGTAAGACCATATCTAGGGTATGGAATCGATATG * 30021522 AGACTTCGTGTAAGACCATAGCTAGG 1 AGACTTCGTGTAAGACCATATCTAGG 30021548 CTATTAGCAT Statistics Matches: 62, Mismatches: 5, Indels: 2 0.90 0.07 0.03 Matches are distributed among these distances: 42 59 0.95 43 3 0.05 ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27 Consensus pattern (42 bp): AGACTTCGTGTAAGACCATATCTAGGGTATGGAATCGATATG Found at i:30024036 original size:16 final size:16 Alignment explanation
Indices: 30024017--30024047 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 30024007 CTTCTTCACT 30024017 TACTCACTTACTTAAA 1 TACTCACTTACTTAAA * 30024033 TACTTACTTACTTAA 1 TACTCACTTACTTAA 30024048 TCAAATTTAT Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42 Consensus pattern (16 bp): TACTCACTTACTTAAA Found at i:30024053 original size:20 final size:20 Alignment explanation
Indices: 30024014--30024053 Score: 53 Period size: 20 Copynumber: 2.0 Consensus size: 20 30024004 AAACTTCTTC * * 30024014 ACTTACTCACTTACTTAAAT 1 ACTTACTCACTTAATCAAAT * 30024034 ACTTACTTACTTAATCAAAT 1 ACTTACTCACTTAATCAAAT 30024054 TTATTAATAC Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 20 17 1.00 ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40 Consensus pattern (20 bp): ACTTACTCACTTAATCAAAT Found at i:30024426 original size:54 final size:53 Alignment explanation
Indices: 30024297--30024498 Score: 178 Period size: 55 Copynumber: 3.8 Consensus size: 53 30024287 TTGAAACATT * * * 30024297 ACCATTGCTATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC 1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC * * 30024350 ACCAATGCCATGCCTT-AGCATGGTCTT-CATGGGA-CCTTTGCCTTATAGTAACTT 1 ACCAATGCCATGTCTTGA-CATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC * *** * 30024404 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT 1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTC * * * * * 30024458 ACCAATTGACATGCCTTGGCACGGTCTTACATGGTATCCTT 1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT 30024499 AAACCCTAAT Statistics Matches: 122, Mismatches: 18, Indels: 16 0.78 0.12 0.10 Matches are distributed among these distances: 51 2 0.02 52 16 0.13 53 26 0.21 54 34 0.28 55 42 0.34 56 2 0.02 ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35 Consensus pattern (53 bp): ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC Found at i:30024498 original size:55 final size:52 Alignment explanation
Indices: 30024254--30024498 Score: 196 Period size: 54 Copynumber: 4.6 Consensus size: 52 30024244 CTTACTATTT * * ** * 30024254 CCATGACTTGTCATGGTCTTATGTGGTATCCTT---TT-GAAACATTACCATTG 1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AAC-TTACCAATG * * * * 30024304 CTATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG 1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA-GAACTTACCAATG * * * 30024357 CCATGCCTTAGCATGGTCTT-CATGGGA-CCTTTGCCTTATAGTAACTTATCAATG 1 CCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCC-T-TAG-AACTTACCAATG * * * * 30024411 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAATTG 1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AA-CTTACCAA-TG * * 30024466 ACATGCCTTGGCACGGTCTTACATGGTATCCTT 1 CCATGCCTTGGCATGGTCTTACATGGTATCCTT 30024499 AAACCCTAAT Statistics Matches: 154, Mismatches: 28, Indels: 21 0.76 0.14 0.10 Matches are distributed among these distances: 50 28 0.18 51 2 0.01 52 11 0.07 53 32 0.21 54 40 0.26 55 39 0.25 56 2 0.01 ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36 Consensus pattern (52 bp): CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAACTTACCAATG Found at i:30032322 original size:23 final size:23 Alignment explanation
Indices: 30032291--30032346 Score: 105 Period size: 23 Copynumber: 2.5 Consensus size: 23 30032281 TTCCATCCCA 30032291 AAAG-ACATCAATTCATCCATAG 1 AAAGAACATCAATTCATCCATAG 30032313 AAAGAACATCAATTCATCCATAG 1 AAAGAACATCAATTCATCCATAG 30032336 AAAGAACATCA 1 AAAGAACATCA 30032347 TATATGCTTA Statistics Matches: 33, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 22 4 0.12 23 29 0.88 ACGTcount: A:0.50, C:0.21, G:0.09, T:0.20 Consensus pattern (23 bp): AAAGAACATCAATTCATCCATAG Found at i:30040476 original size:44 final size:46 Alignment explanation
Indices: 30040420--30040539 Score: 147 Period size: 44 Copynumber: 2.6 Consensus size: 46 30040410 GTGTATACGT ** 30040420 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-ACGA-AATTTAG 1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAAC-ATAATCGAG * * * * 30040465 GC-GATGCATGTCCCAGACACGTCTTACACTGGCTAACATCATCGCG 1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-AACATAATCGAG 30040511 GCTGATGCATGTCCCAGACATGTCTTACA 1 GCTGATGCATGTCCCAGACATGTCTTACA 30040540 TTGGCACTCA Statistics Matches: 64, Mismatches: 7, Indels: 6 0.83 0.09 0.08 Matches are distributed among these distances: 44 29 0.45 45 3 0.05 46 7 0.11 47 25 0.39 ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25 Consensus pattern (46 bp): GCTGATGCATGTCCCAGACATGTCTTACACTAGCAACATAATCGAG Found at i:30040527 original size:47 final size:46 Alignment explanation
Indices: 30040415--30040631 Score: 167 Period size: 47 Copynumber: 4.7 Consensus size: 46 30040405 CTCTTGTGTA * * * 30040415 TACGTGCTGATGCATGTCCCAGACATGTCTTACACTAGC-ACGA-AATT 1 TACG-GCTGATGCATGTCCCAGACACGTCTTACACTGGCAAC-ATCA-T 30040462 TA-GGC-GATGCATGTCCCAGACACGTCTTACACTGGCTAACATCAT 1 TACGGCTGATGCATGTCCCAGACACGTCTTACACTGGC-AACATCAT ** * * * * * 30040507 CGCGGCTGATGCATGTCCCAGACATGTCTTACATTGGCACTCACCTT 1 TACGGCTGATGCATGTCCCAGACACGTCTTACACTGGCA-ACATCAT * ** * * * 30040554 TAC-GCCGATGCCATGTCCCAGACGTGGTCTTACACGGGCTATCATGA- 1 TACGGCTGATG-CATGTCCCAGAC-ACGTCTTACACTGGC-AACATCAT * 30040601 TACGACTGATGCATGTCCCAGACACGTCTTA 1 TACGGCTGATGCATGTCCCAGACACGTCTTA 30040632 AACTAGCCCT Statistics Matches: 136, Mismatches: 24, Indels: 21 0.75 0.13 0.12 Matches are distributed among these distances: 44 29 0.21 45 4 0.03 46 20 0.15 47 63 0.46 48 19 0.14 49 1 0.01 ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26 Consensus pattern (46 bp): TACGGCTGATGCATGTCCCAGACACGTCTTACACTGGCAACATCAT Found at i:30040622 original size:94 final size:91 Alignment explanation
Indices: 30040370--30040687 Score: 280 Period size: 94 Copynumber: 3.4 Consensus size: 91 30040360 CTCCATCGAG * * * * ** 30040370 GCCGATGCCATGTCCGAGACATGGTTTTACACTAGCTCTTGTGTATACGTGCTGATGCATGTCCC 1 GCCGATGCCATGTCCCAGAC-TGGTCTTACACTGGCTATCATG-ATACG-GCTGATGCATGTCCC * 30040435 AGACATGTCTTACACTAGCACGAAATTTA 63 AGACATGTCTTACACTAGCACCAAATTTA * ** * * * 30040464 GGCGATG-CATGTCCCAGACACGTCTTACACTGGCTAACATCATCGCGGCTGATGCATGTCCCAG 1 GCCGATGCCATGTCCCAGACTGGTCTTACACTGGCTATCATGAT-ACGGCTGATGCATGTCCCAG * * ** 30040528 ACATGTCTTACATTGGCACTCACCTTTA 65 ACATGTCTTACACTAGCAC-CAAATTTA * * 30040556 CGCCGATGCCATGTCCCAGACGTGGTCTTACACGGGCTATCATGATACGACTGATGCATGTCCCA 1 -GCCGATGCCATGTCCCAGAC-TGGTCTTACACTGGCTATCATGATACGGCTGATGCATGTCCCA * * * ** * 30040621 GACACGTCTTAAACTAGCCCTCGTATCAATA 64 GACATGTCTTACACTAGCAC-CAAAT--TTA * * 30040652 -CCGATGCCATGTCCCAGACATGTTCTTATACTGGCT 1 GCCGATGCCATGTCCCAGAC-TGGTCTTACACTGGCT 30040688 CTCACATAAC Statistics Matches: 179, Mismatches: 38, Indels: 14 0.77 0.16 0.06 Matches are distributed among these distances: 91 36 0.20 92 20 0.11 93 17 0.09 94 85 0.47 95 19 0.11 96 2 0.01 ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27 Consensus pattern (91 bp): GCCGATGCCATGTCCCAGACTGGTCTTACACTGGCTATCATGATACGGCTGATGCATGTCCCAGA CATGTCTTACACTAGCACCAAATTTA Found at i:30042884 original size:23 final size:23 Alignment explanation
Indices: 30042845--30042893 Score: 55 Period size: 23 Copynumber: 2.1 Consensus size: 23 30042835 TCAAGATGGG * * 30042845 AAATAGGAAAGAGAAAGAATAGA 1 AAATAGGAAAGAAAAAGAAGAGA * 30042868 AAAT-GGAAAGACAAAAGGAGAGA 1 AAATAGGAAAGA-AAAAGAAGAGA 30042891 AAA 1 AAA 30042894 GAATAGATGA Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 22 7 0.32 23 15 0.68 ACGTcount: A:0.65, C:0.02, G:0.27, T:0.06 Consensus pattern (23 bp): AAATAGGAAAGAAAAAGAAGAGA Found at i:30048036 original size:25 final size:24 Alignment explanation
Indices: 30047968--30048091 Score: 115 Period size: 25 Copynumber: 5.0 Consensus size: 24 30047958 AAATAGAACA * * 30047968 CCACAAAGGTTTTACAGAGAGTTCT 1 CCACAAAGGCTTT-CAGAGAATTCT * * * 30047993 CCACAAAGGCCTTACAGAGTATTCG 1 CCACAAAGG-CTTTCAGAGAATTCT * 30048018 CCACAAAGGCTTTCTAGAGAATTTT 1 CCACAAAGGCTTTC-AGAGAATTCT * 30048043 CC-CTAAAGGCTTTCAAGAGAATTCA 1 CCAC-AAAGGCTTTC-AGAGAATTCT * 30048068 CCACAAAGGCTTTCCAGATAATTC 1 CCACAAAGGCTTT-CAGAGAATTC 30048092 GTGTTTACTG Statistics Matches: 81, Mismatches: 13, Indels: 10 0.78 0.12 0.10 Matches are distributed among these distances: 24 5 0.06 25 72 0.89 26 4 0.05 ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26 Consensus pattern (24 bp): CCACAAAGGCTTTCAGAGAATTCT Found at i:30051361 original size:43 final size:43 Alignment explanation
Indices: 30051312--30051463 Score: 123 Period size: 43 Copynumber: 3.5 Consensus size: 43 30051302 CCCAGACGAA * * 30051312 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGG 1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG * * * * * * 30051355 GTCTTACACGAAATCATACA-CGATGCTAATGTCCCAGAAATG 1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG * * * * 30051397 GTCTTACATGTAGATCTCAA-ATCGATGCCAAC-GTTCCAGAC-GTG 1 GTCTTACACG-AAATC-AAATATCGATGCC-ACTGTCCCAGACAG-G * 30051441 GTCTTACACGAAATCACATATCG 1 GTCTTACACGAAATCAAATATCG 30051464 GAATCCCATG Statistics Matches: 82, Mismatches: 21, Indels: 12 0.71 0.18 0.10 Matches are distributed among these distances: 42 28 0.34 43 29 0.35 44 24 0.29 45 1 0.01 ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26 Consensus pattern (43 bp): GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG Found at i:30051392 original size:42 final size:44 Alignment explanation
Indices: 30051331--30051456 Score: 125 Period size: 42 Copynumber: 2.9 Consensus size: 44 30051321 GTAATCAAAT * * 30051331 ATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAT-AC 1 ATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATCAA * * * * * 30051374 A-CGATGCTAATGTCCCAGAAATGGTCTTACATGTAGATC-TCAA 1 ATCGATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCATCAA * * 30051417 ATCGATGCCAACGTTCCAGAC-GTGGTCTTACACGAAATCA 1 ATCGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCA 30051457 CATATCGGAA Statistics Matches: 64, Mismatches: 14, Indels: 9 0.74 0.16 0.10 Matches are distributed among these distances: 42 28 0.44 43 11 0.17 44 25 0.39 ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24 Consensus pattern (44 bp): ATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATCAA Found at i:30052587 original size:13 final size:13 Alignment explanation
Indices: 30052569--30052593 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 30052559 ACAAAAGATA 30052569 AAATTTTCACACG 1 AAATTTTCACACG 30052582 AAATTTTCACAC 1 AAATTTTCACAC 30052594 ATATTACATA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32 Consensus pattern (13 bp): AAATTTTCACACG Found at i:30054258 original size:45 final size:46 Alignment explanation
Indices: 30054148--30054329 Score: 267 Period size: 46 Copynumber: 4.0 Consensus size: 46 30054138 TATATATACA * * * * * 30054148 CATCTCATACATATCTCACATTAGCCATTTGGCTTCACCACATATC 1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC * * 30054194 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATAT- 1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC * * 30054239 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC 1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC * 30054285 CATCTCATACACATTTCGCACTAGCCATTCGGCTTTACCACATAT 1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT 30054330 ATACACTTCC Statistics Matches: 125, Mismatches: 10, Indels: 2 0.91 0.07 0.01 Matches are distributed among these distances: 45 45 0.36 46 80 0.64 ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34 Consensus pattern (46 bp): CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC Found at i:30054303 original size:91 final size:91 Alignment explanation
Indices: 30054148--30054329 Score: 274 Period size: 91 Copynumber: 2.0 Consensus size: 91 30054138 TATATATACA * * * 30054148 CATCTCATACATATCTCACATTAGCCATTTGGCTTCACCACATATCCATCTCATACACGTTTCGC 1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATCCATCTCATACACATTTCGC * * 30054213 ATTAGCCATTCGGCTTTACCTCATAT 66 ACTAGCCATTCGGCTTTACCACATAT * * * * * 30054239 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACATTTCGC 1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATCCATCTCATACACATTTCGC 30054304 ACTAGCCATTCGGCTTTACCACATAT 66 ACTAGCCATTCGGCTTTACCACATAT 30054330 ATACACTTCC Statistics Matches: 81, Mismatches: 10, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 91 81 1.00 ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34 Consensus pattern (91 bp): CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATCCATCTCATACACATTTCGC ACTAGCCATTCGGCTTTACCACATAT Found at i:30054372 original size:22 final size:22 Alignment explanation
Indices: 30054346--30054421 Score: 59 Period size: 22 Copynumber: 3.3 Consensus size: 22 30054336 TTCCACGTTC 30054346 ATCACATTGGCCATTCTGCCTT 1 ATCACATTGGCCATTCTGCCTT * 30054368 ATCACATATATG-CATGT-T-CACATT 1 ATCACAT-T-GGCCAT-TCTGC-C-TT * 30054392 CATCACATTGGCCATTCGGCCTT 1 -ATCACATTGGCCATTCTGCCTT 30054415 ATCACAT 1 ATCACAT 30054422 ATATGCATAT Statistics Matches: 42, Mismatches: 3, Indels: 18 0.67 0.05 0.29 Matches are distributed among these distances: 22 15 0.36 23 10 0.24 24 9 0.21 25 8 0.19 ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34 Consensus pattern (22 bp): ATCACATTGGCCATTCTGCCTT Found at i:30054374 original size:47 final size:47 Alignment explanation
Indices: 30054308--30054634 Score: 494 Period size: 47 Copynumber: 7.0 Consensus size: 47 30054298 TTTCGCACTA * * * * * 30054308 GCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTG 1 GCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTG * 30054355 GCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTG 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG * * 30054402 GCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATCG 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG * 30054449 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG 30054496 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG * * 30054543 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTT 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG * * ** * 30054590 GCCATTCGGCCTTATCTCATATATACACATTCACATTCAGCACAT 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT 30054635 AAAATCCTAA Statistics Matches: 260, Mismatches: 19, Indels: 2 0.93 0.07 0.01 Matches are distributed among these distances: 46 1 0.00 47 259 1.00 ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34 Consensus pattern (47 bp): GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG Found at i:30058521 original size:40 final size:40 Alignment explanation
Indices: 30058462--30058715 Score: 424 Period size: 40 Copynumber: 6.4 Consensus size: 40 30058452 CCTTCGAGGT 30058462 TTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGAAC 1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC * 30058501 TTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAAC 1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC * 30058541 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC 1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC * 30058581 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGG-AC 1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGAAC 30058621 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GAGAC 1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA-AC * * 30058661 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGGAC 1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC 30058701 TTAGCCCGGATATAT 1 TTAGCCCGGATATAT 30058716 ATAACTCTCA Statistics Matches: 202, Mismatches: 8, Indels: 9 0.92 0.04 0.04 Matches are distributed among these distances: 38 1 0.00 39 7 0.03 40 191 0.95 41 3 0.01 ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26 Consensus pattern (40 bp): TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC Found at i:30060250 original size:46 final size:46 Alignment explanation
Indices: 30060197--30060379 Score: 276 Period size: 46 Copynumber: 4.0 Consensus size: 46 30060187 TATATATACA * * ** 30060197 CATCTCATACATATCTCACATTAGCCATTTAGCTTTACCACATATC 1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC * * 30060243 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCACATATC 1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC * ** 30060289 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTTATATC 1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC * 30060335 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT 1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT 30060380 ATACACTTCC Statistics Matches: 124, Mismatches: 13, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 46 124 1.00 ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34 Consensus pattern (46 bp): CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC Found at i:30060424 original size:47 final size:47 Alignment explanation
Indices: 30060353--30060590 Score: 334 Period size: 47 Copynumber: 5.1 Consensus size: 47 30060343 ACACATTTCG * * * * * * 30060353 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA * 30060400 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA * 30060447 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA * 30060494 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA * * * ** 30060541 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA 30060588 CAT 1 CAT 30060591 AAAATCCTAA Statistics Matches: 175, Mismatches: 15, Indels: 2 0.91 0.08 0.01 Matches are distributed among these distances: 46 1 0.01 47 174 0.99 ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34 Consensus pattern (47 bp): CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA Found at i:30072687 original size:25 final size:25 Alignment explanation
Indices: 30072659--30072734 Score: 68 Period size: 25 Copynumber: 3.2 Consensus size: 25 30072649 CTAATGGCCG 30072659 ATGTGATGAATGTGAAAGTGTATAT 1 ATGTGATGAATGTGAAAGTGTATAT * *** *** 30072684 ATGTGAT-AAAGCCTAA-TGGCCA- 1 ATGTGATGAATGTGAAAGTGTATAT 30072706 ATGTGATGAATGTGAAAGTGTATAT 1 ATGTGATGAATGTGAAAGTGTATAT 30072731 ATGT 1 ATGT 30072735 AACAAGGCCT Statistics Matches: 34, Mismatches: 14, Indels: 6 0.63 0.26 0.11 Matches are distributed among these distances: 22 7 0.21 23 8 0.24 24 8 0.24 25 11 0.32 ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33 Consensus pattern (25 bp): ATGTGATGAATGTGAAAGTGTATAT Found at i:30073025 original size:47 final size:47 Alignment explanation
Indices: 30072446--30073025 Score: 910 Period size: 47 Copynumber: 12.3 Consensus size: 47 30072436 ACAAGATATG * 30072446 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 30072493 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA * 30072540 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 30072587 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * * 30072634 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * 30072681 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * * 30072728 TATATGTAACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 30072775 TATATGTGATAAAGCCTAATGACCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 30072822 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * 30072869 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * * * 30072916 TATATGAGATAAGACCTAATGGCCGATGTGATGGAGGATGTGAAGGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGAT-GA--ATGTGAAAGTGTA * * 30072966 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA 1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * 30073013 TAAATGTGATAAG 1 TATATGTGATAAG 30073026 TCCCGAAGGG Statistics Matches: 486, Mismatches: 42, Indels: 10 0.90 0.08 0.02 Matches are distributed among these distances: 46 2 0.00 47 439 0.90 48 4 0.01 49 1 0.00 50 40 0.08 ACGTcount: A:0.35, C:0.08, G:0.28, T:0.28 Consensus pattern (47 bp): TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA Found at i:30076429 original size:13 final size:12 Alignment explanation
Indices: 30076405--30076450 Score: 56 Period size: 13 Copynumber: 3.7 Consensus size: 12 30076395 TGTAAATAAG * 30076405 AAAAATATCTTT 1 AAAAATTTCTTT 30076417 AAAAATTTCCTTT 1 AAAAATTT-CTTT * 30076430 AATAATTTCTTT 1 AAAAATTTCTTT 30076442 AGAAAATTT 1 A-AAAATTT 30076451 TCTCTTTACA Statistics Matches: 29, Mismatches: 3, Indels: 3 0.83 0.09 0.09 Matches are distributed among these distances: 12 12 0.41 13 17 0.59 ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46 Consensus pattern (12 bp): AAAAATTTCTTT Found at i:30078786 original size:14 final size:14 Alignment explanation
Indices: 30078767--30078795 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 30078757 TAAGTTACTT 30078767 AATCTTTGATGCAA 1 AATCTTTGATGCAA 30078781 AATCTTTGATGCAA 1 AATCTTTGATGCAA 30078795 A 1 A 30078796 CATATTTGAA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34 Consensus pattern (14 bp): AATCTTTGATGCAA Found at i:30082009 original size:57 final size:56 Alignment explanation
Indices: 30081875--30082010 Score: 139 Period size: 57 Copynumber: 2.4 Consensus size: 56 30081865 TATACAATAA * * * * * 30081875 GATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTAAGGAGCTTGATCTG 1 GATTACCAGTCCAGGCTAAAT-CTATCTATAACATATGCTCGAAGGAGCTTGATCAG * * * * * 30081932 GATTACCCGTCCGGGATAAATCTAATCTATAACATATGCTCGGAGGA-CTTATATCAG 1 GATTACCAGTCCAGGCTAAATCT-ATCTATAACATATGCTCGAAGGAGCTT-GATCAG * 30081989 GATTACCAATCCAGGCTAAATC 1 GATTACCAGTCCAGGCTAAATC 30082011 CTTTTTGTAA Statistics Matches: 63, Mismatches: 14, Indels: 4 0.78 0.17 0.05 Matches are distributed among these distances: 56 5 0.08 57 58 0.92 ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29 Consensus pattern (56 bp): GATTACCAGTCCAGGCTAAATCTATCTATAACATATGCTCGAAGGAGCTTGATCAG Found at i:30086377 original size:68 final size:71 Alignment explanation
Indices: 30086249--30086384 Score: 190 Period size: 68 Copynumber: 1.9 Consensus size: 71 30086239 ATTAAACTTG 30086249 ATCACTTTAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATAT 1 ATCACTTTAATATTAAATTAATAGAATA-TTATCTACAAGATAAACATTAAATTAAATTTAATAT 30086314 TAAGATA 65 TAAGATA * * ** 30086321 ATCACTTTAATATTGAATTAATA-AA-A-TACTCT-TAAGATAAGTATTAAATTAAATTTAATAT 1 ATCACTTTAATATTAAATTAATAGAATATTA-TCTACAAGATAAACATTAAATTAAATTTAATAT 30086382 TAA 65 TAA 30086385 ATTTATTAAA Statistics Matches: 59, Mismatches: 4, Indels: 6 0.86 0.06 0.09 Matches are distributed among these distances: 68 31 0.53 69 3 0.05 70 1 0.02 71 2 0.03 72 22 0.37 ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40 Consensus pattern (71 bp): ATCACTTTAATATTAAATTAATAGAATATTATCTACAAGATAAACATTAAATTAAATTTAATATT AAGATA Found at i:30090192 original size:30 final size:30 Alignment explanation
Indices: 30090135--30090192 Score: 73 Period size: 30 Copynumber: 1.9 Consensus size: 30 30090125 TAGGCACTTC * 30090135 CACACGGGTGATTCACACGCCCCTGTGTGA 1 CACACGGGTGATCCACACGCCCCTGTGTGA * * 30090165 CACACGGGTAGA-CCACATGCCCGTGTGT 1 CACACGGGT-GATCCACACGCCCCTGTGT 30090193 CATGGTCATG Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 30 22 0.92 31 2 0.08 ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19 Consensus pattern (30 bp): CACACGGGTGATCCACACGCCCCTGTGTGA Found at i:30095555 original size:48 final size:49 Alignment explanation
Indices: 30095436--30095621 Score: 216 Period size: 48 Copynumber: 3.8 Consensus size: 49 30095426 AAGATGTTGG * * * * * 30095436 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGCTGA 1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCT-ACATATCAATGCCGA * * * 30095486 TGCCATGTTCCAAACATGGTCTTACACTAGC-CTACATGTCAAGGCCGA 1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA * * * * 30095534 TACCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATAAATGTCGA 1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA * * 30095582 TGCCATGTTCCAAACATGGTCTTACACTGGCTC-ACATATC 1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATC 30095622 CCTAGTATCA Statistics Matches: 114, Mismatches: 20, Indels: 6 0.81 0.14 0.04 Matches are distributed among these distances: 48 82 0.72 49 4 0.04 50 28 0.25 ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28 Consensus pattern (49 bp): TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA Found at i:30098431 original size:31 final size:31 Alignment explanation
Indices: 30098203--30098430 Score: 368 Period size: 31 Copynumber: 7.4 Consensus size: 31 30098193 ACGGTTACTA * * * 30098203 GGCCGAAGCTTTTTCATAAATCATATCACTA 1 GGCCGAAGCCTTATCATAAATCATATCACTG 30098234 GGCCGAA-CCTTATCATAAATCATATCACTG 1 GGCCGAAGCCTTATCATAAATCATATCACTG * 30098264 GGCCGAAGCCTTATCATAATTCATATCACTG 1 GGCCGAAGCCTTATCATAAATCATATCACTG 30098295 GGCCGAAGCCTTATCATAAATCATATCACTG 1 GGCCGAAGCCTTATCATAAATCATATCACTG * 30098326 GGCCGAAGCCTTATCATAAATCATATCTCTG 1 GGCCGAAGCCTTATCATAAATCATATCACTG * 30098357 GGCCGAAGCCTTTTCATAAATCATATCACTG 1 GGCCGAAGCCTTATCATAAATCATATCACTG * * * 30098388 GGCCGAATCCTTTTCATAAATCATATCATTG 1 GGCCGAAGCCTTATCATAAATCATATCACTG 30098419 GGCCGAAGCCTT 1 GGCCGAAGCCTT 30098431 TACTGTAAAC Statistics Matches: 185, Mismatches: 11, Indels: 2 0.93 0.06 0.01 Matches are distributed among these distances: 30 27 0.15 31 158 0.85 ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29 Consensus pattern (31 bp): GGCCGAAGCCTTATCATAAATCATATCACTG Found at i:30098664 original size:24 final size:24 Alignment explanation
Indices: 30098637--30098719 Score: 87 Period size: 25 Copynumber: 3.4 Consensus size: 24 30098627 CTGGAGGCCT 30098637 AGCCTCTTTTAAT-AACTGGGGCAA 1 AGCC-CTTTTAATAAACTGGGGCAA ** 30098661 AGCCCTTTTTGGTAAACTGGGGCAA 1 AGCCC-TTTTAATAAACTGGGGCAA ** * 30098686 AGCCCTTTTCGGTAAACTGGGGAAA 1 AGCCCTTTT-AATAAACTGGGGCAA 30098711 AGCCCTTTT 1 AGCCCTTTT 30098720 CGGTAAACTA Statistics Matches: 53, Mismatches: 3, Indels: 5 0.87 0.05 0.08 Matches are distributed among these distances: 23 1 0.02 24 13 0.25 25 39 0.74 ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29 Consensus pattern (24 bp): AGCCCTTTTAATAAACTGGGGCAA Found at i:30098678 original size:25 final size:25 Alignment explanation
Indices: 30098650--30098743 Score: 145 Period size: 25 Copynumber: 3.8 Consensus size: 25 30098640 CTCTTTTAAT * 30098650 AACTGGGGCAAAGCCCTTTTTGGTA 1 AACTGGGGCAAAGCCCTTTTCGGTA 30098675 AACTGGGGCAAAGCCCTTTTCGGTA 1 AACTGGGGCAAAGCCCTTTTCGGTA * 30098700 AACTGGGGAAAAGCCCTTTTCGGTA 1 AACTGGGGCAAAGCCCTTTTCGGTA * * 30098725 AACTAGGGCATA-CCCTTTT 1 AACTGGGGCAAAGCCCTTTT 30098744 AGCACTTCCT Statistics Matches: 64, Mismatches: 5, Indels: 1 0.91 0.07 0.01 Matches are distributed among these distances: 24 7 0.11 25 57 0.89 ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27 Consensus pattern (25 bp): AACTGGGGCAAAGCCCTTTTCGGTA Found at i:30099614 original size:27 final size:27 Alignment explanation
Indices: 30099552--30099629 Score: 81 Period size: 27 Copynumber: 2.9 Consensus size: 27 30099542 GGGCATATTC 30099552 GTCATTTTACCATACAGGGGTATTACG 1 GTCATTTTACCATACAGGGGTATTACG * * 30099579 GTCACTTTACCCTACAGGGGCT-TTACG 1 GTCATTTTACCATACAGGGG-TATTACG * 30099606 GT-ATTTTTACC-TAATAGGGGTATT 1 GTCA-TTTTACCAT-ACAGGGGTATT 30099630 TTAGTCATTT Statistics Matches: 43, Mismatches: 4, Indels: 8 0.78 0.07 0.15 Matches are distributed among these distances: 26 3 0.07 27 39 0.91 28 1 0.02 ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36 Consensus pattern (27 bp): GTCATTTTACCATACAGGGGTATTACG Found at i:30099700 original size:27 final size:27 Alignment explanation
Indices: 30099647--30099943 Score: 215 Period size: 27 Copynumber: 11.0 Consensus size: 27 30099637 TTTCACCCTA * * * * 30099647 CAAGGGTGTTTTGGTAAATCTACAAAC 1 CAAGGGTATTTTGGTAATTTTATAAAC ** * 30099674 CAAGGGTATTTCAGTAATTTTGTAAAC 1 CAAGGGTATTTTGGTAATTTTATAAAC * * * * 30099701 CAATGGTATTTCT-ATAATTTTTAGAAAGT 1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C * * 30099730 CAAGGGTATTTCT-GTAATTTTGTAAAT 1 CAAGGGTATTT-TGGTAATTTTATAAAC * * * * 30099757 TAGGGGTATTTTGGTAATTTTACAAAT 1 CAAGGGTATTTTGGTAATTTTATAAAC ** * 30099784 TGAGGGTATTTTGGTAATTTTACAAAC 1 CAAGGGTATTTTGGTAATTTTATAAAC * * * 30099811 TAGGGGTATTTTGGTAATTTTACAAAC 1 CAAGGGTATTTTGGTAATTTTATAAAC * * * * * 30099838 CAGGGGTATTTTAGCAATTTTACAGAC 1 CAAGGGTATTTTGGTAATTTTATAAAC * * 30099865 CAA-GGTATTTTGGTAATTTTACT-GAT 1 CAAGGGTATTTTGGTAATTTTA-TAAAC * * 30099891 CGAGGGTATTTTGGTAATTTTGTAAAC 1 CAAGGGTATTTTGGTAATTTTATAAAC * * 30099918 CAAGGGTATTTTAGTAATTTTGTAAA 1 CAAGGGTATTTTGGTAATTTTATAAA 30099944 TCGAGGTAAA Statistics Matches: 222, Mismatches: 41, Indels: 14 0.80 0.15 0.05 Matches are distributed among these distances: 26 22 0.10 27 171 0.77 28 14 0.06 29 15 0.07 ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40 Consensus pattern (27 bp): CAAGGGTATTTTGGTAATTTTATAAAC Found at i:30099951 original size:80 final size:80 Alignment explanation
Indices: 30099647--30099938 Score: 257 Period size: 80 Copynumber: 3.6 Consensus size: 80 30099637 TTTCACCCTA * * * ** * ** * 30099647 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT 1 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT * * 30099712 CT-ATAATTTTTAGAAAGT 66 -TGGTAA-TTTTA-CAA-T ** * * *** 30099730 CAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT 1 CAAGGGTATTT-TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATT * 30099794 TTGGTAATTTTACAAA 65 TTGGTAATTTTACAAT * ** * * * 30099810 CTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACCAA-GGTATT 1 C-AAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATT * 30099874 TTGGTAATTTTACTGAT 65 TTGGTAATTTTAC-AAT * 30099891 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT 1 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT 30099939 GTAAATCGAG Statistics Matches: 166, Mismatches: 38, Indels: 13 0.76 0.18 0.06 Matches are distributed among these distances: 80 62 0.37 81 47 0.28 82 6 0.04 83 50 0.30 84 1 0.01 ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41 Consensus pattern (80 bp): CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT TGGTAATTTTACAAT Found at i:30099988 original size:27 final size:27 Alignment explanation
Indices: 30099930--30100059 Score: 172 Period size: 27 Copynumber: 4.9 Consensus size: 27 30099920 AGGGTATTTT * 30099930 AGTAATTTTGTAAATCGA-GGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAAC * * * 30099956 AATAATTCTGTAAATCAAGGGTAAAAT 1 AGTAATTCTGTAAATCGAGGGTAAAAC * * 30099983 AGTAATTCTATAAATCGATGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAAC * 30100010 GGTAATTCTGTAAATCGAGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAAC * * 30100037 AGTAATTATGTAAATCGGGGGTA 1 AGTAATTCTGTAAATCGAGGGTA 30100060 CTTTGGTAAT Statistics Matches: 88, Mismatches: 15, Indels: 1 0.85 0.14 0.01 Matches are distributed among these distances: 26 15 0.17 27 73 0.83 ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29 Consensus pattern (27 bp): AGTAATTCTGTAAATCGAGGGTAAAAC Found at i:30100031 original size:54 final size:53 Alignment explanation
Indices: 30099905--30100053 Score: 181 Period size: 54 Copynumber: 2.8 Consensus size: 53 30099895 GGTATTTTGG * * *** * 30099905 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGTAAAACAA 1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGTAAAACAA * * ** 30099958 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGATGGTAAAACGG 1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGA-GGTAAAACAA * * 30100012 TAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCG 1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCG 30100054 GGGGTACTTT Statistics Matches: 82, Mismatches: 13, Indels: 1 0.85 0.14 0.01 Matches are distributed among these distances: 53 36 0.44 54 46 0.56 ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32 Consensus pattern (53 bp): TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGTAAAACAA Found at i:30111260 original size:40 final size:40 Alignment explanation
Indices: 30111198--30111415 Score: 300 Period size: 40 Copynumber: 5.5 Consensus size: 40 30111188 AAACCAAGTA * * * 30111198 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG 1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG ** 30111237 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * 30111277 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * 30111317 CCTTCAGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG * * 30111357 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG 30111397 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 30111416 TTATCATCCG Statistics Matches: 163, Mismatches: 13, Indels: 5 0.90 0.07 0.03 Matches are distributed among these distances: 39 14 0.09 40 149 0.91 ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG Found at i:30116297 original size:24 final size:25 Alignment explanation
Indices: 30116241--30116311 Score: 90 Period size: 24 Copynumber: 2.8 Consensus size: 25 30116231 GAGTCATGAT * * 30116241 CGGTAAGCTCCTCTTGAGCTGATAAA 1 CGGTAAGCT-CTATTGAGCTGAGAAA ** 30116267 CAATAAGCTCTATTGAGCTG-GAAA 1 CGGTAAGCTCTATTGAGCTGAGAAA 30116291 CGGTAAGCTCTATTGAGCTGA 1 CGGTAAGCTCTATTGAGCTGA 30116312 ATAATAAGCT Statistics Matches: 38, Mismatches: 6, Indels: 3 0.81 0.13 0.06 Matches are distributed among these distances: 24 21 0.55 25 10 0.26 26 7 0.18 ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27 Consensus pattern (25 bp): CGGTAAGCTCTATTGAGCTGAGAAA Found at i:30116322 original size:22 final size:22 Alignment explanation
Indices: 30116268--30116323 Score: 69 Period size: 24 Copynumber: 2.5 Consensus size: 22 30116258 GCTGATAAAC 30116268 AATAAGCTCTATTGAGCTGGAA 1 AATAAGCTCTATTGAGCTGGAA * 30116290 ACGGTAAGCTCTATTGAGCT-GAA 1 A--ATAAGCTCTATTGAGCTGGAA 30116313 TAATAAGCTCT 1 -AATAAGCTCT 30116324 TTCCAGCTGA Statistics Matches: 29, Mismatches: 2, Indels: 6 0.78 0.05 0.16 Matches are distributed among these distances: 22 9 0.31 23 3 0.10 24 17 0.59 ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29 Consensus pattern (22 bp): AATAAGCTCTATTGAGCTGGAA Found at i:30116346 original size:23 final size:23 Alignment explanation
Indices: 30116270--30116346 Score: 77 Period size: 22 Copynumber: 3.3 Consensus size: 23 30116260 TGATAAACAA * * 30116270 TAAGCTCTATTGAGCTGGAAACGG 1 TAAGCTCTATTCAGCT-GAATCGG * ** 30116294 TAAGCTCTATTGAGCTGAAT-AA 1 TAAGCTCTATTCAGCTGAATCGG 30116316 TAAGCTCT-TTCCAGCTGAATCGG 1 TAAGCTCTATT-CAGCTGAATCGG 30116339 TAAGCTCT 1 TAAGCTCT 30116347 GAAACAGTAA Statistics Matches: 45, Mismatches: 6, Indels: 5 0.80 0.11 0.09 Matches are distributed among these distances: 21 2 0.04 22 16 0.36 23 11 0.24 24 16 0.36 ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30 Consensus pattern (23 bp): TAAGCTCTATTCAGCTGAATCGG Found at i:30119590 original size:20 final size:22 Alignment explanation
Indices: 30119549--30119590 Score: 61 Period size: 21 Copynumber: 2.0 Consensus size: 22 30119539 CTATTAATAG * 30119549 TGCTTTCAACTATTCGAAACTT 1 TGCTTTCAACCATTCGAAACTT 30119571 TGCTTT-AACCATTC-AAACTT 1 TGCTTTCAACCATTCGAAACTT 30119591 CACATCTTTT Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 20 6 0.32 21 7 0.37 22 6 0.32 ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40 Consensus pattern (22 bp): TGCTTTCAACCATTCGAAACTT Found at i:30121677 original size:19 final size:20 Alignment explanation
Indices: 30121653--30121690 Score: 53 Period size: 19 Copynumber: 1.9 Consensus size: 20 30121643 GGTACCACCA 30121653 AAACAT-ATATCA-CATCTTT 1 AAACATCAT-TCATCATCTTT 30121672 AAACATCATTCATCATCTT 1 AAACATCATTCATCATCTT 30121691 ACCACCTTAT Statistics Matches: 17, Mismatches: 0, Indels: 3 0.85 0.00 0.15 Matches are distributed among these distances: 19 9 0.53 20 8 0.47 ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37 Consensus pattern (20 bp): AAACATCATTCATCATCTTT Found at i:30121986 original size:46 final size:45 Alignment explanation
Indices: 30121919--30122086 Score: 180 Period size: 46 Copynumber: 3.6 Consensus size: 45 30121909 CGCCCCTAAG * 30121919 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA 1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATT-GCATCCATAAA * * 30121965 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA 1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTGCATCCATAAA * * * * 30122012 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG 1 TGAACTCGGACTCAACTCAACGAGTTCGGGCA-TTGCATCCATAAA * 30122058 TGAACTCAGACTCAACTCAACGAGTTCGG 1 TGAACTCGGACTCAACTCAACGAGTTCGG 30122087 ATGCTCAACC Statistics Matches: 101, Mismatches: 13, Indels: 16 0.78 0.10 0.12 Matches are distributed among these distances: 43 6 0.06 44 2 0.02 45 1 0.01 46 54 0.53 47 28 0.28 48 2 0.02 49 2 0.02 50 4 0.04 51 2 0.02 ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22 Consensus pattern (45 bp): TGAACTCGGACTCAACTCAACGAGTTCGGGCATTGCATCCATAAA Found at i:30122030 original size:93 final size:93 Alignment explanation
Indices: 30121920--30122090 Score: 288 Period size: 93 Copynumber: 1.8 Consensus size: 93 30121910 GCCCCTAAGT * * * 30121920 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA 30121985 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * * * 30122013 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA 30122078 CGAGTTCGGATGC 66 CGAGTTCGGATGC 30122091 TCAACCATCC Statistics Matches: 72, Mismatches: 6, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 93 72 1.00 ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:30126729 original size:22 final size:23 Alignment explanation
Indices: 30126701--30126752 Score: 63 Period size: 22 Copynumber: 2.3 Consensus size: 23 30126691 TTAGAAATGA 30126701 TAAGCTCAATT-GAGATGAA-CAG 1 TAAGCTC-ATTCGAGATGAATCAG * * 30126723 TAAGCTCTTTCGAGCTGAATCAG 1 TAAGCTCATTCGAGATGAATCAG 30126746 TAAGCTC 1 TAAGCTC 30126753 CAATAAGCTG Statistics Matches: 26, Mismatches: 2, Indels: 3 0.84 0.06 0.10 Matches are distributed among these distances: 21 2 0.08 22 14 0.54 23 10 0.38 ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27 Consensus pattern (23 bp): TAAGCTCATTCGAGATGAATCAG Found at i:30126761 original size:23 final size:23 Alignment explanation
Indices: 30126735--30126785 Score: 66 Period size: 23 Copynumber: 2.2 Consensus size: 23 30126725 AGCTCTTTCG * * 30126735 AGCTGAATCAGTAAGCTCCAATA 1 AGCTGAAACAATAAGCTCCAATA ** 30126758 AGCTGAAACAATAAGCTCTTATA 1 AGCTGAAACAATAAGCTCCAATA 30126781 AGCTG 1 AGCTG 30126786 TGGTGAGTCC Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 23 24 1.00 ACGTcount: A:0.39, C:0.20, G:0.18, T:0.24 Consensus pattern (23 bp): AGCTGAAACAATAAGCTCCAATA Found at i:30132046 original size:58 final size:58 Alignment explanation
Indices: 30131977--30132094 Score: 227 Period size: 58 Copynumber: 2.0 Consensus size: 58 30131967 ATCACCATCA * 30131977 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATTCATGATACAATTAAC 1 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC 30132035 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC 1 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC 30132093 AT 1 AT 30132095 CTTATAAGCA Statistics Matches: 59, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 58 59 1.00 ACGTcount: A:0.48, C:0.23, G:0.02, T:0.27 Consensus pattern (58 bp): ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC Found at i:30134082 original size:9 final size:9 Alignment explanation
Indices: 30134068--30134109 Score: 50 Period size: 9 Copynumber: 4.6 Consensus size: 9 30134058 ATAATTTTTG 30134068 ATAAAAATT 1 ATAAAAATT 30134077 ATAAAAATGAT 1 ATAAAAAT--T * 30134088 TTAAAAA-T 1 ATAAAAATT 30134096 ATAAAAATT 1 ATAAAAATT 30134105 ATAAA 1 ATAAA 30134110 TAAAAAGAAA Statistics Matches: 28, Mismatches: 2, Indels: 6 0.78 0.06 0.17 Matches are distributed among these distances: 8 7 0.25 9 14 0.50 11 7 0.25 ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31 Consensus pattern (9 bp): ATAAAAATT Found at i:30140878 original size:16 final size:17 Alignment explanation
Indices: 30140847--30140879 Score: 50 Period size: 18 Copynumber: 1.9 Consensus size: 17 30140837 AGGGTTTAAT 30140847 TGTACAAAAATTAGATTG 1 TGTACAAAAA-TAGATTG 30140865 TGTACAAAAA-AGATT 1 TGTACAAAAATAGATT 30140880 CAGAAGAACT Statistics Matches: 15, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 16 5 0.33 18 10 0.67 ACGTcount: A:0.48, C:0.06, G:0.15, T:0.30 Consensus pattern (17 bp): TGTACAAAAATAGATTG Found at i:30142834 original size:93 final size:93 Alignment explanation
Indices: 30142726--30142896 Score: 315 Period size: 93 Copynumber: 1.8 Consensus size: 93 30142716 GCCCCTAAGT * * 30142726 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 30142791 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 30142819 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 30142884 CGAGTTCGGATGC 66 CGAGTTCGGATGC 30142897 TCAACCATCC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:30142893 original size:46 final size:46 Alignment explanation
Indices: 30142721--30142893 Score: 219 Period size: 46 Copynumber: 3.7 Consensus size: 46 30142711 AACCCGCCCC * * * 30142721 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA * 30142767 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C- 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA * * 30142815 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 30142860 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 30142894 TGCTCAACCA Statistics Matches: 109, Mismatches: 9, Indels: 18 0.80 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 44 2 0.02 45 2 0.02 46 60 0.55 47 29 0.27 48 2 0.02 49 2 0.02 50 4 0.04 51 2 0.02 ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22 Consensus pattern (46 bp): TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA Found at i:30150402 original size:93 final size:93 Alignment explanation
Indices: 30150295--30150465 Score: 315 Period size: 93 Copynumber: 1.8 Consensus size: 93 30150285 GCCCCTAAGT * * 30150295 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 30150360 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 30150388 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 30150453 CGAGTTCGGATGC 66 CGAGTTCGGATGC 30150466 TCAACCATCC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:30150462 original size:46 final size:46 Alignment explanation
Indices: 30150290--30150462 Score: 219 Period size: 46 Copynumber: 3.7 Consensus size: 46 30150280 AACCCGCCCC * * * 30150290 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA * 30150336 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C- 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA * * 30150384 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 30150429 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 30150463 TGCTCAACCA Statistics Matches: 109, Mismatches: 9, Indels: 18 0.80 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 44 2 0.02 45 2 0.02 46 61 0.56 47 29 0.27 48 2 0.02 49 2 0.02 50 3 0.03 51 2 0.02 ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21 Consensus pattern (46 bp): TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA Found at i:30151026 original size:27 final size:27 Alignment explanation
Indices: 30150995--30151046 Score: 104 Period size: 27 Copynumber: 1.9 Consensus size: 27 30150985 CATGCTGATT 30150995 ACTTTTCCCTTCTATGGCAACATCATC 1 ACTTTTCCCTTCTATGGCAACATCATC 30151022 ACTTTTCCCTTCTATGGCAACATCA 1 ACTTTTCCCTTCTATGGCAACATCA 30151047 AATTCTCTCT Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 27 25 1.00 ACGTcount: A:0.23, C:0.33, G:0.08, T:0.37 Consensus pattern (27 bp): ACTTTTCCCTTCTATGGCAACATCATC Found at i:30151059 original size:24 final size:26 Alignment explanation
Indices: 30151000--30151053 Score: 74 Period size: 27 Copynumber: 2.1 Consensus size: 26 30150990 TGATTACTTT * * 30151000 TCCCTTCTATGGCAACATCATCACTTT 1 TCCCTTCTATGGCAACATCA-CAATTC 30151027 TCCCTTCTATGGCAACATCA-AATTC 1 TCCCTTCTATGGCAACATCACAATTC 30151052 TC 1 TC 30151054 TCTCTAACAT Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 25 5 0.20 27 20 0.80 ACGTcount: A:0.24, C:0.33, G:0.07, T:0.35 Consensus pattern (26 bp): TCCCTTCTATGGCAACATCACAATTC Found at i:30153905 original size:43 final size:42 Alignment explanation
Indices: 30153848--30153967 Score: 118 Period size: 43 Copynumber: 2.8 Consensus size: 42 30153838 AATGCCAACA * 30153848 TCCCAGAC-GTGGTCTTACATGTAATCACAGATCGATG-CCACTG 1 TCCCAGACAG-GGTCTTACATG-AATCACATATCGATGTCCA-TG * * * 30153891 TCCCAGACAGGGTCTTACGTGAATTACATATACGATGTCGATG 1 TCCCAGACAGGGTCTTACATGAATCACATAT-CGATGTCCATG * * * 30153934 TCCTAGACATGGTCTTACACGCAATCACATATCG 1 TCCCAGACAGGGTCTTACATG-AATCACATATCG 30153968 TAAATCCTAT Statistics Matches: 64, Mismatches: 9, Indels: 8 0.79 0.11 0.10 Matches are distributed among these distances: 42 8 0.12 43 44 0.69 44 12 0.19 ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27 Consensus pattern (42 bp): TCCCAGACAGGGTCTTACATGAATCACATATCGATGTCCATG Found at i:30170984 original size:158 final size:159 Alignment explanation
Indices: 30170719--30171035 Score: 528 Period size: 158 Copynumber: 2.0 Consensus size: 159 30170709 TGATATGCTA * 30170719 TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCCCAACCCCAAAT 1 TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCACAACCCCAAAT * * * 30170784 TAGATTTAAATATTTTGAAACTTGACACTAAAAAAGTGTTTACAATATACCTATGATCTAGTTGT 66 TAGATTTAAATATTTTGAAACTTAACACTAAAAAAGTGTTTACAATATACCTATGATCCAATTGT * 30170849 GTTAGGTTGATTGCATGATCTTCTGTTGT 131 GTTAGGTTGATTGCATGATCCTCTGTTGT * * 30170878 TCCTTTTTTGGCTTCTAGTTCTTGTACTCGTACCAGACTGA-GAAAAAAATGCACAGCCCCAAAT 1 TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCACAACCCCAAAT * * * * 30170942 TAGATTTAAATATTTTGAAACTTAACAGTGAAAAAGTGTTTACGATATACCTGTGATCCAATTGT 66 TAGATTTAAATATTTTGAAACTTAACACTAAAAAAGTGTTTACAATATACCTATGATCCAATTGT 30171007 GTTAGGTTGATTGCATGATCCTCTGTTGT 131 GTTAGGTTGATTGCATGATCCTCTGTTGT 30171036 GACATTTACC Statistics Matches: 147, Mismatches: 11, Indels: 1 0.92 0.07 0.01 Matches are distributed among these distances: 158 107 0.73 159 40 0.27 ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37 Consensus pattern (159 bp): TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCACAACCCCAAAT TAGATTTAAATATTTTGAAACTTAACACTAAAAAAGTGTTTACAATATACCTATGATCCAATTGT GTTAGGTTGATTGCATGATCCTCTGTTGT Found at i:30174680 original size:9 final size:9 Alignment explanation
Indices: 30174664--30174706 Score: 56 Period size: 9 Copynumber: 5.1 Consensus size: 9 30174654 CATTTAAAAT 30174664 CCTCACCAC 1 CCTCACCAC * 30174673 CTTCACCAC 1 CCTCACCAC 30174682 CCTCA--A- 1 CCTCACCAC 30174688 CCTCACCAC 1 CCTCACCAC 30174697 CCTCACCAC 1 CCTCACCAC 30174706 C 1 C 30174707 TTTATTGCTA Statistics Matches: 29, Mismatches: 2, Indels: 6 0.78 0.05 0.16 Matches are distributed among these distances: 6 5 0.17 7 1 0.03 8 1 0.03 9 22 0.76 ACGTcount: A:0.23, C:0.63, G:0.00, T:0.14 Consensus pattern (9 bp): CCTCACCAC Found at i:30174782 original size:90 final size:90 Alignment explanation
Indices: 30174607--30174790 Score: 199 Period size: 90 Copynumber: 2.0 Consensus size: 90 30174597 CCGCATCAAA * * 30174607 CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCTCATTTAAACATTTAAAATCCTCACCA 1 CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCCCATTTAAACATTCAAAATCCTCACCA ** * 30174672 CCTTCACCACCCTCAACCTCACCAC 66 CCTTCACCACCAACAACCTCAACAC * * * * * * * 30174697 CCTCACCACCTTTATTGCTAGCAACCTTAACGCCCTCCCCATTTAAACCTTCAAAA-CTCTCACC 1 CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCCCATTTAAACATTCAAAATC-CTCACC * *** * 30174761 ACCTTTAGTGCCAACACCCTCAACAC 65 ACCTTCACCACCAACAACCTCAACAC 30174787 CCTC 1 CCTC 30174791 TCCATTTAAC Statistics Matches: 76, Mismatches: 17, Indels: 2 0.80 0.18 0.02 Matches are distributed among these distances: 89 1 0.01 90 75 0.99 ACGTcount: A:0.29, C:0.45, G:0.03, T:0.23 Consensus pattern (90 bp): CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCCCATTTAAACATTCAAAATCCTCACCA CCTTCACCACCAACAACCTCAACAC Found at i:30174790 original size:57 final size:56 Alignment explanation
Indices: 30174697--30174818 Score: 147 Period size: 57 Copynumber: 2.1 Consensus size: 56 30174687 ACCTCACCAC * * * * * 30174697 CCTCACCACCTTTATTGCTAGCAACCTTAACGCCCTCCCCATTTAAACC-TTCAAAA 1 CCTCACCACCTTTAGTGCCAACAACCTCAACACCCTCCCCATTT-AACCTTTCAAAA * * 30174753 CTCTCACCACCTTTAGTGCCAACACCCTCAACACCCTCTCCATTTAACCTTTCAAAA 1 C-CTCACCACCTTTAGTGCCAACAACCTCAACACCCTCCCCATTTAACCTTTCAAAA 30174810 CCTTCACCA 1 CC-TCACCA 30174819 TATTTACCAC Statistics Matches: 56, Mismatches: 7, Indels: 5 0.82 0.10 0.07 Matches are distributed among these distances: 56 6 0.11 57 50 0.89 ACGTcount: A:0.28, C:0.42, G:0.04, T:0.26 Consensus pattern (56 bp): CCTCACCACCTTTAGTGCCAACAACCTCAACACCCTCCCCATTTAACCTTTCAAAA Found at i:30175967 original size:14 final size:14 Alignment explanation
Indices: 30175944--30175999 Score: 60 Period size: 14 Copynumber: 3.9 Consensus size: 14 30175934 TTTCAAAAAT * 30175944 AAAAAACCCTAAAC 1 AAAAATCCCTAAAC 30175958 AAAAATCCCTAATATC 1 AAAAATCCCTAA-A-C * 30175974 AAAAA-CCCTAACC 1 AAAAATCCCTAAAC * 30175987 CAAAATCCCTAAA 1 AAAAATCCCTAAA 30176000 TTTGATAACC Statistics Matches: 35, Mismatches: 4, Indels: 6 0.78 0.09 0.13 Matches are distributed among these distances: 13 5 0.14 14 17 0.49 15 7 0.20 16 6 0.17 ACGTcount: A:0.55, C:0.30, G:0.00, T:0.14 Consensus pattern (14 bp): AAAAATCCCTAAAC Found at i:30181416 original size:17 final size:17 Alignment explanation
Indices: 30181394--30181443 Score: 55 Period size: 17 Copynumber: 2.8 Consensus size: 17 30181384 CATTGATATG * 30181394 CATATAAAATATATACA 1 CATATAAAATATACACA * 30181411 CATATAATATATACACA 1 CATATAAAATATACACA 30181428 CAATTATAATAATATA 1 C-A-TATAA-AATATA 30181444 AAAATAATAT Statistics Matches: 27, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 17 16 0.59 18 1 0.04 19 5 0.19 20 5 0.19 ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32 Consensus pattern (17 bp): CATATAAAATATACACA Found at i:30183772 original size:17 final size:17 Alignment explanation
Indices: 30183752--30183793 Score: 50 Period size: 17 Copynumber: 2.5 Consensus size: 17 30183742 AAATGTTAAT * 30183752 TAAAAATATCAAAATAA 1 TAAAAAAATCAAAATAA * 30183769 TAAAAAAATTAAAAT-A 1 TAAAAAAATCAAAATAA * 30183785 TCAAAAAAT 1 TAAAAAAAT 30183794 AAATCATTAT Statistics Matches: 22, Mismatches: 3, Indels: 1 0.85 0.12 0.04 Matches are distributed among these distances: 16 9 0.41 17 13 0.59 ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24 Consensus pattern (17 bp): TAAAAAAATCAAAATAA Found at i:30183788 original size:25 final size:25 Alignment explanation
Indices: 30183749--30183796 Score: 80 Period size: 25 Copynumber: 1.9 Consensus size: 25 30183739 ATTAAATGTT 30183749 AATTAAAAATATCAAAATAATAAAAA 1 AATTAAAAATATCAAAA-AATAAAAA 30183775 AATT-AAAATATCAAAAAATAAA 1 AATTAAAAATATCAAAAAATAAA 30183797 TCATTATACT Statistics Matches: 22, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 24 6 0.27 25 12 0.55 26 4 0.18 ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23 Consensus pattern (25 bp): AATTAAAAATATCAAAAAATAAAAA Found at i:30184506 original size:26 final size:26 Alignment explanation
Indices: 30184472--30184525 Score: 99 Period size: 26 Copynumber: 2.1 Consensus size: 26 30184462 TTTTTTGTTA 30184472 AATTTTAAATTTAACCTCTATGCTTT 1 AATTTTAAATTTAACCTCTATGCTTT * 30184498 AATTTTAAATTTAACCTCTATGTTTT 1 AATTTTAAATTTAACCTCTATGCTTT 30184524 AA 1 AA 30184526 CCTCTATGAC Statistics Matches: 27, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 26 27 1.00 ACGTcount: A:0.33, C:0.13, G:0.04, T:0.50 Consensus pattern (26 bp): AATTTTAAATTTAACCTCTATGCTTT Found at i:30184526 original size:14 final size:14 Alignment explanation
Indices: 30184507--30184533 Score: 54 Period size: 14 Copynumber: 1.9 Consensus size: 14 30184497 TAATTTTAAA 30184507 TTTAACCTCTATGT 1 TTTAACCTCTATGT 30184521 TTTAACCTCTATG 1 TTTAACCTCTATG 30184534 ACTAATTTAG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48 Consensus pattern (14 bp): TTTAACCTCTATGT Found at i:30185544 original size:29 final size:30 Alignment explanation
Indices: 30185507--30185569 Score: 83 Period size: 29 Copynumber: 2.1 Consensus size: 30 30185497 GGATTAGATT * * * 30185507 AAATTAATCCCTCTATTATT-AAATGAATC 1 AAATTAATCCATCTACTATTAAAAAGAATC * 30185536 AAATTAATCCATGTACTATTAAAAAGAATC 1 AAATTAATCCATCTACTATTAAAAAGAATC 30185566 AAAT 1 AAAT 30185570 AAGATCAAAT Statistics Matches: 29, Mismatches: 4, Indels: 1 0.85 0.12 0.03 Matches are distributed among these distances: 29 17 0.59 30 12 0.41 ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33 Consensus pattern (30 bp): AAATTAATCCATCTACTATTAAAAAGAATC Found at i:30185726 original size:25 final size:25 Alignment explanation
Indices: 30185692--30185745 Score: 108 Period size: 25 Copynumber: 2.2 Consensus size: 25 30185682 AACTTTCAAA 30185692 ACATAACACTATTAAATAATAAATG 1 ACATAACACTATTAAATAATAAATG 30185717 ACATAACACTATTAAATAATAAATG 1 ACATAACACTATTAAATAATAAATG 30185742 ACAT 1 ACAT 30185746 TTTTTAAACT Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 25 29 1.00 ACGTcount: A:0.56, C:0.13, G:0.04, T:0.28 Consensus pattern (25 bp): ACATAACACTATTAAATAATAAATG Found at i:30195666 original size:60 final size:60 Alignment explanation
Indices: 30195597--30195715 Score: 220 Period size: 60 Copynumber: 2.0 Consensus size: 60 30195587 TATGTATGTG 30195597 TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGCT 1 TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGCT * * 30195657 TATGAAAGTGCATACTCTTATTTTTTATTAATTATATACAAGATTACTAAGCTTTATGC 1 TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGC 30195716 GTATTCCCTC Statistics Matches: 57, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 60 57 1.00 ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43 Consensus pattern (60 bp): TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGCT Found at i:30203295 original size:33 final size:34 Alignment explanation
Indices: 30203228--30203300 Score: 85 Period size: 33 Copynumber: 2.2 Consensus size: 34 30203218 CTAAGCCTAG * * * 30203228 ATCAGTAAAGGTCTGGGCCTGAGGCTTATTCAGT 1 ATCAGTAAAGGTCTGGGCCTGAGCCCTATACAGT * * 30203262 ATCAGTACA-GTCTGGGCCTTAGCCCTATACAGT 1 ATCAGTAAAGGTCTGGGCCTGAGCCCTATACAGT * 30203295 AGCAGT 1 ATCAGT 30203301 GTGGGCCTAA Statistics Matches: 33, Mismatches: 6, Indels: 1 0.82 0.15 0.03 Matches are distributed among these distances: 33 25 0.76 34 8 0.24 ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27 Consensus pattern (34 bp): ATCAGTAAAGGTCTGGGCCTGAGCCCTATACAGT Found at i:30203328 original size:28 final size:28 Alignment explanation
Indices: 30203269--30203328 Score: 66 Period size: 28 Copynumber: 2.1 Consensus size: 28 30203259 AGTATCAGTA * * * 30203269 CAGTCTGGGCCTTAGCCCTATACAGTAG 1 CAGTCTGGGCCTAAGCCCAATACAGCAG * * * 30203297 CAGTGTGGGCCTAAGCCCAATGCAGCAT 1 CAGTCTGGGCCTAAGCCCAATACAGCAG 30203325 CAGT 1 CAGT 30203329 ACAGTGTAAT Statistics Matches: 26, Mismatches: 6, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 28 26 1.00 ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22 Consensus pattern (28 bp): CAGTCTGGGCCTAAGCCCAATACAGCAG Found at i:30203719 original size:27 final size:27 Alignment explanation
Indices: 30203673--30203828 Score: 190 Period size: 27 Copynumber: 5.8 Consensus size: 27 30203663 TACGGAACAT * 30203673 AAGGGCATTTC-GTCATTTTACCCTAC 1 AAGGGCATTACGGTCATTTTACCCTAC 30203699 AAGGGCATTACGGTCATTTTACCCTAC 1 AAGGGCATTACGGTCATTTTACCCTAC * * * * 30203726 AGGGGCATTACGATCATTTTAACCTAT 1 AAGGGCATTACGGTCATTTTACCCTAC * * 30203753 AGGGGCATTACGGTCATTTTACCTTAC 1 AAGGGCATTACGGTCATTTTACCCTAC * 30203780 AGGGGCATTACGGTCATTTTACCCTA- 1 AAGGGCATTACGGTCATTTTACCCTAC * * * 30203806 TAGGGATATTATGGTCATTTTAC 1 AAGGG-CATTACGGTCATTTTAC 30203829 AAATCGGGGG Statistics Matches: 114, Mismatches: 14, Indels: 3 0.87 0.11 0.02 Matches are distributed among these distances: 26 13 0.11 27 101 0.89 ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34 Consensus pattern (27 bp): AAGGGCATTACGGTCATTTTACCCTAC Found at i:30203824 original size:81 final size:80 Alignment explanation
Indices: 30203675--30203827 Score: 225 Period size: 81 Copynumber: 1.9 Consensus size: 80 30203665 CGGAACATAA * * 30203675 GGGCATTTCGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGAT 1 GGGCATTACGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGAT 30203740 CATTTTAACCTATAG 66 CATTTTAACCTATAG * * * * * * 30203755 GGGCATTACGGTCATTTTACCTTACAGGGGCATTACGGTCATTTTACCCTATAGGGATATTATGG 1 GGGCATTAC-GTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGA 30203820 TCATTTTA 65 TCATTTTA 30203828 CAAATCGGGG Statistics Matches: 64, Mismatches: 8, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 80 8 0.12 81 56 0.88 ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35 Consensus pattern (80 bp): GGGCATTACGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGAT CATTTTAACCTATAG Found at i:30203842 original size:27 final size:27 Alignment explanation
Indices: 30203822--30203918 Score: 122 Period size: 27 Copynumber: 3.6 Consensus size: 27 30203812 TATTATGGTC ** * 30203822 ATTTTACAAATCGGGGGTATTTCAATA 1 ATTTTACAAATAAGGGGTATTTCAGTA * 30203849 ATTTTACAAATAAGGGGTATTTTAGTA 1 ATTTTACAAATAAGGGGTATTTCAGTA * * * 30203876 ATTTTACAAATTAGGGATATTTCGGTA 1 ATTTTACAAATAAGGGGTATTTCAGTA * 30203903 ATTTTACAAATGAGGG 1 ATTTTACAAATAAGGG 30203919 TCTTAACGAC Statistics Matches: 61, Mismatches: 9, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 27 61 1.00 ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38 Consensus pattern (27 bp): ATTTTACAAATAAGGGGTATTTCAGTA Found at i:30203853 original size:81 final size:81 Alignment explanation
Indices: 30203687--30203855 Score: 187 Period size: 81 Copynumber: 2.1 Consensus size: 81 30203677 GCATTTCGTC * ** 30203687 ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTAACCTA 1 ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGATCATTTTAACAAA ** * 30203752 TAGGGGCATTACGGTC 66 TAGGGGCATTACAATA * * * * * * 30203768 ATTTTACCTTACAGGGGCATTACGGTCATTTTACCCTATAGGGATATTATGGTCATTTT-ACAAA 1 ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGATCATTTTAACAAA * * * 30203832 TCGGGGGTATTTCAATA 66 T-AGGGGCATTACAATA 30203849 ATTTTAC 1 ATTTTAC 30203856 AAATAAGGGG Statistics Matches: 72, Mismatches: 15, Indels: 2 0.81 0.17 0.02 Matches are distributed among these distances: 80 4 0.06 81 68 0.94 ACGTcount: A:0.27, C:0.20, G:0.19, T:0.35 Consensus pattern (81 bp): ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGATCATTTTAACAAA TAGGGGCATTACAATA Found at i:30207967 original size:33 final size:33 Alignment explanation
Indices: 30207910--30207972 Score: 83 Period size: 33 Copynumber: 1.9 Consensus size: 33 30207900 ATCAGTAACG * * * 30207910 GTCTGGGCCTGAGCTCTATTCAGTATCAGTATA 1 GTCTGGGCCTGAGCCCTATACAGTAGCAGTATA 30207943 GTCTGGGCCAT-AGCCCTATACAGTAGCAGT 1 GTCTGGGCC-TGAGCCCTATACAGTAGCAGT 30207973 GCGGGCCTCA Statistics Matches: 26, Mismatches: 3, Indels: 2 0.84 0.10 0.06 Matches are distributed among these distances: 33 25 0.96 34 1 0.04 ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29 Consensus pattern (33 bp): GTCTGGGCCTGAGCCCTATACAGTAGCAGTATA Found at i:30208221 original size:27 final size:27 Alignment explanation
Indices: 30208163--30208236 Score: 80 Period size: 27 Copynumber: 2.7 Consensus size: 27 30208153 GAAACAGTAG * 30208163 ATGTGGCAAAGCCACCAGT-ATCAATA 1 ATGTGGCATAGCCACCAGTAATCAATA * 30208189 ATTGTGGCATAGCCACCAGTAAT-AGTGA 1 A-TGTGGCATAGCCACCAGTAATCAAT-A * * 30208217 ATGTGACATAGTCACCAGTA 1 ATGTGGCATAGCCACCAGTA 30208237 CAGAACTTCT Statistics Matches: 41, Mismatches: 4, Indels: 5 0.82 0.08 0.10 Matches are distributed among these distances: 26 1 0.02 27 36 0.88 28 4 0.10 ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23 Consensus pattern (27 bp): ATGTGGCATAGCCACCAGTAATCAATA Found at i:30208411 original size:27 final size:27 Alignment explanation
Indices: 30208365--30208519 Score: 188 Period size: 27 Copynumber: 5.8 Consensus size: 27 30208355 TACATAACAT * 30208365 AAGGGCATTTCG-TCATTTTACCCTAC 1 AAGGGCATTACGATCATTTTACCCTAC * 30208391 AAGGGCATTACGGTCATTTTACCCTAC 1 AAGGGCATTACGATCATTTTACCCTAC * 30208418 AAGGGCATTACGATCATTTTAACCTAC 1 AAGGGCATTACGATCATTTTACCCTAC * * * * 30208445 AGGGGCATTATGGTCTTTTTACCCTAC 1 AAGGGCATTACGATCATTTTACCCTAC ** * * 30208472 TGGGGCATTACGATTATTTTACCTTAC 1 AAGGGCATTACGATCATTTTACCCTAC * 30208499 -AGGGTATTACGATCATTTTAC 1 AAGGGCATTACGATCATTTTAC 30208520 AAACCGAGGG Statistics Matches: 111, Mismatches: 17, Indels: 2 0.85 0.13 0.02 Matches are distributed among these distances: 26 29 0.26 27 82 0.74 ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35 Consensus pattern (27 bp): AAGGGCATTACGATCATTTTACCCTAC Found at i:30208543 original size:27 final size:26 Alignment explanation
Indices: 30208513--30208608 Score: 102 Period size: 26 Copynumber: 3.7 Consensus size: 26 30208503 TATTACGATC * 30208513 ATTTTACAAACCGAGGGTATTTTAGTA 1 ATTTTACAAACCG-GGGTATTTTGGTA * * * 30208540 ATTTTGCAAATCGGGATATTTTGGTA 1 ATTTTACAAACCGGGGTATTTTGGTA * * * * 30208566 ATTTTGCAAATCTGGGTATTTGGGTA 1 ATTTTACAAACCGGGGTATTTTGGTA * 30208592 ATTTTACAAACTGGGGT 1 ATTTTACAAACCGGGGT 30208609 CTTAATGACC Statistics Matches: 58, Mismatches: 11, Indels: 1 0.83 0.16 0.01 Matches are distributed among these distances: 26 47 0.81 27 11 0.19 ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40 Consensus pattern (26 bp): ATTTTACAAACCGGGGTATTTTGGTA Found at i:30208566 original size:26 final size:26 Alignment explanation
Indices: 30208527--30208606 Score: 110 Period size: 26 Copynumber: 3.1 Consensus size: 26 30208517 TACAAACCGA * 30208527 GGGTATTTTAGTAATTTTGCAAATC- 1 GGGTATTTTGGTAATTTTGCAAATCT 30208552 GGGATATTTTGGTAATTTTGCAAATCT 1 GGG-TATTTTGGTAATTTTGCAAATCT * * 30208579 GGGTATTTGGGTAATTTTACAAA-CT 1 GGGTATTTTGGTAATTTTGCAAATCT 30208604 GGG 1 GGG 30208607 GTCTTAATGA Statistics Matches: 50, Mismatches: 3, Indels: 4 0.88 0.05 0.07 Matches are distributed among these distances: 25 8 0.16 26 39 0.78 27 3 0.06 ACGTcount: A:0.26, C:0.07, G:0.25, T:0.41 Consensus pattern (26 bp): GGGTATTTTGGTAATTTTGCAAATCT Found at i:30215360 original size:35 final size:35 Alignment explanation
Indices: 30215314--30215384 Score: 142 Period size: 35 Copynumber: 2.0 Consensus size: 35 30215304 ACCTTGAGAT 30215314 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA 1 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA 30215349 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA 1 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA 30215384 A 1 A 30215385 CCAGAGAAGG Statistics Matches: 36, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 35 36 1.00 ACGTcount: A:0.44, C:0.14, G:0.25, T:0.17 Consensus pattern (35 bp): AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA Found at i:30215948 original size:21 final size:21 Alignment explanation
Indices: 30215922--30215963 Score: 84 Period size: 21 Copynumber: 2.0 Consensus size: 21 30215912 GAACGATACA 30215922 AAGAATTATTACAGAAATGCC 1 AAGAATTATTACAGAAATGCC 30215943 AAGAATTATTACAGAAATGCC 1 AAGAATTATTACAGAAATGCC 30215964 TTCACCATGG Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 21 21 1.00 ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24 Consensus pattern (21 bp): AAGAATTATTACAGAAATGCC Found at i:30221281 original size:22 final size:24 Alignment explanation
Indices: 30221236--30221281 Score: 62 Period size: 22 Copynumber: 2.0 Consensus size: 24 30221226 TAATCTTTAA 30221236 TATATAATTATATCTATTATAATT 1 TATATAATTATATCTATTATAATT 30221260 TATAT-ATTA-ATCT-TTATCAATT 1 TATATAATTATATCTATTAT-AATT 30221282 AGCATAGAAT Statistics Matches: 21, Mismatches: 0, Indels: 4 0.84 0.00 0.16 Matches are distributed among these distances: 21 4 0.19 22 8 0.38 23 4 0.19 24 5 0.24 ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54 Consensus pattern (24 bp): TATATAATTATATCTATTATAATT Found at i:30225810 original size:47 final size:46 Alignment explanation
Indices: 30225660--30225918 Score: 208 Period size: 47 Copynumber: 5.5 Consensus size: 46 30225650 GACGATGCCG * * 30225660 TGTCCCAGACATGGTCTTACACTGGCTCTCATACATG-CGTGCTGATGCA 1 TGTCCCAGACAT-GTCTTACACTGGCTATCA-AC-TGTCG-GCCGATGCA * * * ** * 30225709 TGTCCCAGACATGTCTTTCACTAGC-A-CAACTCTTAGCCGATGCG 1 TGTCCCAGACATGTCTTACACTGGCTATCAACTGTCGGCCGATGCA * * 30225753 TGTCCTAGACATGTCTTACACTGGCTATC-ACTGTCGAGGCTGATGCA 1 TGTCCCAGACATGTCTTACACTGGCTATCAACTGTC--GGCCGATGCA ** * * * 30225800 TGTCCCAGACATGTCTTACTTTAGC-ACTCATCTCT-GTGCCGATGCCA 1 TGTCCCAGACATGTCTTACACTGGCTA-TCAACTGTCG-GCCGATG-CA * * * 30225847 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTC-GCCGAAGCA 1 TGTCCCAGACAT-GTCTTACACTGGCTATCA-ACTGTCGGCCGATGCA 30225894 TGTCCCAGACATGTCTTACACTGGC 1 TGTCCCAGACATGTCTTACACTGGC 30225919 ACACAACACA Statistics Matches: 166, Mismatches: 31, Indels: 29 0.73 0.14 0.13 Matches are distributed among these distances: 44 30 0.18 45 8 0.05 46 23 0.14 47 58 0.35 48 33 0.20 49 14 0.08 ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29 Consensus pattern (46 bp): TGTCCCAGACATGTCTTACACTGGCTATCAACTGTCGGCCGATGCA Found at i:30228103 original size:16 final size:16 Alignment explanation
Indices: 30228082--30228115 Score: 68 Period size: 16 Copynumber: 2.1 Consensus size: 16 30228072 GATGAACATT 30228082 CTTATGAATATTTATG 1 CTTATGAATATTTATG 30228098 CTTATGAATATTTATG 1 CTTATGAATATTTATG 30228114 CT 1 CT 30228116 ATCGAAATGG Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 18 1.00 ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50 Consensus pattern (16 bp): CTTATGAATATTTATG Found at i:30243496 original size:44 final size:44 Alignment explanation
Indices: 30243423--30243510 Score: 158 Period size: 44 Copynumber: 2.0 Consensus size: 44 30243413 TGCCACTGCC * 30243423 ACATAACTACTAAAGTATTGTTTTGCCTATGTGGCGTACAATCT 1 ACATAACTACTAAAGTATTATTTTGCCTATGTGGCGTACAATCT * 30243467 ACATAACTACTAAAGTATTATTTTTCCTATGTGGCGTACAATCT 1 ACATAACTACTAAAGTATTATTTTGCCTATGTGGCGTACAATCT 30243511 TTACTTATAA Statistics Matches: 42, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 44 42 1.00 ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38 Consensus pattern (44 bp): ACATAACTACTAAAGTATTATTTTGCCTATGTGGCGTACAATCT Found at i:30248363 original size:28 final size:28 Alignment explanation
Indices: 30248271--30248419 Score: 266 Period size: 28 Copynumber: 5.4 Consensus size: 28 30248261 ATATTAAGTC * * 30248271 CGCACACTCAGTGCTATATAATCAA-CT 1 CGCACACTTAGTGCTACATAATCAAGCT 30248298 CGCACACTTAGTGCTACATAATCAA-CT 1 CGCACACTTAGTGCTACATAATCAAGCT 30248325 CGCACACTTAGTGCTACATAATCAAGCT 1 CGCACACTTAGTGCTACATAATCAAGCT 30248353 CGCACACTTAGTGCTACATAATCAAGCT 1 CGCACACTTAGTGCTACATAATCAAGCT 30248381 CGCACACTTAGTGCTACATAATCAAGCT 1 CGCACACTTAGTGCTACATAATCAAGCT 30248409 CGCACACTTAG 1 CGCACACTTAG 30248420 AGCTGTACAA Statistics Matches: 119, Mismatches: 2, Indels: 1 0.98 0.02 0.01 Matches are distributed among these distances: 27 50 0.42 28 69 0.58 ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25 Consensus pattern (28 bp): CGCACACTTAGTGCTACATAATCAAGCT Found at i:30256507 original size:28 final size:28 Alignment explanation
Indices: 30256444--30256597 Score: 247 Period size: 28 Copynumber: 5.5 Consensus size: 28 30256434 ATATTAAGTC * * 30256444 CGCACACTCAGTGCTATATAATC-AACT 1 CGCACACTTAGTGCTACATAATCAAACT * 30256471 CGCACACTTAGTGCTATATAATCAAACT 1 CGCACACTTAGTGCTACATAATCAAACT * 30256499 CGCACACTTAGTGCTACATAATCAAGCT 1 CGCACACTTAGTGCTACATAATCAAACT * 30256527 CGCACACTTAGTGCTACATAATCAAGCT 1 CGCACACTTAGTGCTACATAATCAAACT * 30256555 CGCACACTTAGTGCTACATAATCAAGCT 1 CGCACACTTAGTGCTACATAATCAAACT 30256583 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 30256598 GTACAATTTA Statistics Matches: 123, Mismatches: 3, Indels: 1 0.97 0.02 0.01 Matches are distributed among these distances: 27 22 0.18 28 101 0.82 ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26 Consensus pattern (28 bp): CGCACACTTAGTGCTACATAATCAAACT Found at i:30260213 original size:48 final size:48 Alignment explanation
Indices: 30260142--30260473 Score: 380 Period size: 48 Copynumber: 6.9 Consensus size: 48 30260132 TGATACTAGG * 30260142 GATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT 1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT * * * * 30260190 GATATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATT 1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT * * * 30260238 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC 1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT * ** * * 30260286 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATTCCATCGACATT 1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT * * * * * * * 30260334 GATAGGAGAACTAGTCTAAGACCATGTCTAGGACATGGCATCGGCCTC 1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT * * * * 30260382 GACATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGAAC-T 1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CCTT * * 30260430 GATATATGAGAGCCT-GTGTAAGACCATGTCTGGGACATGGCATC 1 G--ATATGTGAG-CTAGTGTAAGACCATGTTTGGGACATGGCATC 30260474 AGCATCTTAC Statistics Matches: 234, Mismatches: 46, Indels: 6 0.82 0.16 0.02 Matches are distributed among these distances: 48 198 0.85 49 1 0.00 50 33 0.14 51 2 0.01 ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26 Consensus pattern (48 bp): GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT Found at i:30260306 original size:96 final size:96 Alignment explanation
Indices: 30260142--30260473 Score: 477 Period size: 96 Copynumber: 3.4 Consensus size: 96 30260132 TGATACTAGG * * * * * * 30260142 GATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGATATGTGAGCCAATGT 1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT 30260207 AAGACCATGTTTGGAACATGGCATCGGCATT 66 AAGACCATGTTTGGAACATGGCATCGGCATT 30260238 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT 1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT ** * 30260303 AAGACCATGTTTGGAACATTCCATCGACATT 66 AAGACCATGTTTGGAACATGGCATCGGCATT * * * * * * 30260334 GATAGGAGAACTAGTCTAAGACCATGTCTAGGACATGGCATCGGCCTCGACATGTGGGCTAGTGT 1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT * * 30260399 AAGACCATGTTTGGAACATGGCATCGGAACT 66 AAGACCATGTTTGGAACATGGCATCGGCATT 30260430 GATATATGAGAGCCT-GTGTAAGACCATGTCTGGGACATGGCATC 1 G--ATATGAGAG-CTAGTGTAAGACCATGTCTGGGACATGGCATC 30260474 AGCATCTTAC Statistics Matches: 209, Mismatches: 24, Indels: 4 0.88 0.10 0.02 Matches are distributed among these distances: 96 173 0.83 98 34 0.16 99 2 0.01 ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26 Consensus pattern (96 bp): GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT AAGACCATGTTTGGAACATGGCATCGGCATT Found at i:30274179 original size:48 final size:47 Alignment explanation
Indices: 30274032--30274398 Score: 337 Period size: 48 Copynumber: 7.7 Consensus size: 47 30274022 TGATACTAGG * * * * * 30274032 GATATGTGAGCCAATGTAAGACTATGTCTGGAACATGGCATCAGCCTC 1 GATATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCAGCCTC * * * * * 30274080 GATATGTGAGCCAG-CTAAGACCATGTTTGGAACATGGCATCAGCGTT 1 GATATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCAGCCTC * 30274127 GATATGAGAGCTAGTGTATAG-CCATGATTAGGACATGGCATC-GACCTC 1 GATATGAGAGCTAGTGTA-AGACCATG-TTTGGACATGGCATCAG-CCTC * * * * * 30274175 GATATGTGAGCCAATGTAAGACCATGTTTGGAGCATGGCATCAGCATT 1 GATATGAGAGCTAGTGTAAGACCATGTTTGGA-CATGGCATCAGCCTC * * * * * 30274223 GATATGAGAGCTAGTATAAGACCCTATTTGGGACATGGTATCGGCCTC 1 GATATGAGAGCTAGTGTAAGACCATGTTT-GGACATGGCATCAGCCTC * * * 30274271 GATAT-ATGAGCCAGTGTAAGACCATGTTTGGAGCATGGCATCAGCATT 1 GATATGA-GAGCTAGTGTAAGACCATGTTTGGA-CATGGCATCAGCCTC * * * * 30274319 GATAGGAGAGTTAGTGTAAGGCGATGTTTGGGACATGGCATCAGCCTC 1 GATATGAGAGCTAGTGTAAGACCATGTTT-GGACATGGCATCAGCCTC * * * 30274367 GACATGTGGGCTAGTGTAAGACCATGTTTGGA 1 GATATGAGAGCTAGTGTAAGACCATGTTTGGA 30274399 ATATGGAATC Statistics Matches: 257, Mismatches: 50, Indels: 25 0.77 0.15 0.08 Matches are distributed among these distances: 47 55 0.21 48 188 0.73 49 14 0.05 ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26 Consensus pattern (47 bp): GATATGAGAGCTAGTGTAAGACCATGTTTGGACATGGCATCAGCCTC Found at i:30274337 original size:144 final size:145 Alignment explanation
Indices: 30274046--30274463 Score: 343 Period size: 144 Copynumber: 2.9 Consensus size: 145 30274036 TGTGAGCCAA * * * * * * * * * 30274046 TGTAAGACTATGTCTGGAACATGGCATCAGCCTCGATATGTGAGCCAG-CTAAGACCATGTTTGG 1 TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTGG * ** * * 30274110 AACATGGCATC-AGCGTTGATAT-GAGAGCTAGTGTATAG-CCATGAT-TAGGACATGGCATC-G 66 AACATGGAATCGA-CACTGATATATAGAGCCAGTGTA-AGACCATG-TCTAGGACATGGCATCAG * * * * ** * 30274170 ACCTCGATATGTGAGCCAA 128 -CATTGATAGGAGAGTTAG * * * 30274189 TGTAAGACCATGTTT-GGAGCATGGCATCAGCATTGATATGAGAGCTAGTATAAGACCCTATTTG 1 TGTAAGACCATGTTTGGGA-CATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTG * * * * 30274253 GGACATGGTATCGGC-CTCGATATAT-GAGCCAGTGTAAGACCATGT-TTGGAGCATGGCATCAG 65 GAACATGGAATCGACACT-GATATATAGAGCCAGTGTAAGACCATGTCTAGGA-CATGGCATCAG 30274315 CATTGATAGGAGAGTTAG 128 CATTGATAGGAGAGTTAG * * * * * * * 30274333 TGTAAGGCGATGTTTGGGACATGGCATCAGCCTCGACATGTGGGCTAGTGTAAGACCATGTTTGG 1 TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTGG * * * * 30274398 AATATGGAATCGACACTGATATATGAGAGCCAGTGTGAGACTATGTCTAGGACATGGCATCGGCA 66 AACATGGAATCGACACTGATATAT-AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCA 30274463 T 130 T 30274464 CTTACCCTTT Statistics Matches: 220, Mismatches: 42, Indels: 23 0.77 0.15 0.08 Matches are distributed among these distances: 142 2 0.01 143 46 0.21 144 131 0.60 145 6 0.03 146 31 0.14 147 4 0.02 ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26 Consensus pattern (145 bp): TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTGG AACATGGAATCGACACTGATATATAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCAT TGATAGGAGAGTTAG Found at i:30274418 original size:96 final size:96 Alignment explanation
Indices: 30274032--30274458 Score: 475 Period size: 96 Copynumber: 4.4 Consensus size: 96 30274022 TGATACTAGG * * * * * * * 30274032 GATATGTGAGCCAATGTAAGACTATGTCTGGAACATGGCATCAGCCTCGATATGTGAGCCAG-CT 1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT * 30274096 AAGACCATGTTTGGAACATGGCATCAGCGTT 66 AAGACCATGTTTGGAACATGGCATCAGCATT * * * 30274127 GATATGAGAGCTAGTGTATAG-CCATGATTAGGACATGGCATC-GACCTCGATATGTGAGCCAAT 1 GATATGAGAGCTAGTGTA-AGACCATGTTTGGGACATGGCATCAG-CCTCGATATGTGAGCCAGT * 30274190 GTAAGACCATGTTTGGAGCATGGCATCAGCATT 64 GTAAGACCATGTTTGGAACATGGCATCAGCATT * * * * * * 30274223 GATATGAGAGCTAGTATAAGACCCTATTTGGGACATGGTATCGGCCTCGATATATGAGCCAGTGT 1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT * 30274288 AAGACCATGTTTGGAGCATGGCATCAGCATT 66 AAGACCATGTTTGGAACATGGCATCAGCATT * * * * * * * 30274319 GATAGGAGAGTTAGTGTAAGGCGATGTTTGGGACATGGCATCAGCCTCGACATGTGGGCTAGTGT 1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT * * * 30274384 AAGACCATGTTTGGAATATGGAATC-GACACT 66 AAGACCATGTTTGGAACATGGCATCAG-CATT * * * * * 30274415 GATATATGAGAGCCAGTGTGAGACTATGTCTAGGACATGGCATC 1 G--ATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC 30274459 GGCATCTTAC Statistics Matches: 279, Mismatches: 45, Indels: 13 0.83 0.13 0.04 Matches are distributed among these distances: 94 1 0.00 95 51 0.18 96 193 0.69 97 1 0.00 98 33 0.12 ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26 Consensus pattern (96 bp): GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT AAGACCATGTTTGGAACATGGCATCAGCATT Found at i:30276576 original size:36 final size:36 Alignment explanation
Indices: 30276525--30276596 Score: 135 Period size: 36 Copynumber: 2.0 Consensus size: 36 30276515 ACTCAAAGGA * 30276525 TAGATCATTTGAAGATGTTTGAAAATTATCAACCTC 1 TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC 30276561 TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC 1 TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC 30276597 CAAAATCCAA Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 36 35 1.00 ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36 Consensus pattern (36 bp): TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC Found at i:30277835 original size:42 final size:41 Alignment explanation
Indices: 30277754--30277870 Score: 117 Period size: 42 Copynumber: 2.8 Consensus size: 41 30277744 CCTAAAACAT * * ** * * 30277754 GAGCTTAAACTATTCAGCCTAAATGATGATGCTTCTAAGCAC 1 GAGCTTAAACTATTCATCCAAAAAAATAAT-ATTCTAAGCAC * 30277796 GAGCTTAAACTATTCATCCAAAAAAATAATATTCTTAAGCAT 1 GAGCTTAAACTATTCATCCAAAAAAATAATATTC-TAAGCAC *** 30277838 GAGCTTAAACTGCACATCCAAAAAAATATATAT 1 GAGCTTAAACTATTCATCCAAAAAAATA-ATAT 30277871 CGAACTATGT Statistics Matches: 63, Mismatches: 10, Indels: 3 0.83 0.13 0.04 Matches are distributed among these distances: 41 3 0.05 42 56 0.89 43 4 0.06 ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28 Consensus pattern (41 bp): GAGCTTAAACTATTCATCCAAAAAAATAATATTCTAAGCAC Found at i:30278479 original size:292 final size:292 Alignment explanation
Indices: 30277949--30278541 Score: 1060 Period size: 292 Copynumber: 2.0 Consensus size: 292 30277939 GCAATTAGAT * * 30277949 CTGCTATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATTGTAAA 1 CTGCCATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA * * 30278014 ATCAAGCAATTTAGTAATAAGTTATGTTTTTTACATTCTAAATTATCAAAGTATACTTTTTAGTA 66 ATCAAGCAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA 30278079 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA 131 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA * * 30278144 TGCAACTTTTGGATGAAACTGTTGCCGATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA 196 TGCAACTTTTGGATGAAACTATTGCCAATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA 30278209 GACAGATGCAAGAACAAACACCTGGGTCAAAA 261 GACAGATGCAAGAACAAACACCTGGGTCAAAA * 30278241 CTGCCATGAGATATCATGTTATCTTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA 1 CTGCCATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA * 30278306 ATCAAGTAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA 66 ATCAAGCAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA * 30278371 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTGGGATGGATCGGGAGCTAAAGA 131 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA * * * * 30278436 TGCAACTTTTGGATGAAACTATTGCTAATGTCACAAGATTAAGCCATGAAAGTTTCAACATTGAA 196 TGCAACTTTTGGATGAAACTATTGCCAATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA * 30278501 GACCGATGCAAGAACAAACACCTGGGTCAAAA 261 GACAGATGCAAGAACAAACACCTGGGTCAAAA 30278533 CTGCCATGA 1 CTGCCATGA 30278542 ATGTTGCAAC Statistics Matches: 287, Mismatches: 14, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 292 287 1.00 ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36 Consensus pattern (292 bp): CTGCCATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA ATCAAGCAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA TGCAACTTTTGGATGAAACTATTGCCAATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA GACAGATGCAAGAACAAACACCTGGGTCAAAA Found at i:30283446 original size:23 final size:23 Alignment explanation
Indices: 30283420--30283464 Score: 81 Period size: 23 Copynumber: 2.0 Consensus size: 23 30283410 TAGATTTTTC 30283420 CTAAATATTATCACTAAATAATT 1 CTAAATATTATCACTAAATAATT * 30283443 CTAAATATTATTACTAAATAAT 1 CTAAATATTATCACTAAATAAT 30283465 ACAAAATTTA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 23 21 1.00 ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40 Consensus pattern (23 bp): CTAAATATTATCACTAAATAATT Found at i:30283471 original size:23 final size:23 Alignment explanation
Indices: 30283422--30283471 Score: 73 Period size: 23 Copynumber: 2.2 Consensus size: 23 30283412 GATTTTTCCT * * 30283422 AAATATTATCACTAAATAATTCT 1 AAATATTATCACTAAATAATACA * 30283445 AAATATTATTACTAAATAATACA 1 AAATATTATCACTAAATAATACA 30283468 AAAT 1 AAAT 30283472 TTAAAATCAA Statistics Matches: 24, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 23 24 1.00 ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36 Consensus pattern (23 bp): AAATATTATCACTAAATAATACA Found at i:30284936 original size:19 final size:19 Alignment explanation
Indices: 30284912--30284951 Score: 71 Period size: 19 Copynumber: 2.1 Consensus size: 19 30284902 TTTCAAATGA * 30284912 CCAAATTTCCTGTAATAGC 1 CCAAATTTCCTATAATAGC 30284931 CCAAATTTCCTATAATAGC 1 CCAAATTTCCTATAATAGC 30284950 CC 1 CC 30284952 GTTTTTTGTC Statistics Matches: 20, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 19 20 1.00 ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30 Consensus pattern (19 bp): CCAAATTTCCTATAATAGC Found at i:30295683 original size:125 final size:125 Alignment explanation
Indices: 30295461--30295705 Score: 427 Period size: 125 Copynumber: 2.0 Consensus size: 125 30295451 AGTCATCATT * * 30295461 GTTCGGGACTGTTTCAGCATGTGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT 1 GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT * * 30295526 GAATCGGGATTATTCTTATCATTGAAAATGATAGACTAATCTGAATTATTATTAACAAAA 66 GAATCGGGATTATTCTTATCATTGAAAATGATAAACTAATCTGAAATATTATTAACAAAA 30295586 GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT 1 GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT * * * 30295651 GAATTGGGATTATTCTTATCATTGAAAATGATAAATTGATCTGAAATATTATTAA 66 GAATCGGGATTATTCTTATCATTGAAAATGATAAACTAATCTGAAATATTATTAA 30295706 ATGCTTGAAG Statistics Matches: 113, Mismatches: 7, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 125 113 1.00 ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37 Consensus pattern (125 bp): GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT GAATCGGGATTATTCTTATCATTGAAAATGATAAACTAATCTGAAATATTATTAACAAAA Found at i:30302808 original size:43 final size:43 Alignment explanation
Indices: 30302745--30302913 Score: 132 Period size: 43 Copynumber: 3.9 Consensus size: 43 30302735 ATAGGATTTC * * * * 30302745 CGATATGTGCTCTCGCGTAAGACCACGTCTGGGACGTTGCCAT 1 CGATATGTGATTTCGAGTAAGACCACGTCTGGGACGTTGGCAT * * * * 30302788 CGATATGTGATTTCGAGTAAGAACATGTCTGGGACATCGGCAT 1 CGATATGTGATTTCGAGTAAGACCACGTCTGGGACGTTGGCAT * * 30302831 CG-TAATTGTGA-TTCGTGTAAGACC-CTGTCTAGGACAG-TGGCAT 1 CGAT-A-TGTGATTTCGAGTAAGACCAC-GTCTGGGAC-GTTGGCAT * * * * 30302874 CGACATGTGATTAC-ATGTAAGACCATGTGTGGGACGTTGG 1 CGATATGTGATTTCGA-GTAAGACCACGTCTGGGACGTTGG 30302914 AATTGTACGA Statistics Matches: 97, Mismatches: 20, Indels: 18 0.72 0.15 0.13 Matches are distributed among these distances: 42 7 0.07 43 85 0.88 44 5 0.05 ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28 Consensus pattern (43 bp): CGATATGTGATTTCGAGTAAGACCACGTCTGGGACGTTGGCAT Found at i:30314463 original size:21 final size:21 Alignment explanation
Indices: 30314419--30314464 Score: 56 Period size: 21 Copynumber: 2.2 Consensus size: 21 30314409 AAACTTGTAT * * 30314419 ATCTACCATTAAACCTTCATA 1 ATCTACCATTAAACATTCAAA * * 30314440 ATCTATCATTAAACATTTAAA 1 ATCTACCATTAAACATTCAAA 30314461 ATCT 1 ATCT 30314465 TAAGCATTCA Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 21 21 1.00 ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37 Consensus pattern (21 bp): ATCTACCATTAAACATTCAAA Found at i:30319790 original size:21 final size:20 Alignment explanation
Indices: 30319764--30319813 Score: 73 Period size: 20 Copynumber: 2.5 Consensus size: 20 30319754 ACGGCTTGCC * 30319764 CACACGGGTGAGTCCCATGTT 1 CACACGGGCGAG-CCCATGTT * 30319785 CACACGAGCGAGCCCATGTT 1 CACACGGGCGAGCCCATGTT 30319805 CACACGGGC 1 CACACGGGC 30319814 CTGTGACCCA Statistics Matches: 26, Mismatches: 3, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 20 16 0.62 21 10 0.38 ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16 Consensus pattern (20 bp): CACACGGGCGAGCCCATGTT Found at i:30327898 original size:43 final size:43 Alignment explanation
Indices: 30327851--30328092 Score: 231 Period size: 43 Copynumber: 5.6 Consensus size: 43 30327841 CCAATGTCCT * * * 30327851 AGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCC 1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAGCCC * * 30327894 AGACGTGGTTTTACATGTAATCACATATCGATG-CAACTATCCC 1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAAC-AGCCC * ** * * * 30327937 AGACATGGTCTTACACATAATCACACATCGATGCCAACATCCT 1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAGCCC * * * ** 30327980 AGATGTGGTCTTACATGTAATCACATATCGATGCGAA-TGTCTT 1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAG-CCC * * * 30328023 AGACGTGGTCTTACACGTAATCACATATCGATGCC-ACTGTCCT 1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAG-CCC * * 30328066 AAACAG-GGTCTTACACGTAATCACATA 1 AGAC-GTGGTCTTACATGTAATCACATA 30328093 ACGGAAATCC Statistics Matches: 169, Mismatches: 25, Indels: 10 0.83 0.12 0.05 Matches are distributed among these distances: 42 5 0.03 43 159 0.94 44 5 0.03 ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27 Consensus pattern (43 bp): AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAGCCC Found at i:30327971 original size:86 final size:86 Alignment explanation
Indices: 30327869--30328092 Score: 265 Period size: 86 Copynumber: 2.6 Consensus size: 86 30327859 TCTTACATGC * * 30327869 AATCACATATCAATGCCAACAGCCCAGACGTGGTTTTACATGTAATCACATATCGATGC-AACTA 1 AATCACATATCGATGCCAACAGCCCAGACGTGGTCTTACATGTAATCACATATCGATGCGAA-TA 30327933 TCCCAGACATGGTCTTACACAT 65 TCCCAGACATGGTCTTACACAT * * * * * 30327955 AATCACACATCGATGCCAACATCCTAGATGTGGTCTTACATGTAATCACATATCGATGCGAATGT 1 AATCACATATCGATGCCAACAGCCCAGACGTGGTCTTACATGTAATCACATATCGATGCGAATAT ** * * 30328020 CTTAGACGTGGTCTTACACGT 66 CCCAGACATGGTCTTACACAT * * * * 30328041 AATCACATATCGATGCC-ACTGTCCTAAACAG-GGTCTTACACGTAATCACATA 1 AATCACATATCGATGCCAACAG-CCCAGAC-GTGGTCTTACATGTAATCACATA 30328093 ACGGAAATCC Statistics Matches: 118, Mismatches: 17, Indels: 6 0.84 0.12 0.04 Matches are distributed among these distances: 85 2 0.02 86 113 0.96 87 3 0.03 ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27 Consensus pattern (86 bp): AATCACATATCGATGCCAACAGCCCAGACGTGGTCTTACATGTAATCACATATCGATGCGAATAT CCCAGACATGGTCTTACACAT Found at i:30328076 original size:129 final size:129 Alignment explanation
Indices: 30327838--30328090 Score: 328 Period size: 129 Copynumber: 2.0 Consensus size: 129 30327828 ATATCGTACA ** 30327838 ATGCCAATGTCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCCAGACGTGGT 1 ATGCCAACATCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCCAGACGTGGT * * * * 30327903 TTTACATGTAATCACATATCGATGCAACTATCCCAGACATGGTCTTACACATAATCACACATCG 66 CTTACACGTAATCACATATCGATGCAACTATCCCAAACAGGGTCTTACACATAATCACACATCG * * * * * * ** 30327967 ATGCCAACATCCTAGATGTGGTCTTACATGTAATCACATATCGATGCGAA-TGTCTTAGACGTGG 1 ATGCCAACATCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAG-CCCAGACGTGG * * * * 30328031 TCTTACACGTAATCACATATCGATGCCACTGTCCTAAACAGGGTCTTACACGTAATCACA 65 TCTTACACGTAATCACATATCGATGCAACTATCCCAAACAGGGTCTTACACATAATCACA 30328091 TAACGGAAAT Statistics Matches: 105, Mismatches: 18, Indels: 2 0.84 0.14 0.02 Matches are distributed among these distances: 128 1 0.01 129 104 0.99 ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27 Consensus pattern (129 bp): ATGCCAACATCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCCAGACGTGGT CTTACACGTAATCACATATCGATGCAACTATCCCAAACAGGGTCTTACACATAATCACACATCG Found at i:30329597 original size:43 final size:43 Alignment explanation
Indices: 30329416--30329598 Score: 174 Period size: 43 Copynumber: 4.3 Consensus size: 43 30329406 CATATGTCAT * * * ** * 30329416 GACATTGG-ATTCGATATGTGTTTTCGTGTAAGACCACATCTGG 1 GACATTGGCA-TCGATATTTGATTACGTGTAAGACCATGTCTAG * * 30329459 GACATTGGCATCGACT-TATGATTTACGTGTAAGACCATGTATAG 1 GACATTGGCATCGA-TATTTGA-TTACGTGTAAGACCATGTCTAG *** * * 30329503 GACATCAACATCG-TATTTGATTTCGTGTAAGACCCTGTCTAG 1 GACATTGGCATCGATATTTGATTACGTGTAAGACCATGTCTAG * * 30329545 GACAATGGCATCGATATTTGATTACGTGTAAGACCATGTCTGG 1 GACATTGGCATCGATATTTGATTACGTGTAAGACCATGTCTAG * 30329588 GACGTTGGCAT 1 GACATTGGCAT 30329599 TGTATGAGCT Statistics Matches: 112, Mismatches: 23, Indels: 10 0.77 0.16 0.07 Matches are distributed among these distances: 42 29 0.26 43 54 0.48 44 29 0.26 ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32 Consensus pattern (43 bp): GACATTGGCATCGATATTTGATTACGTGTAAGACCATGTCTAG Found at i:30336911 original size:18 final size:18 Alignment explanation
Indices: 30336888--30336923 Score: 63 Period size: 18 Copynumber: 2.0 Consensus size: 18 30336878 TGTCCCCTGT * 30336888 TTTGAGAAAAAATTTCAA 1 TTTGAGAAAAAAATTCAA 30336906 TTTGAGAAAAAAATTCAA 1 TTTGAGAAAAAAATTCAA 30336924 ACATTCATGA Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.53, C:0.06, G:0.11, T:0.31 Consensus pattern (18 bp): TTTGAGAAAAAAATTCAA Found at i:30338586 original size:27 final size:26 Alignment explanation
Indices: 30338549--30338632 Score: 105 Period size: 27 Copynumber: 3.2 Consensus size: 26 30338539 AGCATGGCTG * 30338549 CCAGAACAGATATTGTGACAGAGTCA 1 CCAGAACAGATATTGTGACAGAGCCA * * 30338575 CCAGATACAGATATTGTGGCTGAGCCA 1 CCAGA-ACAGATATTGTGACAGAGCCA ** 30338602 CCAGAACAGATATTTGTGGTAGAGCCA 1 CCAGAACAGATA-TTGTGACAGAGCCA 30338629 CCAG 1 CCAG 30338633 TATACTCCCT Statistics Matches: 51, Mismatches: 5, Indels: 3 0.86 0.08 0.05 Matches are distributed among these distances: 26 12 0.24 27 39 0.76 ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20 Consensus pattern (26 bp): CCAGAACAGATATTGTGACAGAGCCA Found at i:30348504 original size:47 final size:47 Alignment explanation
Indices: 30348384--30349015 Score: 1048 Period size: 47 Copynumber: 13.4 Consensus size: 47 30348374 CCTTCGGGGA * * * * * * * 30348384 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGCGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-GC * * 30348432 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 30348479 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * * 30348526 CTTATTACATATATACACTTTCACATTCATCACATCGACTATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC * 30348573 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * 30348620 CTTATCACATATATACACTCTCACATTCATCACATCGGCTATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * 30348667 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC * 30348714 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 30348761 CTTATCACATATATACACTTTCACATTCATCACATCGGGCCATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATC-GGCCATTAGGC 30348809 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * 30348856 CTTATCACATATATACGCTTTCACATTCATCACATCGGCTATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * 30348903 CTTATCATATATATACACTTTCACATTCATCACATCGCCCATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 30348950 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC 30348997 CTTATCACATATATACACT 1 CTTATCACATATATACACT 30349016 GTCTTGGCTG Statistics Matches: 554, Mismatches: 29, Indels: 3 0.95 0.05 0.01 Matches are distributed among these distances: 47 471 0.85 48 83 0.15 ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32 Consensus pattern (47 bp): CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC Done.