Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 97 of 349
Found at i:30000966 original size:27 final size:27
Alignment explanation
Indices: 30000558--30000966 Score: 405
Period size: 27 Copynumber: 15.1 Consensus size: 27
30000548 AAGTACTCCC
30000558 GATTTACAGAATTACCGTTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* *
30000584 CAGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTT
* *
30000612 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* ** **
30000639 AATTTACAGAATTACTATTTTACCCAC
1 GATTTACAGAATTACCGTTTTACCCTT
*
30000666 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
** *
30000693 GATTTGTAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
30000720 GATTTACAGAATTACTGGTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
30000746 CAGTTTACAAAATTATCGTTTTA-CCTT
1 GA-TTTACAGAATTACCGTTTTACCCTT
*
30000773 CGATTTACAGAATTACCATTTTACCC-T
1 -GATTTACAGAATTACCGTTTTACCCTT
* *
30000800 CAGTTTACAGAATTACTGTTTTACCCTT
1 GA-TTTACAGAATTACCGTTTTACCCTT
** * *
30000828 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
** * *
30000855 GATTTGTAAAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
30000882 AATTTACAGAATTACTGGTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
30000908 CAGTTTACAAAATTATCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTT
*
30000936 GATTTACAGAATTACCATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
30000963 GATT
1 GATT
30000967 GTGAAATTAC
Statistics
Matches: 315, Mismatches: 58, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
26 8 0.03
27 300 0.95
28 7 0.02
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTT
Found at i:30001001 original size:27 final size:27
Alignment explanation
Indices: 30000971--30001166 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
30000961 TTGATTGTGA
* *
30000971 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
30000998 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
30001025 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
30001052 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
30001079 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
30001106 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * * *
30001133 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
30001160 AATTACC
1 AATTACC
30001167 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:30001403 original size:27 final size:26
Alignment explanation
Indices: 30001365--30001447 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
30001355 CGGAGGAAGC
*
30001365 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
30001392 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
30001418 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
30001445 GTT
1 GTT
30001448 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:30001568 original size:22 final size:22
Alignment explanation
Indices: 30001542--30001593 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
30001532 TTAATATTTC
30001542 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
30001564 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
30001586 CGTGCCAA
1 TGTGCCAA
30001594 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:30001780 original size:27 final size:27
Alignment explanation
Indices: 30001758--30001830 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
30001748 TAGGTGGGTT
*
30001758 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
30001785 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
30001812 TGTCACGATATCTGT-TCTG
1 TGCCACAATATCTGTATCTG
30001831 TCAGCCATGC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 4 0.10
27 36 0.88
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:30001958 original size:6 final size:6
Alignment explanation
Indices: 30001949--30002050 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
30001939 TTGCATTCAC
* * *
30001949 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
30001998 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTA
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
30002046 ATTCT
1 ATTCT
30002051 CATTTTGGTT
Statistics
Matches: 80, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
5 6 0.08
6 67 0.84
7 5 0.06
8 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:30002014 original size:30 final size:30
Alignment explanation
Indices: 30001949--30002050 Score: 143
Period size: 30 Copynumber: 3.4 Consensus size: 30
30001939 TTGCATTCAC
* *
30001949 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
30001980 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
30002010 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
30002040 ATTCTAATTCT
1 ATTCTGATTCT
30002051 CATTTTGGTT
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
29 1 0.02
30 43 0.66
31 21 0.32
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:30011184 original size:3 final size:3
Alignment explanation
Indices: 30011176--30011218 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
30011166 TAGGTTCATA
30011176 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
30011219 GTGTCATGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (3 bp):
TAC
Found at i:30014250 original size:16 final size:16
Alignment explanation
Indices: 30014209--30014253 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
30014199 AATTTTATAA
30014209 AGTACTTAA-TTTTTC
1 AGTACTTAATTTTTTC
**
30014224 AACACTT-ATTTTTTC
1 AGTACTTAATTTTTTC
30014239 AGTACTTAATTTTTT
1 AGTACTTAATTTTTT
30014254 TTAGTTTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 1 0.04
15 16 0.67
16 7 0.29
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (16 bp):
AGTACTTAATTTTTTC
Found at i:30021497 original size:42 final size:42
Alignment explanation
Indices: 30021438--30021547 Score: 168
Period size: 42 Copynumber: 2.6 Consensus size: 42
30021428 AGGGTTACTA
*
30021438 AGACTACGTGTAAGACCATATCT-GGGATATGGAATCGATATG
1 AGACTTCGTGTAAGACCATATCTAGGG-TATGGAATCGATATG
* *
30021480 AGACTTCTTGTAAGACCATATCTAGGGTATGGCATCGATATG
1 AGACTTCGTGTAAGACCATATCTAGGGTATGGAATCGATATG
*
30021522 AGACTTCGTGTAAGACCATAGCTAGG
1 AGACTTCGTGTAAGACCATATCTAGG
30021548 CTATTAGCAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 59 0.95
43 3 0.05
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
AGACTTCGTGTAAGACCATATCTAGGGTATGGAATCGATATG
Found at i:30024036 original size:16 final size:16
Alignment explanation
Indices: 30024017--30024047 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30024007 CTTCTTCACT
30024017 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
30024033 TACTTACTTACTTAA
1 TACTCACTTACTTAA
30024048 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:30024053 original size:20 final size:20
Alignment explanation
Indices: 30024014--30024053 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
30024004 AAACTTCTTC
* *
30024014 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
30024034 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
30024054 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:30024426 original size:54 final size:53
Alignment explanation
Indices: 30024297--30024498 Score: 178
Period size: 55 Copynumber: 3.8 Consensus size: 53
30024287 TTGAAACATT
* * *
30024297 ACCATTGCTATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
* *
30024350 ACCAATGCCATGCCTT-AGCATGGTCTT-CATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGA-CATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC
* *** *
30024404 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTC
* * * * *
30024458 ACCAATTGACATGCCTTGGCACGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
30024499 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
51 2 0.02
52 16 0.13
53 26 0.21
54 34 0.28
55 42 0.34
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
Found at i:30024498 original size:55 final size:52
Alignment explanation
Indices: 30024254--30024498 Score: 196
Period size: 54 Copynumber: 4.6 Consensus size: 52
30024244 CTTACTATTT
* * ** *
30024254 CCATGACTTGTCATGGTCTTATGTGGTATCCTT---TT-GAAACATTACCATTG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AAC-TTACCAATG
* * * *
30024304 CTATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA-GAACTTACCAATG
* * *
30024357 CCATGCCTTAGCATGGTCTT-CATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCC-T-TAG-AACTTACCAATG
* * * *
30024411 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAATTG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AA-CTTACCAA-TG
* *
30024466 ACATGCCTTGGCACGGTCTTACATGGTATCCTT
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
30024499 AAACCCTAAT
Statistics
Matches: 154, Mismatches: 28, Indels: 21
0.76 0.14 0.10
Matches are distributed among these distances:
50 28 0.18
51 2 0.01
52 11 0.07
53 32 0.21
54 40 0.26
55 39 0.25
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (52 bp):
CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAACTTACCAATG
Found at i:30032322 original size:23 final size:23
Alignment explanation
Indices: 30032291--30032346 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
30032281 TTCCATCCCA
30032291 AAAG-ACATCAATTCATCCATAG
1 AAAGAACATCAATTCATCCATAG
30032313 AAAGAACATCAATTCATCCATAG
1 AAAGAACATCAATTCATCCATAG
30032336 AAAGAACATCA
1 AAAGAACATCA
30032347 TATATGCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 4 0.12
23 29 0.88
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.20
Consensus pattern (23 bp):
AAAGAACATCAATTCATCCATAG
Found at i:30040476 original size:44 final size:46
Alignment explanation
Indices: 30040420--30040539 Score: 147
Period size: 44 Copynumber: 2.6 Consensus size: 46
30040410 GTGTATACGT
**
30040420 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-ACGA-AATTTAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAAC-ATAATCGAG
* * * *
30040465 GC-GATGCATGTCCCAGACACGTCTTACACTGGCTAACATCATCGCG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-AACATAATCGAG
30040511 GCTGATGCATGTCCCAGACATGTCTTACA
1 GCTGATGCATGTCCCAGACATGTCTTACA
30040540 TTGGCACTCA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 29 0.45
45 3 0.05
46 7 0.11
47 25 0.39
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCAACATAATCGAG
Found at i:30040527 original size:47 final size:46
Alignment explanation
Indices: 30040415--30040631 Score: 167
Period size: 47 Copynumber: 4.7 Consensus size: 46
30040405 CTCTTGTGTA
* * *
30040415 TACGTGCTGATGCATGTCCCAGACATGTCTTACACTAGC-ACGA-AATT
1 TACG-GCTGATGCATGTCCCAGACACGTCTTACACTGGCAAC-ATCA-T
30040462 TA-GGC-GATGCATGTCCCAGACACGTCTTACACTGGCTAACATCAT
1 TACGGCTGATGCATGTCCCAGACACGTCTTACACTGGC-AACATCAT
** * * * * *
30040507 CGCGGCTGATGCATGTCCCAGACATGTCTTACATTGGCACTCACCTT
1 TACGGCTGATGCATGTCCCAGACACGTCTTACACTGGCA-ACATCAT
* ** * * *
30040554 TAC-GCCGATGCCATGTCCCAGACGTGGTCTTACACGGGCTATCATGA-
1 TACGGCTGATG-CATGTCCCAGAC-ACGTCTTACACTGGC-AACATCAT
*
30040601 TACGACTGATGCATGTCCCAGACACGTCTTA
1 TACGGCTGATGCATGTCCCAGACACGTCTTA
30040632 AACTAGCCCT
Statistics
Matches: 136, Mismatches: 24, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
44 29 0.21
45 4 0.03
46 20 0.15
47 63 0.46
48 19 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (46 bp):
TACGGCTGATGCATGTCCCAGACACGTCTTACACTGGCAACATCAT
Found at i:30040622 original size:94 final size:91
Alignment explanation
Indices: 30040370--30040687 Score: 280
Period size: 94 Copynumber: 3.4 Consensus size: 91
30040360 CTCCATCGAG
* * * * **
30040370 GCCGATGCCATGTCCGAGACATGGTTTTACACTAGCTCTTGTGTATACGTGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGAC-TGGTCTTACACTGGCTATCATG-ATACG-GCTGATGCATGTCCC
*
30040435 AGACATGTCTTACACTAGCACGAAATTTA
63 AGACATGTCTTACACTAGCACCAAATTTA
* ** * * *
30040464 GGCGATG-CATGTCCCAGACACGTCTTACACTGGCTAACATCATCGCGGCTGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACTGGTCTTACACTGGCTATCATGAT-ACGGCTGATGCATGTCCCAG
* * **
30040528 ACATGTCTTACATTGGCACTCACCTTTA
65 ACATGTCTTACACTAGCAC-CAAATTTA
* *
30040556 CGCCGATGCCATGTCCCAGACGTGGTCTTACACGGGCTATCATGATACGACTGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGAC-TGGTCTTACACTGGCTATCATGATACGGCTGATGCATGTCCCA
* * * ** *
30040621 GACACGTCTTAAACTAGCCCTCGTATCAATA
64 GACATGTCTTACACTAGCAC-CAAAT--TTA
* *
30040652 -CCGATGCCATGTCCCAGACATGTTCTTATACTGGCT
1 GCCGATGCCATGTCCCAGAC-TGGTCTTACACTGGCT
30040688 CTCACATAAC
Statistics
Matches: 179, Mismatches: 38, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
91 36 0.20
92 20 0.11
93 17 0.09
94 85 0.47
95 19 0.11
96 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (91 bp):
GCCGATGCCATGTCCCAGACTGGTCTTACACTGGCTATCATGATACGGCTGATGCATGTCCCAGA
CATGTCTTACACTAGCACCAAATTTA
Found at i:30042884 original size:23 final size:23
Alignment explanation
Indices: 30042845--30042893 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
30042835 TCAAGATGGG
* *
30042845 AAATAGGAAAGAGAAAGAATAGA
1 AAATAGGAAAGAAAAAGAAGAGA
*
30042868 AAAT-GGAAAGACAAAAGGAGAGA
1 AAATAGGAAAGA-AAAAGAAGAGA
30042891 AAA
1 AAA
30042894 GAATAGATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.65, C:0.02, G:0.27, T:0.06
Consensus pattern (23 bp):
AAATAGGAAAGAAAAAGAAGAGA
Found at i:30048036 original size:25 final size:24
Alignment explanation
Indices: 30047968--30048091 Score: 115
Period size: 25 Copynumber: 5.0 Consensus size: 24
30047958 AAATAGAACA
* *
30047968 CCACAAAGGTTTTACAGAGAGTTCT
1 CCACAAAGGCTTT-CAGAGAATTCT
* * *
30047993 CCACAAAGGCCTTACAGAGTATTCG
1 CCACAAAGG-CTTTCAGAGAATTCT
*
30048018 CCACAAAGGCTTTCTAGAGAATTTT
1 CCACAAAGGCTTTC-AGAGAATTCT
*
30048043 CC-CTAAAGGCTTTCAAGAGAATTCA
1 CCAC-AAAGGCTTTC-AGAGAATTCT
*
30048068 CCACAAAGGCTTTCCAGATAATTC
1 CCACAAAGGCTTT-CAGAGAATTC
30048092 GTGTTTACTG
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
24 5 0.06
25 72 0.89
26 4 0.05
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (24 bp):
CCACAAAGGCTTTCAGAGAATTCT
Found at i:30051361 original size:43 final size:43
Alignment explanation
Indices: 30051312--30051463 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 43
30051302 CCCAGACGAA
* *
30051312 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
* * * * * *
30051355 GTCTTACACGAAATCATACA-CGATGCTAATGTCCCAGAAATG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
* * * *
30051397 GTCTTACATGTAGATCTCAA-ATCGATGCCAAC-GTTCCAGAC-GTG
1 GTCTTACACG-AAATC-AAATATCGATGCC-ACTGTCCCAGACAG-G
*
30051441 GTCTTACACGAAATCACATATCG
1 GTCTTACACGAAATCAAATATCG
30051464 GAATCCCATG
Statistics
Matches: 82, Mismatches: 21, Indels: 12
0.71 0.18 0.10
Matches are distributed among these distances:
42 28 0.34
43 29 0.35
44 24 0.29
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
Found at i:30051392 original size:42 final size:44
Alignment explanation
Indices: 30051331--30051456 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 44
30051321 GTAATCAAAT
* *
30051331 ATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAT-AC
1 ATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATCAA
* * * * *
30051374 A-CGATGCTAATGTCCCAGAAATGGTCTTACATGTAGATC-TCAA
1 ATCGATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCATCAA
* *
30051417 ATCGATGCCAACGTTCCAGAC-GTGGTCTTACACGAAATCA
1 ATCGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCA
30051457 CATATCGGAA
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
42 28 0.44
43 11 0.17
44 25 0.39
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (44 bp):
ATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATCAA
Found at i:30052587 original size:13 final size:13
Alignment explanation
Indices: 30052569--30052593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30052559 ACAAAAGATA
30052569 AAATTTTCACACG
1 AAATTTTCACACG
30052582 AAATTTTCACAC
1 AAATTTTCACAC
30052594 ATATTACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:30054258 original size:45 final size:46
Alignment explanation
Indices: 30054148--30054329 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
30054138 TATATATACA
* * * * *
30054148 CATCTCATACATATCTCACATTAGCCATTTGGCTTCACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
30054194 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATAT-
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
30054239 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
30054285 CATCTCATACACATTTCGCACTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
30054330 ATACACTTCC
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 45 0.36
46 80 0.64
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:30054303 original size:91 final size:91
Alignment explanation
Indices: 30054148--30054329 Score: 274
Period size: 91 Copynumber: 2.0 Consensus size: 91
30054138 TATATATACA
* * *
30054148 CATCTCATACATATCTCACATTAGCCATTTGGCTTCACCACATATCCATCTCATACACGTTTCGC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATCCATCTCATACACATTTCGC
* *
30054213 ATTAGCCATTCGGCTTTACCTCATAT
66 ACTAGCCATTCGGCTTTACCACATAT
* * * * *
30054239 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACATTTCGC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATCCATCTCATACACATTTCGC
30054304 ACTAGCCATTCGGCTTTACCACATAT
66 ACTAGCCATTCGGCTTTACCACATAT
30054330 ATACACTTCC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (91 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATCCATCTCATACACATTTCGC
ACTAGCCATTCGGCTTTACCACATAT
Found at i:30054372 original size:22 final size:22
Alignment explanation
Indices: 30054346--30054421 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
30054336 TTCCACGTTC
30054346 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
30054368 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
30054392 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
30054415 ATCACAT
1 ATCACAT
30054422 ATATGCATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:30054374 original size:47 final size:47
Alignment explanation
Indices: 30054308--30054634 Score: 494
Period size: 47 Copynumber: 7.0 Consensus size: 47
30054298 TTTCGCACTA
* * * * *
30054308 GCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTG
*
30054355 GCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
30054402 GCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATCG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
30054449 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
30054496 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
30054543 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * ** *
30054590 GCCATTCGGCCTTATCTCATATATACACATTCACATTCAGCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
30054635 AAAATCCTAA
Statistics
Matches: 260, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 259 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:30058521 original size:40 final size:40
Alignment explanation
Indices: 30058462--30058715 Score: 424
Period size: 40 Copynumber: 6.4 Consensus size: 40
30058452 CCTTCGAGGT
30058462 TTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
30058501 TTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
30058541 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
30058581 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGG-AC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGAAC
30058621 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GAGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA-AC
* *
30058661 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
30058701 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
30058716 ATAACTCTCA
Statistics
Matches: 202, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.00
39 7 0.03
40 191 0.95
41 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:30060250 original size:46 final size:46
Alignment explanation
Indices: 30060197--30060379 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
30060187 TATATATACA
* * **
30060197 CATCTCATACATATCTCACATTAGCCATTTAGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
30060243 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* **
30060289 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTTATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
*
30060335 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
30060380 ATACACTTCC
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 124 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:30060424 original size:47 final size:47
Alignment explanation
Indices: 30060353--30060590 Score: 334
Period size: 47 Copynumber: 5.1 Consensus size: 47
30060343 ACACATTTCG
* * * * * *
30060353 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
30060400 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
30060447 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
30060494 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
30060541 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
30060588 CAT
1 CAT
30060591 AAAATCCTAA
Statistics
Matches: 175, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 174 0.99
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:30072687 original size:25 final size:25
Alignment explanation
Indices: 30072659--30072734 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
30072649 CTAATGGCCG
30072659 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
30072684 ATGTGAT-AAAGCCTAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
30072706 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
30072731 ATGT
1 ATGT
30072735 AACAAGGCCT
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
22 7 0.21
23 8 0.24
24 8 0.24
25 11 0.32
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:30073025 original size:47 final size:47
Alignment explanation
Indices: 30072446--30073025 Score: 910
Period size: 47 Copynumber: 12.3 Consensus size: 47
30072436 ACAAGATATG
*
30072446 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
30072493 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
*
30072540 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
30072587 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
30072634 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
30072681 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
30072728 TATATGTAACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
30072775 TATATGTGATAAAGCCTAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
30072822 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
30072869 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
30072916 TATATGAGATAAGACCTAATGGCCGATGTGATGGAGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGAT-GA--ATGTGAAAGTGTA
* *
30072966 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
30073013 TAAATGTGATAAG
1 TATATGTGATAAG
30073026 TCCCGAAGGG
Statistics
Matches: 486, Mismatches: 42, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
46 2 0.00
47 439 0.90
48 4 0.01
49 1 0.00
50 40 0.08
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:30076429 original size:13 final size:12
Alignment explanation
Indices: 30076405--30076450 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
30076395 TGTAAATAAG
*
30076405 AAAAATATCTTT
1 AAAAATTTCTTT
30076417 AAAAATTTCCTTT
1 AAAAATTT-CTTT
*
30076430 AATAATTTCTTT
1 AAAAATTTCTTT
30076442 AGAAAATTT
1 A-AAAATTT
30076451 TCTCTTTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 12 0.41
13 17 0.59
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (12 bp):
AAAAATTTCTTT
Found at i:30078786 original size:14 final size:14
Alignment explanation
Indices: 30078767--30078795 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
30078757 TAAGTTACTT
30078767 AATCTTTGATGCAA
1 AATCTTTGATGCAA
30078781 AATCTTTGATGCAA
1 AATCTTTGATGCAA
30078795 A
1 A
30078796 CATATTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
AATCTTTGATGCAA
Found at i:30082009 original size:57 final size:56
Alignment explanation
Indices: 30081875--30082010 Score: 139
Period size: 57 Copynumber: 2.4 Consensus size: 56
30081865 TATACAATAA
* * * * *
30081875 GATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTAAGGAGCTTGATCTG
1 GATTACCAGTCCAGGCTAAAT-CTATCTATAACATATGCTCGAAGGAGCTTGATCAG
* * * * *
30081932 GATTACCCGTCCGGGATAAATCTAATCTATAACATATGCTCGGAGGA-CTTATATCAG
1 GATTACCAGTCCAGGCTAAATCT-ATCTATAACATATGCTCGAAGGAGCTT-GATCAG
*
30081989 GATTACCAATCCAGGCTAAATC
1 GATTACCAGTCCAGGCTAAATC
30082011 CTTTTTGTAA
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
56 5 0.08
57 58 0.92
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (56 bp):
GATTACCAGTCCAGGCTAAATCTATCTATAACATATGCTCGAAGGAGCTTGATCAG
Found at i:30086377 original size:68 final size:71
Alignment explanation
Indices: 30086249--30086384 Score: 190
Period size: 68 Copynumber: 1.9 Consensus size: 71
30086239 ATTAAACTTG
30086249 ATCACTTTAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATAT
1 ATCACTTTAATATTAAATTAATAGAATA-TTATCTACAAGATAAACATTAAATTAAATTTAATAT
30086314 TAAGATA
65 TAAGATA
* * **
30086321 ATCACTTTAATATTGAATTAATA-AA-A-TACTCT-TAAGATAAGTATTAAATTAAATTTAATAT
1 ATCACTTTAATATTAAATTAATAGAATATTA-TCTACAAGATAAACATTAAATTAAATTTAATAT
30086382 TAA
65 TAA
30086385 ATTTATTAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
68 31 0.53
69 3 0.05
70 1 0.02
71 2 0.03
72 22 0.37
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (71 bp):
ATCACTTTAATATTAAATTAATAGAATATTATCTACAAGATAAACATTAAATTAAATTTAATATT
AAGATA
Found at i:30090192 original size:30 final size:30
Alignment explanation
Indices: 30090135--30090192 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
30090125 TAGGCACTTC
*
30090135 CACACGGGTGATTCACACGCCCCTGTGTGA
1 CACACGGGTGATCCACACGCCCCTGTGTGA
* *
30090165 CACACGGGTAGA-CCACATGCCCGTGTGT
1 CACACGGGT-GATCCACACGCCCCTGTGT
30090193 CATGGTCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGGTGATCCACACGCCCCTGTGTGA
Found at i:30095555 original size:48 final size:49
Alignment explanation
Indices: 30095436--30095621 Score: 216
Period size: 48 Copynumber: 3.8 Consensus size: 49
30095426 AAGATGTTGG
* * * * *
30095436 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCT-ACATATCAATGCCGA
* * *
30095486 TGCCATGTTCCAAACATGGTCTTACACTAGC-CTACATGTCAAGGCCGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA
* * * *
30095534 TACCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATAAATGTCGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA
* *
30095582 TGCCATGTTCCAAACATGGTCTTACACTGGCTC-ACATATC
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATC
30095622 CCTAGTATCA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
48 82 0.72
49 4 0.04
50 28 0.25
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (49 bp):
TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA
Found at i:30098431 original size:31 final size:31
Alignment explanation
Indices: 30098203--30098430 Score: 368
Period size: 31 Copynumber: 7.4 Consensus size: 31
30098193 ACGGTTACTA
* * *
30098203 GGCCGAAGCTTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTATCATAAATCATATCACTG
30098234 GGCCGAA-CCTTATCATAAATCATATCACTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
*
30098264 GGCCGAAGCCTTATCATAATTCATATCACTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
30098295 GGCCGAAGCCTTATCATAAATCATATCACTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
*
30098326 GGCCGAAGCCTTATCATAAATCATATCTCTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
*
30098357 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
* * *
30098388 GGCCGAATCCTTTTCATAAATCATATCATTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
30098419 GGCCGAAGCCTT
1 GGCCGAAGCCTT
30098431 TACTGTAAAC
Statistics
Matches: 185, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
30 27 0.15
31 158 0.85
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTATCATAAATCATATCACTG
Found at i:30098664 original size:24 final size:24
Alignment explanation
Indices: 30098637--30098719 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
30098627 CTGGAGGCCT
30098637 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
**
30098661 AGCCCTTTTTGGTAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
** *
30098686 AGCCCTTTTCGGTAAACTGGGGAAA
1 AGCCCTTTT-AATAAACTGGGGCAA
30098711 AGCCCTTTT
1 AGCCCTTTT
30098720 CGGTAAACTA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 1 0.02
24 13 0.25
25 39 0.74
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:30098678 original size:25 final size:25
Alignment explanation
Indices: 30098650--30098743 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
30098640 CTCTTTTAAT
*
30098650 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
30098675 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
30098700 AACTGGGGAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
30098725 AACTAGGGCATA-CCCTTTT
1 AACTGGGGCAAAGCCCTTTT
30098744 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 7 0.11
25 57 0.89
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:30099614 original size:27 final size:27
Alignment explanation
Indices: 30099552--30099629 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
30099542 GGGCATATTC
30099552 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
30099579 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
30099606 GT-ATTTTTACC-TAATAGGGGTATT
1 GTCA-TTTTACCAT-ACAGGGGTATT
30099630 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:30099700 original size:27 final size:27
Alignment explanation
Indices: 30099647--30099943 Score: 215
Period size: 27 Copynumber: 11.0 Consensus size: 27
30099637 TTTCACCCTA
* * * *
30099647 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
30099674 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
30099701 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* *
30099730 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * * *
30099757 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
30099784 TGAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
30099811 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
30099838 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
30099865 CAA-GGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
30099891 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
30099918 CAAGGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
30099944 TCGAGGTAAA
Statistics
Matches: 222, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
26 22 0.10
27 171 0.77
28 14 0.06
29 15 0.07
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:30099951 original size:80 final size:80
Alignment explanation
Indices: 30099647--30099938 Score: 257
Period size: 80 Copynumber: 3.6 Consensus size: 80
30099637 TTTCACCCTA
* * * ** * ** *
30099647 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
* *
30099712 CT-ATAATTTTTAGAAAGT
66 -TGGTAA-TTTTA-CAA-T
** * * ***
30099730 CAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 CAAGGGTATTT-TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATT
*
30099794 TTGGTAATTTTACAAA
65 TTGGTAATTTTACAAT
* ** * * *
30099810 CTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACCAA-GGTATT
1 C-AAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATT
*
30099874 TTGGTAATTTTACTGAT
65 TTGGTAATTTTAC-AAT
*
30099891 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
30099939 GTAAATCGAG
Statistics
Matches: 166, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
80 62 0.37
81 47 0.28
82 6 0.04
83 50 0.30
84 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TGGTAATTTTACAAT
Found at i:30099988 original size:27 final size:27
Alignment explanation
Indices: 30099930--30100059 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
30099920 AGGGTATTTT
*
30099930 AGTAATTTTGTAAATCGA-GGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
30099956 AATAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
30099983 AGTAATTCTATAAATCGATGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
30100010 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
30100037 AGTAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
30100060 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 15 0.17
27 73 0.83
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:30100031 original size:54 final size:53
Alignment explanation
Indices: 30099905--30100053 Score: 181
Period size: 54 Copynumber: 2.8 Consensus size: 53
30099895 GGTATTTTGG
* * *** *
30099905 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGTAAAACAA
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGTAAAACAA
* * **
30099958 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGATGGTAAAACGG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGA-GGTAAAACAA
* *
30100012 TAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCG
30100054 GGGGTACTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 36 0.44
54 46 0.56
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (53 bp):
TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGTAAAACAA
Found at i:30111260 original size:40 final size:40
Alignment explanation
Indices: 30111198--30111415 Score: 300
Period size: 40 Copynumber: 5.5 Consensus size: 40
30111188 AAACCAAGTA
* * *
30111198 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
30111237 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
30111277 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
30111317 CCTTCAGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
30111357 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
30111397 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
30111416 TTATCATCCG
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 149 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:30116297 original size:24 final size:25
Alignment explanation
Indices: 30116241--30116311 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
30116231 GAGTCATGAT
* *
30116241 CGGTAAGCTCCTCTTGAGCTGATAAA
1 CGGTAAGCT-CTATTGAGCTGAGAAA
**
30116267 CAATAAGCTCTATTGAGCTG-GAAA
1 CGGTAAGCTCTATTGAGCTGAGAAA
30116291 CGGTAAGCTCTATTGAGCTGA
1 CGGTAAGCTCTATTGAGCTGA
30116312 ATAATAAGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 21 0.55
25 10 0.26
26 7 0.18
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
CGGTAAGCTCTATTGAGCTGAGAAA
Found at i:30116322 original size:22 final size:22
Alignment explanation
Indices: 30116268--30116323 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
30116258 GCTGATAAAC
30116268 AATAAGCTCTATTGAGCTGGAA
1 AATAAGCTCTATTGAGCTGGAA
*
30116290 ACGGTAAGCTCTATTGAGCT-GAA
1 A--ATAAGCTCTATTGAGCTGGAA
30116313 TAATAAGCTCT
1 -AATAAGCTCT
30116324 TTCCAGCTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 9 0.31
23 3 0.10
24 17 0.59
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (22 bp):
AATAAGCTCTATTGAGCTGGAA
Found at i:30116346 original size:23 final size:23
Alignment explanation
Indices: 30116270--30116346 Score: 77
Period size: 22 Copynumber: 3.3 Consensus size: 23
30116260 TGATAAACAA
* *
30116270 TAAGCTCTATTGAGCTGGAAACGG
1 TAAGCTCTATTCAGCT-GAATCGG
* **
30116294 TAAGCTCTATTGAGCTGAAT-AA
1 TAAGCTCTATTCAGCTGAATCGG
30116316 TAAGCTCT-TTCCAGCTGAATCGG
1 TAAGCTCTATT-CAGCTGAATCGG
30116339 TAAGCTCT
1 TAAGCTCT
30116347 GAAACAGTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.04
22 16 0.36
23 11 0.24
24 16 0.36
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (23 bp):
TAAGCTCTATTCAGCTGAATCGG
Found at i:30119590 original size:20 final size:22
Alignment explanation
Indices: 30119549--30119590 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
30119539 CTATTAATAG
*
30119549 TGCTTTCAACTATTCGAAACTT
1 TGCTTTCAACCATTCGAAACTT
30119571 TGCTTT-AACCATTC-AAACTT
1 TGCTTTCAACCATTCGAAACTT
30119591 CACATCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 7 0.37
22 6 0.32
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (22 bp):
TGCTTTCAACCATTCGAAACTT
Found at i:30121677 original size:19 final size:20
Alignment explanation
Indices: 30121653--30121690 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
30121643 GGTACCACCA
30121653 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
30121672 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
30121691 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:30121986 original size:46 final size:45
Alignment explanation
Indices: 30121919--30122086 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 45
30121909 CGCCCCTAAG
*
30121919 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATT-GCATCCATAAA
* *
30121965 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTGCATCCATAAA
* * * *
30122012 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCA-TTGCATCCATAAA
*
30122058 TGAACTCAGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
30122087 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 54 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTGCATCCATAAA
Found at i:30122030 original size:93 final size:93
Alignment explanation
Indices: 30121920--30122090 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
30121910 GCCCCTAAGT
* * *
30121920 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
30121985 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
30122013 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
30122078 CGAGTTCGGATGC
66 CGAGTTCGGATGC
30122091 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:30126729 original size:22 final size:23
Alignment explanation
Indices: 30126701--30126752 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
30126691 TTAGAAATGA
30126701 TAAGCTCAATT-GAGATGAA-CAG
1 TAAGCTC-ATTCGAGATGAATCAG
* *
30126723 TAAGCTCTTTCGAGCTGAATCAG
1 TAAGCTCATTCGAGATGAATCAG
30126746 TAAGCTC
1 TAAGCTC
30126753 CAATAAGCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 14 0.54
23 10 0.38
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (23 bp):
TAAGCTCATTCGAGATGAATCAG
Found at i:30126761 original size:23 final size:23
Alignment explanation
Indices: 30126735--30126785 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
30126725 AGCTCTTTCG
* *
30126735 AGCTGAATCAGTAAGCTCCAATA
1 AGCTGAAACAATAAGCTCCAATA
**
30126758 AGCTGAAACAATAAGCTCTTATA
1 AGCTGAAACAATAAGCTCCAATA
30126781 AGCTG
1 AGCTG
30126786 TGGTGAGTCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.24
Consensus pattern (23 bp):
AGCTGAAACAATAAGCTCCAATA
Found at i:30132046 original size:58 final size:58
Alignment explanation
Indices: 30131977--30132094 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
30131967 ATCACCATCA
*
30131977 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATTCATGATACAATTAAC
1 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC
30132035 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC
1 ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC
30132093 AT
1 AT
30132095 CTTATAAGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.48, C:0.23, G:0.02, T:0.27
Consensus pattern (58 bp):
ATAACATATTTCCTAATACATAACATAACCCAAAAATACCATCCATGATACAATTAAC
Found at i:30134082 original size:9 final size:9
Alignment explanation
Indices: 30134068--30134109 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
30134058 ATAATTTTTG
30134068 ATAAAAATT
1 ATAAAAATT
30134077 ATAAAAATGAT
1 ATAAAAAT--T
*
30134088 TTAAAAA-T
1 ATAAAAATT
30134096 ATAAAAATT
1 ATAAAAATT
30134105 ATAAA
1 ATAAA
30134110 TAAAAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 7 0.25
9 14 0.50
11 7 0.25
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (9 bp):
ATAAAAATT
Found at i:30140878 original size:16 final size:17
Alignment explanation
Indices: 30140847--30140879 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
30140837 AGGGTTTAAT
30140847 TGTACAAAAATTAGATTG
1 TGTACAAAAA-TAGATTG
30140865 TGTACAAAAA-AGATT
1 TGTACAAAAATAGATT
30140880 CAGAAGAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.30
Consensus pattern (17 bp):
TGTACAAAAATAGATTG
Found at i:30142834 original size:93 final size:93
Alignment explanation
Indices: 30142726--30142896 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
30142716 GCCCCTAAGT
* *
30142726 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30142791 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
30142819 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30142884 CGAGTTCGGATGC
66 CGAGTTCGGATGC
30142897 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:30142893 original size:46 final size:46
Alignment explanation
Indices: 30142721--30142893 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
30142711 AACCCGCCCC
* * *
30142721 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
30142767 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
30142815 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
30142860 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
30142894 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.55
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:30150402 original size:93 final size:93
Alignment explanation
Indices: 30150295--30150465 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
30150285 GCCCCTAAGT
* *
30150295 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30150360 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
30150388 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30150453 CGAGTTCGGATGC
66 CGAGTTCGGATGC
30150466 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:30150462 original size:46 final size:46
Alignment explanation
Indices: 30150290--30150462 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
30150280 AACCCGCCCC
* * *
30150290 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
30150336 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
30150384 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
30150429 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
30150463 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:30151026 original size:27 final size:27
Alignment explanation
Indices: 30150995--30151046 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
30150985 CATGCTGATT
30150995 ACTTTTCCCTTCTATGGCAACATCATC
1 ACTTTTCCCTTCTATGGCAACATCATC
30151022 ACTTTTCCCTTCTATGGCAACATCA
1 ACTTTTCCCTTCTATGGCAACATCA
30151047 AATTCTCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.37
Consensus pattern (27 bp):
ACTTTTCCCTTCTATGGCAACATCATC
Found at i:30151059 original size:24 final size:26
Alignment explanation
Indices: 30151000--30151053 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
30150990 TGATTACTTT
* *
30151000 TCCCTTCTATGGCAACATCATCACTTT
1 TCCCTTCTATGGCAACATCA-CAATTC
30151027 TCCCTTCTATGGCAACATCA-AATTC
1 TCCCTTCTATGGCAACATCACAATTC
30151052 TC
1 TC
30151054 TCTCTAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.20
27 20 0.80
ACGTcount: A:0.24, C:0.33, G:0.07, T:0.35
Consensus pattern (26 bp):
TCCCTTCTATGGCAACATCACAATTC
Found at i:30153905 original size:43 final size:42
Alignment explanation
Indices: 30153848--30153967 Score: 118
Period size: 43 Copynumber: 2.8 Consensus size: 42
30153838 AATGCCAACA
*
30153848 TCCCAGAC-GTGGTCTTACATGTAATCACAGATCGATG-CCACTG
1 TCCCAGACAG-GGTCTTACATG-AATCACATATCGATGTCCA-TG
* * *
30153891 TCCCAGACAGGGTCTTACGTGAATTACATATACGATGTCGATG
1 TCCCAGACAGGGTCTTACATGAATCACATAT-CGATGTCCATG
* * *
30153934 TCCTAGACATGGTCTTACACGCAATCACATATCG
1 TCCCAGACAGGGTCTTACATG-AATCACATATCG
30153968 TAAATCCTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
42 8 0.12
43 44 0.69
44 12 0.19
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACATGAATCACATATCGATGTCCATG
Found at i:30170984 original size:158 final size:159
Alignment explanation
Indices: 30170719--30171035 Score: 528
Period size: 158 Copynumber: 2.0 Consensus size: 159
30170709 TGATATGCTA
*
30170719 TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCCCAACCCCAAAT
1 TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCACAACCCCAAAT
* * *
30170784 TAGATTTAAATATTTTGAAACTTGACACTAAAAAAGTGTTTACAATATACCTATGATCTAGTTGT
66 TAGATTTAAATATTTTGAAACTTAACACTAAAAAAGTGTTTACAATATACCTATGATCCAATTGT
*
30170849 GTTAGGTTGATTGCATGATCTTCTGTTGT
131 GTTAGGTTGATTGCATGATCCTCTGTTGT
* *
30170878 TCCTTTTTTGGCTTCTAGTTCTTGTACTCGTACCAGACTGA-GAAAAAAATGCACAGCCCCAAAT
1 TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCACAACCCCAAAT
* * * *
30170942 TAGATTTAAATATTTTGAAACTTAACAGTGAAAAAGTGTTTACGATATACCTGTGATCCAATTGT
66 TAGATTTAAATATTTTGAAACTTAACACTAAAAAAGTGTTTACAATATACCTATGATCCAATTGT
30171007 GTTAGGTTGATTGCATGATCCTCTGTTGT
131 GTTAGGTTGATTGCATGATCCTCTGTTGT
30171036 GACATTTACC
Statistics
Matches: 147, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
158 107 0.73
159 40 0.27
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (159 bp):
TCCTTTTTTGGCTTCTAGTTATTGTACTCGTACCAGACTGAGGAAAAAAATGCACAACCCCAAAT
TAGATTTAAATATTTTGAAACTTAACACTAAAAAAGTGTTTACAATATACCTATGATCCAATTGT
GTTAGGTTGATTGCATGATCCTCTGTTGT
Found at i:30174680 original size:9 final size:9
Alignment explanation
Indices: 30174664--30174706 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
30174654 CATTTAAAAT
30174664 CCTCACCAC
1 CCTCACCAC
*
30174673 CTTCACCAC
1 CCTCACCAC
30174682 CCTCA--A-
1 CCTCACCAC
30174688 CCTCACCAC
1 CCTCACCAC
30174697 CCTCACCAC
1 CCTCACCAC
30174706 C
1 C
30174707 TTTATTGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
6 5 0.17
7 1 0.03
8 1 0.03
9 22 0.76
ACGTcount: A:0.23, C:0.63, G:0.00, T:0.14
Consensus pattern (9 bp):
CCTCACCAC
Found at i:30174782 original size:90 final size:90
Alignment explanation
Indices: 30174607--30174790 Score: 199
Period size: 90 Copynumber: 2.0 Consensus size: 90
30174597 CCGCATCAAA
* *
30174607 CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCTCATTTAAACATTTAAAATCCTCACCA
1 CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCCCATTTAAACATTCAAAATCCTCACCA
** *
30174672 CCTTCACCACCCTCAACCTCACCAC
66 CCTTCACCACCAACAACCTCAACAC
* * * * * * *
30174697 CCTCACCACCTTTATTGCTAGCAACCTTAACGCCCTCCCCATTTAAACCTTCAAAA-CTCTCACC
1 CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCCCATTTAAACATTCAAAATC-CTCACC
* *** *
30174761 ACCTTTAGTGCCAACACCCTCAACAC
65 ACCTTCACCACCAACAACCTCAACAC
30174787 CCTC
1 CCTC
30174791 TCCATTTAAC
Statistics
Matches: 76, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 1 0.01
90 75 0.99
ACGTcount: A:0.29, C:0.45, G:0.03, T:0.23
Consensus pattern (90 bp):
CCTCACCACCTTTACTACCAACAACCTCAACACCCTCCCCATTTAAACATTCAAAATCCTCACCA
CCTTCACCACCAACAACCTCAACAC
Found at i:30174790 original size:57 final size:56
Alignment explanation
Indices: 30174697--30174818 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 56
30174687 ACCTCACCAC
* * * * *
30174697 CCTCACCACCTTTATTGCTAGCAACCTTAACGCCCTCCCCATTTAAACC-TTCAAAA
1 CCTCACCACCTTTAGTGCCAACAACCTCAACACCCTCCCCATTT-AACCTTTCAAAA
* *
30174753 CTCTCACCACCTTTAGTGCCAACACCCTCAACACCCTCTCCATTTAACCTTTCAAAA
1 C-CTCACCACCTTTAGTGCCAACAACCTCAACACCCTCCCCATTTAACCTTTCAAAA
30174810 CCTTCACCA
1 CC-TCACCA
30174819 TATTTACCAC
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
56 6 0.11
57 50 0.89
ACGTcount: A:0.28, C:0.42, G:0.04, T:0.26
Consensus pattern (56 bp):
CCTCACCACCTTTAGTGCCAACAACCTCAACACCCTCCCCATTTAACCTTTCAAAA
Found at i:30175967 original size:14 final size:14
Alignment explanation
Indices: 30175944--30175999 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
30175934 TTTCAAAAAT
*
30175944 AAAAAACCCTAAAC
1 AAAAATCCCTAAAC
30175958 AAAAATCCCTAATATC
1 AAAAATCCCTAA-A-C
*
30175974 AAAAA-CCCTAACC
1 AAAAATCCCTAAAC
*
30175987 CAAAATCCCTAAA
1 AAAAATCCCTAAA
30176000 TTTGATAACC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
13 5 0.14
14 17 0.49
15 7 0.20
16 6 0.17
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAATCCCTAAAC
Found at i:30181416 original size:17 final size:17
Alignment explanation
Indices: 30181394--30181443 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
30181384 CATTGATATG
*
30181394 CATATAAAATATATACA
1 CATATAAAATATACACA
*
30181411 CATATAATATATACACA
1 CATATAAAATATACACA
30181428 CAATTATAATAATATA
1 C-A-TATAA-AATATA
30181444 AAAATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 16 0.59
18 1 0.04
19 5 0.19
20 5 0.19
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (17 bp):
CATATAAAATATACACA
Found at i:30183772 original size:17 final size:17
Alignment explanation
Indices: 30183752--30183793 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
30183742 AAATGTTAAT
*
30183752 TAAAAATATCAAAATAA
1 TAAAAAAATCAAAATAA
*
30183769 TAAAAAAATTAAAAT-A
1 TAAAAAAATCAAAATAA
*
30183785 TCAAAAAAT
1 TAAAAAAAT
30183794 AAATCATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAAAAAATCAAAATAA
Found at i:30183788 original size:25 final size:25
Alignment explanation
Indices: 30183749--30183796 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
30183739 ATTAAATGTT
30183749 AATTAAAAATATCAAAATAATAAAAA
1 AATTAAAAATATCAAAA-AATAAAAA
30183775 AATT-AAAATATCAAAAAATAAA
1 AATTAAAAATATCAAAAAATAAA
30183797 TCATTATACT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.27
25 12 0.55
26 4 0.18
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (25 bp):
AATTAAAAATATCAAAAAATAAAAA
Found at i:30184506 original size:26 final size:26
Alignment explanation
Indices: 30184472--30184525 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
30184462 TTTTTTGTTA
30184472 AATTTTAAATTTAACCTCTATGCTTT
1 AATTTTAAATTTAACCTCTATGCTTT
*
30184498 AATTTTAAATTTAACCTCTATGTTTT
1 AATTTTAAATTTAACCTCTATGCTTT
30184524 AA
1 AA
30184526 CCTCTATGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.13, G:0.04, T:0.50
Consensus pattern (26 bp):
AATTTTAAATTTAACCTCTATGCTTT
Found at i:30184526 original size:14 final size:14
Alignment explanation
Indices: 30184507--30184533 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30184497 TAATTTTAAA
30184507 TTTAACCTCTATGT
1 TTTAACCTCTATGT
30184521 TTTAACCTCTATG
1 TTTAACCTCTATG
30184534 ACTAATTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTAACCTCTATGT
Found at i:30185544 original size:29 final size:30
Alignment explanation
Indices: 30185507--30185569 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
30185497 GGATTAGATT
* * *
30185507 AAATTAATCCCTCTATTATT-AAATGAATC
1 AAATTAATCCATCTACTATTAAAAAGAATC
*
30185536 AAATTAATCCATGTACTATTAAAAAGAATC
1 AAATTAATCCATCTACTATTAAAAAGAATC
30185566 AAAT
1 AAAT
30185570 AAGATCAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33
Consensus pattern (30 bp):
AAATTAATCCATCTACTATTAAAAAGAATC
Found at i:30185726 original size:25 final size:25
Alignment explanation
Indices: 30185692--30185745 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
30185682 AACTTTCAAA
30185692 ACATAACACTATTAAATAATAAATG
1 ACATAACACTATTAAATAATAAATG
30185717 ACATAACACTATTAAATAATAAATG
1 ACATAACACTATTAAATAATAAATG
30185742 ACAT
1 ACAT
30185746 TTTTTAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.56, C:0.13, G:0.04, T:0.28
Consensus pattern (25 bp):
ACATAACACTATTAAATAATAAATG
Found at i:30195666 original size:60 final size:60
Alignment explanation
Indices: 30195597--30195715 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
30195587 TATGTATGTG
30195597 TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGCT
1 TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGCT
* *
30195657 TATGAAAGTGCATACTCTTATTTTTTATTAATTATATACAAGATTACTAAGCTTTATGC
1 TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGC
30195716 GTATTCCCTC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (60 bp):
TATGAAAGTGCATACTCTTATTGTTTATTAATTACATACAAGATTACTAAGCTTTATGCT
Found at i:30203295 original size:33 final size:34
Alignment explanation
Indices: 30203228--30203300 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 34
30203218 CTAAGCCTAG
* * *
30203228 ATCAGTAAAGGTCTGGGCCTGAGGCTTATTCAGT
1 ATCAGTAAAGGTCTGGGCCTGAGCCCTATACAGT
* *
30203262 ATCAGTACA-GTCTGGGCCTTAGCCCTATACAGT
1 ATCAGTAAAGGTCTGGGCCTGAGCCCTATACAGT
*
30203295 AGCAGT
1 ATCAGT
30203301 GTGGGCCTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 25 0.76
34 8 0.24
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (34 bp):
ATCAGTAAAGGTCTGGGCCTGAGCCCTATACAGT
Found at i:30203328 original size:28 final size:28
Alignment explanation
Indices: 30203269--30203328 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
30203259 AGTATCAGTA
* * *
30203269 CAGTCTGGGCCTTAGCCCTATACAGTAG
1 CAGTCTGGGCCTAAGCCCAATACAGCAG
* * *
30203297 CAGTGTGGGCCTAAGCCCAATGCAGCAT
1 CAGTCTGGGCCTAAGCCCAATACAGCAG
30203325 CAGT
1 CAGT
30203329 ACAGTGTAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (28 bp):
CAGTCTGGGCCTAAGCCCAATACAGCAG
Found at i:30203719 original size:27 final size:27
Alignment explanation
Indices: 30203673--30203828 Score: 190
Period size: 27 Copynumber: 5.8 Consensus size: 27
30203663 TACGGAACAT
*
30203673 AAGGGCATTTC-GTCATTTTACCCTAC
1 AAGGGCATTACGGTCATTTTACCCTAC
30203699 AAGGGCATTACGGTCATTTTACCCTAC
1 AAGGGCATTACGGTCATTTTACCCTAC
* * * *
30203726 AGGGGCATTACGATCATTTTAACCTAT
1 AAGGGCATTACGGTCATTTTACCCTAC
* *
30203753 AGGGGCATTACGGTCATTTTACCTTAC
1 AAGGGCATTACGGTCATTTTACCCTAC
*
30203780 AGGGGCATTACGGTCATTTTACCCTA-
1 AAGGGCATTACGGTCATTTTACCCTAC
* * *
30203806 TAGGGATATTATGGTCATTTTAC
1 AAGGG-CATTACGGTCATTTTAC
30203829 AAATCGGGGG
Statistics
Matches: 114, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 13 0.11
27 101 0.89
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
AAGGGCATTACGGTCATTTTACCCTAC
Found at i:30203824 original size:81 final size:80
Alignment explanation
Indices: 30203675--30203827 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 80
30203665 CGGAACATAA
* *
30203675 GGGCATTTCGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGAT
1 GGGCATTACGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGAT
30203740 CATTTTAACCTATAG
66 CATTTTAACCTATAG
* * * * * *
30203755 GGGCATTACGGTCATTTTACCTTACAGGGGCATTACGGTCATTTTACCCTATAGGGATATTATGG
1 GGGCATTAC-GTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGA
30203820 TCATTTTA
65 TCATTTTA
30203828 CAAATCGGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 8 0.12
81 56 0.88
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (80 bp):
GGGCATTACGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGAT
CATTTTAACCTATAG
Found at i:30203842 original size:27 final size:27
Alignment explanation
Indices: 30203822--30203918 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 27
30203812 TATTATGGTC
** *
30203822 ATTTTACAAATCGGGGGTATTTCAATA
1 ATTTTACAAATAAGGGGTATTTCAGTA
*
30203849 ATTTTACAAATAAGGGGTATTTTAGTA
1 ATTTTACAAATAAGGGGTATTTCAGTA
* * *
30203876 ATTTTACAAATTAGGGATATTTCGGTA
1 ATTTTACAAATAAGGGGTATTTCAGTA
*
30203903 ATTTTACAAATGAGGG
1 ATTTTACAAATAAGGG
30203919 TCTTAACGAC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (27 bp):
ATTTTACAAATAAGGGGTATTTCAGTA
Found at i:30203853 original size:81 final size:81
Alignment explanation
Indices: 30203687--30203855 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 81
30203677 GCATTTCGTC
* **
30203687 ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTAACCTA
1 ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGATCATTTTAACAAA
** *
30203752 TAGGGGCATTACGGTC
66 TAGGGGCATTACAATA
* * * * * *
30203768 ATTTTACCTTACAGGGGCATTACGGTCATTTTACCCTATAGGGATATTATGGTCATTTT-ACAAA
1 ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGATCATTTTAACAAA
* * *
30203832 TCGGGGGTATTTCAATA
66 T-AGGGGCATTACAATA
30203849 ATTTTAC
1 ATTTTAC
30203856 AAATAAGGGG
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 4 0.06
81 68 0.94
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
ATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGATCATTTTAACAAA
TAGGGGCATTACAATA
Found at i:30207967 original size:33 final size:33
Alignment explanation
Indices: 30207910--30207972 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
30207900 ATCAGTAACG
* * *
30207910 GTCTGGGCCTGAGCTCTATTCAGTATCAGTATA
1 GTCTGGGCCTGAGCCCTATACAGTAGCAGTATA
30207943 GTCTGGGCCAT-AGCCCTATACAGTAGCAGT
1 GTCTGGGCC-TGAGCCCTATACAGTAGCAGT
30207973 GCGGGCCTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (33 bp):
GTCTGGGCCTGAGCCCTATACAGTAGCAGTATA
Found at i:30208221 original size:27 final size:27
Alignment explanation
Indices: 30208163--30208236 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
30208153 GAAACAGTAG
*
30208163 ATGTGGCAAAGCCACCAGT-ATCAATA
1 ATGTGGCATAGCCACCAGTAATCAATA
*
30208189 ATTGTGGCATAGCCACCAGTAAT-AGTGA
1 A-TGTGGCATAGCCACCAGTAATCAAT-A
* *
30208217 ATGTGACATAGTCACCAGTA
1 ATGTGGCATAGCCACCAGTA
30208237 CAGAACTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.02
27 36 0.88
28 4 0.10
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
ATGTGGCATAGCCACCAGTAATCAATA
Found at i:30208411 original size:27 final size:27
Alignment explanation
Indices: 30208365--30208519 Score: 188
Period size: 27 Copynumber: 5.8 Consensus size: 27
30208355 TACATAACAT
*
30208365 AAGGGCATTTCG-TCATTTTACCCTAC
1 AAGGGCATTACGATCATTTTACCCTAC
*
30208391 AAGGGCATTACGGTCATTTTACCCTAC
1 AAGGGCATTACGATCATTTTACCCTAC
*
30208418 AAGGGCATTACGATCATTTTAACCTAC
1 AAGGGCATTACGATCATTTTACCCTAC
* * * *
30208445 AGGGGCATTATGGTCTTTTTACCCTAC
1 AAGGGCATTACGATCATTTTACCCTAC
** * *
30208472 TGGGGCATTACGATTATTTTACCTTAC
1 AAGGGCATTACGATCATTTTACCCTAC
*
30208499 -AGGGTATTACGATCATTTTAC
1 AAGGGCATTACGATCATTTTAC
30208520 AAACCGAGGG
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 29 0.26
27 82 0.74
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
AAGGGCATTACGATCATTTTACCCTAC
Found at i:30208543 original size:27 final size:26
Alignment explanation
Indices: 30208513--30208608 Score: 102
Period size: 26 Copynumber: 3.7 Consensus size: 26
30208503 TATTACGATC
*
30208513 ATTTTACAAACCGAGGGTATTTTAGTA
1 ATTTTACAAACCG-GGGTATTTTGGTA
* * *
30208540 ATTTTGCAAATCGGGATATTTTGGTA
1 ATTTTACAAACCGGGGTATTTTGGTA
* * * *
30208566 ATTTTGCAAATCTGGGTATTTGGGTA
1 ATTTTACAAACCGGGGTATTTTGGTA
*
30208592 ATTTTACAAACTGGGGT
1 ATTTTACAAACCGGGGT
30208609 CTTAATGACC
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 47 0.81
27 11 0.19
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTTACAAACCGGGGTATTTTGGTA
Found at i:30208566 original size:26 final size:26
Alignment explanation
Indices: 30208527--30208606 Score: 110
Period size: 26 Copynumber: 3.1 Consensus size: 26
30208517 TACAAACCGA
*
30208527 GGGTATTTTAGTAATTTTGCAAATC-
1 GGGTATTTTGGTAATTTTGCAAATCT
30208552 GGGATATTTTGGTAATTTTGCAAATCT
1 GGG-TATTTTGGTAATTTTGCAAATCT
* *
30208579 GGGTATTTGGGTAATTTTACAAA-CT
1 GGGTATTTTGGTAATTTTGCAAATCT
30208604 GGG
1 GGG
30208607 GTCTTAATGA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
25 8 0.16
26 39 0.78
27 3 0.06
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTGCAAATCT
Found at i:30215360 original size:35 final size:35
Alignment explanation
Indices: 30215314--30215384 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
30215304 ACCTTGAGAT
30215314 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA
1 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA
30215349 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA
1 AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA
30215384 A
1 A
30215385 CCAGAGAAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.44, C:0.14, G:0.25, T:0.17
Consensus pattern (35 bp):
AGAACGAACCTTTCGATAGTGAAGAAGATAAGCGA
Found at i:30215948 original size:21 final size:21
Alignment explanation
Indices: 30215922--30215963 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
30215912 GAACGATACA
30215922 AAGAATTATTACAGAAATGCC
1 AAGAATTATTACAGAAATGCC
30215943 AAGAATTATTACAGAAATGCC
1 AAGAATTATTACAGAAATGCC
30215964 TTCACCATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24
Consensus pattern (21 bp):
AAGAATTATTACAGAAATGCC
Found at i:30221281 original size:22 final size:24
Alignment explanation
Indices: 30221236--30221281 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
30221226 TAATCTTTAA
30221236 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
30221260 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
30221282 AGCATAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:30225810 original size:47 final size:46
Alignment explanation
Indices: 30225660--30225918 Score: 208
Period size: 47 Copynumber: 5.5 Consensus size: 46
30225650 GACGATGCCG
* *
30225660 TGTCCCAGACATGGTCTTACACTGGCTCTCATACATG-CGTGCTGATGCA
1 TGTCCCAGACAT-GTCTTACACTGGCTATCA-AC-TGTCG-GCCGATGCA
* * * ** *
30225709 TGTCCCAGACATGTCTTTCACTAGC-A-CAACTCTTAGCCGATGCG
1 TGTCCCAGACATGTCTTACACTGGCTATCAACTGTCGGCCGATGCA
* *
30225753 TGTCCTAGACATGTCTTACACTGGCTATC-ACTGTCGAGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGGCTATCAACTGTC--GGCCGATGCA
** * * *
30225800 TGTCCCAGACATGTCTTACTTTAGC-ACTCATCTCT-GTGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTGGCTA-TCAACTGTCG-GCCGATG-CA
* * *
30225847 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTC-GCCGAAGCA
1 TGTCCCAGACAT-GTCTTACACTGGCTATCA-ACTGTCGGCCGATGCA
30225894 TGTCCCAGACATGTCTTACACTGGC
1 TGTCCCAGACATGTCTTACACTGGC
30225919 ACACAACACA
Statistics
Matches: 166, Mismatches: 31, Indels: 29
0.73 0.14 0.13
Matches are distributed among these distances:
44 30 0.18
45 8 0.05
46 23 0.14
47 58 0.35
48 33 0.20
49 14 0.08
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTGGCTATCAACTGTCGGCCGATGCA
Found at i:30228103 original size:16 final size:16
Alignment explanation
Indices: 30228082--30228115 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
30228072 GATGAACATT
30228082 CTTATGAATATTTATG
1 CTTATGAATATTTATG
30228098 CTTATGAATATTTATG
1 CTTATGAATATTTATG
30228114 CT
1 CT
30228116 ATCGAAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (16 bp):
CTTATGAATATTTATG
Found at i:30243496 original size:44 final size:44
Alignment explanation
Indices: 30243423--30243510 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
30243413 TGCCACTGCC
*
30243423 ACATAACTACTAAAGTATTGTTTTGCCTATGTGGCGTACAATCT
1 ACATAACTACTAAAGTATTATTTTGCCTATGTGGCGTACAATCT
*
30243467 ACATAACTACTAAAGTATTATTTTTCCTATGTGGCGTACAATCT
1 ACATAACTACTAAAGTATTATTTTGCCTATGTGGCGTACAATCT
30243511 TTACTTATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (44 bp):
ACATAACTACTAAAGTATTATTTTGCCTATGTGGCGTACAATCT
Found at i:30248363 original size:28 final size:28
Alignment explanation
Indices: 30248271--30248419 Score: 266
Period size: 28 Copynumber: 5.4 Consensus size: 28
30248261 ATATTAAGTC
* *
30248271 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
30248298 CGCACACTTAGTGCTACATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
30248325 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
30248353 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
30248381 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
30248409 CGCACACTTAG
1 CGCACACTTAG
30248420 AGCTGTACAA
Statistics
Matches: 119, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 50 0.42
28 69 0.58
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAGCT
Found at i:30256507 original size:28 final size:28
Alignment explanation
Indices: 30256444--30256597 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
30256434 ATATTAAGTC
* *
30256444 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
30256471 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
30256499 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
30256527 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
30256555 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
30256583 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
30256598 GTACAATTTA
Statistics
Matches: 123, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 101 0.82
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:30260213 original size:48 final size:48
Alignment explanation
Indices: 30260142--30260473 Score: 380
Period size: 48 Copynumber: 6.9 Consensus size: 48
30260132 TGATACTAGG
*
30260142 GATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT
* * * *
30260190 GATATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT
* * *
30260238 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT
* ** * *
30260286 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATTCCATCGACATT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT
* * * * * * *
30260334 GATAGGAGAACTAGTCTAAGACCATGTCTAGGACATGGCATCGGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT
* * * *
30260382 GACATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGAAC-T
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CCTT
* *
30260430 GATATATGAGAGCCT-GTGTAAGACCATGTCTGGGACATGGCATC
1 G--ATATGTGAG-CTAGTGTAAGACCATGTTTGGGACATGGCATC
30260474 AGCATCTTAC
Statistics
Matches: 234, Mismatches: 46, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
48 198 0.85
49 1 0.00
50 33 0.14
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTT
Found at i:30260306 original size:96 final size:96
Alignment explanation
Indices: 30260142--30260473 Score: 477
Period size: 96 Copynumber: 3.4 Consensus size: 96
30260132 TGATACTAGG
* * * * * *
30260142 GATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGATATGTGAGCCAATGT
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT
30260207 AAGACCATGTTTGGAACATGGCATCGGCATT
66 AAGACCATGTTTGGAACATGGCATCGGCATT
30260238 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT
** *
30260303 AAGACCATGTTTGGAACATTCCATCGACATT
66 AAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * *
30260334 GATAGGAGAACTAGTCTAAGACCATGTCTAGGACATGGCATCGGCCTCGACATGTGGGCTAGTGT
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT
* *
30260399 AAGACCATGTTTGGAACATGGCATCGGAACT
66 AAGACCATGTTTGGAACATGGCATCGGCATT
30260430 GATATATGAGAGCCT-GTGTAAGACCATGTCTGGGACATGGCATC
1 G--ATATGAGAG-CTAGTGTAAGACCATGTCTGGGACATGGCATC
30260474 AGCATCTTAC
Statistics
Matches: 209, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
96 173 0.83
98 34 0.16
99 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (96 bp):
GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGT
AAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:30274179 original size:48 final size:47
Alignment explanation
Indices: 30274032--30274398 Score: 337
Period size: 48 Copynumber: 7.7 Consensus size: 47
30274022 TGATACTAGG
* * * * *
30274032 GATATGTGAGCCAATGTAAGACTATGTCTGGAACATGGCATCAGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCAGCCTC
* * * * *
30274080 GATATGTGAGCCAG-CTAAGACCATGTTTGGAACATGGCATCAGCGTT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCAGCCTC
*
30274127 GATATGAGAGCTAGTGTATAG-CCATGATTAGGACATGGCATC-GACCTC
1 GATATGAGAGCTAGTGTA-AGACCATG-TTTGGACATGGCATCAG-CCTC
* * * * *
30274175 GATATGTGAGCCAATGTAAGACCATGTTTGGAGCATGGCATCAGCATT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGA-CATGGCATCAGCCTC
* * * * *
30274223 GATATGAGAGCTAGTATAAGACCCTATTTGGGACATGGTATCGGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTTT-GGACATGGCATCAGCCTC
* * *
30274271 GATAT-ATGAGCCAGTGTAAGACCATGTTTGGAGCATGGCATCAGCATT
1 GATATGA-GAGCTAGTGTAAGACCATGTTTGGA-CATGGCATCAGCCTC
* * * *
30274319 GATAGGAGAGTTAGTGTAAGGCGATGTTTGGGACATGGCATCAGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTTT-GGACATGGCATCAGCCTC
* * *
30274367 GACATGTGGGCTAGTGTAAGACCATGTTTGGA
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGA
30274399 ATATGGAATC
Statistics
Matches: 257, Mismatches: 50, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
47 55 0.21
48 188 0.73
49 14 0.05
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
GATATGAGAGCTAGTGTAAGACCATGTTTGGACATGGCATCAGCCTC
Found at i:30274337 original size:144 final size:145
Alignment explanation
Indices: 30274046--30274463 Score: 343
Period size: 144 Copynumber: 2.9 Consensus size: 145
30274036 TGTGAGCCAA
* * * * * * * * *
30274046 TGTAAGACTATGTCTGGAACATGGCATCAGCCTCGATATGTGAGCCAG-CTAAGACCATGTTTGG
1 TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTGG
* ** * *
30274110 AACATGGCATC-AGCGTTGATAT-GAGAGCTAGTGTATAG-CCATGAT-TAGGACATGGCATC-G
66 AACATGGAATCGA-CACTGATATATAGAGCCAGTGTA-AGACCATG-TCTAGGACATGGCATCAG
* * * * ** *
30274170 ACCTCGATATGTGAGCCAA
128 -CATTGATAGGAGAGTTAG
* * *
30274189 TGTAAGACCATGTTT-GGAGCATGGCATCAGCATTGATATGAGAGCTAGTATAAGACCCTATTTG
1 TGTAAGACCATGTTTGGGA-CATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTG
* * * *
30274253 GGACATGGTATCGGC-CTCGATATAT-GAGCCAGTGTAAGACCATGT-TTGGAGCATGGCATCAG
65 GAACATGGAATCGACACT-GATATATAGAGCCAGTGTAAGACCATGTCTAGGA-CATGGCATCAG
30274315 CATTGATAGGAGAGTTAG
128 CATTGATAGGAGAGTTAG
* * * * * * *
30274333 TGTAAGGCGATGTTTGGGACATGGCATCAGCCTCGACATGTGGGCTAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTGG
* * * *
30274398 AATATGGAATCGACACTGATATATGAGAGCCAGTGTGAGACTATGTCTAGGACATGGCATCGGCA
66 AACATGGAATCGACACTGATATAT-AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCA
30274463 T
130 T
30274464 CTTACCCTTT
Statistics
Matches: 220, Mismatches: 42, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
142 2 0.01
143 46 0.21
144 131 0.60
145 6 0.03
146 31 0.14
147 4 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (145 bp):
TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGAGAGCTAGTATAAGACCATATTTGG
AACATGGAATCGACACTGATATATAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCAT
TGATAGGAGAGTTAG
Found at i:30274418 original size:96 final size:96
Alignment explanation
Indices: 30274032--30274458 Score: 475
Period size: 96 Copynumber: 4.4 Consensus size: 96
30274022 TGATACTAGG
* * * * * * *
30274032 GATATGTGAGCCAATGTAAGACTATGTCTGGAACATGGCATCAGCCTCGATATGTGAGCCAG-CT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT
*
30274096 AAGACCATGTTTGGAACATGGCATCAGCGTT
66 AAGACCATGTTTGGAACATGGCATCAGCATT
* * *
30274127 GATATGAGAGCTAGTGTATAG-CCATGATTAGGACATGGCATC-GACCTCGATATGTGAGCCAAT
1 GATATGAGAGCTAGTGTA-AGACCATGTTTGGGACATGGCATCAG-CCTCGATATGTGAGCCAGT
*
30274190 GTAAGACCATGTTTGGAGCATGGCATCAGCATT
64 GTAAGACCATGTTTGGAACATGGCATCAGCATT
* * * * * *
30274223 GATATGAGAGCTAGTATAAGACCCTATTTGGGACATGGTATCGGCCTCGATATATGAGCCAGTGT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT
*
30274288 AAGACCATGTTTGGAGCATGGCATCAGCATT
66 AAGACCATGTTTGGAACATGGCATCAGCATT
* * * * * * *
30274319 GATAGGAGAGTTAGTGTAAGGCGATGTTTGGGACATGGCATCAGCCTCGACATGTGGGCTAGTGT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT
* * *
30274384 AAGACCATGTTTGGAATATGGAATC-GACACT
66 AAGACCATGTTTGGAACATGGCATCAG-CATT
* * * * *
30274415 GATATATGAGAGCCAGTGTGAGACTATGTCTAGGACATGGCATC
1 G--ATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC
30274459 GGCATCTTAC
Statistics
Matches: 279, Mismatches: 45, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
94 1 0.00
95 51 0.18
96 193 0.69
97 1 0.00
98 33 0.12
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (96 bp):
GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCAGCATT
Found at i:30276576 original size:36 final size:36
Alignment explanation
Indices: 30276525--30276596 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
30276515 ACTCAAAGGA
*
30276525 TAGATCATTTGAAGATGTTTGAAAATTATCAACCTC
1 TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC
30276561 TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC
1 TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC
30276597 CAAAATCCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (36 bp):
TAGATCATTTAAAGATGTTTGAAAATTATCAACCTC
Found at i:30277835 original size:42 final size:41
Alignment explanation
Indices: 30277754--30277870 Score: 117
Period size: 42 Copynumber: 2.8 Consensus size: 41
30277744 CCTAAAACAT
* * ** * *
30277754 GAGCTTAAACTATTCAGCCTAAATGATGATGCTTCTAAGCAC
1 GAGCTTAAACTATTCATCCAAAAAAATAAT-ATTCTAAGCAC
*
30277796 GAGCTTAAACTATTCATCCAAAAAAATAATATTCTTAAGCAT
1 GAGCTTAAACTATTCATCCAAAAAAATAATATTC-TAAGCAC
***
30277838 GAGCTTAAACTGCACATCCAAAAAAATATATAT
1 GAGCTTAAACTATTCATCCAAAAAAATA-ATAT
30277871 CGAACTATGT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
41 3 0.05
42 56 0.89
43 4 0.06
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (41 bp):
GAGCTTAAACTATTCATCCAAAAAAATAATATTCTAAGCAC
Found at i:30278479 original size:292 final size:292
Alignment explanation
Indices: 30277949--30278541 Score: 1060
Period size: 292 Copynumber: 2.0 Consensus size: 292
30277939 GCAATTAGAT
* *
30277949 CTGCTATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATTGTAAA
1 CTGCCATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA
* *
30278014 ATCAAGCAATTTAGTAATAAGTTATGTTTTTTACATTCTAAATTATCAAAGTATACTTTTTAGTA
66 ATCAAGCAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA
30278079 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA
131 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA
* *
30278144 TGCAACTTTTGGATGAAACTGTTGCCGATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA
196 TGCAACTTTTGGATGAAACTATTGCCAATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA
30278209 GACAGATGCAAGAACAAACACCTGGGTCAAAA
261 GACAGATGCAAGAACAAACACCTGGGTCAAAA
*
30278241 CTGCCATGAGATATCATGTTATCTTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA
1 CTGCCATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA
*
30278306 ATCAAGTAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA
66 ATCAAGCAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA
*
30278371 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTGGGATGGATCGGGAGCTAAAGA
131 GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA
* * * *
30278436 TGCAACTTTTGGATGAAACTATTGCTAATGTCACAAGATTAAGCCATGAAAGTTTCAACATTGAA
196 TGCAACTTTTGGATGAAACTATTGCCAATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA
*
30278501 GACCGATGCAAGAACAAACACCTGGGTCAAAA
261 GACAGATGCAAGAACAAACACCTGGGTCAAAA
30278533 CTGCCATGA
1 CTGCCATGA
30278542 ATGTTGCAAC
Statistics
Matches: 287, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
292 287 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (292 bp):
CTGCCATGAGATATCATGTTATATTTTATCCCTTTTCACATAATTTTAGCTTCTTTAATAGTAAA
ATCAAGCAATTTAGTAATAAGTTAAGTTTATTACATTCTAAATTATCAAAGTATACTTTTTAGTA
GTTTAATGGTATTTTATATCTAAATAAGGTTATGTGGTTATGTCGGATGGATCGGGAGCTAAAGA
TGCAACTTTTGGATGAAACTATTGCCAATGTCACAACATTAAGCAATGAAAGTTGCAACATTGAA
GACAGATGCAAGAACAAACACCTGGGTCAAAA
Found at i:30283446 original size:23 final size:23
Alignment explanation
Indices: 30283420--30283464 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
30283410 TAGATTTTTC
30283420 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
30283443 CTAAATATTATTACTAAATAAT
1 CTAAATATTATCACTAAATAAT
30283465 ACAAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:30283471 original size:23 final size:23
Alignment explanation
Indices: 30283422--30283471 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
30283412 GATTTTTCCT
* *
30283422 AAATATTATCACTAAATAATTCT
1 AAATATTATCACTAAATAATACA
*
30283445 AAATATTATTACTAAATAATACA
1 AAATATTATCACTAAATAATACA
30283468 AAAT
1 AAAT
30283472 TTAAAATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (23 bp):
AAATATTATCACTAAATAATACA
Found at i:30284936 original size:19 final size:19
Alignment explanation
Indices: 30284912--30284951 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
30284902 TTTCAAATGA
*
30284912 CCAAATTTCCTGTAATAGC
1 CCAAATTTCCTATAATAGC
30284931 CCAAATTTCCTATAATAGC
1 CCAAATTTCCTATAATAGC
30284950 CC
1 CC
30284952 GTTTTTTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (19 bp):
CCAAATTTCCTATAATAGC
Found at i:30295683 original size:125 final size:125
Alignment explanation
Indices: 30295461--30295705 Score: 427
Period size: 125 Copynumber: 2.0 Consensus size: 125
30295451 AGTCATCATT
* *
30295461 GTTCGGGACTGTTTCAGCATGTGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT
1 GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT
* *
30295526 GAATCGGGATTATTCTTATCATTGAAAATGATAGACTAATCTGAATTATTATTAACAAAA
66 GAATCGGGATTATTCTTATCATTGAAAATGATAAACTAATCTGAAATATTATTAACAAAA
30295586 GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT
1 GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT
* * *
30295651 GAATTGGGATTATTCTTATCATTGAAAATGATAAATTGATCTGAAATATTATTAA
66 GAATCGGGATTATTCTTATCATTGAAAATGATAAACTAATCTGAAATATTATTAA
30295706 ATGCTTGAAG
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
125 113 1.00
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (125 bp):
GTTCGGGACTGGTTCAGCATGAGTTGATATCTGAGTAGTAATGAAATAGAATTTTGATGAACTTT
GAATCGGGATTATTCTTATCATTGAAAATGATAAACTAATCTGAAATATTATTAACAAAA
Found at i:30302808 original size:43 final size:43
Alignment explanation
Indices: 30302745--30302913 Score: 132
Period size: 43 Copynumber: 3.9 Consensus size: 43
30302735 ATAGGATTTC
* * * *
30302745 CGATATGTGCTCTCGCGTAAGACCACGTCTGGGACGTTGCCAT
1 CGATATGTGATTTCGAGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
30302788 CGATATGTGATTTCGAGTAAGAACATGTCTGGGACATCGGCAT
1 CGATATGTGATTTCGAGTAAGACCACGTCTGGGACGTTGGCAT
* *
30302831 CG-TAATTGTGA-TTCGTGTAAGACC-CTGTCTAGGACAG-TGGCAT
1 CGAT-A-TGTGATTTCGAGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* * * *
30302874 CGACATGTGATTAC-ATGTAAGACCATGTGTGGGACGTTGG
1 CGATATGTGATTTCGA-GTAAGACCACGTCTGGGACGTTGG
30302914 AATTGTACGA
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
42 7 0.07
43 85 0.88
44 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (43 bp):
CGATATGTGATTTCGAGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:30314463 original size:21 final size:21
Alignment explanation
Indices: 30314419--30314464 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
30314409 AAACTTGTAT
* *
30314419 ATCTACCATTAAACCTTCATA
1 ATCTACCATTAAACATTCAAA
* *
30314440 ATCTATCATTAAACATTTAAA
1 ATCTACCATTAAACATTCAAA
30314461 ATCT
1 ATCT
30314465 TAAGCATTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (21 bp):
ATCTACCATTAAACATTCAAA
Found at i:30319790 original size:21 final size:20
Alignment explanation
Indices: 30319764--30319813 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
30319754 ACGGCTTGCC
*
30319764 CACACGGGTGAGTCCCATGTT
1 CACACGGGCGAG-CCCATGTT
*
30319785 CACACGAGCGAGCCCATGTT
1 CACACGGGCGAGCCCATGTT
30319805 CACACGGGC
1 CACACGGGC
30319814 CTGTGACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16
Consensus pattern (20 bp):
CACACGGGCGAGCCCATGTT
Found at i:30327898 original size:43 final size:43
Alignment explanation
Indices: 30327851--30328092 Score: 231
Period size: 43 Copynumber: 5.6 Consensus size: 43
30327841 CCAATGTCCT
* * *
30327851 AGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCC
1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAGCCC
* *
30327894 AGACGTGGTTTTACATGTAATCACATATCGATG-CAACTATCCC
1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAAC-AGCCC
* ** * * *
30327937 AGACATGGTCTTACACATAATCACACATCGATGCCAACATCCT
1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAGCCC
* * * **
30327980 AGATGTGGTCTTACATGTAATCACATATCGATGCGAA-TGTCTT
1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAG-CCC
* * *
30328023 AGACGTGGTCTTACACGTAATCACATATCGATGCC-ACTGTCCT
1 AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAG-CCC
* *
30328066 AAACAG-GGTCTTACACGTAATCACATA
1 AGAC-GTGGTCTTACATGTAATCACATA
30328093 ACGGAAATCC
Statistics
Matches: 169, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
42 5 0.03
43 159 0.94
44 5 0.03
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
AGACGTGGTCTTACATGTAATCACATATCGATGCCAACAGCCC
Found at i:30327971 original size:86 final size:86
Alignment explanation
Indices: 30327869--30328092 Score: 265
Period size: 86 Copynumber: 2.6 Consensus size: 86
30327859 TCTTACATGC
* *
30327869 AATCACATATCAATGCCAACAGCCCAGACGTGGTTTTACATGTAATCACATATCGATGC-AACTA
1 AATCACATATCGATGCCAACAGCCCAGACGTGGTCTTACATGTAATCACATATCGATGCGAA-TA
30327933 TCCCAGACATGGTCTTACACAT
65 TCCCAGACATGGTCTTACACAT
* * * * *
30327955 AATCACACATCGATGCCAACATCCTAGATGTGGTCTTACATGTAATCACATATCGATGCGAATGT
1 AATCACATATCGATGCCAACAGCCCAGACGTGGTCTTACATGTAATCACATATCGATGCGAATAT
** * *
30328020 CTTAGACGTGGTCTTACACGT
66 CCCAGACATGGTCTTACACAT
* * * *
30328041 AATCACATATCGATGCC-ACTGTCCTAAACAG-GGTCTTACACGTAATCACATA
1 AATCACATATCGATGCCAACAG-CCCAGAC-GTGGTCTTACATGTAATCACATA
30328093 ACGGAAATCC
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
85 2 0.02
86 113 0.96
87 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (86 bp):
AATCACATATCGATGCCAACAGCCCAGACGTGGTCTTACATGTAATCACATATCGATGCGAATAT
CCCAGACATGGTCTTACACAT
Found at i:30328076 original size:129 final size:129
Alignment explanation
Indices: 30327838--30328090 Score: 328
Period size: 129 Copynumber: 2.0 Consensus size: 129
30327828 ATATCGTACA
**
30327838 ATGCCAATGTCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCCAGACGTGGT
1 ATGCCAACATCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCCAGACGTGGT
* * * *
30327903 TTTACATGTAATCACATATCGATGCAACTATCCCAGACATGGTCTTACACATAATCACACATCG
66 CTTACACGTAATCACATATCGATGCAACTATCCCAAACAGGGTCTTACACATAATCACACATCG
* * * * * * **
30327967 ATGCCAACATCCTAGATGTGGTCTTACATGTAATCACATATCGATGCGAA-TGTCTTAGACGTGG
1 ATGCCAACATCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAG-CCCAGACGTGG
* * * *
30328031 TCTTACACGTAATCACATATCGATGCCACTGTCCTAAACAGGGTCTTACACGTAATCACA
65 TCTTACACGTAATCACATATCGATGCAACTATCCCAAACAGGGTCTTACACATAATCACA
30328091 TAACGGAAAT
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
128 1 0.01
129 104 0.99
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (129 bp):
ATGCCAACATCCTAGACGTAGTCTTACATGCAATCACATATCAATGCCAACAGCCCAGACGTGGT
CTTACACGTAATCACATATCGATGCAACTATCCCAAACAGGGTCTTACACATAATCACACATCG
Found at i:30329597 original size:43 final size:43
Alignment explanation
Indices: 30329416--30329598 Score: 174
Period size: 43 Copynumber: 4.3 Consensus size: 43
30329406 CATATGTCAT
* * * ** *
30329416 GACATTGG-ATTCGATATGTGTTTTCGTGTAAGACCACATCTGG
1 GACATTGGCA-TCGATATTTGATTACGTGTAAGACCATGTCTAG
* *
30329459 GACATTGGCATCGACT-TATGATTTACGTGTAAGACCATGTATAG
1 GACATTGGCATCGA-TATTTGA-TTACGTGTAAGACCATGTCTAG
*** * *
30329503 GACATCAACATCG-TATTTGATTTCGTGTAAGACCCTGTCTAG
1 GACATTGGCATCGATATTTGATTACGTGTAAGACCATGTCTAG
* *
30329545 GACAATGGCATCGATATTTGATTACGTGTAAGACCATGTCTGG
1 GACATTGGCATCGATATTTGATTACGTGTAAGACCATGTCTAG
*
30329588 GACGTTGGCAT
1 GACATTGGCAT
30329599 TGTATGAGCT
Statistics
Matches: 112, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
42 29 0.26
43 54 0.48
44 29 0.26
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
GACATTGGCATCGATATTTGATTACGTGTAAGACCATGTCTAG
Found at i:30336911 original size:18 final size:18
Alignment explanation
Indices: 30336888--30336923 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
30336878 TGTCCCCTGT
*
30336888 TTTGAGAAAAAATTTCAA
1 TTTGAGAAAAAAATTCAA
30336906 TTTGAGAAAAAAATTCAA
1 TTTGAGAAAAAAATTCAA
30336924 ACATTCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.31
Consensus pattern (18 bp):
TTTGAGAAAAAAATTCAA
Found at i:30338586 original size:27 final size:26
Alignment explanation
Indices: 30338549--30338632 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
30338539 AGCATGGCTG
*
30338549 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
30338575 CCAGATACAGATATTGTGGCTGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
**
30338602 CCAGAACAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
30338629 CCAG
1 CCAG
30338633 TATACTCCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
26 12 0.24
27 39 0.76
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:30348504 original size:47 final size:47
Alignment explanation
Indices: 30348384--30349015 Score: 1048
Period size: 47 Copynumber: 13.4 Consensus size: 47
30348374 CCTTCGGGGA
* * * * * * *
30348384 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGCGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-GC
* *
30348432 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30348479 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
30348526 CTTATTACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30348573 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30348620 CTTATCACATATATACACTCTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30348667 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30348714 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30348761 CTTATCACATATATACACTTTCACATTCATCACATCGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATC-GGCCATTAGGC
30348809 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30348856 CTTATCACATATATACGCTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30348903 CTTATCATATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30348950 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30348997 CTTATCACATATATACACT
1 CTTATCACATATATACACT
30349016 GTCTTGGCTG
Statistics
Matches: 554, Mismatches: 29, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
47 471 0.85
48 83 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.