Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 1 of 343
Found at i:16 original size:7 final size:7
Alignment explanation
Indices: 1--6601 Score: 12223
Period size: 7 Copynumber: 949.3 Consensus size: 7
1 CCCT-AA
1 CCCTAAA
7 CCCTAAA
1 CCCTAAA
14 CCCTAAA
1 CCCTAAA
21 CCCT-AA
1 CCCTAAA
27 CCCTAAA
1 CCCTAAA
34 CCCTAAA
1 CCCTAAA
41 CCCTAAA
1 CCCTAAA
48 CCCTAAA
1 CCCTAAA
55 CCCT-AA
1 CCCTAAA
61 CCCTAAA
1 CCCTAAA
68 CCCTAAA
1 CCCTAAA
75 CCC--AA
1 CCCTAAA
80 CCCTAAA
1 CCCTAAA
87 CCCTAAA
1 CCCTAAA
94 CCCTAAA
1 CCCTAAA
101 CCCTAAA
1 CCCTAAA
108 CCCTAAA
1 CCCTAAA
115 CCCTAAA
1 CCCTAAA
122 CCCTAAA
1 CCCTAAA
129 CCCTAAA
1 CCCTAAA
136 CCCTAAA
1 CCCTAAA
143 CCCTAAA
1 CCCTAAA
150 CCCTAAA
1 CCCTAAA
157 CCCTAAA
1 CCCTAAA
164 CCCTAAA
1 CCCTAAA
171 CCCTAAAA
1 CCCT-AAA
179 CCCTAAAA
1 CCCT-AAA
187 CCCTAAA
1 CCCTAAA
194 CCCTAAA
1 CCCTAAA
201 CCCTAAA
1 CCCTAAA
208 CCCTAAA
1 CCCTAAA
215 CCCTAAA
1 CCCTAAA
222 CCCTAAA
1 CCCTAAA
229 CCCTAAA
1 CCCTAAA
236 CCCTAAA
1 CCCTAAA
243 CCCTAAA
1 CCCTAAA
250 CCCTAAA
1 CCCTAAA
257 CCCTAAA
1 CCCTAAA
264 CCCTAAA
1 CCCTAAA
271 CCCTAAA
1 CCCTAAA
278 CCCTAAA
1 CCCTAAA
285 CCCTAAA
1 CCCTAAA
292 CCCTAAA
1 CCCTAAA
299 CCCTAAA
1 CCCTAAA
306 CCCTAAAA
1 CCCT-AAA
314 CCCTAAA
1 CCCTAAA
321 CCCTAAA
1 CCCTAAA
328 CCCTAAA
1 CCCTAAA
335 CCCTAAA
1 CCCTAAA
342 CCCTAAA
1 CCCTAAA
349 CCCTAAA
1 CCCTAAA
356 CCCTAAA
1 CCCTAAA
363 CCCTAAA
1 CCCTAAA
370 CCCTAAA
1 CCCTAAA
377 CCCTAAA
1 CCCTAAA
384 CCCTAAA
1 CCCTAAA
391 CCCTAAA
1 CCCTAAA
398 -CCTAAA
1 CCCTAAA
404 CCCTAAA
1 CCCTAAA
*
411 ACCTAAA
1 CCCTAAA
418 CCCTAAA
1 CCCTAAA
425 CCCTAAA
1 CCCTAAA
432 CCCTAAA
1 CCCTAAA
439 CCCTAAA
1 CCCTAAA
446 CCCTAAA
1 CCCTAAA
453 CCCTAAA
1 CCCTAAA
460 CCCTAAA
1 CCCTAAA
467 CCCTAAA
1 CCCTAAA
474 CCCTAAA
1 CCCTAAA
481 CCCTAAA
1 CCCTAAA
488 CCCT-AA
1 CCCTAAA
494 CCCTAAA
1 CCCTAAA
501 CCCTAAA
1 CCCTAAA
508 CCCTAAA
1 CCCTAAA
515 CCCTAAA
1 CCCTAAA
522 CCCTAAA
1 CCCTAAA
529 -CCTAAA
1 CCCTAAA
535 CCCTAAA
1 CCCTAAA
542 CCCTAAA
1 CCCTAAA
549 CCCTAAA
1 CCCTAAA
556 CCCTAAA
1 CCCTAAA
563 -CCTAAA
1 CCCTAAA
569 CCCTAAA
1 CCCTAAA
576 CCCTAAA
1 CCCTAAA
583 CCCTAAA
1 CCCTAAA
590 CCCTAAA
1 CCCTAAA
597 CCCTAAA
1 CCCTAAA
604 CCCTAAA
1 CCCTAAA
611 CCCTAAA
1 CCCTAAA
618 CCCTAAA
1 CCCTAAA
625 CCCTAAA
1 CCCTAAA
632 CCCTAAA
1 CCCTAAA
639 CCCTAAA
1 CCCTAAA
646 CCCTAAA
1 CCCTAAA
653 CCCTAAA
1 CCCTAAA
660 CCCTAAA
1 CCCTAAA
667 CCCTAAA
1 CCCTAAA
674 CCCTAAA
1 CCCTAAA
681 CCCTAAA
1 CCCTAAA
688 CCCTAAA
1 CCCTAAA
695 CCCTAAA
1 CCCTAAA
702 CCCTAAA
1 CCCTAAA
709 CCCTAAA
1 CCCTAAA
716 CCCTAAA
1 CCCTAAA
723 CCCTAAA
1 CCCTAAA
730 CCCTAAA
1 CCCTAAA
737 CCCTAAA
1 CCCTAAA
744 CCCTAAA
1 CCCTAAA
751 CCCTAAA
1 CCCTAAA
758 CCCTAAA
1 CCCTAAA
765 CCCTAAA
1 CCCTAAA
772 CCCTAAA
1 CCCTAAA
779 CCCTAAA
1 CCCTAAA
786 CCCTAAA
1 CCCTAAA
793 CCCT-AA
1 CCCTAAA
799 CCCTAAA
1 CCCTAAA
806 CCCTAAA
1 CCCTAAA
813 CCCTAAA
1 CCCTAAA
820 CCCTAAA
1 CCCTAAA
827 CCCTAAA
1 CCCTAAA
834 CCCTAAA
1 CCCTAAA
841 CCCTAAA
1 CCCTAAA
848 CCCTAAA
1 CCCTAAA
855 CCCTAAA
1 CCCTAAA
862 CCCTAAA
1 CCCTAAA
869 CCCTAAA
1 CCCTAAA
876 CCCTAAA
1 CCCTAAA
883 CCCTAAA
1 CCCTAAA
890 CCCTAAA
1 CCCTAAA
897 CCCTAAA
1 CCCTAAA
904 CCCTAAA
1 CCCTAAA
911 CCCTAAA
1 CCCTAAA
918 CCCTAAA
1 CCCTAAA
925 CCCTAAA
1 CCCTAAA
932 CCCTAAA
1 CCCTAAA
939 CCCTAAA
1 CCCTAAA
946 CCCTAAA
1 CCCTAAA
953 CCCTAAA
1 CCCTAAA
960 CCCTAAA
1 CCCTAAA
967 CCCTAAA
1 CCCTAAA
974 CCCTAAA
1 CCCTAAA
981 CCCTAAA
1 CCCTAAA
988 CCCTAAA
1 CCCTAAA
995 CCCTAAA
1 CCCTAAA
1002 CCCTAAA
1 CCCTAAA
1009 CCCTAAA
1 CCCTAAA
1016 CCCTAAA
1 CCCTAAA
1023 CCCTAAAA
1 CCCT-AAA
1031 CCCTAAA
1 CCCTAAA
1038 CCCTAAA
1 CCCTAAA
1045 CCCTAAAAA
1 CCCT--AAA
1054 CCCTAAA
1 CCCTAAA
1061 CCCTAAA
1 CCCTAAA
1068 CCCTAAA
1 CCCTAAA
1075 CCCTAAA
1 CCCTAAA
1082 CCCTAAA
1 CCCTAAA
1089 CCCTAAA
1 CCCTAAA
1096 CCCTAAA
1 CCCTAAA
1103 CCCTAAA
1 CCCTAAA
1110 CCCTAAA
1 CCCTAAA
1117 CCCTAAA
1 CCCTAAA
1124 CCCTAAA
1 CCCTAAA
1131 CCCTAAA
1 CCCTAAA
1138 CCCTAAA
1 CCCTAAA
1145 CCCTAAA
1 CCCTAAA
1152 CCCTAAA
1 CCCTAAA
1159 CCCTAAA
1 CCCTAAA
1166 CCCTAAA
1 CCCTAAA
1173 CCCTAAA
1 CCCTAAA
1180 CCCTAAA
1 CCCTAAA
1187 CCCTAAA
1 CCCTAAA
1194 CCCTAAA
1 CCCTAAA
1201 CCCTAAAA
1 CCCT-AAA
1209 CCC-AAA
1 CCCTAAA
1215 CCCTAAA
1 CCCTAAA
1222 CCCTAAA
1 CCCTAAA
1229 CCCTAAA
1 CCCTAAA
1236 CCCTAAA
1 CCCTAAA
1243 CCCTAAA
1 CCCTAAA
1250 CCCTAAA
1 CCCTAAA
1257 CCCTAAAA
1 CCCT-AAA
1265 CCCTAAA
1 CCCTAAA
1272 CCCTAAA
1 CCCTAAA
1279 CCCTAAA
1 CCCTAAA
1286 CCCTAAA
1 CCCTAAA
1293 CCCTAAA
1 CCCTAAA
1300 CCCTAAA
1 CCCTAAA
1307 CCCTAAA
1 CCCTAAA
1314 CCCTAAA
1 CCCTAAA
1321 CCCTAAA
1 CCCTAAA
1328 CCCTAAA
1 CCCTAAA
1335 CCCTAAA
1 CCCTAAA
1342 CCCTAAA
1 CCCTAAA
1349 CCCTAAA
1 CCCTAAA
1356 CCCTAAA
1 CCCTAAA
1363 CCCTAAA
1 CCCTAAA
1370 CCCTAAA
1 CCCTAAA
1377 CCCTAAA
1 CCCTAAA
1384 CCCTAAA
1 CCCTAAA
1391 CCCTAAA
1 CCCTAAA
1398 CCCTAAA
1 CCCTAAA
1405 CCCTAAA
1 CCCTAAA
1412 CCCTAAA
1 CCCTAAA
1419 CCCTAAA
1 CCCTAAA
1426 CCCTAAA
1 CCCTAAA
1433 CCCTAAA
1 CCCTAAA
1440 CCCTAAA
1 CCCTAAA
1447 CCCTAAA
1 CCCTAAA
1454 -CCTAAA
1 CCCTAAA
1460 CCCTAAA
1 CCCTAAA
1467 CCCTAAA
1 CCCTAAA
1474 CCCTAAA
1 CCCTAAA
1481 CCCTAAA
1 CCCTAAA
1488 CCCTAAA
1 CCCTAAA
1495 CCCTAAA
1 CCCTAAA
1502 CCCTAAAA
1 CCCT-AAA
1510 CCCTAAA
1 CCCTAAA
1517 CCCTAAA
1 CCCTAAA
1524 CCCTAAA
1 CCCTAAA
1531 CCCTAAAA
1 CCCT-AAA
1539 CCCTAAA
1 CCCTAAA
1546 CCCTAAA
1 CCCTAAA
1553 CCCTAAA
1 CCCTAAA
1560 CCCTAAA
1 CCCTAAA
1567 CCCTAAA
1 CCCTAAA
1574 CCCTAAA
1 CCCTAAA
1581 CCCTAAA
1 CCCTAAA
1588 CCCT-AA
1 CCCTAAA
1594 CCCTAAA
1 CCCTAAA
1601 CCCTAAA
1 CCCTAAA
1608 CCCTAAA
1 CCCTAAA
1615 CCCTAAA
1 CCCTAAA
1622 CCCTAAA
1 CCCTAAA
1629 CCCTAAA
1 CCCTAAA
1636 CCCTAAA
1 CCCTAAA
1643 CCCTAAA
1 CCCTAAA
1650 CCCTAAA
1 CCCTAAA
1657 CCCTAAA
1 CCCTAAA
1664 CCCTAAA
1 CCCTAAA
1671 CCCTAAA
1 CCCTAAA
1678 CCCTAAA
1 CCCTAAA
1685 CCCTAAA
1 CCCTAAA
1692 CCCTAAA
1 CCCTAAA
1699 CCCTAAA
1 CCCTAAA
1706 CCCTAAA
1 CCCTAAA
1713 CCCTAAA
1 CCCTAAA
1720 CCCTAAA
1 CCCTAAA
1727 CCCTAAA
1 CCCTAAA
1734 CCCTAAA
1 CCCTAAA
1741 CCCTAAA
1 CCCTAAA
1748 CCCTAAA
1 CCCTAAA
1755 CCCTAAA
1 CCCTAAA
1762 CCCTAAA
1 CCCTAAA
1769 CCCTAAA
1 CCCTAAA
1776 CCCTAAA
1 CCCTAAA
1783 CCCTAAA
1 CCCTAAA
1790 CCCTAAA
1 CCCTAAA
1797 CCCTAAA
1 CCCTAAA
1804 CCCTAAA
1 CCCTAAA
1811 CCCTAAA
1 CCCTAAA
1818 CCCTAAA
1 CCCTAAA
1825 CCCTAAA
1 CCCTAAA
1832 CCCTAAA
1 CCCTAAA
1839 CCCTAAA
1 CCCTAAA
1846 CCCTAAAA
1 CCCT-AAA
1854 CCCTAAA
1 CCCTAAA
1861 CCCTAAA
1 CCCTAAA
1868 CCCTAAA
1 CCCTAAA
1875 CCCTAAA
1 CCCTAAA
1882 CCCTAAA
1 CCCTAAA
1889 CCCT-AA
1 CCCTAAA
1895 CCCTAAA
1 CCCTAAA
1902 CCCTAAA
1 CCCTAAA
1909 CCCTAAA
1 CCCTAAA
1916 CCCTAAA
1 CCCTAAA
1923 CCCTAAA
1 CCCTAAA
1930 CCCTAAA
1 CCCTAAA
1937 CCCTAAA
1 CCCTAAA
1944 CCCTAAA
1 CCCTAAA
1951 CCCTAAA
1 CCCTAAA
1958 CCCTAAA
1 CCCTAAA
1965 CCCTAAA
1 CCCTAAA
1972 CCCTAAA
1 CCCTAAA
1979 CCCTAAA
1 CCCTAAA
1986 CCCTAAA
1 CCCTAAA
1993 CCCTAAA
1 CCCTAAA
2000 CCCTAAA
1 CCCTAAA
2007 CCCTAAA
1 CCCTAAA
2014 CCCTAAA
1 CCCTAAA
2021 CCCTAAA
1 CCCTAAA
2028 CCCTAAA
1 CCCTAAA
2035 CCCTAAA
1 CCCTAAA
2042 CCCTAAA
1 CCCTAAA
2049 CCCTAAA
1 CCCTAAA
2056 CCCTAAA
1 CCCTAAA
2063 CCCTAAA
1 CCCTAAA
2070 CCCTAAA
1 CCCTAAA
2077 CCCTAAA
1 CCCTAAA
2084 CCCTAAA
1 CCCTAAA
2091 CCCTAAA
1 CCCTAAA
2098 CCCTAAA
1 CCCTAAA
2105 CCCTAAA
1 CCCTAAA
2112 CCCTAAA
1 CCCTAAA
2119 CCCTAAA
1 CCCTAAA
2126 CCCTAAA
1 CCCTAAA
2133 CCCTAAA
1 CCCTAAA
2140 CCCTAAA
1 CCCTAAA
2147 CCCTAAA
1 CCCTAAA
2154 CCCTAAA
1 CCCTAAA
2161 CCCTAAA
1 CCCTAAA
2168 CCCTAAA
1 CCCTAAA
2175 CCCTAAA
1 CCCTAAA
2182 CCCTAAA
1 CCCTAAA
2189 CCCTAAA
1 CCCTAAA
2196 CCCTAAAA
1 CCCT-AAA
2204 CCCTAAA
1 CCCTAAA
2211 CCCTAAA
1 CCCTAAA
2218 CCCTAAA
1 CCCTAAA
2225 CCCTAAA
1 CCCTAAA
2232 CCCTAAA
1 CCCTAAA
2239 CCCTAAA
1 CCCTAAA
2246 CCCTAAA
1 CCCTAAA
2253 CCCTAAA
1 CCCTAAA
2260 CCCTAAA
1 CCCTAAA
2267 CCCTAAA
1 CCCTAAA
2274 CCCTAAA
1 CCCTAAA
2281 CCCTAAA
1 CCCTAAA
2288 -CCTAAA
1 CCCTAAA
2294 CCCTAAA
1 CCCTAAA
2301 CCCTAAA
1 CCCTAAA
2308 CCCTAAA
1 CCCTAAA
2315 CCCTAAA
1 CCCTAAA
2322 CCCTAAA
1 CCCTAAA
2329 CCCTAAA
1 CCCTAAA
2336 CCCTAAA
1 CCCTAAA
2343 CCCTAAA
1 CCCTAAA
2350 CCCTAAA
1 CCCTAAA
2357 CCCTAAA
1 CCCTAAA
2364 CCCTAAA
1 CCCTAAA
2371 CCCTAAA
1 CCCTAAA
2378 CCCTAAA
1 CCCTAAA
2385 CCCTAAAA
1 CCCT-AAA
2393 CCCTAAA
1 CCCTAAA
2400 CCCTAAA
1 CCCTAAA
2407 CCCTAAA
1 CCCTAAA
2414 CCCTAAA
1 CCCTAAA
2421 CCCTAAA
1 CCCTAAA
2428 CCCTAAA
1 CCCTAAA
2435 CCCTAAA
1 CCCTAAA
2442 CCCTAAA
1 CCCTAAA
2449 CCCTAAA
1 CCCTAAA
2456 CCCTAAA
1 CCCTAAA
2463 CCCTAAA
1 CCCTAAA
2470 CCCTAAA
1 CCCTAAA
2477 CCCTAAA
1 CCCTAAA
2484 CCCT-AA
1 CCCTAAA
2490 CCCTAAA
1 CCCTAAA
2497 CCCTAAA
1 CCCTAAA
2504 CCCTAAA
1 CCCTAAA
2511 CCCTAAA
1 CCCTAAA
2518 CCCTAAA
1 CCCTAAA
2525 CCCTAAA
1 CCCTAAA
2532 CCCTAAA
1 CCCTAAA
2539 CCCTAAA
1 CCCTAAA
2546 CCCTAAA
1 CCCTAAA
2553 -CCTAAA
1 CCCTAAA
2559 CCCTAAA
1 CCCTAAA
2566 CCCTAAA
1 CCCTAAA
2573 CCCTAAA
1 CCCTAAA
2580 CCCTAAA
1 CCCTAAA
2587 CCCTAAA
1 CCCTAAA
2594 CCCTAAA
1 CCCTAAA
2601 CCCTAAA
1 CCCTAAA
2608 CCCTAAA
1 CCCTAAA
2615 CCCTAAA
1 CCCTAAA
2622 CCCTAAA
1 CCCTAAA
2629 CCCTAAA
1 CCCTAAA
2636 CCCTAAA
1 CCCTAAA
2643 -CCTAAA
1 CCCTAAA
2649 CCCTAAA
1 CCCTAAA
2656 CCCTAAA
1 CCCTAAA
2663 CCCTAAA
1 CCCTAAA
2670 CCCTAAA
1 CCCTAAA
2677 CCCTAAA
1 CCCTAAA
2684 CCCTAAA
1 CCCTAAA
2691 CCCTAAA
1 CCCTAAA
2698 CCCTAAAA
1 CCCT-AAA
2706 CCCTAAA
1 CCCTAAA
2713 CCCTAAA
1 CCCTAAA
2720 CCCTAAA
1 CCCTAAA
2727 CCCTAAA
1 CCCTAAA
2734 CCCTAAAA
1 CCCT-AAA
2742 CCCTAAAA
1 CCCT-AAA
2750 CCCTAAA
1 CCCTAAA
2757 CCCTAAA
1 CCCTAAA
2764 CCCTAAA
1 CCCTAAA
2771 CCCTAAA
1 CCCTAAA
2778 CCCTAAA
1 CCCTAAA
2785 CCCTAAA
1 CCCTAAA
2792 CCCTAAA
1 CCCTAAA
2799 CCCTAAA
1 CCCTAAA
2806 CCCTAAA
1 CCCTAAA
2813 CCCTAAA
1 CCCTAAA
2820 CCCTAAA
1 CCCTAAA
2827 CCCTAAA
1 CCCTAAA
2834 CCCTAAA
1 CCCTAAA
2841 CCCTAAAA
1 CCCT-AAA
2849 CCCTAAA
1 CCCTAAA
2856 CCCT-AA
1 CCCTAAA
2862 CCCTAAA
1 CCCTAAA
2869 CCCTAAAA
1 CCCT-AAA
2877 CCCTAAA
1 CCCTAAA
2884 CCCTAAA
1 CCCTAAA
2891 CCCTAAA
1 CCCTAAA
2898 CCCTAAAA
1 CCCT-AAA
2906 CCCTAAA
1 CCCTAAA
2913 CCCTAAA
1 CCCTAAA
2920 CCCTAAA
1 CCCTAAA
2927 CCCTAAA
1 CCCTAAA
2934 CCCTAAA
1 CCCTAAA
2941 CCCTAAA
1 CCCTAAA
2948 CCCTAAA
1 CCCTAAA
2955 -CCTAAA
1 CCCTAAA
2961 CCCTAAA
1 CCCTAAA
2968 CCCTAAAA
1 CCCT-AAA
2976 CCCTAAA
1 CCCTAAA
2983 CCCTAAA
1 CCCTAAA
2990 CCCTAAA
1 CCCTAAA
2997 CCCTAAA
1 CCCTAAA
3004 CCCTAAA
1 CCCTAAA
3011 CCCTAAA
1 CCCTAAA
3018 CCCTAAA
1 CCCTAAA
3025 CCCTAAA
1 CCCTAAA
3032 CCCTAAA
1 CCCTAAA
3039 CCCTAAA
1 CCCTAAA
3046 CCCTAAA
1 CCCTAAA
3053 CCCTAAA
1 CCCTAAA
3060 CCCTAAA
1 CCCTAAA
3067 CCCTAAA
1 CCCTAAA
3074 CCCTAAA
1 CCCTAAA
3081 CCCTAAA
1 CCCTAAA
3088 CCCTAAA
1 CCCTAAA
3095 CCCTAAA
1 CCCTAAA
3102 CCCTAAA
1 CCCTAAA
3109 CCCTAAA
1 CCCTAAA
3116 CCCTAAA
1 CCCTAAA
3123 CCC-AAA
1 CCCTAAA
3129 CCCTAAA
1 CCCTAAA
*
3136 CCCTAAC
1 CCCTAAA
3143 CCCTAAA
1 CCCTAAA
3150 CCCT-AA
1 CCCTAAA
*
3156 CCCCAAA
1 CCCTAAA
3163 CCCTAAA
1 CCCTAAA
3170 CCCTAAA
1 CCCTAAA
3177 CCCTAAA
1 CCCTAAA
3184 CCCTAAA
1 CCCTAAA
3191 CCCTAAA
1 CCCTAAA
3198 CCCTAAA
1 CCCTAAA
3205 CCCTAAA
1 CCCTAAA
3212 CCCTAAA
1 CCCTAAA
3219 CCCTAAA
1 CCCTAAA
3226 CCCTAAA
1 CCCTAAA
3233 CCCTAAA
1 CCCTAAA
3240 CCCTAAA
1 CCCTAAA
3247 CCCTAAA
1 CCCTAAA
3254 CCCTAAAA
1 CCCT-AAA
3262 CCCTAAA
1 CCCTAAA
3269 CCCTAAA
1 CCCTAAA
3276 CCCTAAA
1 CCCTAAA
3283 CCCTAAA
1 CCCTAAA
3290 CCCTAAA
1 CCCTAAA
3297 CCCTAAA
1 CCCTAAA
3304 CCCTAAA
1 CCCTAAA
3311 CCCTAAA
1 CCCTAAA
3318 CCCTAAA
1 CCCTAAA
3325 CCCTAAA
1 CCCTAAA
3332 CCCTAAA
1 CCCTAAA
3339 CCCTAAA
1 CCCTAAA
3346 CCCTAAA
1 CCCTAAA
3353 CCCTAAA
1 CCCTAAA
3360 CCCTAAA
1 CCCTAAA
3367 CCCTAAA
1 CCCTAAA
3374 CCCTAAA
1 CCCTAAA
3381 CCCTAAA
1 CCCTAAA
3388 CCCTAAA
1 CCCTAAA
3395 CCCTAAA
1 CCCTAAA
3402 CCCTAAA
1 CCCTAAA
3409 CCCTAAA
1 CCCTAAA
3416 CCCTAAA
1 CCCTAAA
3423 CCCTAAA
1 CCCTAAA
3430 CCCTAAA
1 CCCTAAA
3437 CCCTAAA
1 CCCTAAA
3444 CCCTAAA
1 CCCTAAA
3451 CCCTAAA
1 CCCTAAA
3458 CCCTAAA
1 CCCTAAA
3465 CCCTAAA
1 CCCTAAA
3472 CCCTAAA
1 CCCTAAA
3479 CCCTAAA
1 CCCTAAA
3486 CCCTAAA
1 CCCTAAA
3493 CCCTAAA
1 CCCTAAA
*
3500 CCCCAAAA
1 -CCCTAAA
3508 CCCTAAA
1 CCCTAAA
3515 CCCTAAA
1 CCCTAAA
3522 CCCTAAAA
1 CCCT-AAA
3530 CCCTAAAA
1 CCCT-AAA
3538 CCCTAAA
1 CCCTAAA
3545 CCCTAAA
1 CCCTAAA
3552 CCCTAAA
1 CCCTAAA
3559 CCCTAAA
1 CCCTAAA
3566 CCCTAAA
1 CCCTAAA
3573 CCCTAAA
1 CCCTAAA
3580 CCCTAAA
1 CCCTAAA
3587 CCCTAAA
1 CCCTAAA
3594 CCCTAAA
1 CCCTAAA
3601 CCCTAAA
1 CCCTAAA
3608 CCCTAAA
1 CCCTAAA
3615 CCCTAAA
1 CCCTAAA
3622 CCCTAAA
1 CCCTAAA
3629 CCCTAAA
1 CCCTAAA
3636 CCCTAAA
1 CCCTAAA
3643 CCCTAAA
1 CCCTAAA
3650 CCCTAAA
1 CCCTAAA
3657 CCCTAAA
1 CCCTAAA
3664 CCCTAAA
1 CCCTAAA
3671 CCCTAAA
1 CCCTAAA
3678 CCCTAAA
1 CCCTAAA
3685 CCCTAAA
1 CCCTAAA
3692 CCCTAAA
1 CCCTAAA
3699 CCCTAAA
1 CCCTAAA
3706 CCCTAAA
1 CCCTAAA
3713 CCCTAAA
1 CCCTAAA
3720 CCCTAAA
1 CCCTAAA
3727 CCCTAAA
1 CCCTAAA
3734 CCCTAAA
1 CCCTAAA
3741 CCCTAAA
1 CCCTAAA
3748 CCCTAAA
1 CCCTAAA
3755 CCCTAAA
1 CCCTAAA
3762 CCCTAAA
1 CCCTAAA
3769 -CCTAAA
1 CCCTAAA
3775 CCCTAAA
1 CCCTAAA
3782 CCCTAAA
1 CCCTAAA
3789 CCCT-AA
1 CCCTAAA
3795 CCCTAAA
1 CCCTAAA
3802 CCCTAAA
1 CCCTAAA
3809 CCCTAAA
1 CCCTAAA
3816 CCCTAAA
1 CCCTAAA
3823 CCCTAAA
1 CCCTAAA
3830 CCCTAAA
1 CCCTAAA
3837 CCCTAAA
1 CCCTAAA
3844 CCCTAAA
1 CCCTAAA
3851 CCCTAAA
1 CCCTAAA
3858 CCCTAAA
1 CCCTAAA
3865 CCCTAAA
1 CCCTAAA
3872 CCCT-AA
1 CCCTAAA
3878 CCCTAAA
1 CCCTAAA
3885 CCCTAAA
1 CCCTAAA
3892 CCCTAAA
1 CCCTAAA
3899 CCCTAAA
1 CCCTAAA
3906 CCCTAAA
1 CCCTAAA
3913 CCCTAAA
1 CCCTAAA
3920 CCCTAAA
1 CCCTAAA
3927 CCCTAAA
1 CCCTAAA
3934 CCCTAAA
1 CCCTAAA
3941 CCCTAAA
1 CCCTAAA
3948 CCCTAAA
1 CCCTAAA
3955 CCCTAAA
1 CCCTAAA
3962 CCCTAAA
1 CCCTAAA
3969 CCCTAAA
1 CCCTAAA
3976 CCCTAAA
1 CCCTAAA
3983 CCCTAAA
1 CCCTAAA
3990 CCCTAAA
1 CCCTAAA
3997 CCCTAAAA
1 CCCT-AAA
4005 CCCTAAA
1 CCCTAAA
4012 CCCTAAA
1 CCCTAAA
4019 CCCTAAA
1 CCCTAAA
4026 CCCTAAA
1 CCCTAAA
4033 CCCTAAA
1 CCCTAAA
4040 CCCTAAA
1 CCCTAAA
4047 CCCTAAA
1 CCCTAAA
4054 CCCTAAA
1 CCCTAAA
4061 -CCTAAA
1 CCCTAAA
4067 CCCTAAA
1 CCCTAAA
4074 CCCTAAA
1 CCCTAAA
4081 CCCTAAA
1 CCCTAAA
4088 CCCTAAA
1 CCCTAAA
4095 CCCTAAA
1 CCCTAAA
4102 CCCTAAA
1 CCCTAAA
4109 CCCTAAA
1 CCCTAAA
4116 CCCTAAA
1 CCCTAAA
4123 CCCTAAA
1 CCCTAAA
4130 CCCTAAA
1 CCCTAAA
4137 -CCTAAA
1 CCCTAAA
4143 CCCTAAA
1 CCCTAAA
4150 CCCTAAA
1 CCCTAAA
4157 CCCTAAA
1 CCCTAAA
4164 CCCTAAA
1 CCCTAAA
4171 CCCTAAA
1 CCCTAAA
4178 CCCTAAA
1 CCCTAAA
4185 CCCTAAA
1 CCCTAAA
4192 CCCTAAA
1 CCCTAAA
4199 CCCTAAA
1 CCCTAAA
4206 CCCTAAA
1 CCCTAAA
4213 CCCTAAA
1 CCCTAAA
4220 CCCTAAA
1 CCCTAAA
4227 CCCTAAA
1 CCCTAAA
4234 CCCTAAA
1 CCCTAAA
4241 CCCTAAA
1 CCCTAAA
4248 CCCTAAA
1 CCCTAAA
4255 CCCTAAA
1 CCCTAAA
4262 CCCTAAA
1 CCCTAAA
4269 CCCTAAA
1 CCCTAAA
4276 CCCTAAA
1 CCCTAAA
4283 CCCTAAA
1 CCCTAAA
4290 CCCTAAA
1 CCCTAAA
4297 CCCTAAA
1 CCCTAAA
4304 CCCTAAA
1 CCCTAAA
4311 CCCTAAA
1 CCCTAAA
4318 CCCTAAA
1 CCCTAAA
4325 CCCTAAA
1 CCCTAAA
4332 CCCTAAA
1 CCCTAAA
4339 CCCTAAA
1 CCCTAAA
4346 CCCTAAA
1 CCCTAAA
4353 CCCTAAA
1 CCCTAAA
4360 CCCTAAA
1 CCCTAAA
4367 CCCTAAA
1 CCCTAAA
4374 -CCTAAA
1 CCCTAAA
4380 CCCT-AA
1 CCCTAAA
4386 CCCTAAA
1 CCCTAAA
4393 CCCTAAA
1 CCCTAAA
4400 CCCTAAA
1 CCCTAAA
4407 CCCTAAA
1 CCCTAAA
4414 CCCTAAA
1 CCCTAAA
4421 CCCTAAA
1 CCCTAAA
4428 CCCTAAA
1 CCCTAAA
4435 CCCTAAA
1 CCCTAAA
4442 CCCTAAA
1 CCCTAAA
4449 CCCTAAA
1 CCCTAAA
4456 CCCTAAA
1 CCCTAAA
4463 CCCTAAA
1 CCCTAAA
4470 CCCTAAA
1 CCCTAAA
4477 CCCTAAA
1 CCCTAAA
4484 CCCTAAA
1 CCCTAAA
4491 CCCTAAA
1 CCCTAAA
4498 CCCTAAA
1 CCCTAAA
4505 CCCT-AA
1 CCCTAAA
4511 CCCTAAA
1 CCCTAAA
4518 CCCTAAA
1 CCCTAAA
4525 CCCTAAA
1 CCCTAAA
4532 CCCTAAA
1 CCCTAAA
4539 CCCTAAA
1 CCCTAAA
4546 CCCTAAA
1 CCCTAAA
4553 CCCTAAA
1 CCCTAAA
4560 CCCTAAA
1 CCCTAAA
4567 CCCTAAA
1 CCCTAAA
4574 CCCTAAA
1 CCCTAAA
4581 CCCTAAA
1 CCCTAAA
4588 CCCTAAA
1 CCCTAAA
4595 CCCTAAA
1 CCCTAAA
4602 CCCTAAA
1 CCCTAAA
4609 CCCTAAA
1 CCCTAAA
4616 CCCTAAA
1 CCCTAAA
4623 CCCTAAA
1 CCCTAAA
4630 CCCTAAA
1 CCCTAAA
4637 CCCTAAA
1 CCCTAAA
4644 CCCTAAA
1 CCCTAAA
4651 CCCTAAA
1 CCCTAAA
4658 CCCTAAA
1 CCCTAAA
4665 CCCTAAA
1 CCCTAAA
4672 CCCTAAA
1 CCCTAAA
4679 CCCTAAA
1 CCCTAAA
4686 CCCTAAA
1 CCCTAAA
4693 CCCTAAA
1 CCCTAAA
4700 CCCTAAA
1 CCCTAAA
4707 CCCTAAA
1 CCCTAAA
4714 CCCTAAAA
1 CCCT-AAA
4722 CCCTAAA
1 CCCTAAA
4729 CCCTAAA
1 CCCTAAA
4736 CCCTAAA
1 CCCTAAA
4743 CCCTAAA
1 CCCTAAA
4750 CCCTAAA
1 CCCTAAA
4757 CCCTAAA
1 CCCTAAA
4764 CCCTAAA
1 CCCTAAA
4771 CCCTAAA
1 CCCTAAA
4778 CCCTAAA
1 CCCTAAA
4785 CCCTAAA
1 CCCTAAA
4792 CCCTAAA
1 CCCTAAA
4799 CCCTAAA
1 CCCTAAA
4806 CCCTAAA
1 CCCTAAA
4813 CCCTAAA
1 CCCTAAA
4820 CCCTAAA
1 CCCTAAA
4827 CCCTAAA
1 CCCTAAA
4834 CCCTAAA
1 CCCTAAA
4841 CCCTAAA
1 CCCTAAA
4848 CCCTAAA
1 CCCTAAA
4855 CCCTAAA
1 CCCTAAA
4862 CCCTAAA
1 CCCTAAA
4869 CCCTAAA
1 CCCTAAA
4876 CCCTAAA
1 CCCTAAA
4883 CCCTAAA
1 CCCTAAA
4890 CCCTAAA
1 CCCTAAA
4897 CCCTAAA
1 CCCTAAA
4904 CCCTAAA
1 CCCTAAA
4911 CCCTAAA
1 CCCTAAA
4918 CCCTAAA
1 CCCTAAA
4925 CCCTAAA
1 CCCTAAA
4932 CCCTAAA
1 CCCTAAA
4939 CCCTAAA
1 CCCTAAA
4946 CCCTAAA
1 CCCTAAA
4953 CCCTAAA
1 CCCTAAA
4960 CCCTAAA
1 CCCTAAA
4967 CCCTAAA
1 CCCTAAA
4974 CCCTAAA
1 CCCTAAA
4981 CCCTAAA
1 CCCTAAA
4988 CCCTAAA
1 CCCTAAA
4995 CCCTAAA
1 CCCTAAA
5002 CCCTAAA
1 CCCTAAA
5009 CCCTAAA
1 CCCTAAA
5016 CCCTAAA
1 CCCTAAA
5023 CCCTAAA
1 CCCTAAA
5030 CCCTAAA
1 CCCTAAA
5037 CCCTAAA
1 CCCTAAA
5044 CCCTAAA
1 CCCTAAA
5051 CCCTAAA
1 CCCTAAA
5058 CCCTAAA
1 CCCTAAA
5065 CCCTAAA
1 CCCTAAA
5072 CCCTAAA
1 CCCTAAA
5079 CCCTAAA
1 CCCTAAA
5086 CCCTAAA
1 CCCTAAA
5093 CCCTAAA
1 CCCTAAA
5100 CCCTAAA
1 CCCTAAA
5107 CCCTAAA
1 CCCTAAA
5114 CCCTAAA
1 CCCTAAA
5121 CCCTAAA
1 CCCTAAA
5128 CCCTAAA
1 CCCTAAA
5135 CCCTAAA
1 CCCTAAA
5142 CCCTAAA
1 CCCTAAA
5149 CCCTAAA
1 CCCTAAA
5156 CCCTAAA
1 CCCTAAA
5163 CCCTAAA
1 CCCTAAA
5170 CCCTAAA
1 CCCTAAA
5177 CCCTAAA
1 CCCTAAA
5184 CCCTAAA
1 CCCTAAA
5191 CCCTAAA
1 CCCTAAA
5198 CCCTAAA
1 CCCTAAA
5205 CCCTAAA
1 CCCTAAA
5212 CCCTAAA
1 CCCTAAA
5219 CCCTAAA
1 CCCTAAA
5226 CCCTAAA
1 CCCTAAA
5233 CCCTAAA
1 CCCTAAA
5240 CCCTAAA
1 CCCTAAA
5247 CCCTAAA
1 CCCTAAA
5254 CCCTAAA
1 CCCTAAA
5261 CCCTAAA
1 CCCTAAA
5268 CCCTAAA
1 CCCTAAA
5275 CCCTAAA
1 CCCTAAA
5282 CCCTAAA
1 CCCTAAA
5289 CCCTAAA
1 CCCTAAA
5296 CCCTAAA
1 CCCTAAA
5303 CCCTAAA
1 CCCTAAA
5310 CCCTAAA
1 CCCTAAA
5317 CCCTAAA
1 CCCTAAA
5324 CCCTAAA
1 CCCTAAA
5331 CCCTAAA
1 CCCTAAA
5338 CCCTAAA
1 CCCTAAA
5345 CCCTAAA
1 CCCTAAA
5352 CCCTAAA
1 CCCTAAA
5359 CCCTAAA
1 CCCTAAA
5366 CCCTAAA
1 CCCTAAA
5373 CCCTAAA
1 CCCTAAA
5380 CCCTAAA
1 CCCTAAA
5387 CCCTAAA
1 CCCTAAA
5394 CCCTAAA
1 CCCTAAA
5401 CCCTAAA
1 CCCTAAA
5408 CCCTAAA
1 CCCTAAA
5415 CCCTAAA
1 CCCTAAA
5422 CCCTAAA
1 CCCTAAA
5429 CCCTAAA
1 CCCTAAA
5436 CCC-AAA
1 CCCTAAA
5442 CCCTAAA
1 CCCTAAA
5449 CCCTAAA
1 CCCTAAA
5456 CCC-AAA
1 CCCTAAA
5462 CCCTAAA
1 CCCTAAA
5469 CCCTAAA
1 CCCTAAA
5476 CCCTAAA
1 CCCTAAA
5483 CCCTAAA
1 CCCTAAA
5490 CCCTAAA
1 CCCTAAA
5497 CCCTAAA
1 CCCTAAA
5504 CCCTAAA
1 CCCTAAA
5511 CCC-AAA
1 CCCTAAA
5517 CCCTAAA
1 CCCTAAA
5524 CCCTAAA
1 CCCTAAA
5531 CCCTAAA
1 CCCTAAA
5538 CCCTAAA
1 CCCTAAA
5545 CCCTAAA
1 CCCTAAA
5552 CCCTAAA
1 CCCTAAA
5559 CCCTAAA
1 CCCTAAA
5566 CCCTAAA
1 CCCTAAA
5573 CCCTAAA
1 CCCTAAA
5580 CCCTAAA
1 CCCTAAA
5587 CCCTAAA
1 CCCTAAA
5594 CCCTAAA
1 CCCTAAA
5601 CCCTAAA
1 CCCTAAA
5608 CCCTAAA
1 CCCTAAA
5615 CCCTAAA
1 CCCTAAA
5622 CCCTAAA
1 CCCTAAA
5629 CCCTAAA
1 CCCTAAA
5636 CCCTAAA
1 CCCTAAA
5643 CCCTAAA
1 CCCTAAA
5650 CCCTAAA
1 CCCTAAA
5657 CCCTAAA
1 CCCTAAA
5664 CCCTAAA
1 CCCTAAA
5671 CCCTAAA
1 CCCTAAA
5678 CCCTAAA
1 CCCTAAA
5685 CCCTAAA
1 CCCTAAA
5692 CCCTAAA
1 CCCTAAA
5699 CCCTAAA
1 CCCTAAA
5706 CCCTAAA
1 CCCTAAA
5713 CCCTAAA
1 CCCTAAA
5720 CCCTAAA
1 CCCTAAA
5727 CCCTAAA
1 CCCTAAA
5734 CCCTAAA
1 CCCTAAA
5741 CCCTAAA
1 CCCTAAA
5748 CCCTAAA
1 CCCTAAA
5755 CCCTAAA
1 CCCTAAA
5762 CCCTAAA
1 CCCTAAA
5769 CCCTAAA
1 CCCTAAA
5776 CCCTAAA
1 CCCTAAA
5783 CCCTAAA
1 CCCTAAA
5790 CCCTAAA
1 CCCTAAA
5797 CCCTAAA
1 CCCTAAA
5804 CCCTAAA
1 CCCTAAA
5811 CCCTAAA
1 CCCTAAA
5818 CCCTAAA
1 CCCTAAA
5825 CCCTAAA
1 CCCTAAA
5832 CCCTAAA
1 CCCTAAA
5839 CCCTAAA
1 CCCTAAA
5846 CCCTAAA
1 CCCTAAA
5853 CCCTAAA
1 CCCTAAA
5860 CCCTAAA
1 CCCTAAA
5867 CCCTAAA
1 CCCTAAA
5874 CCCTAAA
1 CCCTAAA
5881 CCCTAAA
1 CCCTAAA
5888 CCCTAAA
1 CCCTAAA
5895 CCCTAAA
1 CCCTAAA
5902 CCCTAAA
1 CCCTAAA
5909 CCCTAAA
1 CCCTAAA
5916 CCCTAAAA
1 CCCT-AAA
5924 CCCTAAAA
1 CCCT-AAA
5932 CCCTAAA
1 CCCTAAA
5939 CCCTAAA
1 CCCTAAA
5946 CCCTAAA
1 CCCTAAA
5953 CCCTAAA
1 CCCTAAA
5960 CCCTAAA
1 CCCTAAA
5967 CCCTAAA
1 CCCTAAA
5974 CCCTAAA
1 CCCTAAA
5981 CCCTAAA
1 CCCTAAA
5988 CCCTAAA
1 CCCTAAA
5995 CCCTAAA
1 CCCTAAA
6002 CCCTAAA
1 CCCTAAA
6009 CCCTAAA
1 CCCTAAA
6016 CCCTAAA
1 CCCTAAA
6023 CCCTAAA
1 CCCTAAA
6030 CCCTAAA
1 CCCTAAA
6037 CCCTAAA
1 CCCTAAA
6044 CCCTAAA
1 CCCTAAA
6051 CCCTAAA
1 CCCTAAA
6058 CCCTAAA
1 CCCTAAA
6065 CCCTAAA
1 CCCTAAA
6072 CCCTAAA
1 CCCTAAA
6079 CCCTAAA
1 CCCTAAA
6086 CCCTAAA
1 CCCTAAA
6093 CCCTAAA
1 CCCTAAA
6100 CCCTAAA
1 CCCTAAA
6107 CCCTAAA
1 CCCTAAA
6114 CCCTAAA
1 CCCTAAA
6121 CCCTAAA
1 CCCTAAA
6128 CCCTAAA
1 CCCTAAA
6135 CCCTAAA
1 CCCTAAA
6142 CCCTAAA
1 CCCTAAA
6149 CCCTAAA
1 CCCTAAA
6156 CCCTAAA
1 CCCTAAA
6163 CCCTAAA
1 CCCTAAA
6170 CCCTAAA
1 CCCTAAA
6177 CCCTAAA
1 CCCTAAA
6184 CCCTAAA
1 CCCTAAA
6191 CCCTAAA
1 CCCTAAA
6198 CCCTAAA
1 CCCTAAA
6205 CCCTAAA
1 CCCTAAA
6212 CCCTAAA
1 CCCTAAA
6219 CCCTAAA
1 CCCTAAA
6226 CCC-AAA
1 CCCTAAA
6232 CCCTAAA
1 CCCTAAA
6239 CCC-AAA
1 CCCTAAA
6245 CCC-AAA
1 CCCTAAA
6251 CCCTAAA
1 CCCTAAA
6258 CCCTAAA
1 CCCTAAA
6265 CCC-AAA
1 CCCTAAA
6271 CCC-AAA
1 CCCTAAA
6277 CCC-AAA
1 CCCTAAA
*
6283 CCCTGAA
1 CCCTAAA
6290 CCCTAAA
1 CCCTAAA
6297 CCCTAAA
1 CCCTAAA
6304 CCC-AAA
1 CCCTAAA
6310 CCCT-AA
1 CCCTAAA
6316 CCCT--A
1 CCCTAAA
6321 CCCTAAA
1 CCCTAAA
6328 CCCTAAA
1 CCCTAAA
6335 CCCT--A
1 CCCTAAA
6340 CCC-AAA
1 CCCTAAA
6346 CCCTAAA
1 CCCTAAA
6353 CCC-AAA
1 CCCTAAA
6359 CCC--AA
1 CCCTAAA
6364 CCC--AA
1 CCCTAAA
6369 CCC--AA
1 CCCTAAA
6374 CCC--AA
1 CCCTAAA
6379 CCC-AAA
1 CCCTAAA
6385 CCC-AAA
1 CCCTAAA
6391 CCCTAAA
1 CCCTAAA
6398 CCC-AAA
1 CCCTAAA
6404 CCCTAAA
1 CCCTAAA
6411 CCCTAAA
1 CCCTAAA
6418 CCCTAAA
1 CCCTAAA
6425 CCCTAAA
1 CCCTAAA
6432 CCCT-AA
1 CCCTAAA
6438 CCC-AAA
1 CCCTAAA
*
6444 CCC-CAA
1 CCCTAAA
*
6450 CCC-CAA
1 CCCTAAA
*
6456 CCC-CAA
1 CCCTAAA
6462 CCC--AA
1 CCCTAAA
*
6467 CCC-CAA
1 CCCTAAA
*
6473 CCC-CAA
1 CCCTAAA
*
6479 CCC-CAA
1 CCCTAAA
*
6485 CCC-CAA
1 CCCTAAA
*
6491 CCCCAAA
1 CCCTAAA
6498 CCCTAAA
1 CCCTAAA
6505 CCCTAAA
1 CCCTAAA
6512 CCCTAAA
1 CCCTAAA
*
6519 CCCGAAA
1 CCCTAAA
6526 CCC-AAA
1 CCCTAAA
*
6532 CCCCAAAA
1 -CCCTAAA
* *
6540 CCCGAAC
1 CCCTAAA
*
6547 CCCAAAA
1 CCCTAAA
*
6554 CCC-GAA
1 CCCTAAA
*
6560 CCC-CAA
1 CCCTAAA
*
6566 CCC-CAA
1 CCCTAAA
**
6572 CCCCGAA
1 CCCTAAA
6579 CCCTAAA
1 CCCTAAA
6586 CCCTAAA
1 CCCTAAA
6593 CCCTAAA
1 CCCTAAA
6600 CC
1 CC
6602 TCATAAATAT
Statistics
Matches: 6497, Mismatches: 23, Indels: 149
0.97 0.00 0.02
Matches are distributed among these distances:
5 39 0.01
6 327 0.05
7 5937 0.91
8 187 0.03
9 7 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCTAAA
Found at i:6701 original size:23 final size:23
Alignment explanation
Indices: 6671--6717 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
6661 CAAAAAGAAA
6671 CCAAATCTAAGCATAATATAAGC
1 CCAAATCTAAGCATAATATAAGC
*
6694 CCAAATCTAAGCATTATATAAGC
1 CCAAATCTAAGCATAATATAAGC
6717 C
1 C
6718 TAAAATGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.23, G:0.09, T:0.23
Consensus pattern (23 bp):
CCAAATCTAAGCATAATATAAGC
Found at i:8437 original size:11 final size:12
Alignment explanation
Indices: 8406--8431 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8396 AAAATATTTG
8406 AAAACAAGGGAA
1 AAAACAAGGGAA
8418 AAAACAAGGGAA
1 AAAACAAGGGAA
8430 AA
1 AA
8432 TAAAGGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAACAAGGGAA
Found at i:9482 original size:22 final size:22
Alignment explanation
Indices: 9455--9592 Score: 144
Period size: 21 Copynumber: 6.5 Consensus size: 22
9445 ACCAACTCAC
9455 ACCGAACCGGGGTCATAAAAAA
1 ACCGAACCGGGGTCATAAAAAA
*
9477 ATCGAACCGGGG---TAAAAAA
1 ACCGAACCGGGGTCATAAAAAA
*
9496 ACCGAACCGGGGT-ACAAAAAA
1 ACCGAACCGGGGTCATAAAAAA
9517 ACCGAACCGGGGTCAT-AAAAA
1 ACCGAACCGGGGTCATAAAAAA
* * *
9538 CCCGAACCGGGGTCCTTAAAAA
1 ACCGAACCGGGGTCATAAAAAA
* ***
9560 ATCGAACC-GGGTCCCCAAAAA
1 ACCGAACCGGGGTCATAAAAAA
9581 ACCTGAACCGGG
1 ACC-GAACCGGG
9593 ATATCCCTGG
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
19 18 0.18
21 51 0.52
22 28 0.28
23 2 0.02
ACGTcount: A:0.41, C:0.26, G:0.24, T:0.09
Consensus pattern (22 bp):
ACCGAACCGGGGTCATAAAAAA
Found at i:10020 original size:30 final size:30
Alignment explanation
Indices: 9986--10043 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
9976 ATTAGATTGG
9986 TGTCAACGGTAACATTTATGGTGATTAAGA
1 TGTCAACGGTAACATTTATGGTGATTAAGA
*
10016 TGTCAACGGTAACATTTATTGTGATTAA
1 TGTCAACGGTAACATTTATGGTGATTAA
10044 AACATTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (30 bp):
TGTCAACGGTAACATTTATGGTGATTAAGA
Found at i:17460 original size:21 final size:22
Alignment explanation
Indices: 17421--17461 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
17411 TATCCATCAT
*
17421 CAATTTTATTAGGCATAACACA
1 CAATTTTATTAGCCATAACACA
17443 CAATTTTATTA-CCATAACA
1 CAATTTTATTAGCCATAACA
17462 AAATTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (22 bp):
CAATTTTATTAGCCATAACACA
Found at i:19228 original size:22 final size:20
Alignment explanation
Indices: 19203--19276 Score: 80
Period size: 22 Copynumber: 3.5 Consensus size: 20
19193 GCCAACTCAC
19203 ACCGAACCGGGGTCATAAAAAA
1 ACCGAACCGGGGTC-T-AAAAA
19225 ACCGAACCGGGG--TAAAAA
1 ACCGAACCGGGGTCTAAAAA
*
19243 ACCGAACCGGGGTCCCCAAAAA
1 ACCGAACCGGGGT--CTAAAAA
19265 ACCTGAACCGGG
1 ACC-GAACCGGG
19277 ATATCCCTGG
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
18 17 0.37
19 1 0.02
22 20 0.43
23 8 0.17
ACGTcount: A:0.39, C:0.28, G:0.26, T:0.07
Consensus pattern (20 bp):
ACCGAACCGGGGTCTAAAAA
Found at i:19243 original size:18 final size:18
Alignment explanation
Indices: 19220--19255 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
19210 CGGGGTCATA
19220 AAAAAACCGAACCGGGGT
1 AAAAAACCGAACCGGGGT
19238 AAAAAACCGAACCGGGGT
1 AAAAAACCGAACCGGGGT
19256 CCCCAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.28, T:0.06
Consensus pattern (18 bp):
AAAAAACCGAACCGGGGT
Found at i:19706 original size:30 final size:30
Alignment explanation
Indices: 19672--19729 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
19662 ATTAGATTGG
19672 TGTCAACGGTAACATTTATGGTGATTAAGA
1 TGTCAACGGTAACATTTATGGTGATTAAGA
*
19702 TGTCAACGGTAACATTTATTGTGATTAA
1 TGTCAACGGTAACATTTATGGTGATTAA
19730 AACATTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (30 bp):
TGTCAACGGTAACATTTATGGTGATTAAGA
Found at i:25653 original size:27 final size:27
Alignment explanation
Indices: 25615--25666 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
25605 CGTGACACAC
*
25615 ACACATACAGATAGAAAGAATATATAT
1 ACACAAACAGATAGAAAGAATATATAT
*
25642 ACACAAACAGATGGAAAGAATATAT
1 ACACAAACAGATAGAAAGAATATAT
25667 CAAAAGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.56, C:0.12, G:0.13, T:0.19
Consensus pattern (27 bp):
ACACAAACAGATAGAAAGAATATATAT
Found at i:25722 original size:52 final size:52
Alignment explanation
Indices: 25660--25873 Score: 189
Period size: 52 Copynumber: 3.9 Consensus size: 52
25650 AGATGGAAAG
* * *
25660 AATATATCAAAAGAATATATATAGATGCAAATTTCACTTACGGATGCATGCA
1 AATATATCAAAAGAATATATATACATACAAATTTCACTTACAGATGCATGCA
* *
25712 AATATATCAAAAGAATATATATACAAACACATTTCACTTACAGATGCATGAAACAA
1 AATATATCAAAAGAATATATATACATACAAATTTCACTTACAGATGCATG---C-A
* * ** *
25768 AATTTATAACATATAGCAAGAAATATATATACATGCAAATTTCACTTATGGATGAATGCA
1 AA--TATATC--A-A--AAG-AATATATATACATACAAATTTCACTTACAGATGCATGCA
* * *
25828 AATATATAAAAAGAATATATA-A-ACACACATTTCACTTACAGATGCA
1 AATATATCAAAAGAATATATATACATACAAATTTCACTTACAGATGCA
25874 GGAAGCAAAA
Statistics
Matches: 130, Mismatches: 20, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
50 18 0.14
51 1 0.01
52 53 0.41
53 3 0.02
55 2 0.02
56 4 0.03
58 9 0.07
60 4 0.03
61 2 0.02
63 3 0.02
64 31 0.24
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (52 bp):
AATATATCAAAAGAATATATATACATACAAATTTCACTTACAGATGCATGCA
Found at i:25889 original size:114 final size:116
Alignment explanation
Indices: 25673--25889 Score: 348
Period size: 116 Copynumber: 1.9 Consensus size: 116
25663 ATATCAAAAG
* * *
25673 AATATATATAGATGCAAATTTCACTTACGGATGCATGCAAATATATCAAAAGAATATATATACAA
1 AATATATATACATGCAAATTTCACTTACGGATGAATGCAAATATATAAAAAGAATATATATACAA
* *
25738 ACACATTTCACTTACAGATGCATGAAACAAAATTTATAACATATAGCAAGA
66 ACACATTTCACTTACAGATGCAGGAAACAAAAGTTATAACATATAGCAAGA
* *
25789 AATATATATACATGCAAATTTCACTTATGGATGAATGCAAATATATAAAAAGAATATATA-A-AC
1 AATATATATACATGCAAATTTCACTTACGGATGAATGCAAATATATAAAAAGAATATATATACAA
*
25852 ACACATTTCACTTACAGATGCAGGAAGCAAAAGTTATA
66 ACACATTTCACTTACAGATGCAGGAAACAAAAGTTATA
25890 TGGAATGTGC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
114 36 0.39
115 1 0.01
116 56 0.60
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (116 bp):
AATATATATACATGCAAATTTCACTTACGGATGAATGCAAATATATAAAAAGAATATATATACAA
ACACATTTCACTTACAGATGCAGGAAACAAAAGTTATAACATATAGCAAGA
Found at i:29441 original size:29 final size:30
Alignment explanation
Indices: 29409--29468 Score: 113
Period size: 29 Copynumber: 2.0 Consensus size: 30
29399 AAAGAAAGTT
29409 ATATTTTAAACAATTTTTTATACAAG-AAA
1 ATATTTTAAACAATTTTTTATACAAGTAAA
29438 ATATTTTAAACAATTTTTTATACAAGTAAA
1 ATATTTTAAACAATTTTTTATACAAGTAAA
29468 A
1 A
29469 GGAAAAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (30 bp):
ATATTTTAAACAATTTTTTATACAAGTAAA
Found at i:36678 original size:43 final size:43
Alignment explanation
Indices: 36630--36722 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
36620 ATTCTAGAAA
36630 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAATGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAATGGAAC
* *
36673 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAATGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAATGGAAC
36716 TATTTTC
1 TATTTTC
36723 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.54
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAATGGAAC
Found at i:41353 original size:19 final size:19
Alignment explanation
Indices: 41307--41354 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
41297 GTATATATTT
41307 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
41325 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
41344 TAAGTTTTATT
1 TAAATTTTATT
41355 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:41416 original size:43 final size:43
Alignment explanation
Indices: 41363--41461 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 43
41353 TTCATATTCT
*
41363 AGAAATATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAG
1 AGAACTATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAG
* * *
41406 GGAACTATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAG
1 AGAACTATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAG
41449 AGAACTATTTTCT
1 AGAACTATTTTCT
41462 CAATTAGGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.13, T:0.49
Consensus pattern (43 bp):
AGAACTATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAG
Found at i:42401 original size:2 final size:2
Alignment explanation
Indices: 42394--42440 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
42384 TCTTAACCAG
*
42394 GA GA GA GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
42436 GA GA G
1 GA GA G
42441 TTACCATACT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:49790 original size:20 final size:20
Alignment explanation
Indices: 49753--49796 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
49743 TTTATATAAT
*
49753 TTAAAAATATATATAATATA
1 TTAAAAATATATAAAATATA
*
49773 TTAAAAATA-CTAAAA-ATA
1 TTAAAAATATATAAAATATA
49791 TTAAAA
1 TTAAAA
49797 TATTTTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 4 0.18
20 9 0.41
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
TTAAAAATATATAAAATATA
Found at i:49810 original size:21 final size:22
Alignment explanation
Indices: 49784--49833 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
49774 TAAAAATACT
* * *
49784 AAAAATATTAAAAT-ATTTTTC
1 AAAAATATAAAAATAAATTTTA
49805 AAAAAT-TAAAAATAAATTTTA
1 AAAAATATAAAAATAAATTTTA
49826 AAAAATAT
1 AAAAATAT
49834 GTATACTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.25
21 17 0.71
22 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAATATAAAAATAAATTTTA
Found at i:49919 original size:30 final size:30
Alignment explanation
Indices: 49874--49931 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
49864 CTTAATAAGT
49874 AAATATCTCTAAAATAATAACAAAATTAAC
1 AAATATCTCTAAAATAATAACAAAATTAAC
* *
49904 AAATTTCTTTAAAATAATAACAAAATTA
1 AAATATCTCTAAAATAATAACAAAATTA
49932 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (30 bp):
AAATATCTCTAAAATAATAACAAAATTAAC
Found at i:56503 original size:42 final size:43
Alignment explanation
Indices: 56437--56551 Score: 135
Period size: 42 Copynumber: 2.7 Consensus size: 43
56427 CATTCTCTTT
* * * * *
56437 TCTATTCCAGGTAAATACCGCTCATATCCCAC-CTTGGAATAA
1 TCTATTCCAGGGATATCCCTCTCATATCCCACTCTTAGAATAA
*
56479 TCTATTCCAGGGATATCCCTCTCATTTCCC-CTCTTAGAATAA
1 TCTATTCCAGGGATATCCCTCTCATATCCCACTCTTAGAATAA
* * *
56521 TCAATTCCGGGGATATCCCTCTGATATCCCA
1 TCTATTCCAGGGATATCCCTCTCATATCCCA
56552 TCCCGGTTCA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.98
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (43 bp):
TCTATTCCAGGGATATCCCTCTCATATCCCACTCTTAGAATAA
Found at i:60357 original size:10 final size:10
Alignment explanation
Indices: 60342--60371 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
60332 CACCATTGGT
60342 CCACCCGTCA
1 CCACCCGTCA
60352 CCACCCGTCA
1 CCACCCGTCA
60362 CCACCCGTCA
1 CCACCCGTCA
60372 ATCTCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.60, G:0.10, T:0.10
Consensus pattern (10 bp):
CCACCCGTCA
Found at i:65360 original size:3 final size:3
Alignment explanation
Indices: 65347--65426 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
65337 GAGGGCATAT
65347 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
65391 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
65427 AAAAAAATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:65371 original size:12 final size:12
Alignment explanation
Indices: 65347--65427 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
65337 GAGGGCATAT
65347 ATAATAT-AATA
1 ATAATATAAATA
65358 ATAATATAAATA
1 ATAATATAAATA
*
65370 ATAATATATACATG
1 ATAATATA-A-ATA
*
65384 AGAA-AT-AATA
1 ATAATATAAATA
65394 ATAATATAAATA
1 ATAATATAAATA
* *
65406 ATAGTAAAAATA
1 ATAATATAAATA
*
65418 ATAAAATAAA
1 ATAATATAAA
65428 AAAAAATAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 33 0.59
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:65373 original size:18 final size:18
Alignment explanation
Indices: 65343--65422 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
65333 TGGAGAGGGC
65343 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
65361 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
65380 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
65397 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
65415 ATAATAAA
1 AT-ATAAA
65423 ATAAAAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:65437 original size:24 final size:24
Alignment explanation
Indices: 65390--65438 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
65380 CATGAGAAAT
* * * *
65390 AATAATAATATAAATAATAGTAAA
1 AATAATAAAATAAAAAAAAATAAA
65414 AATAATAAAATAAAAAAAAATAAA
1 AATAATAAAATAAAAAAAAATAAA
65438 A
1 A
65439 CAAAGCTCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (24 bp):
AATAATAAAATAAAAAAAAATAAA
Found at i:65854 original size:22 final size:22
Alignment explanation
Indices: 65820--65919 Score: 121
Period size: 22 Copynumber: 4.4 Consensus size: 22
65810 TTTGTAGGCA
*
65820 AGTGGAGTGGTTGGGGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTT
*
65842 AGTAGG-GTGGTTGGGGTGGTTT
1 AGT-GGAGTGGTTGGAGTGGTTT
*
65864 AGTGGAATGGTTTAGTGTAGTGGTTT
1 AGTGGAGTGG-TT-G-G-AGTGGTTT
65890 AGTGGAGTGGTTGGAGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTT
65912 AGTGGAGT
1 AGTGGAGT
65920 AAAGATATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
21 2 0.03
22 41 0.59
23 5 0.07
24 2 0.03
25 3 0.04
26 16 0.23
ACGTcount: A:0.14, C:0.00, G:0.49, T:0.37
Consensus pattern (22 bp):
AGTGGAGTGGTTGGAGTGGTTT
Found at i:65917 original size:13 final size:13
Alignment explanation
Indices: 65820--65919 Score: 82
Period size: 13 Copynumber: 8.6 Consensus size: 13
65810 TTTGTAGGCA
65820 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
65832 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
65842 AGTAGG-GTGG-TT
1 AGT-GGAGTGGTTT
65854 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
*
65864 AGTGGAATGGTTT
1 AGTGGAGTGGTTT
*
65877 AGTGTAGTGGTTT
1 AGTGGAGTGGTTT
65890 AGTGGAGTGG--T
1 AGTGGAGTGGTTT
65901 --TGGAGTGGTTT
1 AGTGGAGTGGTTT
65912 AGTGGAGT
1 AGTGGAGT
65920 AAAGATATTT
Statistics
Matches: 72, Mismatches: 4, Indels: 23
0.73 0.04 0.23
Matches are distributed among these distances:
9 18 0.25
10 6 0.08
11 6 0.08
12 4 0.06
13 38 0.53
ACGTcount: A:0.14, C:0.00, G:0.49, T:0.37
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:68609 original size:53 final size:53
Alignment explanation
Indices: 68552--68685 Score: 162
Period size: 54 Copynumber: 2.5 Consensus size: 53
68542 ATTCTCTGAT
*
68552 GCCATAGCCCAGCTATGGTCTTATACGG-ATCACTTGTATCACATTAATCCGAA
1 GCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATATCACATT-ATCCGAA
* * *** * *
68605 GCCATAGCCCAGCTATGGTCATATACGGAAATCACTTATCTTTTATTTTCCGAT
1 GCCATAGCCCAGCTATGGTCTTATACGG-AATCACTTATATCACATTATCCGAA
*
68659 GCTATAGCCCAGCTATGGTCTTATACG
1 GCCATAGCCCAGCTATGGTCTTATACG
68686 AATATCGCTT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 27 0.39
54 30 0.43
55 12 0.17
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (53 bp):
GCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATATCACATTATCCGAA
Found at i:68677 original size:54 final size:54
Alignment explanation
Indices: 68494--68685 Score: 183
Period size: 53 Copynumber: 3.6 Consensus size: 54
68484 ATATATCATA
* ** * * * * * *
68494 CCGATGCCATATCCTGGATATGGTCTTACACGG-GAGCACTTATAATTTATTCT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATATTTTATTAT
* * ***
68547 CTGATGCCATAGCCCAGCTATGGTCTTATACGG--ATCACTTGTATCACATTAAT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATATTTTATT-AT
* * * *
68600 CCGAAGCCATAGCCCAGCTATGGTCATATACGGAAATCACTTATCTTTTATTTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATATTTTATTAT
*
68654 CCGATGCTATAGCCCAGCTATGGTCTTATACG
1 CCGATGCCATAGCCCAGCTATGGTCTTATACG
68686 AATATCGCTT
Statistics
Matches: 111, Mismatches: 25, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
52 11 0.10
53 58 0.52
54 30 0.27
55 12 0.11
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (54 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATATTTTATTAT
Found at i:74775 original size:52 final size:52
Alignment explanation
Indices: 74637--74809 Score: 186
Period size: 52 Copynumber: 3.3 Consensus size: 52
74627 CTATGGTCTT
* * *
74637 ACACAGATCACATTACACACCGATGCCATATCCCAGATATGATCTTATAC-GGA
1 ACACATATCACA-T-CACACCGATGCCATAGCCCAGATATGGTCTTATACAGGA
** *
74690 ATCACATTATCATGTCACACCGATGTCATAGCCCAGATATGGTCTTATACAGGA
1 A-CACA-TATCACATCACACCGATGCCATAGCCCAGATATGGTCTTATACAGGA
** * * **
74744 ACACATATCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACAGCC
1 ACACATATCACATCACACCGATGCCATAGCCCAGATATGGTCTTATACAGGA
*
74796 GCACATATCACATC
1 ACACATATCACATC
74810 TTTTTCGTCG
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
52 50 0.50
53 37 0.37
54 9 0.09
55 4 0.04
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (52 bp):
ACACATATCACATCACACCGATGCCATAGCCCAGATATGGTCTTATACAGGA
Found at i:76306 original size:19 final size:20
Alignment explanation
Indices: 76270--76308 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
76260 ACCTTAAAAA
76270 TTTAAATTATATTAAATTTT
1 TTTAAATTATATTAAATTTT
76290 TTTAAACTTAT-TT-AATTTT
1 TTTAAA-TTATATTAAATTTT
76309 AAAACAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTAAATTATATTAAATTTT
Found at i:80560 original size:21 final size:21
Alignment explanation
Indices: 80528--80568 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80518 TCCAGAAGCA
80528 TAAAAAATCTGAACCGGACAC
1 TAAAAAATCTGAACCGGACAC
*
80549 TAAAACAA-CTGACCCGGACA
1 TAAAA-AATCTGAACCGGACA
80569 GGGGAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.46, C:0.27, G:0.15, T:0.12
Consensus pattern (21 bp):
TAAAAAATCTGAACCGGACAC
Found at i:90453 original size:54 final size:54
Alignment explanation
Indices: 90371--90575 Score: 175
Period size: 53 Copynumber: 3.8 Consensus size: 54
90361 GGCAACAAGT
* *
90371 GATAAGCGATATT-CGTATAAGACCATAGCTGGGCTATAGCATCGGAAAATAAAA
1 GATAAGTGAT-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAATAAAA
* * * ***
90425 GATAAGTGATTTCCGTATATGACCATAGCTGGGCTATGGCTTCGGATTAATGTGA
1 GATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGA-AAATAAAA
* * * * *
90480 TACAAGTGA--TCCGTATAAGACCATAGCTGGGCTATGGCATCAGAGAATAAAT
1 GATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAATAAAA
* * * * * ** *
90532 TATAAGTG-CTCCCGTGTAAGACCATATCCAGGATATGGCATCGG
1 GATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGG
90576 TATGATATAT
Statistics
Matches: 121, Mismatches: 26, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
52 10 0.08
53 61 0.50
54 39 0.32
55 11 0.09
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (54 bp):
GATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAATAAAA
Found at i:93147 original size:13 final size:13
Alignment explanation
Indices: 93129--93250 Score: 98
Period size: 13 Copynumber: 10.6 Consensus size: 13
93119 AAATATCTTT
93129 ACTCCACTAAACC
1 ACTCCACTAAACC
93142 ACT-C-C--AACC
1 ACTCCACTAAACC
93151 ACTCCACTAAACC
1 ACTCCACTAAACC
93164 ACT-C-C--AACC
1 ACTCCACTAAACC
93173 ACTCCACTAAACC
1 ACTCCACTAAACC
*
93186 ACTACACTAAACC
1 ACTCCACTAAACC
*
93199 ATTCCACTAAACC
1 ACTCCACTAAACC
93212 AC-CC-C--AACC
1 ACTCCACTAAACC
93221 AC-CCTACTAAACC
1 ACTCC-ACTAAACC
93234 AC-CC-C--AACC
1 ACTCCACTAAACC
93243 ACTCCACT
1 ACTCCACT
93251 TGCCTACAAA
Statistics
Matches: 90, Mismatches: 4, Indels: 31
0.72 0.03 0.25
Matches are distributed among these distances:
9 28 0.31
10 4 0.04
11 8 0.09
12 4 0.04
13 46 0.51
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.14
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:93154 original size:22 final size:22
Alignment explanation
Indices: 93129--93250 Score: 165
Period size: 22 Copynumber: 5.4 Consensus size: 22
93119 AAATATCTTT
93129 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
93151 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
93173 ACTCCACTAAACCACTACACTAAACC
1 ACTCCACTAAACCACT-C-C--AACC
* *
93199 ATTCCACTAAACCACCCCAACC
1 ACTCCACTAAACCACTCCAACC
*
93221 AC-CCTACTAAACCACCCCAACC
1 ACTCC-ACTAAACCACTCCAACC
93243 ACTCCACT
1 ACTCCACT
93251 TGCCTACAAA
Statistics
Matches: 91, Mismatches: 3, Indels: 12
0.86 0.03 0.11
Matches are distributed among these distances:
21 2 0.02
22 65 0.71
23 3 0.03
24 2 0.02
25 1 0.01
26 18 0.20
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.14
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:93698 original size:21 final size:22
Alignment explanation
Indices: 93662--93703 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
93652 ATTTTTACTA
*
93662 TCATTTATATTATTATTATTTC
1 TCATGTATATTATTATTATTTC
93684 TCATGTATA-TATTATTATTT
1 TCATGTATATTATTATTATTT
93704 ATATTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (22 bp):
TCATGTATATTATTATTATTTC
Found at i:97378 original size:33 final size:38
Alignment explanation
Indices: 97336--97417 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
97326 GTAAAAACAC
97336 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
97369 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
97408 AATAATAATA
1 AATAGTAATA
97418 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:97426 original size:19 final size:18
Alignment explanation
Indices: 97402--97443 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
97392 TGGTATTAGT
*
97402 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
97421 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
97439 AATAA
1 AATAA
97444 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:97846 original size:13 final size:13
Alignment explanation
Indices: 97813--97907 Score: 109
Period size: 13 Copynumber: 7.9 Consensus size: 13
97803 TTTGTAGGCA
97813 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
97825 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
97835 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
97848 AGTAGG-GTGG-TT
1 AGT-GGAGTGGTTT
97860 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
97870 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
97883 AGTGTAGTGGTTT
1 AGTGGAGTGGTTT
97896 AGTGGAGTGGTT
1 AGTGGAGTGGTT
97908 GAAGTGGTTT
Statistics
Matches: 72, Mismatches: 2, Indels: 17
0.79 0.02 0.19
Matches are distributed among these distances:
9 10 0.14
10 6 0.08
11 4 0.06
12 6 0.08
13 44 0.61
14 2 0.03
ACGTcount: A:0.13, C:0.00, G:0.49, T:0.38
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:97865 original size:35 final size:35
Alignment explanation
Indices: 97819--97885 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
97809 GGCAAGTGGA
97819 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTAGG
1 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTAGG
97854 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
1 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
97886 GTAGTGGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.10, C:0.00, G:0.51, T:0.39
Consensus pattern (35 bp):
GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTAGG
Found at i:97881 original size:48 final size:48
Alignment explanation
Indices: 97828--97925 Score: 153
Period size: 48 Copynumber: 2.0 Consensus size: 48
97818 AGTGGTTGGG
**
97828 GTGGTTTAGTGGAGTGGTTTAGTAGG-GTGGTTGGGGTGGTTTAGTGGA
1 GTGGTTTAGTGGAGTGGTTTAGT-GGAGTGGTTGAAGTGGTTTAGTGGA
*
97876 GTGGTTTAGTGTAGTGGTTTAGTGGAGTGGTTGAAGTGGTTTAGTGGA
1 GTGGTTTAGTGGAGTGGTTTAGTGGAGTGGTTGAAGTGGTTTAGTGGA
97924 GT
1 GT
97926 AAAGATATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 2 0.04
48 44 0.96
ACGTcount: A:0.14, C:0.00, G:0.47, T:0.39
Consensus pattern (48 bp):
GTGGTTTAGTGGAGTGGTTTAGTGGAGTGGTTGAAGTGGTTTAGTGGA
Found at i:97893 original size:35 final size:34
Alignment explanation
Indices: 97817--97894 Score: 129
Period size: 35 Copynumber: 2.2 Consensus size: 34
97807 TAGGCAAGTG
97817 GAGTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
1 GAGTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
*
97851 AGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
1 -GAGTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
97886 GTAGTGGTT
1 G-AGTGGTT
97895 TAGTGGAGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 39 0.98
ACGTcount: A:0.12, C:0.00, G:0.50, T:0.38
Consensus pattern (34 bp):
GAGTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
Found at i:101806 original size:33 final size:33
Alignment explanation
Indices: 101764--101832 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
101754 AAAAAGATAG
* *
101764 GAAAAAAGGGATTATGGTTGCGAAACTGAACAT
1 GAAAAAAGGGATTATGGCTGCAAAACTGAACAT
* *
101797 GAAAAAAGGGATTATGGCTGTAAAACTGGACAT
1 GAAAAAAGGGATTATGGCTGCAAAACTGAACAT
101830 GAA
1 GAA
101833 TAATGCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.43, C:0.09, G:0.28, T:0.20
Consensus pattern (33 bp):
GAAAAAAGGGATTATGGCTGCAAAACTGAACAT
Found at i:104497 original size:53 final size:49
Alignment explanation
Indices: 104422--104583 Score: 163
Period size: 47 Copynumber: 3.3 Consensus size: 49
104412 GATATATGAT
* * * *
104422 TTCCGTATAATACTATAGCTGGGCTATGGCATCAGAGAGGCGTGATTATGTGC
1 TTCCGTATAAGACCATATCTGGGATATGGCATC--AG-GGCGTGA-TATGTGC
*
104475 TTCCGTATAAGACCATATCTGGGATATGGCATC--GGTGTGATATGTGC
1 TTCCGTATAAGACCATATCTGGGATATGGCATCAGGGCGTGATATGTGC
* * *
104522 TACTGTATAAGACCATATCTGGGATATGGCATCA--GTGTGATATGTG-
1 TTCCGTATAAGACCATATCTGGGATATGGCATCAGGGCGTGATATGTGC
* *
104568 ATCCGTGTAAGACCAT
1 TTCCGTATAAGACCAT
104584 GGTTGGGCTA
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
46 12 0.12
47 50 0.52
48 6 0.06
53 29 0.30
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TTCCGTATAAGACCATATCTGGGATATGGCATCAGGGCGTGATATGTGC
Found at i:104533 original size:47 final size:48
Alignment explanation
Indices: 104463--104633 Score: 181
Period size: 47 Copynumber: 3.6 Consensus size: 48
104453 TCAGAGAGGC
*
104463 GTGATTATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGGT
1 GTGATTATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCGGT
* *
104511 GTGA-TATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAGT
1 GTGATTATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCGGT
* * * * * *
104558 GTGA-TATGTGAT-CCGTGTAAGACCATGGT-TGGGCTATGGCTTTGGT
1 GTGATTATGTGCTACCGTATAAGACCAT-ATCTGGGATATGGCATCGGT
* *
104604 GTGTATTATGTGACTA-TGTGTAAGACCATA
1 GTG-ATTATGTG-CTACCGTATAAGACCATA
104634 GTTTTACTAT
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
46 28 0.27
47 53 0.51
48 10 0.10
49 13 0.12
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (48 bp):
GTGATTATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCGGT
Found at i:108811 original size:26 final size:25
Alignment explanation
Indices: 108782--108831 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
108772 TATTTAAATT
*
108782 CCTTAAGAACATCAATTTGTAGATTG
1 CCTTAA-AACATCAACTTGTAGATTG
* *
108808 CCTTTAATCATCAACTTGTAGATT
1 CCTTAAAACATCAACTTGTAGATT
108832 ACTTTTAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (25 bp):
CCTTAAAACATCAACTTGTAGATTG
Found at i:108819 original size:25 final size:25
Alignment explanation
Indices: 108791--108846 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
108781 TCCTTAAGAA
*
108791 CATCAATTTGTAGATTGCCTTTAAT
1 CATCAATTTGTAGATTACCTTTAAT
* *
108816 CATCAACTTGTAGATTACTTTTAAT
1 CATCAATTTGTAGATTACCTTTAAT
108841 C-TCAAT
1 CATCAAT
108847 CATGTACCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (25 bp):
CATCAATTTGTAGATTACCTTTAAT
Found at i:108852 original size:25 final size:25
Alignment explanation
Indices: 108799--108852 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
108789 AACATCAATT
* *
108799 TGTAGATTGCCTTTAATCATCAACT
1 TGTAGATTACCTTTAATCATCAACA
*
108824 TGTAGATTACTTTTAATC-TCAATCA
1 TGTAGATTACCTTTAATCATCAA-CA
108849 TGTA
1 TGTA
108853 CCTGCATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.43
Consensus pattern (25 bp):
TGTAGATTACCTTTAATCATCAACA
Found at i:117578 original size:22 final size:23
Alignment explanation
Indices: 117553--117598 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
117543 CAACCAAATC
117553 AATTCAT-CATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
117575 AATTCATACATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
117598 A
1 A
117599 CGTCATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.32
23 14 0.64
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:117604 original size:23 final size:23
Alignment explanation
Indices: 117556--117611 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
117546 CCAAATCAAT
*
117556 TCAT-CATATTTTCAAGATAAAT
1 TCATACATATTTTCAAGATAAAG
*
117578 TCATACATATTTAT-AAGATAACG
1 TCATACATATTT-TCAAGATAAAG
117601 TCATCACATAT
1 TCAT-ACATAT
117612 CTAAAACCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 4 0.14
23 18 0.62
24 7 0.24
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (23 bp):
TCATACATATTTTCAAGATAAAG
Found at i:121193 original size:22 final size:22
Alignment explanation
Indices: 121167--121212 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
121157 AATCACATAT
121167 TTACATGTCATGATAAATATCA
1 TTACATGTCATGATAAATATCA
121189 TTACATGTCATGATAAATATCA
1 TTACATGTCATGATAAATATCA
121211 TT
1 TT
121213 CTCTTGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (22 bp):
TTACATGTCATGATAAATATCA
Found at i:123349 original size:30 final size:30
Alignment explanation
Indices: 123294--123351 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
123284 TATTTGTACT
* *
123294 TTTAGTCCCTTAAATTTTTTATATTTACAC
1 TTTAATCCCTTAAATTTTTGATATTTACAC
123324 TTTAATCCCTTAAA-TTTTGAGTATTTAC
1 TTTAATCCCTTAAATTTTTGA-TATTTAC
123352 TCTTGGTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.28, C:0.16, G:0.05, T:0.52
Consensus pattern (30 bp):
TTTAATCCCTTAAATTTTTGATATTTACAC
Found at i:141760 original size:12 final size:12
Alignment explanation
Indices: 141743--141786 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
141733 TTTACTTCAC
141743 TTTCTTGTTTCT
1 TTTCTTGTTTCT
*
141755 TTTCTTTTTTCT
1 TTTCTTGTTTCT
*
141767 TTT-TTTTTTCT
1 TTTCTTGTTTCT
*
141778 TTTTTTGTT
1 TTTCTTGTT
141787 CTCTAAATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 11 0.38
12 18 0.62
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.84
Consensus pattern (12 bp):
TTTCTTGTTTCT
Found at i:141773 original size:11 final size:11
Alignment explanation
Indices: 141750--141788 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
141740 CACTTTCTTG
141750 TTTCTTTTCTTT
1 TTTCTTTT-TTT
141762 TTTCTTTTTTT
1 TTTCTTTTTTT
141773 TTTCTTTTTTT
1 TTTCTTTTTTT
*
141784 GTTCT
1 TTTCT
141789 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.85
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:142364 original size:60 final size:60
Alignment explanation
Indices: 142289--142409 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
142279 TTTTACACAA
142289 ATTTGAACCTTTCAAGCACCACTATGTTACCAATGCTATAATATTTGTTACCCAAAGTCT
1 ATTTGAACCTTTCAAGCACCACTATGTTACCAATGCTATAATATTTGTTACCCAAAGTCT
142349 ATTTGAACCTTTCAAGCACCACTATGTTACCAATGCTATAATATTTGTTACCCAAAGTCT
1 ATTTGAACCTTTCAAGCACCACTATGTTACCAATGCTATAATATTTGTTACCCAAAGTCT
142409 A
1 A
142410 AATTAGACAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (60 bp):
ATTTGAACCTTTCAAGCACCACTATGTTACCAATGCTATAATATTTGTTACCCAAAGTCT
Found at i:142537 original size:49 final size:49
Alignment explanation
Indices: 142465--142563 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
142455 CTATAAAAGA
142465 AAGTGATACATTGTAAATATTTCTAAATATTCACGAGGCATTCTTACTT
1 AAGTGATACATTGTAAATATTTCTAAATATTCACGAGGCATTCTTACTT
142514 AAGTGATACATTGTAAATATTTCTAAATATTCACGAGGCATTCTTACTT
1 AAGTGATACATTGTAAATATTTCTAAATATTCACGAGGCATTCTTACTT
142563 A
1 A
142564 GATCAAGTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (49 bp):
AAGTGATACATTGTAAATATTTCTAAATATTCACGAGGCATTCTTACTT
Found at i:144039 original size:18 final size:18
Alignment explanation
Indices: 144016--144064 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
144006 AAGCATTTAC
144016 ATTAAGATTGCAATTAAA
1 ATTAAGATTGCAATTAAA
* ** *
144034 ATTAAGAATGCGTTTACA
1 ATTAAGATTGCAATTAAA
*
144052 ACTAAGATTGCAA
1 ATTAAGATTGCAA
144065 AATTTTGCAC
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (18 bp):
ATTAAGATTGCAATTAAA
Found at i:153458 original size:14 final size:13
Alignment explanation
Indices: 153439--153468 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
153429 TTTCTAAATT
153439 AATTTTTTAATAA
1 AATTTTTTAATAA
*
153452 AATTTTTTAATCA
1 AATTTTTTAATAA
153465 AATT
1 AATT
153469 CTCTAGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTTTTTAATAA
Found at i:155444 original size:26 final size:25
Alignment explanation
Indices: 155395--155501 Score: 160
Period size: 26 Copynumber: 4.2 Consensus size: 25
155385 TGGTACAAAT
* *
155395 TGATAATGGGTAGTTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
155420 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
155446 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
155472 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
155498 TGAT
1 TGAT
155502 GGACATTTCA
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
25 11 0.15
26 62 0.83
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:155475 original size:52 final size:51
Alignment explanation
Indices: 155395--155501 Score: 178
Period size: 52 Copynumber: 2.1 Consensus size: 51
155385 TGGTACAAAT
*
155395 TGATAATGGGTAGTTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
155446 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGG-TAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
155498 TGAT
1 TGAT
155502 GGACATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 10 0.19
52 42 0.81
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (51 bp):
TGATAATGGGTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:171270 original size:19 final size:20
Alignment explanation
Indices: 171246--171288 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
171236 GGTTTTTTCG
* *
171246 TGAAATTTAATGCACATG-A
1 TGAAATGTAATGCAAATGAA
171265 TGAAATGTAATGCAAATGAA
1 TGAAATGTAATGCAAATGAA
171285 TGAA
1 TGAA
171289 TGCAAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.28
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGAA
Found at i:178807 original size:28 final size:28
Alignment explanation
Indices: 178735--178807 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
178725 TTTCTTTCTC
* *
178735 TCTTTTTTTTTACTTTTTTACTTTTTTG
1 TCTTTTTTTTTATTTTTTTACTGTTTTG
* *
178763 ACTTTTGTTTTTTTTTTTTTA-TGTTTTG
1 TCTTTT-TTTTTATTTTTTTACTGTTTTG
178791 TCTTTTTTCTTTATTTT
1 TCTTTTTT-TTTATTTT
178808 ATTCTATTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
27 2 0.05
28 23 0.62
29 12 0.32
ACGTcount: A:0.07, C:0.08, G:0.05, T:0.79
Consensus pattern (28 bp):
TCTTTTTTTTTATTTTTTTACTGTTTTG
Found at i:178961 original size:18 final size:17
Alignment explanation
Indices: 178921--178968 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
178911 TTTTTAAACA
*
178921 TTAAATATTA-AATATT
1 TTAAATATTATAAAATT
*
178937 TTTAATATTATAAAATAT
1 TTAAATATTATAAAAT-T
*
178955 TTAAATATTTTAAA
1 TTAAATATTATAAA
178969 CTTTCAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 9 0.35
17 4 0.15
18 13 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAATATTATAAAATT
Found at i:179023 original size:21 final size:23
Alignment explanation
Indices: 178999--179055 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 23
178989 TTTATAATAA
178999 TTTAAATATTATTTAATT-TG-T
1 TTTAAATATTATTTAATTATGAT
*
179020 TTTATAATATT-TTAAATTATGAT
1 TTTA-AATATTATTTAATTATGAT
179043 TTTAAA-ATTATTT
1 TTTAAATATTATTT
179056 TTAAAGATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 13 0.43
22 12 0.40
23 5 0.17
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTAAATATTATTTAATTATGAT
Found at i:179164 original size:14 final size:15
Alignment explanation
Indices: 179147--179181 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
179137 ATAAAAAAAT
179147 AAAAATATTT-TTAA
1 AAAAATATTTGTTAA
*
179161 AAAATTATTTGTTAA
1 AAAAATATTTGTTAA
179176 AAAAAT
1 AAAAAT
179182 GAATTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (15 bp):
AAAAATATTTGTTAA
Found at i:179366 original size:11 final size:12
Alignment explanation
Indices: 179342--179384 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
179332 AATTTCATGT
179342 ACTTTTTTATTA
1 ACTTTTTTATTA
179354 ACTTTTTTA-TA
1 ACTTTTTTATTA
179365 ACTTTTTCT-TTA
1 ACTTTTT-TATTA
*
179377 AATTTTTT
1 ACTTTTTT
179385 TAAGTTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
ACTTTTTTATTA
Found at i:179369 original size:23 final size:22
Alignment explanation
Indices: 179342--179397 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
179332 AATTTCATGT
*
179342 ACTTTTTTATTAACTTTTTTATA
1 ACTTTTTTATTAAATTTTTT-TA
179365 ACTTTTTCT-TTAAATTTTTTTA
1 ACTTTTT-TATTAAATTTTTTTA
* *
179387 AGTTTTATATT
1 ACTTTTTTATT
179398 TTTCTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 9 0.32
23 17 0.61
24 1 0.04
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (22 bp):
ACTTTTTTATTAAATTTTTTTA
Found at i:179422 original size:13 final size:13
Alignment explanation
Indices: 179406--179449 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
179396 TTTTTCTTAT
*
179406 TTTATTTTGTTTA
1 TTTATTTTATTTA
179419 TTTATTTTATTTA
1 TTTATTTTATTTA
* *
179432 TTTTTTGTTATTAA
1 TTTATT-TTATTTA
179446 TTTA
1 TTTA
179450 AAAAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:179443 original size:10 final size:9
Alignment explanation
Indices: 179402--179435 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
179392 TATATTTTTC
179402 TTATTTTAT
1 TTATTTTAT
179411 TT-TGTTTAT
1 TTAT-TTTAT
179420 TTATTTTAT
1 TTATTTTAT
179429 TTATTTT
1 TTATTTT
179436 TTGTTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTATTTTAT
Found at i:179528 original size:24 final size:23
Alignment explanation
Indices: 179450--179527 Score: 79
Period size: 23 Copynumber: 3.4 Consensus size: 23
179440 TATTAATTTA
* * *
179450 AAAAATTTAAAATGTATA-TTTC
1 AAAAATTTTAAATATATATTTTT
*
179472 AAATATTTTATAATATATATTTTT
1 AAAAATTTTA-AATATATATTTTT
*
179496 TAAAATTTTAAATAT-TATTTTT
1 AAAAATTTTAAATATATATTTTT
179518 AAATAATTTT
1 AAA-AATTTT
179528 TAAAATTTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
22 17 0.37
23 18 0.39
24 11 0.24
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (23 bp):
AAAAATTTTAAATATATATTTTT
Found at i:179690 original size:20 final size:22
Alignment explanation
Indices: 179655--179700 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
179645 AAAATAAAAT
179655 AATTTCAAAAATATATATTT-A
1 AATTTCAAAAATATATATTTGA
*
179676 AATTT-AAATATATATATTTGA
1 AATTTCAAAAATATATATTTGA
179697 AATT
1 AATT
179701 ATTTCTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
AATTTCAAAAATATATATTTGA
Found at i:179767 original size:22 final size:22
Alignment explanation
Indices: 179741--179811 Score: 81
Period size: 22 Copynumber: 3.1 Consensus size: 22
179731 TTGCAAAATT
*
179741 AAATTTTCAAAATATGTATTTA
1 AAATTTTCAAAATATATATTTA
*
179763 AAATTTTAAAAATATATATTAATA
1 AAATTTTCAAAATATATATT--TA
*
179787 AAATATTTC-AAATATATATTAA
1 AAAT-TTTCAAAATATATATTTA
179809 AAA
1 AAA
179812 AATAATATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
22 22 0.52
24 17 0.40
25 3 0.07
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (22 bp):
AAATTTTCAAAATATATATTTA
Found at i:179798 original size:47 final size:46
Alignment explanation
Indices: 179741--179910 Score: 175
Period size: 47 Copynumber: 3.6 Consensus size: 46
179731 TTGCAAAATT
*
179741 AAAT-TTTCAAAATATGTATTTAAAATTTTAAAAATATATATTAATA
1 AAATATTTC-AAATATATATTTAAAATTTTAAAAATATATATTAATA
*** ** * *
179787 AAATATTTCAAATATATA-TTAAAAAAATAATATTTAAAATTTTAA-A
1 AAATATTTCAAATATATATTTAAAATTTTAA-AAAT-ATATATTAATA
*
179833 AAGTAATTTCAAATATATATTTAAAATTTTAAAAAATATATATTAATA
1 AAAT-ATTTCAAATATATATTTAAAATTTT-AAAAATATATATTAATA
*
179881 AAATATTTTAAATATATATTTCAAAATTTT
1 AAATATTTCAAATATATATTT-AAAATTTT
179911 TAAAGTTAAT
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
45 9 0.09
46 18 0.18
47 48 0.49
48 21 0.21
49 2 0.02
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (46 bp):
AAATATTTCAAATATATATTTAAAATTTTAAAAATATATATTAATA
Found at i:179882 original size:25 final size:24
Alignment explanation
Indices: 179843--179914 Score: 78
Period size: 23 Copynumber: 3.0 Consensus size: 24
179833 AAGTAATTTC
179843 AAATATATATTTAAAAT-TTTAAA
1 AAATATATATTTAAAATATTTAAA
*
179866 AAATATATATTAATAAAATATTT--T
1 AAATATATATT--TAAAATATTTAAA
*
179890 AAATATATATTTCAAAATTTTTAAA
1 AAATATATATTT-AAAATATTTAAA
179915 GTTAATAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
22 1 0.03
23 19 0.47
24 11 0.28
25 6 0.15
26 3 0.08
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (24 bp):
AAATATATATTTAAAATATTTAAA
Found at i:179887 original size:34 final size:34
Alignment explanation
Indices: 179796--179893 Score: 101
Period size: 33 Copynumber: 2.8 Consensus size: 34
179786 AAAATATTTC
179796 AAATATATATTAAAAAAATAATATTTAAAATTTTAAA
1 AAATATATATT--AAAAA-AATATTTAAAATTTTAAA
* * *
179833 AAGTA-AT-TTCAAATATATATTTAAAATTTTAAA
1 AAATATATATT-AAAAAAATATTTAAAATTTTAAA
* *
179866 AAATATATATTAATAAAATATTTTAAAT
1 AAATATATATTAAAAAAATATTTAAAAT
179894 ATATATTTCA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
33 21 0.42
34 19 0.38
35 4 0.08
36 2 0.04
37 4 0.08
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (34 bp):
AAATATATATTAAAAAAATATTTAAAATTTTAAA
Found at i:179927 original size:47 final size:47
Alignment explanation
Indices: 179741--179929 Score: 162
Period size: 47 Copynumber: 4.0 Consensus size: 47
179731 TTGCAAAATT
* *
179741 AAAT-TTTCAAAATATGTATTTAAAATTTT-AAAAATATATATTAATA
1 AAATATTTC-AAATATATATTTAAAATTTTAAAAAATATATAATAATA
* *
179787 AAATATTTCAAATATATA-TTAAAA----AAATAATATTTAA-AATTTTAA
1 AAATATTTCAAATATATATTTAAAATTTTAAAAAATATATAATAA---T-A
*
179832 AAAGTAATTTCAAATATATATTTAAAATTTTAAAAAATATATATTAATA
1 AAA-T-ATTTCAAATATATATTTAAAATTTTAAAAAATATATAATAATA
* * **
179881 AAATATTTTAAATATATATTTCAAAATTTTTAAAGTTA-ATAATAATA
1 AAATATTTCAAATATATATTT-AAAATTTTAAAAAATATATAATAATA
179928 AA
1 AA
179930 TTAATAAAAT
Statistics
Matches: 116, Mismatches: 12, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
41 2 0.02
42 9 0.08
44 1 0.01
45 10 0.09
46 13 0.11
47 44 0.38
48 20 0.17
49 4 0.03
50 1 0.01
52 10 0.09
53 2 0.02
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (47 bp):
AAATATTTCAAATATATATTTAAAATTTTAAAAAATATATAATAATA
Found at i:179980 original size:15 final size:14
Alignment explanation
Indices: 179935--179982 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
179925 ATAAATTAAT
*
179935 AAAATAAAATAAAA
1 AAAACAAAATAAAA
*
179949 AAAGACAAAACATAAA
1 AAA-ACAAAATA-AAA
179965 AAAACAAAAGTAAAA
1 AAAACAAAA-TAAAA
179980 AAA
1 AAA
179983 GTAAAAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 3 0.11
15 18 0.64
16 7 0.25
ACGTcount: A:0.81, C:0.06, G:0.04, T:0.08
Consensus pattern (14 bp):
AAAACAAAATAAAA
Found at i:179980 original size:22 final size:21
Alignment explanation
Indices: 179935--179990 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
179925 ATAAATTAAT
179935 AAAATAAAATAAAAAAAGACAA
1 AAAATAAAA-AAAAAAAGACAA
*
179957 AACATAAAAAAACAAAAGTA-AA
1 AAAATAAAAAAA-AAAAG-ACAA
179979 AAAAGTAAAAAA
1 AAAA-TAAAAAA
179991 GTAAGGGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 3 0.10
22 18 0.62
23 8 0.28
ACGTcount: A:0.80, C:0.05, G:0.05, T:0.09
Consensus pattern (21 bp):
AAAATAAAAAAAAAAAGACAA
Found at i:205554 original size:49 final size:49
Alignment explanation
Indices: 205492--205591 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
205482 TTTATAAAGT
205492 TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC
1 TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC
*
205541 TAAACTAATTTTATTGGCATCTTAATAATATCAAAATAATATTTACTAC
1 TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC
205590 TA
1 TA
205592 TGAAAGTTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (49 bp):
TAAACTAATTTTATTGGCATCTCAATAATATCAAAATAATATTTACTAC
Found at i:211752 original size:8 final size:8
Alignment explanation
Indices: 211739--211766 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
211729 TAGGTCATTT
211739 AGCTCCAA
1 AGCTCCAA
211747 AGCTCCAA
1 AGCTCCAA
211755 AGCTCCAA
1 AGCTCCAA
211763 AGCT
1 AGCT
211767 TATCATTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (8 bp):
AGCTCCAA
Found at i:216906 original size:543 final size:545
Alignment explanation
Indices: 215874--216969 Score: 2133
Period size: 543 Copynumber: 2.0 Consensus size: 545
215864 TGCTGCTGCT
215874 GCTTTATGTATGTATGTATAAAATCCATAACAGATTAACAGAAGATTTTATATTATACAACAGAT
1 GCTTTATGTATGTATGTATAAAATCCATAACAGATTAACAGAAGATTTTATATTATACAACAGAT
215939 AGACACAACAATACAAAAAAAGCGTAAGCATGACATAGAATACACAAATTAACATATATGAGCAC
66 AGACACAACAATACAAAAAAAGCGTAAGCATGACATAGAATACACAAATTAACATATATGAGCAC
*
216004 CATCTGGATCTTGTAATGAAAATATGGAAAGTGAAGCTTAGCTTAGCTGATCCATTAGGAATAAT
131 CATCTGGATCTTGTAATGAAAATATGGAAAGTGAAGC-T--CTTAGCTGATCCATAAGGAATAAT
216069 GGAAATAAAAAATCAATAGCTTGACCCAGACCAGAAACAATTTGCTCCTGTCCAAATTTCCCAGG
193 GGAAATAAAAAATCAATAGCTTGACCCAGACCAGAAACAATTTGCTCCTGTCCAAATTTCCCAGG
216134 TGCCATAGATACGTCCTAAATTCAATCACTACCTTTCTACTGTGGATGGATCTACAAAACCAAAT
258 TGCCATAGATACGTCCTAAATTCAATCACTACCTTTCTACTGTGGATGGATCTACAAAACCAAAT
216199 CAAAATTCCCACTTGTTACTGCTCAGGATTTTCTACCTCGGCCTCGGCTTCGTCCATACGAAGCC
323 CAAAATTCCCACTTGTTACTGCTCAGGATTTTCTACCTCGGCCTCGGCTTCGTCCATACGAAGCC
216264 TTTTCGGACTTGATTTCAGTTTACAATCCTCCACATTGGGAGCTTTATACTTTGATGGTAGAGAT
388 TTTTCGGACTTGATTTCAGTTTACAATCCTCCACATTGGGAGCTTTATACTTTGATGGTAGAGAT
216329 GTTGGTGACTCGGTTTTGGACTCACAAGGCTCGGTTTCTGATGCAATCCTTGATGGCAGTTCGGA
453 GTTGGTGACTCGGTTTTGGACTCACAAGGCTCGGTTTCTGATGCAATCCTTGATGGCAGTTCGGA
216394 GTTTGGGTTCGGAACTAAGGCATTGCCA
518 GTTTGGGTTCGGAACTAAGGCATTGCCA
216422 GCTTTATGTATGTATGTATAAAATCCATAACAGATTAACAGAAGATTTTATATTATACAACAGAT
1 GCTTTATGTATGTATGTATAAAATCCATAACAGATTAACAGAAGATTTTATATTATACAACAGAT
216487 AGACACAACAATACAAAAAAAGCGTAAGCATGACATAGAATACACAAATTAACATATATGAGCAC
66 AGACACAACAATACAAAAAAAGCGTAAGCATGACATAGAATACACAAATTAACATATATGAGCAC
*
216552 CATTTGGATCTTGTAATGAAAATATGGAAAGTGAA-C-CTTAGCTGATCCATAAGGAATAATGGA
131 CATCTGGATCTTGTAATGAAAATATGGAAAGTGAAGCTCTTAGCTGATCCATAAGGAATAATGGA
216615 AATAAAAAATCAATAGCTTGACCCAGACCAGAAACAATTTGCTCCTGTCCAAATTTCCCAGGTGC
196 AATAAAAAATCAATAGCTTGACCCAGACCAGAAACAATTTGCTCCTGTCCAAATTTCCCAGGTGC
216680 CATAGATACGTCCTAAATTCAATCACTACCTTTCTACTGTGGATGGATCTACAAAACCAAATCAA
261 CATAGATACGTCCTAAATTCAATCACTACCTTTCTACTGTGGATGGATCTACAAAACCAAATCAA
216745 AATTCCCACTTGTTACTGCTCAGGATTTTCTACCTCGGCCTCGGCTTCGTCCATACGAAGCCTTT
326 AATTCCCACTTGTTACTGCTCAGGATTTTCTACCTCGGCCTCGGCTTCGTCCATACGAAGCCTTT
216810 TCGGACTTGATTTCAGTTTACAATCCTCCACATTGGGAGCTTTATACTTTGATGGTAGAGATGTT
391 TCGGACTTGATTTCAGTTTACAATCCTCCACATTGGGAGCTTTATACTTTGATGGTAGAGATGTT
216875 GGTGACTCGGTTTTGGACTCACAAGGCTCGGTTTCTGATGCAATCCTTGATGGCAGTTCGGAGTT
456 GGTGACTCGGTTTTGGACTCACAAGGCTCGGTTTCTGATGCAATCCTTGATGGCAGTTCGGAGTT
216940 TGGGTTCGGAACTAAGGCATTGCCA
521 TGGGTTCGGAACTAAGGCATTGCCA
216965 GCTTT
1 GCTTT
216970 CTGCTGTTCC
Statistics
Matches: 546, Mismatches: 2, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
543 381 0.70
547 1 0.00
548 164 0.30
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (545 bp):
GCTTTATGTATGTATGTATAAAATCCATAACAGATTAACAGAAGATTTTATATTATACAACAGAT
AGACACAACAATACAAAAAAAGCGTAAGCATGACATAGAATACACAAATTAACATATATGAGCAC
CATCTGGATCTTGTAATGAAAATATGGAAAGTGAAGCTCTTAGCTGATCCATAAGGAATAATGGA
AATAAAAAATCAATAGCTTGACCCAGACCAGAAACAATTTGCTCCTGTCCAAATTTCCCAGGTGC
CATAGATACGTCCTAAATTCAATCACTACCTTTCTACTGTGGATGGATCTACAAAACCAAATCAA
AATTCCCACTTGTTACTGCTCAGGATTTTCTACCTCGGCCTCGGCTTCGTCCATACGAAGCCTTT
TCGGACTTGATTTCAGTTTACAATCCTCCACATTGGGAGCTTTATACTTTGATGGTAGAGATGTT
GGTGACTCGGTTTTGGACTCACAAGGCTCGGTTTCTGATGCAATCCTTGATGGCAGTTCGGAGTT
TGGGTTCGGAACTAAGGCATTGCCA
Found at i:223093 original size:22 final size:24
Alignment explanation
Indices: 223050--223094 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
223040 TTACATTTTA
*
223050 TTTTATTTTATAATCATGAATATT
1 TTTTATTTTAAAATCATGAATATT
*
223074 TTTTGTTTTAAAAT-AT-AATAT
1 TTTTATTTTAAAATCATGAATAT
223095 CAACAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 2 0.11
24 12 0.63
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (24 bp):
TTTTATTTTAAAATCATGAATATT
Found at i:228055 original size:11 final size:11
Alignment explanation
Indices: 228039--228064 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
228029 TTTGTCTAGT
228039 GGTGTGCTGAA
1 GGTGTGCTGAA
228050 GGTGTGCTGAA
1 GGTGTGCTGAA
228061 GGTG
1 GGTG
228065 GTAGGCTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.50, T:0.27
Consensus pattern (11 bp):
GGTGTGCTGAA
Found at i:230588 original size:18 final size:18
Alignment explanation
Indices: 230565--230600 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
230555 ACTTTCTTAG
230565 CTTCCATAATAGATGTTT
1 CTTCCATAATAGATGTTT
230583 CTTCCATAATAGATGTTT
1 CTTCCATAATAGATGTTT
230601 ATGATTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
CTTCCATAATAGATGTTT
Found at i:237967 original size:22 final size:21
Alignment explanation
Indices: 237921--237969 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
237911 CCTCAAATTC
237921 CTATTTTAATTGCTTTTTTCT
1 CTATTTTAATTGCTTTTTTCT
* *
237942 -TATTTTAATTAGTTTTTTTTT
1 CTATTTTAATT-GCTTTTTTCT
237963 CTATTTT
1 CTATTTT
237970 GGTTGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.42
21 8 0.33
22 6 0.25
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.71
Consensus pattern (21 bp):
CTATTTTAATTGCTTTTTTCT
Found at i:241979 original size:21 final size:21
Alignment explanation
Indices: 241955--242007 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
241945 CATTGTTTTT
*
241955 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
241976 AATCTCACTGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
241997 AATCTCACCGC
1 AATCTCACCGC
242008 CACCGCTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:243148 original size:10 final size:10
Alignment explanation
Indices: 243133--243158 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
243123 AGCTTCTCAT
243133 GAATTTACAA
1 GAATTTACAA
243143 GAATTTACAA
1 GAATTTACAA
243153 GAATTT
1 GAATTT
243159 GATGCACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (10 bp):
GAATTTACAA
Found at i:243364 original size:3 final size:3
Alignment explanation
Indices: 243356--243409 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
243346 AGAACAGAAC
* * * * *
243356 TCA TCA TCA TCA TCA TCA TCT TCA TCT TCA TCT TCA TCT TCA TCT TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
243404 TCA TCA
1 TCA TCA
243410 CCCAATTGTT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.43
Consensus pattern (3 bp):
TCA
Found at i:243367 original size:6 final size:6
Alignment explanation
Indices: 243359--243405 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
243349 ACAGAACTCA
* *
243359 TCATCA TCATCA TCATCT TCATCT TCATCT TCATCT TCATCT TCATC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATC
243406 ATCACCCAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.21, C:0.34, G:0.00, T:0.45
Consensus pattern (6 bp):
TCATCT
Found at i:243373 original size:12 final size:12
Alignment explanation
Indices: 243356--243409 Score: 81
Period size: 12 Copynumber: 4.5 Consensus size: 12
243346 AGAACAGAAC
*
243356 TCATCATCATCA
1 TCATCATCTTCA
243368 TCATCATCTTCA
1 TCATCATCTTCA
*
243380 TCTTCATCTTCA
1 TCATCATCTTCA
*
243392 TCTTCATCTTCA
1 TCATCATCTTCA
243404 TCATCA
1 TCATCA
243410 CCCAATTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.43
Consensus pattern (12 bp):
TCATCATCTTCA
Found at i:243386 original size:18 final size:18
Alignment explanation
Indices: 243359--243409 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
243349 ACAGAACTCA
*
243359 TCATCATCATCATCATCT
1 TCATCTTCATCATCATCT
*
243377 TCATCTTCATCTTCATCT
1 TCATCTTCATCATCATCT
243395 TCATCTTCATCATCA
1 TCATCTTCATCATCA
243410 CCCAATTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.43
Consensus pattern (18 bp):
TCATCTTCATCATCATCT
Found at i:247167 original size:30 final size:31
Alignment explanation
Indices: 247113--247174 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 31
247103 TGGGGTGATT
*
247113 TGATAAAAAAATATAAATTTAAGGACTACAAA
1 TGATAAAAAAATATAAATTAAAGGACTA-AAA
247145 TGATAAAAAAAT-TAAA-TAAAGGACTAAAA
1 TGATAAAAAAATATAAATTAAAGGACTAAAA
247174 T
1 T
247175 AAAAATTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 4 0.14
30 9 0.31
31 4 0.14
32 12 0.41
ACGTcount: A:0.61, C:0.05, G:0.10, T:0.24
Consensus pattern (31 bp):
TGATAAAAAAATATAAATTAAAGGACTAAAA
Found at i:269855 original size:15 final size:15
Alignment explanation
Indices: 269832--269866 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
269822 CCCTCCATCC
*
269832 GATCCCTCGCATTTA
1 GATCTCTCGCATTTA
*
269847 GATCTCTCGGATTTA
1 GATCTCTCGCATTTA
269862 GATCT
1 GATCT
269867 GACCATAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (15 bp):
GATCTCTCGCATTTA
Found at i:283141 original size:7 final size:8
Alignment explanation
Indices: 283098--283122 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
283088 ATAGAATTTC
283098 ATATTTTT
1 ATATTTTT
283106 ATATTTTT
1 ATATTTTT
283114 ATATTTTT
1 ATATTTTT
283122 A
1 A
283123 AAATGCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
ATATTTTT
Found at i:300133 original size:4 final size:4
Alignment explanation
Indices: 300126--300164 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
300116 AATGAATGAT
* * *
300126 TAAC TAAC TAAC TAAC AAAC AAAC TAAC AAAC TAAC TAA
1 TAAC TAAC TAAC TAAC TAAC TAAC TAAC TAAC TAAC TAA
300165 TATATCCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.59, C:0.23, G:0.00, T:0.18
Consensus pattern (4 bp):
TAAC
Found at i:310460 original size:37 final size:35
Alignment explanation
Indices: 310385--310460 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
310375 ATCATTGTGC
* * * *
310385 CTTCATGTATTTTGTTGTGTTACTCTTGATCGTGT
1 CTTCATATAGTTTGTTGTGTTACCCTTGATCGTAT
*
310420 CTTCATATAGTTTGTTGTGCATTACCCTTGATTGTAT
1 CTTCATATAGTTTGTTGTG--TTACCCTTGATCGTAT
310457 CTTC
1 CTTC
310461 CTTAATCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 17 0.50
37 17 0.50
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.51
Consensus pattern (35 bp):
CTTCATATAGTTTGTTGTGTTACCCTTGATCGTAT
Found at i:314171 original size:25 final size:26
Alignment explanation
Indices: 314131--314180 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
314121 TTGGACTTAT
* * *
314131 TTGATCCTTTTTAATAGTATAGGGAA
1 TTGATCCTATTTAATAATAGAGGGAA
314157 TTGATCC-ATTTAATAATAGAGGGA
1 TTGATCCTATTTAATAATAGAGGGA
314181 CTAATTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (26 bp):
TTGATCCTATTTAATAATAGAGGGAA
Found at i:316666 original size:71 final size:71
Alignment explanation
Indices: 316459--316745 Score: 377
Period size: 71 Copynumber: 4.1 Consensus size: 71
316449 ATCGAATATG
* * * * *
316459 ATATTTTAAACATG-TAAAAAATTTAAAACTT-TTAAAATTTATTTAAACCAATCACACATTTAA
1 ATATATTAAACATGCAAAAAAATTAAAAACTTATT-AAATTTATTCAAACCAATCACACATTTTA
316522 AATATTT
65 AATATTT
* * *
316529 ATATATTAAACATGCAAAAAAATTAAAAAC--ATTAAATTTATTTATACCGATCACACATTTTAA
1 ATATATTAAACATGCAAAAAAATTAAAAACTTATTAAATTTATTCAAACCAATCACACATTTTAA
316592 ATATTT
66 ATATTT
* * *
316598 ATATATTAAACATGCAAAAAAATTAAAAAACTTATTGAATTTATTCATA-CAATCGCACATTTTA
1 ATATATTAAACATGCAAAAAAATT-AAAAACTTATTAAATTTATTCAAACCAATCACACATTTTA
316662 AATATTT
65 AATATTT
* * * *
316669 ATATATTAAACATACAAAAAATTTAAAAACTTATTAAATTTATTCAAACTAAGCACACATTTTAA
1 ATATATTAAACATGCAAAAAAATTAAAAACTTATTAAATTTATTCAAACCAATCACACATTTTAA
316734 ATATTT
66 ATATTT
*
316740 GTATAT
1 ATATAT
316746 ACATACATAC
Statistics
Matches: 193, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
69 57 0.30
70 43 0.22
71 79 0.41
72 14 0.07
ACGTcount: A:0.49, C:0.11, G:0.03, T:0.38
Consensus pattern (71 bp):
ATATATTAAACATGCAAAAAAATTAAAAACTTATTAAATTTATTCAAACCAATCACACATTTTAA
ATATTT
Found at i:322402 original size:17 final size:18
Alignment explanation
Indices: 322382--322416 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
322372 TTTTCCAAGA
322382 ATAAT-TTAATTTTTTAT
1 ATAATGTTAATTTTTTAT
*
322399 ATAATGTTCATTTTTTAT
1 ATAATGTTAATTTTTTAT
322417 CCATAATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
ATAATGTTAATTTTTTAT
Found at i:325805 original size:106 final size:108
Alignment explanation
Indices: 325670--325977 Score: 338
Period size: 112 Copynumber: 2.8 Consensus size: 108
325660 ACACAATTCA
*
325670 TTAACTTATCCAAAGTTCTATAAATATAAAATACCTTAAGC-ACAATACGAGAAGATACACAAAT
1 TTAACTTATCAAAAGTTCTATAAATATAAAATACCTTAAGCAACAATACGAGAAGATACACAAAT
*
325734 ACGAAAAGAATACATGTAT-ATCCAAATAAATCCAATCCACTG
66 ACGAAAAGAATACATGTATAAACCAAATAAATCCAATCCACTG
* * * * *
325776 TTAACTTATCAAAAGTTCTATAAATATAAAATATCGTAAGTACGAATATTATACGA-AAAATATA
1 TTAACTTATCAAAAGTTCTATAAATATAAAATACCTTAAG--C-AACA--ATACGAGAAGATACA
* * * *
325840 CAAATACAAAAAGAATACATATATAAACCAAGTAAATCCAATCGACTG
61 CAAATACGAAAAGAATACATGTATAAACCAAATAAATCCAATCCACTG
* * * * *
325888 TTAACTTATCAAAAGTTGTA-AAACATAGAATACCTTAAGCGCAATTACAACACGAGAAGATGCA
1 TTAACTTATCAAAAGTTCTATAAATATAAAATACCTTAA--GC-A--ACAATACGAGAAGATACA
325952 CAAATACGAAAAAGAATACATG-ATAA
61 CAAATACG-AAAAGAATACATGTATAA
325978 GTTCTATAAA
Statistics
Matches: 165, Mismatches: 24, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
106 37 0.22
108 1 0.01
110 2 0.01
111 49 0.30
112 61 0.37
113 15 0.09
ACGTcount: A:0.50, C:0.16, G:0.10, T:0.24
Consensus pattern (108 bp):
TTAACTTATCAAAAGTTCTATAAATATAAAATACCTTAAGCAACAATACGAGAAGATACACAAAT
ACGAAAAGAATACATGTATAAACCAAATAAATCCAATCCACTG
Found at i:331105 original size:22 final size:22
Alignment explanation
Indices: 331080--331145 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
331070 GACTTTATAT
331080 TATATTTTTTAATTATTTAAAA
1 TATATTTTTTAATTATTTAAAA
*
331102 TATA-TTTTTAA-TATATAATAA
1 TATATTTTTTAATTATTTAA-AA
*
331123 -ATATTTTTTTAATGATTTAAAA
1 TATA-TTTTTTAATTATTTAAAA
331145 T
1 T
331146 TTGATTCGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
20 9 0.25
21 9 0.25
22 13 0.36
23 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TATATTTTTTAATTATTTAAAA
Found at i:333104 original size:24 final size:23
Alignment explanation
Indices: 333077--333142 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 23
333067 TTTATGTTAG
333077 ATTAAAAACTAAACTAGTCTTTCT
1 ATTAAAAA-TAAACTAGTCTTTCT
* * *
333101 ATTAAAAAT-TACATA-TATTTTT
1 ATTAAAAATAAAC-TAGTCTTTCT
333123 ATTAAAAATAAACTTAGTCT
1 ATTAAAAATAAAC-TAGTCT
333143 AATATTGTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
22 16 0.48
23 7 0.21
24 10 0.30
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (23 bp):
ATTAAAAATAAACTAGTCTTTCT
Found at i:344783 original size:78 final size:78
Alignment explanation
Indices: 344616--344775 Score: 232
Period size: 78 Copynumber: 2.1 Consensus size: 78
344606 TTGTGTTATT
* **
344616 TTTGCATATTTTCATGTTATAGTAGTGTTAAAGGTGTTTTACATTTGGTATAAAGCTCGATATTT
1 TTTGTATATTTTCATGTTATAGTAGTGTTAAAGGTGTTTTACATTTGGTATAAAGCTCGATATCG
344681 GATAATTAGTACA
66 GATAATTAGTACA
* * * * *
344694 TTTGTATATTTTCATGTTATAGTAGTGTTAAAGGTGTTTTGCATTT-GTTTAAAGTTTGATGTCG
1 TTTGTATATTTTCATGTTATAGTAGTGTTAAAGGTGTTTTACATTTGGTATAAAGCTCGATATCG
*
344758 GATACTTAGTACA
66 GATAATTAGTACA
344771 TTTGT
1 TTTGT
344776 GTTATTTTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 29 0.40
78 44 0.60
ACGTcount: A:0.26, C:0.07, G:0.19, T:0.47
Consensus pattern (78 bp):
TTTGTATATTTTCATGTTATAGTAGTGTTAAAGGTGTTTTACATTTGGTATAAAGCTCGATATCG
GATAATTAGTACA
Found at i:346330 original size:21 final size:21
Alignment explanation
Indices: 346304--346345 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
346294 TTGATTTGTT
346304 AATTTTATGCGAAATTGATCA
1 AATTTTATGCGAAATTGATCA
346325 AATTTTATGCGAAATTGATCA
1 AATTTTATGCGAAATTGATCA
346346 TGAATTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
AATTTTATGCGAAATTGATCA
Found at i:349901 original size:22 final size:22
Alignment explanation
Indices: 349875--349919 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
349865 TTTTAATAAA
349875 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
349897 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
349919 A
1 A
349920 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:353673 original size:22 final size:22
Alignment explanation
Indices: 353647--353691 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
353637 TTTTAATAAA
353647 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
353669 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
353691 A
1 A
353692 CATAATCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:360828 original size:23 final size:23
Alignment explanation
Indices: 360785--360828 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
360775 TGTGTAAAAT
*
360785 AAATAAATTCATTTTTCAAAACC
1 AAATAAATTCAATTTTCAAAACC
360808 AAATAAATTCAAATTTT-AAAA
1 AAATAAATTC-AATTTTCAAAA
360829 TAATTATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATAAATTCAATTTTCAAAACC
Found at i:360926 original size:9 final size:9
Alignment explanation
Indices: 360880--360934 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 9
360870 CAATATTTAG
360880 TTTCAAATT
1 TTTCAAATT
**
360889 TGACAAATT
1 TTTCAAATT
*
360898 TTTCACATT
1 TTTCAAATT
* *
360907 TTTTAATTT
1 TTTCAAATT
360916 TTTCAAATT
1 TTTCAAATT
*
360925 TTACAAATT
1 TTTCAAATT
360934 T
1 T
360935 GACAATTCTT
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.55
Consensus pattern (9 bp):
TTTCAAATT
Found at i:367612 original size:18 final size:18
Alignment explanation
Indices: 367582--367616 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
367572 TAAAGGTGTT
367582 TATAATAAAATTAAAATG
1 TATAATAAAATTAAAATG
367600 TATAA-AAATATTAAAAT
1 TATAATAAA-ATTAAAAT
367617 AAAATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
TATAATAAAATTAAAATG
Found at i:391224 original size:22 final size:20
Alignment explanation
Indices: 391194--391235 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
391184 ACAATTTGTA
391194 AATAATAAATTTATATATTAAT
1 AATAATAAA--TATATATTAAT
*
391216 AATATTAAATATATATTAAT
1 AATAATAAATATATATTAAT
391236 TTTATTTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
22 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAATAAATATATATTAAT
Found at i:404782 original size:18 final size:17
Alignment explanation
Indices: 404744--404805 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 17
404734 CGAAAGGGAG
404744 AGGGAAAGAGAAGAG--
1 AGGGAAAGAGAAGAGAA
404759 AGGGAAAGAGAGAGAGAA
1 AGGGAAAGAGA-AGAGAA
* *
404777 AGGGAAAGGGAAAGGGAA
1 AGGGAAAGAG-AAGAGAA
*
404795 AGAGAAAGAGA
1 AGGGAAAGAGA
404806 TTTCAATGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
15 11 0.28
16 4 0.10
17 1 0.03
18 22 0.56
19 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (17 bp):
AGGGAAAGAGAAGAGAA
Found at i:404783 original size:6 final size:6
Alignment explanation
Indices: 404735--404802 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
404725 GGAAGAAGAC
* * * * *
404735 GAAAGG GAGAGG GAAAGAG AAGAGAGG GAAAGA GAGAGA GAAAGG GAAAGG
1 GAAAGG GAAAGG GAAAG-G --GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG
*
404786 GAAAGG GAAAGA GAAAG
1 GAAAGG GAAAGG GAAAG
404803 AGATTTCAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
6 44 0.88
7 1 0.02
8 1 0.02
9 4 0.08
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (6 bp):
GAAAGG
Found at i:416852 original size:17 final size:17
Alignment explanation
Indices: 416832--416865 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
416822 AAAGTAATTT
* *
416832 ATTGTATAAAATAATAA
1 ATTGAATAAAAAAATAA
416849 ATTGAATAAAAAAATAA
1 ATTGAATAAAAAAATAA
416866 TATTTAATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
ATTGAATAAAAAAATAA
Found at i:419821 original size:6 final size:6
Alignment explanation
Indices: 419812--419839 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
419802 TAAATATAAA
419812 AATTTT AATTTT AATTTT AATTTT AATT
1 AATTTT AATTTT AATTTT AATTTT AATT
419840 AAAGAGTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:429444 original size:25 final size:25
Alignment explanation
Indices: 429414--429463 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
429404 ATGAGTAAAC
429414 AAATAAACTCAAGCTCTTCTTTCTT
1 AAATAAACTCAAGCTCTTCTTTCTT
429439 AAATAAACTCAAGCTCTTCTTTCTT
1 AAATAAACTCAAGCTCTTCTTTCTT
429464 TTTTTGCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (25 bp):
AAATAAACTCAAGCTCTTCTTTCTT
Found at i:431629 original size:30 final size:31
Alignment explanation
Indices: 431595--431655 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
431585 TTTTGTGATA
*
431595 AATATTAAATTT-ATACAT-AATCTTTGATTT
1 AATATGAAATTTAATACATAAAT-TTTGATTT
* *
431625 AATATGCAATTTAATACGTAAATTTTGATTT
1 AATATGAAATTTAATACATAAATTTTGATTT
431656 GATGCAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 10 0.38
31 13 0.50
32 3 0.12
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (31 bp):
AATATGAAATTTAATACATAAATTTTGATTT
Found at i:433420 original size:38 final size:39
Alignment explanation
Indices: 433336--433470 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
433326 ACCAATATGG
*
433336 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
433375 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
433413 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
433454 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
433471 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:435048 original size:5 final size:5
Alignment explanation
Indices: 435032--435072 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
435022 TTTATTTTAT
435032 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA
435073 CTTAATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:438176 original size:31 final size:31
Alignment explanation
Indices: 438124--438182 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
438114 TTAAAGGAGC
* * *
438124 AAATTAAAATTTTCAACAAATTTCAAGAAAA
1 AAATAAAAAATTTCAAAAAATTTCAAGAAAA
*
438155 AAATAAAAAATTTCAAAAAATTTGAAGA
1 AAATAAAAAATTTCAAAAAATTTCAAGA
438183 CCAAGATCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (31 bp):
AAATAAAAAATTTCAAAAAATTTCAAGAAAA
Done.