Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 101 of 343
Found at i:33780271 original size:9 final size:9
Alignment explanation
Indices: 33780252--33780282 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
33780242 ATGCAATGCT
33780252 AATGC-ATG
1 AATGCGATG
33780260 AATGCGATG
1 AATGCGATG
33780269 AATGCGATG
1 AATGCGATG
33780278 AATGC
1 AATGC
33780283 AAAAAAACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (9 bp):
AATGCGATG
Found at i:33785253 original size:55 final size:55
Alignment explanation
Indices: 33785185--33785319 Score: 186
Period size: 55 Copynumber: 2.5 Consensus size: 55
33785175 CTTGCCCTTA
*
33785185 ACCCGTGTG-CAACACTGACTTTAAAACACGGCCATGACACATGCCCGTATGGCCT
1 ACCCGTG-GACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTATGGCCT
* *
33785240 ACCCGTGGACAACACTAACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
1 ACCCGTGGACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTATGGCCT
* *
33785295 GCCCGTGTACTAA-ACTGAC-TTAAAA
1 ACCCGTGGAC-AACACTGACTTTAAAA
33785320 TTTTAAGTGC
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
54 7 0.10
55 63 0.88
56 2 0.03
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.19
Consensus pattern (55 bp):
ACCCGTGGACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTATGGCCT
Found at i:33786304 original size:93 final size:93
Alignment explanation
Indices: 33786151--33786326 Score: 255
Period size: 93 Copynumber: 1.9 Consensus size: 93
33786141 AAGACTCTTA
* * *
33786151 GTCGATGCATGTCCCAGACACGTCTTACATTGGCTATCATTATCGAGACCGATGCATGTCCCAGA
1 GTCGATGCATGTCCCAGACACGTCTTACACTGGCCATCATAATCGAGACCGATGCATGTCCCAGA
33786216 CATGTCCTACACTGGCACTCATCTCTAC
66 CATGTCCTACACTGGCACTCATCTCTAC
* * * *
33786244 GTCGATGCCATGTCCCAGACATGTCTTACACTGGCCCTCATAAT-GTGGCCGATGCATGTCCCAG
1 GTCGATG-CATGTCCCAGACACGTCTTACACTGGCCATCATAATCGAGACCGATGCATGTCCCAG
* *
33786308 ACATGTCTTATACTGGCAC
65 ACATGTCCTACACTGGCAC
33786327 ACAAAAAATC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 42 0.58
94 31 0.42
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (93 bp):
GTCGATGCATGTCCCAGACACGTCTTACACTGGCCATCATAATCGAGACCGATGCATGTCCCAGA
CATGTCCTACACTGGCACTCATCTCTAC
Found at i:33786317 original size:46 final size:45
Alignment explanation
Indices: 33786153--33786326 Score: 188
Period size: 47 Copynumber: 3.8 Consensus size: 45
33786143 GACTCTTAGT
* * * *
33786153 CGATGCATGTCCCAGACACGTCTTACATTGGCTA-TCATTATCGAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCA-TAT-GTGGC
* * * * *
33786200 CGATGCATGTCCCAGACATGTCCTACACTGGCACTCATCTCTACGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATGT-GGC
*
33786246 CGATGCCATGTCCCAGACATGTCTTACACTGGCCCTCATAATGTGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTGGCACTCAT-ATGTGGC
*
33786293 CGATGCATGTCCCAGACATGTCTTATACTGGCAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCAC
33786327 ACAAAAAATC
Statistics
Matches: 106, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
46 35 0.33
47 69 0.65
48 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATGTGGC
Found at i:33801207 original size:12 final size:12
Alignment explanation
Indices: 33801190--33801216 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33801180 GAATAAATTG
33801190 ATTTTCTAATCA
1 ATTTTCTAATCA
33801202 ATTTTCTAATCA
1 ATTTTCTAATCA
33801214 ATT
1 ATT
33801217 GCTAGGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTCTAATCA
Found at i:33803043 original size:21 final size:22
Alignment explanation
Indices: 33803017--33803058 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
33803007 TATTTTTAAA
33803017 AAATATT-TAAATTTT-AATATC
1 AAATATTAT-AATTTTCAATATC
33803038 AAATATTATAATTTTCAATAT
1 AAATATTATAATTTTCAATAT
33803059 TATTAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATATTATAATTTTCAATATC
Found at i:33803325 original size:28 final size:30
Alignment explanation
Indices: 33803294--33803357 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 30
33803284 ATAACTTTAA
* *
33803294 ATTAAATTTTA-ATTAAATATTATC-TATT
1 ATTAAATTCTATATAAAATATTATCTTATT
*
33803322 ATT-AAGTCTATATAAAATATTATCTTATT
1 ATTAAATTCTATATAAAATATTATCTTATT
*
33803351 ATAAAAT
1 ATTAAAT
33803358 AAATTTTGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
27 5 0.18
28 15 0.54
29 6 0.21
30 2 0.07
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (30 bp):
ATTAAATTCTATATAAAATATTATCTTATT
Found at i:33804561 original size:31 final size:31
Alignment explanation
Indices: 33804523--33804581 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
33804513 CAAATGATAG
33804523 TTAATAAAAAATAAATCACAATTTAATTTTT
1 TTAATAAAAAATAAATCACAATTTAATTTTT
* * *
33804554 TTAATAAATAATAATTCACGATTTAATT
1 TTAATAAAAAATAAATCACAATTTAATT
33804582 GTTAAAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (31 bp):
TTAATAAAAAATAAATCACAATTTAATTTTT
Found at i:33805070 original size:51 final size:52
Alignment explanation
Indices: 33804981--33805083 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 52
33804971 GTAAGAAAAA
33804981 GAGAATAACTTATGGAAAAGAAGGAAGGAGACACTTATTATTCATTTTCATT
1 GAGAATAACTTATGGAAAAGAAGGAAGGAGACACTTATTATTCATTTTCATT
*
33805033 GAGAATAACTTATGG-AAAGAAGGAAGGAGACATTTATTATTCATTTTCATT
1 GAGAATAACTTATGGAAAAGAAGGAAGGAGACACTTATTATTCATTTTCATT
33805084 TTAGAAAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 35 0.70
52 15 0.30
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (52 bp):
GAGAATAACTTATGGAAAAGAAGGAAGGAGACACTTATTATTCATTTTCATT
Found at i:33811353 original size:45 final size:45
Alignment explanation
Indices: 33811289--33811376 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
33811279 AAACATGTGC
*
33811289 CACATACATCATGAACTCAGAACATAACTCAATGAGTTCAGATGT
1 CACATACATCATGAACTCAGAACACAACTCAATGAGTTCAGATGT
* *
33811334 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATACATCATGAACTCAGAACACAACTCAATGAGTTCAGAT
33811377 CACATAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAGAACACAACTCAATGAGTTCAGATGT
Found at i:33815038 original size:20 final size:20
Alignment explanation
Indices: 33815015--33815073 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
33815005 AAATGCTAAC
* *
33815015 TAGAGGTACCGTAGTGCAAA
1 TAGAGGCACCGAAGTGCAAA
33815035 TAGAGGCACCGAAGTGCAAA
1 TAGAGGCACCGAAGTGCAAA
* *
33815055 CAGAGGCACCAAAGTGCAA
1 TAGAGGCACCGAAGTGCAA
33815074 TCTTGTACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.29, T:0.12
Consensus pattern (20 bp):
TAGAGGCACCGAAGTGCAAA
Found at i:33816874 original size:49 final size:49
Alignment explanation
Indices: 33816785--33816879 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 49
33816775 GGAGGGCCCG
* * * **
33816785 AGTTATACTTCAACCTGTGACCGCATAGCCACTTTCAACTAGGAGTCCT
1 AGTTATACTTCAACATGTGACCACATAACCACCATCAACTAGGAGTCCT
* * *
33816834 AGTTATATTTCAACATGTGACCATATAACCACCATGAACTAGGAGT
1 AGTTATACTTCAACATGTGACCACATAACCACCATCAACTAGGAGT
33816880 TTAAGTTGCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (49 bp):
AGTTATACTTCAACATGTGACCACATAACCACCATCAACTAGGAGTCCT
Found at i:33821869 original size:34 final size:36
Alignment explanation
Indices: 33821808--33821874 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 36
33821798 TACATAGTAA
*
33821808 TATAAAATAATAAGTGATGATAGTGAAACTAATGGG
1 TATAAAATAATAAGTGATGATAGTGAAAATAATGGG
*
33821844 TATAATAATTATAA-TGAT-ATA-TGAAAATAAT
1 TATAA-AATAATAAGTGATGATAGTGAAAATAAT
33821875 ACTATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 9 0.32
35 3 0.11
36 9 0.32
37 7 0.25
ACGTcount: A:0.51, C:0.01, G:0.15, T:0.33
Consensus pattern (36 bp):
TATAAAATAATAAGTGATGATAGTGAAAATAATGGG
Found at i:33822000 original size:29 final size:28
Alignment explanation
Indices: 33821965--33822024 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
33821955 TGTAATAATG
* * *
33821965 ATATATACACAATATGGTA-TTAAGAAT
1 ATATATATACAATATAGTATTTAAAAAT
33821992 ATATATATACAATATAGTATTTAAAAAT
1 ATATATATACAATATAGTATTTAAAAAT
33822020 ATATA
1 ATATA
33822025 CATAACATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 17 0.59
28 12 0.41
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.37
Consensus pattern (28 bp):
ATATATATACAATATAGTATTTAAAAAT
Found at i:33822034 original size:28 final size:27
Alignment explanation
Indices: 33821965--33822037 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
33821955 TGTAATAATG
* *
33821965 ATATATAC--ACAATATGGTATTAAGA
1 ATATATACATACAATATAGTATTAAAA
*
33821990 ATATATATATACAATATAGTATTTAAAA
1 ATATATACATACAATATAGTA-TTAAAA
33822018 ATATATACATAACATATATA
1 ATATATACAT-ACA-ATATA
33822038 AAACATATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
25 7 0.18
27 10 0.26
28 14 0.36
29 3 0.08
30 5 0.13
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (27 bp):
ATATATACATACAATATAGTATTAAAA
Found at i:33822127 original size:16 final size:17
Alignment explanation
Indices: 33822096--33822130 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
33822086 AACTACTTTG
33822096 TACACTACACAAATATA
1 TACACTACACAAATATA
*
33822113 TACAC-ACACATATATA
1 TACACTACACAAATATA
33822129 TA
1 TA
33822131 AATAATAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (17 bp):
TACACTACACAAATATA
Found at i:33822151 original size:21 final size:21
Alignment explanation
Indices: 33822126--33822237 Score: 106
Period size: 21 Copynumber: 5.2 Consensus size: 21
33822116 ACACACATAT
*
33822126 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAATATTA-AA
33822147 ATATACAAT-ATAATATTAGAA
1 ATATACAATAATAATATTA-AA
*
33822168 ATATACATATAATAGTA-TAAA
1 ATATACA-ATAATAATATTAAA
*
33822189 ATATATAACTAATAATATTAAA
1 ATATACAA-TAATAATATTAAA
*
33822211 ATATA-TATAATAATATATAAAA
1 ATATACAATAATAATAT-T-AAA
33822233 ATATA
1 ATATA
33822238 ATATTGAAAA
Statistics
Matches: 79, Mismatches: 5, Indels: 13
0.81 0.05 0.13
Matches are distributed among these distances:
20 10 0.13
21 40 0.51
22 24 0.30
23 5 0.06
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (21 bp):
ATATACAATAATAATATTAAA
Found at i:33822172 original size:44 final size:43
Alignment explanation
Indices: 33822124--33822237 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 43
33822114 ACACACACAT
33822124 ATATATAAATAATAGTATTAGAAATATACAA-T-ATAATATTAGAA
1 ATATATAAATAATAGTA-TA-AAATATACAACTAATAATATTA-AA
* * *
33822168 ATATACATATAATAGTATAAAATATATAACTAATAATATTAAA
1 ATATATAAATAATAGTATAAAATATACAACTAATAATATTAAA
33822211 ATATATATAATAATA-TATAAAAATATA
1 ATATATA-AATAATAGTAT-AAAATATA
33822238 ATATTGAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
42 9 0.15
43 14 0.23
44 38 0.62
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (43 bp):
ATATATAAATAATAGTATAAAATATACAACTAATAATATTAAA
Found at i:33822205 original size:14 final size:12
Alignment explanation
Indices: 33822184--33822284 Score: 59
Period size: 13 Copynumber: 8.2 Consensus size: 12
33822174 ATATAATAGT
*
33822184 ATAAAATATATA
1 ATAATATATATA
33822196 ACTAATA-ATATTA
1 A-TAATATATA-TA
33822209 A-AATATATATA
1 ATAATATATATA
33822220 ATAATATATA-A
1 ATAATATATATA
33822231 A-AATATAATATTGA
1 ATAATAT-ATA-T-A
*
33822245 A-AACATATATA
1 ATAATATATATA
* *
33822256 CATAACATACATGA
1 -ATAATATATAT-A
*
33822270 AGAATATATATA
1 ATAATATATATA
33822282 ATA
1 ATA
33822285 TAATATTTAA
Statistics
Matches: 71, Mismatches: 7, Indels: 22
0.71 0.07 0.22
Matches are distributed among these distances:
10 5 0.07
11 13 0.18
12 20 0.28
13 26 0.37
14 7 0.10
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (12 bp):
ATAATATATATA
Found at i:33822236 original size:8 final size:10
Alignment explanation
Indices: 33822176--33822240 Score: 55
Period size: 10 Copynumber: 6.3 Consensus size: 10
33822166 AAATATACAT
33822176 ATAATAGTATA
1 ATAATA-TATA
33822187 A-AATATATA
1 ATAATATATA
33822196 ACTAATAATATTA
1 A-TAAT-ATA-TA
*
33822209 AAATATATATA
1 ATA-ATATATA
33822220 ATAATATATA
1 ATAATATATA
33822230 A-AA-ATATA
1 ATAATATATA
33822238 ATA
1 ATA
33822241 TTGAAAACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
8 6 0.13
9 8 0.17
10 12 0.26
11 8 0.17
12 7 0.15
13 5 0.11
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (10 bp):
ATAATATATA
Found at i:33822463 original size:17 final size:16
Alignment explanation
Indices: 33822435--33822468 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
33822425 CTATATATAA
33822435 ATATATATATACATAC
1 ATATATATATACATAC
33822451 ATATATAATATACATAC
1 ATATAT-ATATACATAC
33822468 A
1 A
33822469 CTAGTATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATATATATACATAC
Found at i:33822571 original size:3 final size:3
Alignment explanation
Indices: 33822543--33822630 Score: 58
Period size: 3 Copynumber: 29.7 Consensus size: 3
33822533 ATTAGTATGT
* * * * *
33822543 TAA TAA AAA TAA TAG TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
* *
33822588 -AGA TAA TAA TAGA -AA TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
33822631 TGTAAAAAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
2 6 0.09
3 54 0.84
4 4 0.06
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:33824606 original size:23 final size:22
Alignment explanation
Indices: 33824580--33824626 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
33824570 CAATGAAAAG
*
33824580 AAGTTACTTTTTACATAAAATAA
1 AAGTTAC-TTTTACACAAAATAA
*
33824603 AAGTTTCTTTTACACAAAATAA
1 AAGTTACTTTTACACAAAATAA
33824625 AA
1 AA
33824627 TTATATCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (22 bp):
AAGTTACTTTTACACAAAATAA
Found at i:33827230 original size:3 final size:3
Alignment explanation
Indices: 33827222--33827248 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33827212 AATCATAACC
33827222 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
33827249 ACCAAACAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:33837297 original size:44 final size:44
Alignment explanation
Indices: 33837207--33837879 Score: 275
Period size: 44 Copynumber: 15.2 Consensus size: 44
33837197 GTAGCGGCAA
* * * * * *
33837207 TGGAGTAGATTTAAGCTACCAGCCTTATCTCCCTAAAGTTTCAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * *
33837251 TGGAGCAGGTTTAAGATACAAGTCTTATCTCCCTGAAGTGGTAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * * *** * ** *
33837295 TGGAGCAGACTGAAAATTGTAGATCTTTTCTCCCT-AAGCAGTAG
1 TGGAGCAGATTTAAGATACAAG-TCTTATCTCCCTGAAGTTGCAG
** * ** * * *
33837339 TGGAGCAGATCGAAGACAGCGAA-TCTTATCTCTATGTAG-CGACAA
1 TGGAGCAGATTTAAGATA-C-AAGTCTTATCTCCCTGAAGTTG-CAG
** * * *
33837384 TGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * * * *
33837428 TGGAGTAGGTTCAAGATACAAGTCTTATCTCCCTGAGGTTACAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * * * * ** *
33837472 TGGAACAGACTAAAAATTACAAATCTTATCTCCCT-AAGCAGTAG
1 TGGAGCAGATTTAAGA-TACAAGTCTTATCTCCCTGAAGTTGCAG
** * * * ** *
33837516 TGGAGCAGATCGAAGACGACGAA-TCTTATCTCCGTGTAGCGGCAA
1 TGGAGCAGATTTAAGA-TAC-AAGTCTTATCTCCCTGAAGTTGCAG
* ** * * *
33837561 TTGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * *
33837605 TGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAGGTTGCAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * * * * * ** *
33837649 TGGAGCAAACTAAAAATTGC-AGATCTTATCT-CCTTAAGCAGTAG
1 TGGAGCAGATTTAAGA-TACAAG-TCTTATCTCCCTGAAGTTGCAG
* ** * ** * * * ** *
33837693 TAGAGCAGATCGAAAACGGCGAA-TCTTATCTTCATGTAGCGGCAA
1 TGGAGCAGATTTAAGA-TAC-AAGTCTTATCTCCCTGAAGTTGCAG
** * * * *
33837738 TGGAGCAGATTTAAGCCACCAGCCTAATCTCTCTGAAGTTGCAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * *
33837782 TGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAGGTTGCAG
1 TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* * * *** *
33837826 TGGAGCAGACTGAAAATTGTAGATCTTATCTCCCT-AAGTAGCAG
1 TGGAGCAGATTTAAGATACAAG-TCTTATCTCCCTGAAGTTGCAG
*
33837870 TGGAACAGAT
1 TGGAGCAGAT
33837880 CGAAGACGGC
Statistics
Matches: 450, Mismatches: 161, Indels: 36
0.70 0.25 0.06
Matches are distributed among these distances:
43 3 0.01
44 339 0.75
45 106 0.24
46 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TGGAGCAGATTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
Found at i:33837446 original size:177 final size:177
Alignment explanation
Indices: 33837134--33837949 Score: 1183
Period size: 177 Copynumber: 4.6 Consensus size: 177
33837124 ACTAGTGAAT
* * *
33837134 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCAAATTTTATCTTCATGT
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCATGT
* * * * * *
33837199 AGCGGCAATGGAGTAGATTTAAGCTACCAGCCTTATCTCCCTAAAGTTTCAGTGGAGCAGGTTTA
66 AGCGGCAATGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAGTGGAGCAGGTTCA
* * * *
33837264 AGATACAAGTCTTATCTCCCTGAAGTGGTAGTGGAGCAGACTGAAAA
131 AGATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAAA
* * *
33837311 TTGTAGATCTTTTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATC-TCTATG
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTC-ATG
* *
33837375 TAGCGACAATGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAGTGGAGTAGGTTC
65 TAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAGTGGAGCAGGTTC
* *
33837440 AAGATACAAGTCTTATCTCCCTGAGGTTACAGTGGAACAGACTAAAAA
130 AAGATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAAA
* * * * *
33837488 TTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTCCGTGT
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCATGT
*
33837553 AGCGGCAATTGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAGTGGAGCAGGTTCA
66 AGCGGCAATGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAGTGGAGCAGGTTCA
*
33837618 AGATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAAACTAAAAA
131 AGATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAAA
* * *
33837665 TTGCAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAAACGGCGAATCTTATCTTCATGT
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCATGT
*
33837730 AGCGGCAATGGAGCAGATTTAAGCCACCAGCCTAATCTCTCTGAAGTTGCAGTGGAGCAGGTTCA
66 AGCGGCAATGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAGTGGAGCAGGTTCA
*
33837795 AGATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAAA
131 AGATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAAA
* * * * * *
33837842 TTGTAGATCTTATCTCCCTAAGTAGCAGTGGAACAGATCGAAGACGGCGAGTTTTATCTTCCCAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT--C-A
* * * *
33837907 TGTA---GC-AGGGAGTAGATTTAAGCCACTAGCCTTATCTCCCTGA
63 TGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGA
33837950 GCAATAGTAG
Statistics
Matches: 574, Mismatches: 60, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
176 34 0.06
177 533 0.93
178 1 0.00
179 1 0.00
180 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (177 bp):
TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCATGT
AGCGGCAATGGAGCAGATTTAAGCCACCAGCCTAATCTCCCTGAAGTTGCAGTGGAGCAGGTTCA
AGATACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAAA
Found at i:33840002 original size:26 final size:24
Alignment explanation
Indices: 33839973--33840021 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
33839963 TTTGTACATA
*
33839973 TTATTTATTTGAAATTCATATATATT
1 TTATCTATTTGAAA-TC-TATATATT
*
33839999 TTATCTATTTTAAATCTATATAT
1 TTATCTATTTGAAATCTATATAT
33840022 GTATATCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 2 0.10
26 12 0.57
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (24 bp):
TTATCTATTTGAAATCTATATATT
Found at i:33846443 original size:46 final size:46
Alignment explanation
Indices: 33846367--33846588 Score: 174
Period size: 46 Copynumber: 4.7 Consensus size: 46
33846357 AGGGTAGGGT
*
33846367 GCCGATGCCATATCCCAGACATGGTCTTACACT-GAC-TATTATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTA-TATCTCG-AG
* * *
33846415 GCCGATGCATGTCCTACACATGTCTTACACTAGCTTATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATATCTCGAG
* * *
33846461 GCCGATGCATGTCCCGGACATGTCTTACACTAGC--ACTCATTTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-T-ATCTCGAG
*
33846507 GTCGATGTCATGTCCCAGACATGGTCTTACA-TAGGCTCTCATAATCT--A-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTA-GCT-T-AT-ATCTCGAG
* *
33846555 GCAGATGCATGTCCCAAACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
33846589 CCACAATAAC
Statistics
Matches: 144, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 69 0.48
47 44 0.31
48 22 0.15
49 1 0.01
51 4 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATATCTCGAG
Found at i:33862973 original size:46 final size:46
Alignment explanation
Indices: 33862882--33863100 Score: 144
Period size: 46 Copynumber: 4.7 Consensus size: 46
33862872 GGGGTAGGGT
* *
33862882 GCCGATGCCATATTCCAAACATGGTCTTACACTGACTATCATCTCGTA-
1 GCCGATG-CATGTTCCAGACAT-GTCTTACACTGACTATCATCTCG-AG
* * *
33862930 GCCGATGCATGTTCCAGACATGTTTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTTCCAGACATGTCTTACACTGACTAT-CATCTCGAG
* * * * *
33862976 GCTGATGCATGTCCCGGATATGTCTTACACT-AGC-ACTCATCTCGAT
1 GCCGATGCATGTTCCAGACATGTCTTACACTGA-CTA-TCATCTCGAG
* * * * *
33863022 GCCGATGCCATG-TCTCAGACATGGTCTTACACAGGCTCTCATAAT-GTG
1 GCCGATG-CATGTTC-CAGACAT-GTCTTACACTGACTATCAT-CTCGAG
* * *
33863070 GCCGAAGCATGTCCCAAACATGTCTTACACT
1 GCCGATGCATGTTCCAGACATGTCTTACACT
33863101 AGCCTTCAAT
Statistics
Matches: 132, Mismatches: 27, Indels: 26
0.71 0.15 0.14
Matches are distributed among these distances:
45 2 0.02
46 68 0.52
47 32 0.24
48 29 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTTCCAGACATGTCTTACACTGACTATCATCTCGAG
Found at i:33864844 original size:37 final size:37
Alignment explanation
Indices: 33864785--33864930 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
33864775 AGCTCAGACG
* * *
33864785 AAATCTCTACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
33864822 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
33864859 TAATCTCTACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
33864896 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
33864931 AGATATTTCC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:33864881 original size:74 final size:74
Alignment explanation
Indices: 33864786--33864930 Score: 254
Period size: 74 Copynumber: 2.0 Consensus size: 74
33864776 GCTCAGACGA
* *
33864786 AATCTCTACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCTACACGAAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
33864851 CCCGGACAT
66 CCCGGACAT
* *
33864860 AATCTCTACACGTAGTCATCGGGTCTTACCCAGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCTACACGAAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
33864925 CCCGGA
66 CCCGGA
33864931 AGATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (74 bp):
AATCTCTACACGAAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACAT
Found at i:33865131 original size:48 final size:48
Alignment explanation
Indices: 33865077--33865211 Score: 234
Period size: 48 Copynumber: 2.8 Consensus size: 48
33865067 GCACATTCCC
*
33865077 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
33865125 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
33865173 TACAAATTTCACATTAGCCATTCAGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
33865212 TGCATGTTCA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:33865260 original size:47 final size:47
Alignment explanation
Indices: 33865181--33865374 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
33865171 CGTACAAATT
* * * *
33865181 TCACATTAGCCATTCAGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
33865228 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
33865275 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
33865322 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
33865369 TCACAT
1 TCACAT
33865375 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:33865301 original size:22 final size:22
Alignment explanation
Indices: 33865274--33865345 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
33865264 GCTCACATTC
33865274 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
33865296 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
33865320 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
33865343 ATC
1 ATC
33865346 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:33889293 original size:19 final size:20
Alignment explanation
Indices: 33889269--33889307 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
33889259 AGTTTTTAGT
33889269 TTTATT-CAATTTAGTCCAA
1 TTTATTACAATTTAGTCCAA
*
33889288 TTTATTACGATTTAGTCCAA
1 TTTATTACAATTTAGTCCAA
33889308 AGATTTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (20 bp):
TTTATTACAATTTAGTCCAA
Found at i:33896742 original size:28 final size:27
Alignment explanation
Indices: 33896679--33896830 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
33896669 ATATTAAGTC
* * *
33896679 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
33896706 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
33896734 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
33896761 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
33896789 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
33896816 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33896831 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:33896763 original size:55 final size:55
Alignment explanation
Indices: 33896679--33896830 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
33896669 ATATTAAGTC
* * *
33896679 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
33896734 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
33896789 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
33896831 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:33911900 original size:13 final size:13
Alignment explanation
Indices: 33911882--33911918 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
33911872 GGAGCAGGCG
* *
33911882 TAAAACTTATCTT
1 TAAAACATAACTT
33911895 TAAAACATAACTT
1 TAAAACATAACTT
33911908 TAAAACATAAC
1 TAAAACATAAC
33911919 ATTTTCACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAACATAACTT
Found at i:33912363 original size:27 final size:27
Alignment explanation
Indices: 33912333--33912386 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
33912323 CACAACTTAC
*
33912333 CTGGTGAACTCCAGCTCGTTAAATAGA
1 CTGGTGAACTCCAGCTCGCTAAATAGA
* *
33912360 CTGGTGAACTCTAGCTTGCTAAATAGA
1 CTGGTGAACTCCAGCTCGCTAAATAGA
33912387 TTGGCAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (27 bp):
CTGGTGAACTCCAGCTCGCTAAATAGA
Found at i:33917900 original size:7 final size:7
Alignment explanation
Indices: 33917890--33917916 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
33917880 GAGCTCAGAG
33917890 CTGGCAA
1 CTGGCAA
33917897 CTGGCAA
1 CTGGCAA
33917904 CTGGCAA
1 CTGGCAA
33917911 CTGGCA
1 CTGGCA
33917917 TTAAGCCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.15
Consensus pattern (7 bp):
CTGGCAA
Found at i:33919364 original size:23 final size:25
Alignment explanation
Indices: 33919316--33919365 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
33919306 ATTTTTTGTC
*
33919316 ATAATTTTTTATAAATAAATATATT
1 ATAATTTTTTATAAATAAATAAATT
*
33919341 ATAA-TTTTTATAAA-ATATAAATT
1 ATAATTTTTTATAAATAAATAAATT
33919364 AT
1 AT
33919366 TTTTCATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 9 0.39
24 10 0.43
25 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
ATAATTTTTTATAAATAAATAAATT
Found at i:33919369 original size:21 final size:22
Alignment explanation
Indices: 33919319--33919381 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 22
33919309 TTTTGTCATA
*
33919319 ATTTTTTATAAATAAATATATT
1 ATTTTTTATAAATAAATAAATT
*
33919341 ATAATTTTTATAAA-ATATAAATT
1 AT--TTTTTATAAATAAATAAATT
*
33919364 ATTTTTCAT-AATAAATAA
1 ATTTTTTATAAATAAATAA
33919382 CTTTAGAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 2 0.06
21 11 0.32
22 2 0.06
23 9 0.26
24 10 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTTTTTATAAATAAATAAATT
Found at i:33919992 original size:33 final size:33
Alignment explanation
Indices: 33919955--33920022 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
33919945 AGAAAAATAA
33919955 ATATAATATGTAATTTTATTTAATTAATTTAAC
1 ATATAATATGTAATTTTATTTAATTAATTTAAC
33919988 ATATAATATGTAATTTTATTTAATTAATTTAAC
1 ATATAATATGTAATTTTATTTAATTAATTTAAC
33920021 AT
1 AT
33920023 TCTTTTGTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (33 bp):
ATATAATATGTAATTTTATTTAATTAATTTAAC
Found at i:33922497 original size:23 final size:23
Alignment explanation
Indices: 33922468--33922529 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
33922458 GATCTCACCT
*
33922468 CAAAGGCATTATAGAATGTGCCA
1 CAAAGGCATTATAGAATATGCCA
* * *
33922491 CATAGGCATCACAGAATATGCCA
1 CAAAGGCATTATAGAATATGCCA
*
33922514 CAAAGGCTTTATAGAA
1 CAAAGGCATTATAGAA
33922530 CACATCACAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (23 bp):
CAAAGGCATTATAGAATATGCCA
Found at i:33922577 original size:23 final size:23
Alignment explanation
Indices: 33922543--33922595 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
33922533 ATCACAAAAT
**
33922543 CTTTACATAATATTCCACACAA-G
1 CTTTACATAATACGCCACA-AAGG
33922566 CTTTAC-TAAATACGCCACAAAGG
1 CTTTACAT-AATACGCCACAAAGG
33922589 CTTTACA
1 CTTTACA
33922596 GAAGATTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (23 bp):
CTTTACATAATACGCCACAAAGG
Found at i:33923942 original size:10 final size:10
Alignment explanation
Indices: 33923915--33923958 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
33923905 TTAAATTCTA
*
33923915 AAAGATAAAT
1 AAAGATAATT
33923925 ACAA-ATAATT
1 A-AAGATAATT
33923935 AAAGATAATT
1 AAAGATAATT
33923945 AAAGATAAATT
1 AAAGAT-AATT
33923956 AAA
1 AAA
33923959 TTAAATCCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 2 0.07
10 19 0.63
11 9 0.30
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.25
Consensus pattern (10 bp):
AAAGATAATT
Found at i:33923995 original size:14 final size:13
Alignment explanation
Indices: 33923978--33924015 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
33923968 AAAATTAAAT
33923978 CTAAATAATTATCC
1 CTAAATAATTAT-C
33923992 CT-AATAATTATC
1 CTAAATAATTATC
33924004 CTAATATAATTA
1 CTAA-ATAATTA
33924016 AACATTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.14
13 10 0.45
14 9 0.41
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:33925688 original size:148 final size:149
Alignment explanation
Indices: 33925500--33925794 Score: 511
Period size: 148 Copynumber: 2.0 Consensus size: 149
33925490 GCAATTTTCA
* *
33925500 CGAGAAACTCTTTATCCTTCAAGGATTTTCATATAAATTTCACTTTTAAGTGTACCATACAAATA
1 CGAGAAACTCTATATCCTTCAAGGATTTTCATATAAATTTCACTTTCAAGTGTACCATACAAATA
* **
33925565 GGCTGTAACAACATCTATTAGACGTATATCAAGTTTTTCACATACTGCTAGACTAATAAGGTATC
66 GGCTGTAACAACATCCATTAGACACATATCAAGTTTTTCACATACTGCTAGACTAATAAGGTATC
33925630 TAAACGTGATTGCATCCCC
131 TAAACGTGATTGCATCCCC
33925649 CGAGAAACTCTATATCCTTC-AGGATTTTCATATAAATTTCACTTTCAAGTGTACCATACAAATA
1 CGAGAAACTCTATATCCTTCAAGGATTTTCATATAAATTTCACTTTCAAGTGTACCATACAAATA
* * *
33925713 GGTTGTAACATCATCCATTAGACACATATCAAGTTTTTTACATACTGCTAGACTAATAAGGTATC
66 GGCTGTAACAACATCCATTAGACACATATCAAGTTTTTCACATACTGCTAGACTAATAAGGTATC
33925778 TAAACGTGATTGCATCC
131 TAAACGTGATTGCATCC
33925795 ACTACAGGAG
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
148 119 0.86
149 19 0.14
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.34
Consensus pattern (149 bp):
CGAGAAACTCTATATCCTTCAAGGATTTTCATATAAATTTCACTTTCAAGTGTACCATACAAATA
GGCTGTAACAACATCCATTAGACACATATCAAGTTTTTCACATACTGCTAGACTAATAAGGTATC
TAAACGTGATTGCATCCCC
Found at i:33928074 original size:30 final size:30
Alignment explanation
Indices: 33928040--33928115 Score: 152
Period size: 30 Copynumber: 2.5 Consensus size: 30
33928030 ACATAGGGGT
33928040 AAAATGGTCATTTTGCAAAAGTCTACAGGC
1 AAAATGGTCATTTTGCAAAAGTCTACAGGC
33928070 AAAATGGTCATTTTGCAAAAGTCTACAGGC
1 AAAATGGTCATTTTGCAAAAGTCTACAGGC
33928100 AAAATGGTCATTTTGC
1 AAAATGGTCATTTTGC
33928116 CCAATTTTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (30 bp):
AAAATGGTCATTTTGCAAAAGTCTACAGGC
Found at i:33928521 original size:47 final size:47
Alignment explanation
Indices: 33928453--33928768 Score: 237
Period size: 47 Copynumber: 6.7 Consensus size: 47
33928443 ATTGTGTGCT
33928453 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA-TATGAGAGCC
* * * *
33928499 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGAGATGAGAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA--CATATGAGAGCC
* * *
33928546 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTTGAGATAT-A-AACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC---ACATATGAGAGCC
* * * **
33928592 AGTGTAAGA-TATGTCTGGGACATGGCATC-GACACATATAGAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATAT-GA-GAGCC
* *
33928639 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGGATATGTAAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC--ATATG--AGAGCC
* *
33928689 AGTGTAAGACCATGTCTGGGACATGGCAT---CAACTTGATGAATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT-ATG-A-GAGCC
* *
33928736 AATGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
33928769 ATTATACCCT
Statistics
Matches: 217, Mismatches: 27, Indels: 48
0.74 0.09 0.16
Matches are distributed among these distances:
43 5 0.02
45 7 0.03
46 51 0.24
47 76 0.35
48 37 0.17
49 4 0.02
50 36 0.17
51 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATATGAGAGCC
Found at i:33928642 original size:93 final size:92
Alignment explanation
Indices: 33928452--33928768 Score: 299
Period size: 93 Copynumber: 3.3 Consensus size: 92
33928442 TATTGTGTGC
* *
33928452 TAGTGTAAGACATGTCTGGGACATGCATCGGCC-ACATTATGAGAGCCAGTGTAAGACCATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCGACA-TAT-AAAACCAGTGTAAGACCATGTCT
*
33928516 GGGACATGGCATCAGCATTGAGATGAGAG
64 GGGACATGGCATCAACATTGAGATGAGAG
* * *
33928545 TAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGATAT-AAACCAGTGTAAGA-TATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCC--GACATATAAAACCAGTGTAAGACCATGTCT
*
33928608 GGGACATGGCATCGACACATAT-AGA-G-GTG
64 GGGACATGGCATC-A-ACAT-TGAGATGAGAG
* * *
33928637 TTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTAAAAGCTAGTGTAAGACCAT
1 -TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-GACATATAAAA-CCAGTGTAAGACCAT
*
33928702 GTCTGGGACATGGCATCAAC-TTGATGAATGAG-C
60 GTCTGGGACATGGCATCAACATTGA-G-ATGAGAG
* * *
33928735 CAATGTAAGACCATGTCTAGGACATGGCATCGGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
33928769 ATTATACCCT
Statistics
Matches: 189, Mismatches: 17, Indels: 32
0.79 0.07 0.13
Matches are distributed among these distances:
92 21 0.11
93 56 0.30
94 21 0.11
95 18 0.10
96 9 0.05
97 43 0.23
98 20 0.11
99 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (92 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCGACATATAAAACCAGTGTAAGACCATGTCTGG
GACATGGCATCAACATTGAGATGAGAG
Found at i:33929091 original size:47 final size:47
Alignment explanation
Indices: 33929012--33929205 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
33929002 CATACATATT
* * *
33929012 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
33929059 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
33929106 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
33929153 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
33929200 TCACAT
1 TCACAT
33929206 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:33929122 original size:94 final size:94
Alignment explanation
Indices: 33928965--33929205 Score: 299
Period size: 94 Copynumber: 2.6 Consensus size: 94
33928955 TGTTGTGCTT
* * * *
33928965 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
*
33929027 GGCTTTACCACATATATGCATGTTCACATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
33929060 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
33929125 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
33929154 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
33929206 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:33929132 original size:22 final size:22
Alignment explanation
Indices: 33929105--33929176 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
33929095 GCTCACATTC
33929105 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
33929127 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
33929151 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
33929174 ATC
1 ATC
33929177 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:33932993 original size:4 final size:4
Alignment explanation
Indices: 33932984--33933010 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
33932974 CCATAAAGTA
33932984 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
33933011 AACCTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:33961820 original size:14 final size:14
Alignment explanation
Indices: 33961801--33961836 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
33961791 CCTCTTTTCG
33961801 GCCTTCTAACATCA
1 GCCTTCTAACATCA
33961815 GCCTTCTAACATCA
1 GCCTTCTAACATCA
33961829 GCCTTCTA
1 GCCTTCTA
33961837 CCACTACTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.25, C:0.36, G:0.08, T:0.31
Consensus pattern (14 bp):
GCCTTCTAACATCA
Found at i:33970745 original size:16 final size:16
Alignment explanation
Indices: 33970719--33970756 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
33970709 TTTAAAATAT
33970719 AAATT-AAATACTAAA
1 AAATTAAAATACTAAA
33970734 AAATTAAAATACTAAA
1 AAATTAAAATACTAAA
33970750 AAATTAA
1 AAATTAA
33970757 TATCATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATTAAAATACTAAA
Found at i:33971060 original size:21 final size:20
Alignment explanation
Indices: 33971023--33971071 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
33971013 TTAGATAAAT
33971023 TATAAAATATTTAT-AAAAA
1 TATAAAATATTTATAAAAAA
*
33971042 TATAAAATATATATCTAAAAAA
1 TATAAAATAT-T-TATAAAAAA
*
33971064 TTTAAAAT
1 TATAAAAT
33971072 TTTGTTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.40
20 1 0.04
21 2 0.08
22 12 0.48
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
TATAAAATATTTATAAAAAA
Found at i:33973285 original size:13 final size:13
Alignment explanation
Indices: 33973267--33973294 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
33973257 ATACTTTGCA
33973267 GGTCTATCTGATT
1 GGTCTATCTGATT
33973280 GGTCTATCTGATT
1 GGTCTATCTGATT
33973293 GG
1 GG
33973295 ATCCTTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.29, T:0.43
Consensus pattern (13 bp):
GGTCTATCTGATT
Found at i:33973744 original size:14 final size:15
Alignment explanation
Indices: 33973725--33973755 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
33973715 AGAGAACTCC
33973725 GAAAG-CCCCTGAAT
1 GAAAGCCCCCTGAAT
33973739 GAAAGCCCCCTGAAT
1 GAAAGCCCCCTGAAT
33973754 GA
1 GA
33973756 GTCGGATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.35, C:0.29, G:0.23, T:0.13
Consensus pattern (15 bp):
GAAAGCCCCCTGAAT
Found at i:33975544 original size:27 final size:27
Alignment explanation
Indices: 33975514--33975567 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
33975504 TATATACATG
33975514 TAAAATTATAATTATAAATTGTTTGAA
1 TAAAATTATAATTATAAATTGTTTGAA
*
33975541 TAAAATTCTAATTATAAATTGTTTGAA
1 TAAAATTATAATTATAAATTGTTTGAA
33975568 CTCCAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (27 bp):
TAAAATTATAATTATAAATTGTTTGAA
Found at i:33975579 original size:27 final size:24
Alignment explanation
Indices: 33975521--33975581 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 24
33975511 ATGTAAAATT
33975521 ATAATTATAAATTGTTTGAATAAA
1 ATAATTATAAATTGTTTGAATAAA
33975545 ATTCTAATTATAAATTGTTTGAACTCCAAA
1 A---TAATTATAAATTGTTTGAA-T--AAA
33975575 ATAATTA
1 ATAATTA
33975582 ACAATGATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
24 1 0.03
27 25 0.81
28 1 0.03
30 4 0.13
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.41
Consensus pattern (24 bp):
ATAATTATAAATTGTTTGAATAAA
Found at i:33975626 original size:19 final size:19
Alignment explanation
Indices: 33975594--33975635 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
33975584 AATGATGATC
33975594 TTTTAATTTAAATTATTTA
1 TTTTAATTTAAATTATTTA
33975613 TTTTGAATTT-AATTATTTA
1 TTTT-AATTTAAATTATTTA
33975632 TTTT
1 TTTT
33975636 CTTCATCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTAATTTAAATTATTTA
Found at i:33976395 original size:15 final size:15
Alignment explanation
Indices: 33976375--33976403 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33976365 TGAGACTTAG
33976375 GTTATAAGTCTTGAA
1 GTTATAAGTCTTGAA
33976390 GTTATAAGTCTTGA
1 GTTATAAGTCTTGA
33976404 GGCTTAGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (15 bp):
GTTATAAGTCTTGAA
Found at i:33978228 original size:40 final size:40
Alignment explanation
Indices: 33978184--33978376 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
33978174 CTGGGGTACT
33978184 AAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATC
1 AAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATC
* * * * * *
33978224 AAAGTACAATCAA-GGGCATGAATGTCCATTTAGGGGTATC
1 AAAGTACAA-AAAGGGGCACGTATGTGCATTCAAGGGTATC
* * * **
33978264 GAAGTACAAAAAGGGGCACGTATGTGCATTTAGGGGTGCC
1 AAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATC
*
33978304 AAAGTACAAAAAGGGGCACGTATATGCATTCAAGGGTATC
1 AAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATC
* * *
33978344 GAAGTACAAACAGGGGCATGTATGTGCATTCAA
1 AAAGTACAAAAAGGGGCACGTATGTGCATTCAA
33978377 ACAATAATTA
Statistics
Matches: 128, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 124 0.97
41 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21
Consensus pattern (40 bp):
AAAGTACAAAAAGGGGCACGTATGTGCATTCAAGGGTATC
Found at i:33981194 original size:19 final size:19
Alignment explanation
Indices: 33981170--33981207 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33981160 TTCTTTCCTC
*
33981170 CCTTTTCTTT-CTCCTCTTT
1 CCTTTT-TTTACTCCCCTTT
33981189 CCTTTTTTTACTCCCCTTT
1 CCTTTTTTTACTCCCCTTT
33981208 TCACTCCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.03, C:0.37, G:0.00, T:0.61
Consensus pattern (19 bp):
CCTTTTTTTACTCCCCTTT
Found at i:33981346 original size:17 final size:17
Alignment explanation
Indices: 33981326--33981358 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33981316 ATTTTTGTTT
33981326 TCTCT-TTCATTTTTCTC
1 TCTCTCTTC-TTTTTCTC
33981343 TCTCTCTTCTTTTTCT
1 TCTCTCTTCTTTTTCT
33981359 TTCATCCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (17 bp):
TCTCTCTTCTTTTTCTC
Found at i:33994103 original size:18 final size:18
Alignment explanation
Indices: 33994080--33994125 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
33994070 TAAAATTACG
33994080 AGCTCACATGTCCGTGTA
1 AGCTCACATGTCCGTGTA
33994098 AGCTCACATGTCCGTGTA
1 AGCTCACATGTCCGTGTA
* *
33994116 GGCCCACATG
1 AGCTCACATG
33994126 CCCAAATTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (18 bp):
AGCTCACATGTCCGTGTA
Found at i:33997649 original size:26 final size:29
Alignment explanation
Indices: 33997590--33997647 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
33997580 AACACCACTT
*
33997590 CATCCACCCTGCACACCACATATAGTAAGCC
1 CATCCACCCTACACACCACA-ATAGTAA-CC
33997621 CATCCACCCTACACACCAC-ATAG-AACC
1 CATCCACCCTACACACCACAATAGTAACC
33997648 ATGATATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 2 0.08
28 2 0.08
29 4 0.15
31 18 0.69
ACGTcount: A:0.34, C:0.45, G:0.07, T:0.14
Consensus pattern (29 bp):
CATCCACCCTACACACCACAATAGTAACC
Found at i:34002284 original size:47 final size:47
Alignment explanation
Indices: 34002215--34002341 Score: 154
Period size: 47 Copynumber: 2.7 Consensus size: 47
34002205 GTATAATGCC
*
34002215 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAA-GT-T
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCAAT-AATGTGT
* *
34002262 GATGCCATGTCCCAGACATGGTCTTAAACTGGCTCTCAATAATGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATAATGT-G-T
*
34002311 GATG-CATGTCCCAGACAT-ATCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
34002342 ACACAAATAA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
45 2 0.03
46 6 0.09
47 43 0.61
48 14 0.20
49 5 0.07
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATAATGTGT
Found at i:34009992 original size:48 final size:50
Alignment explanation
Indices: 34009874--34010000 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
34009864 TGAAATCAAG
* * * *
34009874 GCCGATGCCATGTCGCAGACATGGTCTTTCATTAGCTCTCATATATCTGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACATGAGCCCTCATATATCTGT
* * *
34009924 GTCGATGCCATGTCCTAGACATGGTCTTAGACTGA-CACCTC-TATA-C-GT
1 GCCGATGCCATGTCCCAGACATGGTCTTACA-TGAGC-CCTCATATATCTGT
34009972 GCCGATGCCATGTCCCAGACATGGTCTTA
1 GCCGATGCCATGTCCCAGACATGGTCTTA
34010001 TGCCATGTCC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
48 29 0.44
49 1 0.02
50 31 0.47
51 5 0.08
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACATGAGCCCTCATATATCTGT
Found at i:34010008 original size:24 final size:24
Alignment explanation
Indices: 34009976--34010048 Score: 128
Period size: 24 Copynumber: 3.0 Consensus size: 24
34009966 ATACGTGCCG
*
34009976 ATGCCATGTCCCAGACATGGTCTT
1 ATGCCATGTCCTAGACATGGTCTT
34010000 ATGCCATGTCCTAGACATGGTCTT
1 ATGCCATGTCCTAGACATGGTCTT
*
34010024 ATGCCATATCCTAGACATGGTCTT
1 ATGCCATGTCCTAGACATGGTCTT
34010048 A
1 A
34010049 CACTGACACA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (24 bp):
ATGCCATGTCCTAGACATGGTCTT
Found at i:34010118 original size:46 final size:43
Alignment explanation
Indices: 34010028--34010148 Score: 127
Period size: 46 Copynumber: 2.7 Consensus size: 43
34010018 GGTCTTATGC
* *
34010028 CATATCCTAGACATGGTCTTACACTGACACATCTTGTAGTCGATG
1 CATATCC-AGACAT-GTCTTACACTAACACATCTTGTAGCCGATG
34010073 CATATCTCAGACATGTCTTACACTAACTTACATCTTG-AGGCCGATG
1 CATATC-CAGACATGTCTTACACTAAC--ACATCTTGTA-GCCGATG
* * *
34010119 CATGTCCCAAACATGTCTTACACTAGCACA
1 CATAT-CCAGACATGTCTTACACTAACACA
34010149 CAAATAACCC
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
44 15 0.23
45 13 0.20
46 37 0.56
47 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (43 bp):
CATATCCAGACATGTCTTACACTAACACATCTTGTAGCCGATG
Found at i:34011890 original size:21 final size:21
Alignment explanation
Indices: 34011866--34011913 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
34011856 GAGTCTAAGT
* *
34011866 CGTGTGAAGGAGGGACACGCC
1 CGTGTGAAAGAGGCACACGCC
* *
34011887 CGTGTGAAAGAGGCACATGGC
1 CGTGTGAAAGAGGCACACGCC
34011908 CGTGTG
1 CGTGTG
34011914 GTGGAGACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.42, T:0.15
Consensus pattern (21 bp):
CGTGTGAAAGAGGCACACGCC
Found at i:34018106 original size:27 final size:27
Alignment explanation
Indices: 34018053--34018106 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
34018043 ACATTACGTG
*
34018053 AAAAACTAAATAAAAGTTGAATTAAAA
1 AAAAACTAAATAAAAGTTGAATAAAAA
*
34018080 AAAAACTAAATATATAGTT-AATAAAAA
1 AAAAACTAAATA-AAAGTTGAATAAAAA
34018107 GAATAAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.24
Consensus pattern (27 bp):
AAAAACTAAATAAAAGTTGAATAAAAA
Found at i:34020274 original size:26 final size:24
Alignment explanation
Indices: 34020240--34020311 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 24
34020230 TTGTGCAAGT
*
34020240 ATATTAAAATCAAATAATAATAAA
1 ATATAAAAATCAAATAATAATAAA
* *
34020264 AGTATCAAAAATCAATTAATAGTAAA
1 A-TAT-AAAAATCAAATAATAATAAA
*
34020290 ATCTAAACATATCAAATAATAA
1 ATATAAA-A-ATCAAATAATAA
34020312 AGAAATTCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 4 0.11
25 6 0.16
26 28 0.74
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.28
Consensus pattern (24 bp):
ATATAAAAATCAAATAATAATAAA
Found at i:34025900 original size:25 final size:25
Alignment explanation
Indices: 34025870--34025931 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
34025860 CAGCTAGTAT
* * *
34025870 GAGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTACCATTAATCAGCTCGGAG
*
34025895 GTGCTTACCATTAATCAGCTCGGAG
1 GAGCTTACCATTAATCAGCTCGGAG
34025920 GAGCTTACCATT
1 GAGCTTACCATT
34025932 TACAACTCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (25 bp):
GAGCTTACCATTAATCAGCTCGGAG
Found at i:34027639 original size:43 final size:43
Alignment explanation
Indices: 34027579--34027661 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
34027569 GAGATATGTG
* * *
34027579 GCATCCGAGCTCGTTGAGATATCCGAGTTCATTATGGATGAGA
1 GCATCCGAGCTCATTGAGAGATCCGAGTTCATAATGGATGAGA
* *
34027622 GCATCTGAGCTCATTGAGAGGTCCGAGTTCATAATGGATG
1 GCATCCGAGCTCATTGAGAGATCCGAGTTCATAATGGATG
34027662 CGATTCATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGAGATCCGAGTTCATAATGGATGAGA
Found at i:34029042 original size:13 final size:13
Alignment explanation
Indices: 34029024--34029048 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34029014 CAGGCCGTTG
34029024 AGGGACACGGGCC
1 AGGGACACGGGCC
34029037 AGGGACACGGGC
1 AGGGACACGGGC
34029049 GTGTGCTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:34030956 original size:43 final size:44
Alignment explanation
Indices: 34030891--34031023 Score: 133
Period size: 51 Copynumber: 2.9 Consensus size: 44
34030881 GAGATATGTG
* * *
34030891 GCATCCGAGCTTGTAGAAAGGTCCGAGTTCATTATGGATACA-A
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATACATA
* * *
34030934 GCATCCAAGCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGATTCATGTA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCAT--T--ATG-GATACA--TA
*
34030985 ACATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGAT
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGAT
34031024 GTGTTACATA
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
43 27 0.37
45 1 0.01
46 3 0.04
47 6 0.08
48 5 0.07
49 1 0.01
51 30 0.41
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATACATA
Found at i:34032512 original size:23 final size:23
Alignment explanation
Indices: 34032454--34032512 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
34032444 GTCCCAATGA
34032454 ACACGGGCGTGTGCATTGCCTCC
1 ACACGGGCGTGTGCATTGCCTCC
* *
34032477 ACATGGGTGTGTGCATTGCCTCC
1 ACACGGGCGTGTGCATTGCCTCC
*
34032500 ACACGGGCATGTG
1 ACACGGGCGTGTG
34032513 AGGTTGAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.15, C:0.29, G:0.32, T:0.24
Consensus pattern (23 bp):
ACACGGGCGTGTGCATTGCCTCC
Found at i:34033006 original size:27 final size:27
Alignment explanation
Indices: 34032976--34033030 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
34032966 TTTTACAACA
34032976 TTTAGAAAATTTTTACCAAAATAGGGG
1 TTTAGAAAATTTTTACCAAAATAGGGG
*
34033003 TTTAGAAAATTTTTGCCAAAATAGGGG
1 TTTAGAAAATTTTTACCAAAATAGGGG
34033030 T
1 T
34033031 CACACGCCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (27 bp):
TTTAGAAAATTTTTACCAAAATAGGGG
Found at i:34035460 original size:49 final size:50
Alignment explanation
Indices: 34035382--34035626 Score: 289
Period size: 49 Copynumber: 4.9 Consensus size: 50
34035372 TAGCCAAAAC
* *
34035382 TATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGA-CAAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
* * * * * *
34035431 TATCCGGTACACGTAGTGGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
* * * * *
34035481 TATCTGATACACGTAGTAGCCTGCACTTA-TAACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGT-ACTACACACGCGA-CCAAAT
* * **
34035532 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACC-AAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
*
34035581 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
34035627 TCACAACAGA
Statistics
Matches: 163, Mismatches: 29, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
49 82 0.50
50 43 0.26
51 37 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
Found at i:34035572 original size:26 final size:26
Alignment explanation
Indices: 34035543--34035619 Score: 65
Period size: 26 Copynumber: 3.1 Consensus size: 26
34035533 ATCGGGTACG
34035543 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
* * **
34035569 CATACG-A--C--CAATTATCTGGTACA
1 CATA-GTAGCCTGCACTTA-GTACTACA
34035592 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
34035618 CA
1 CA
34035620 CGTGACCTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 1 0.03
25 1 0.03
26 12 0.33
27 6 0.17
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (26 bp):
CATAGTAGCCTGCACTTAGTACTACA
Found at i:34049699 original size:29 final size:29
Alignment explanation
Indices: 34049619--34049797 Score: 175
Period size: 29 Copynumber: 6.1 Consensus size: 29
34049609 GTGTGCTAAA
* * *
34049619 CGATAGTCGAAACCATCCCTTTTCTTTAATT
1 CGATGGTCGAAACCATCCTTTTTC-AT-ATT
* *
34049650 -GATGGTCAAAACTATCC-TTTTCATATT
1 CGATGGTCGAAACCATCCTTTTTCATATT
** *
34049677 CGATGGTCGTCACCATCCTTTTTCACAGTT
1 CGATGGTCGAAACCATCCTTTTTCATA-TT
* *
34049707 -GATGGTCGAAACCATCCTTTTTCTTTAAT
1 CGATGGTCGAAACCATCCTTTTTC-ATATT
* *
34049736 CGATGGTCGAAGCCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCTTTTTCATATT
* *
34049765 CGATAGTCGAAACCATCCTCTTTCATATT
1 CGATGGTCGAAACCATCCTTTTTCATATT
34049794 CGAT
1 CGAT
34049798 AGGTGTCGAT
Statistics
Matches: 121, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.02
28 14 0.12
29 66 0.55
30 38 0.31
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.37
Consensus pattern (29 bp):
CGATGGTCGAAACCATCCTTTTTCATATT
Found at i:34049759 original size:59 final size:56
Alignment explanation
Indices: 34049619--34049797 Score: 171
Period size: 59 Copynumber: 3.1 Consensus size: 56
34049609 GTGTGCTAAA
* * * * *
34049619 CGATAGTCGAAACCATCCCTTTTCTTTAATTGATGGTCAAAACTATCC-TTTTCATATT
1 CGATGGTCG-AACCATCCCTTTTC-AT-ATTGATGGTCGAAACCATCCTTTTTCATAAT
* * * *
34049677 CGATGGTCGTCACCATCCTTTTTCACAGTTGATGGTCGAAACCATCCTTTTTCTTTAAT
1 CGATGGTCG-AACCATCCCTTTTCATA-TTGATGGTCGAAACCATCCTTTTTC-ATAAT
* * *
34049736 CGATGGTCGAAGCCATCCCTTTTCATATTCGATAGTCGAAACCATCCTCTTTCATATT
1 CGATGGTCGAA-CCATCCCTTTTCATATT-GATGGTCGAAACCATCCTTTTTCATAAT
34049794 CGAT
1 CGAT
34049798 AGGTGTCGAT
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
56 1 0.01
57 17 0.17
58 35 0.35
59 46 0.46
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.37
Consensus pattern (56 bp):
CGATGGTCGAACCATCCCTTTTCATATTGATGGTCGAAACCATCCTTTTTCATAAT
Found at i:34052456 original size:26 final size:27
Alignment explanation
Indices: 34052427--34052480 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
34052417 TCACACAAGT
*
34052427 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
34052453 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
34052480 T
1 T
34052481 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:34052511 original size:27 final size:27
Alignment explanation
Indices: 34052481--34052569 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
34052471 GGGGCAAAAT
* * * *
34052481 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34052508 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34052535 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34052562 AGTAATTC
1 GGTAATTC
34052570 AACAACTTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:34058137 original size:27 final size:26
Alignment explanation
Indices: 34058090--34058140 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
34058080 CGAGGCTGCT
*
34058090 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
34058116 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
34058141 TTGCAACGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:34058936 original size:27 final size:27
Alignment explanation
Indices: 34058794--34058938 Score: 173
Period size: 27 Copynumber: 5.4 Consensus size: 27
34058784 GGGGCAAAAT
* * * *
34058794 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34058821 GGCAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34058848 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34058875 GGTGATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34058902 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34058929 GGTAATTCTA
1 GGTAATTCTA
34058939 TAACTTATCC
Statistics
Matches: 98, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:34058939 original size:54 final size:54
Alignment explanation
Indices: 34058795--34058939 Score: 200
Period size: 54 Copynumber: 2.7 Consensus size: 54
34058785 GGGCAAAATG
* * * * * * *
34058795 GTAATTTTACCCCACAAGGGTATCTCGGCAATTTTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCA
* *
34058849 GTATTTCTACCCTACAAGGGTATTTCGGTGATTCTATCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCA
*
34058903 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAT
34058940 AACTTATCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCA
Found at i:34064309 original size:41 final size:41
Alignment explanation
Indices: 34064224--34064330 Score: 137
Period size: 41 Copynumber: 2.7 Consensus size: 41
34064214 AATAACACAC
* *
34064224 TAGT-TTGTGGTCAAGCCACCTGTAA-TGCAGATAAACTAT
1 TAGTATTGTGGACAAGCCACCAGTAATTGCAGATAAACTAT
* * * *
34064263 CAGTATTGTGGACAAGCCACCAATAATTGTAGATAAACTGT
1 TAGTATTGTGGACAAGCCACCAGTAATTGCAGATAAACTAT
*
34064304 TAGTATTGTAGACAAGCCACCAGTAAT
1 TAGTATTGTGGACAAGCCACCAGTAAT
34064331 ATGTTGTCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.05
40 18 0.32
41 36 0.63
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (41 bp):
TAGTATTGTGGACAAGCCACCAGTAATTGCAGATAAACTAT
Found at i:34064328 original size:20 final size:20
Alignment explanation
Indices: 34064263--34064357 Score: 55
Period size: 20 Copynumber: 4.6 Consensus size: 20
34064253 GATAAACTAT
*
34064263 CAGTATTGTGGACAAGCCAC
1 CAGTATTGTAGACAAGCCAC
* * * ***
34064283 CAATAATTGTAGATAAACTGT
1 CAGT-ATTGTAGACAAGCCAC
*
34064304 TAGTATTGTAGACAAGCCAC
1 CAGTATTGTAGACAAGCCAC
* *
34064324 CAGTAATATGTTGTCAAGCCAC
1 CAGT-AT-TGTAGACAAGCCAC
* *
34064346 AAGTGTTGTAGA
1 CAGTATTGTAGA
34064358 AAAGTTGCCA
Statistics
Matches: 51, Mismatches: 21, Indels: 6
0.65 0.27 0.08
Matches are distributed among these distances:
20 21 0.41
21 15 0.29
22 15 0.29
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (20 bp):
CAGTATTGTAGACAAGCCAC
Found at i:34069380 original size:48 final size:48
Alignment explanation
Indices: 34069325--34069648 Score: 368
Period size: 48 Copynumber: 6.8 Consensus size: 48
34069315 AGGGCGAATT
*
34069325 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT-TGCATGTCGA-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATGTC-ATG
* * * * * *
34069373 GCCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCGTCTCATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGTCATG
* *
34069421 GCCGATGCCATGTCCCAAACATGGTTTTACACTGGCTCTCATGAT-GTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATG-TCATG
* * * * *** *
34069469 GCTGATGCCATGTCCCAGACATAGTCTTACACTGCCTCTCACAACATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGTCATG
* * *
34069517 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGTCATG
* * *
34069565 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAG-CATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCA-TGTCATG
*
34069613 GCCGATGCCATGTCTCAAACATGGTCTTACACTGGC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
34069649 ATGCATATCA
Statistics
Matches: 231, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.00
48 228 0.99
49 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGTCATG
Found at i:34069486 original size:96 final size:96
Alignment explanation
Indices: 34069322--34069648 Score: 448
Period size: 96 Copynumber: 3.4 Consensus size: 96
34069312 AAGAGGGCGA
* *
34069322 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT-TGCATG-TCGAGGCCGATGCCATG
1 ATTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATGATCGTGGCCGATGCCATG
* * *
34069385 TCCCAGACATGGTCTTACAATAGCTCTCGTC-TC
65 TCCCAGACATGGTCTTACACT-GCTCTC-ACAAC
* *
34069418 ATTGCCGATGCCATGTCCCAAACATGGTTTTACACTGGCTCTCATGAT-GTGGCTGATGCCATGT
1 ATTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGT
*
34069482 CCCAGACATAGTCTTACACTGCCTCTCACAAC
66 CCCAGACATGGTCTTACACTG-CTCTCACAAC
* * *
34069514 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCATAGCCGATGCCATGT
1 ATTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGT
*
34069578 CCCAGACATGGTCTTACACTGGCTCTCACAGC
66 CCCAGACATGGTCTTACACT-GCTCTCACAAC
* *
34069610 ATCGCCGATGCCATGTCTCAAACATGGTCTTACACTGGC
1 ATTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
34069649 ATGCATATCA
Statistics
Matches: 207, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
95 4 0.02
96 200 0.97
97 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (96 bp):
ATTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGT
CCCAGACATGGTCTTACACTGCTCTCACAAC
Found at i:34074687 original size:48 final size:48
Alignment explanation
Indices: 34074632--34074858 Score: 219
Period size: 48 Copynumber: 4.7 Consensus size: 48
34074622 GGGTGAATTA
* * *
34074632 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGAGG
* * * **
34074680 CCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATCTC-ATTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGA-GG
* * * *
34074728 CCGATGCCATATCCCAGACATGGTCTTACATTGGATCTCATGAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATG-TCGAGG
* * * * * *
34074776 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCAT-ACATAT-TAGTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATGTCGAG-G
*
34074824 TCGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
34074859 ACACATATCA
Statistics
Matches: 144, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
47 3 0.02
48 139 0.97
49 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGAGG
Found at i:34074794 original size:96 final size:96
Alignment explanation
Indices: 34074628--34074857 Score: 302
Period size: 96 Copynumber: 2.4 Consensus size: 96
34074618 AAGAGGGTGA
* * *
34074628 ATTACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATGTCGAGGCCGATGCCATGTC
1 ATTACCGATGCCATGTCCCAGACATGGTCTTACACTGGATCGCATGTCGAGGCCGATGCCATGTC
* * *
34074693 TCAGACATGGTCTTACACTAGC-TCTCATCTC
66 CCAGACATGGTCTTACACTAGCAT-ACATATC
* * * * *
34074724 ATTACCGATGCCATATCCCAGACATGGTCTTACATTGGATCTCATGAT-GTGGCTGATGCCATGT
1 ATTACCGATGCCATGTCCCAGACATGGTCTTACACTGGATCGCATG-TCGAGGCCGATGCCATGT
*
34074788 CCCAGACATGGTCTTACACTAGCATACATATT
65 CCCAGACATGGTCTTACACTAGCATACATATC
* *
34074820 AGTATCGATGCCATGTCCCAGACATGGTCTTACACTGG
1 ATTACCGATGCCATGTCCCAGACATGGTCTTACACTGG
34074858 CACACATATC
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
96 114 0.98
97 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (96 bp):
ATTACCGATGCCATGTCCCAGACATGGTCTTACACTGGATCGCATGTCGAGGCCGATGCCATGTC
CCAGACATGGTCTTACACTAGCATACATATC
Found at i:34079155 original size:17 final size:17
Alignment explanation
Indices: 34079135--34079167 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34079125 ATTTTTTACG
34079135 AAATTCTATTTCTATTT
1 AAATTCTATTTCTATTT
*
34079152 AAATTCTATTTTTATT
1 AAATTCTATTTCTATT
34079168 AATATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (17 bp):
AAATTCTATTTCTATTT
Found at i:34081418 original size:33 final size:32
Alignment explanation
Indices: 34081312--34081419 Score: 103
Period size: 32 Copynumber: 3.3 Consensus size: 32
34081302 AGAAGTATTA
* * ** *
34081312 TTATCATTTAACAAAATGCTAGTTGATATTTA
1 TTATAATTTCACAAAATGAAAGTTGATATTTG
*
34081344 TTATAAGTTT-ACAAAATTAAAGTTG-TAATTTG
1 TTATAA-TTTCACAAAATGAAAGTTGAT-ATTTG
*
34081376 TTATAATTTCACAAAATGAAAAGATGATATTTG
1 TTATAATTTCACAAAATG-AAAGTTGATATTTG
*
34081409 TTATCATTTCA
1 TTATAATTTCA
34081420 TAGAACCGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
31 4 0.06
32 34 0.54
33 24 0.38
34 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (32 bp):
TTATAATTTCACAAAATGAAAGTTGATATTTG
Found at i:34085914 original size:10 final size:9
Alignment explanation
Indices: 34085893--34085933 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
34085883 TTAATTTTTT
34085893 AAATT-TAA
1 AAATTATAA
34085901 AAATTATAA
1 AAATTATAA
*
34085910 AAAAT-TAA
1 AAATTATAA
34085918 AAATTATAA
1 AAATTATAA
34085927 AAATTAT
1 AAATTAT
34085934 TTTAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 12 0.41
9 17 0.59
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AAATTATAA
Found at i:34085917 original size:17 final size:17
Alignment explanation
Indices: 34085897--34085929 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
34085887 TTTTTTAAAT
34085897 TTAAAAATTATAAAAAA
1 TTAAAAATTATAAAAAA
34085914 TTAAAAATTATAAAAA
1 TTAAAAATTATAAAAA
34085930 TTATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TTAAAAATTATAAAAAA
Found at i:34089529 original size:140 final size:140
Alignment explanation
Indices: 34089324--34089648 Score: 429
Period size: 140 Copynumber: 2.3 Consensus size: 140
34089314 AAACATGTCA
* * *
34089324 ACATATGCTTTGGCCAACTATTTG-ATAAGAGTCGAGATATGCATGCCTAAGGCAACACTTAAAT
1 ACATACGCTTTGGCCAACTCTTTGTATAAGAGTCGAGATATACATGCCTAAGGCAACACTTAAAT
34089388 AAGAGTCGACTTTATCCAACACTATGCCAACACTTTTGAGCCGACACTTTCCTAACTATTGGGAT
66 AAGAGTCGACTTTATCCAACACTATGCCAACACTTTTGAGCCGACACTTTCCTAACTATTGGGAT
34089453 AGACCTGCCG
131 AGACCTGCCG
* * *
34089463 ACATACGCTTTGGCCAACTCTTTGTATAA-ATGTTGGGATATACATGCCTAAGGCAACACTTCAA
1 ACATACGCTTTGGCCAACTCTTTGTATAAGA-GTCGAGATATACATGCCTAAGGCAACACTTAAA
* * * ** * * * * * *
34089527 TAATAGTCGATTTTCTCCAACACTATGCTGATACTTTTGGGCCTATACTTTCCTAAGTGTTGGGA
65 TAAGAGTCGACTTTATCCAACACTATGCCAACACTTTTGAGCCGACACTTTCCTAACTATTGGGA
*
34089592 TAGACTTGCCG
130 TAGACCTGCCG
* * * *
34089603 ACATACGCTTTGGCTAACTCTTTGTATAAGGGTTGAGATATGCATG
1 ACATACGCTTTGGCCAACTCTTTGTATAAGAGTCGAGATATACATG
34089649 TGGAATGATG
Statistics
Matches: 161, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
139 23 0.14
140 138 0.86
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (140 bp):
ACATACGCTTTGGCCAACTCTTTGTATAAGAGTCGAGATATACATGCCTAAGGCAACACTTAAAT
AAGAGTCGACTTTATCCAACACTATGCCAACACTTTTGAGCCGACACTTTCCTAACTATTGGGAT
AGACCTGCCG
Found at i:34092723 original size:32 final size:32
Alignment explanation
Indices: 34092642--34092730 Score: 83
Period size: 32 Copynumber: 2.8 Consensus size: 32
34092632 TTTCAGTAGT
* * *
34092642 GGTATTATAATTGGCACAAAGCCATCGGTAAC
1 GGTAATATAATTGGCACAAAGCCATCAGCAAC
* * *
34092674 TGTAATA-AATTTTGCACATAA-CCATCAGCGAC
1 GGTAATATAA-TTGGCACA-AAGCCATCAGCAAC
*
34092706 GGTAATATAATTGGCACACAGCCAT
1 GGTAATATAATTGGCACAAAGCCAT
34092731 GAGTAAATAT
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
31 3 0.07
32 37 0.84
33 4 0.09
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (32 bp):
GGTAATATAATTGGCACAAAGCCATCAGCAAC
Found at i:34092739 original size:27 final size:27
Alignment explanation
Indices: 34092709--34092793 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
34092699 CAGCGACGGT
* * *
34092709 AATATAATTGGCACACAGCCATGAGTA
1 AATATGATAGGCACAAAGCCATGAGTA
* * * * * *
34092736 AATATGATCGACACAGAGTCATCAATA
1 AATATGATAGGCACAAAGCCATGAGTA
34092763 AATATGATAGGCACAAAGCCATTG-GTA
1 AATATGATAGGCACAAAGCCA-TGAGTA
34092790 AATA
1 AATA
34092794 CGATTTTCTC
Statistics
Matches: 44, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (27 bp):
AATATGATAGGCACAAAGCCATGAGTA
Found at i:34093241 original size:27 final size:26
Alignment explanation
Indices: 34093211--34093349 Score: 116
Period size: 27 Copynumber: 5.2 Consensus size: 26
34093201 AAAACAGTTG
*
34093211 TTTTACCATACAGGGGTATTTCGGCAA
1 TTTTA-CATACAGGGGTATTTCGGTAA
*
34093238 TTTTACACTACAAGGGTATTTCGGTAA
1 TTTTACA-TACAGGGGTATTTCGGTAA
* * *
34093265 TTTTACAAACTGGGGGTATTTCAGTAA
1 TTTTACATAC-AGGGGTATTTCGGTAA
* * * **
34093292 TTTTATAAACTGAGGGTATTTTAGTAA
1 TTTTACATACAG-GGGTATTTCGGTAA
* * *
34093319 TTTTACAAACTGGGGGTATTTCGATAA
1 TTTTACATAC-AGGGGTATTTCGGTAA
34093346 TTTT
1 TTTT
34093350 TAAATCAGGG
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.05
27 88 0.94
28 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.40
Consensus pattern (26 bp):
TTTTACATACAGGGGTATTTCGGTAA
Found at i:34093281 original size:54 final size:54
Alignment explanation
Indices: 34093223--34093341 Score: 159
Period size: 54 Copynumber: 2.2 Consensus size: 54
34093213 TTACCATACA
* *
34093223 GGGGTATTTCGGCAATTTTACACTAC-AAGGGTATTTCGGTAATTTTACAAACTG
1 GGGGTATTTCGGCAATTTTACA-AACTAAGGGTATTTCAGTAATTTTACAAACTG
* * * * *
34093277 GGGGTATTTCAGTAATTTTATAAACTGAGGGTATTTTAGTAATTTTACAAACTG
1 GGGGTATTTCGGCAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAAACTG
34093331 GGGGTATTTCG
1 GGGGTATTTCG
34093342 ATAATTTTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 2 0.04
54 54 0.96
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.38
Consensus pattern (54 bp):
GGGGTATTTCGGCAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAAACTG
Found at i:34093347 original size:54 final size:53
Alignment explanation
Indices: 34093250--34093353 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 53
34093240 TTACACTACA
*
34093250 AGGGTATTTCGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTATAAACTG
1 AGGGTATTTCAGTAATTTTACAAACTGGGGGTATTTCAGTAATTTT-TAAACTG
*
34093304 AGGGTATTTTAGTAATTTTACAAACTGGGGGTATTTC-GATAATTTTTAAA
1 AGGGTATTTCAGTAATTTTACAAACTGGGGGTATTTCAG-TAATTTTTAAA
34093354 TCAGGGTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
53 5 0.11
54 42 0.89
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTTAAACTG
Found at i:34097137 original size:27 final size:27
Alignment explanation
Indices: 34097085--34097151 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
34097075 AGGGGCAAAA
* * *
34097085 CAGTTATTTTACCCTACAGGGATATTT
1 CAGTAATTTTACACTACAAGGATATTT
34097112 CAGTAATTTTACACTACAAAGG-TATTT
1 CAGTAATTTTACACTAC-AAGGATATTT
*
34097139 CGGTAATTTTACA
1 CAGTAATTTTACA
34097152 AACTGAGGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.91
28 3 0.09
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGATATTT
Found at i:34097162 original size:27 final size:26
Alignment explanation
Indices: 34097132--34097291 Score: 171
Period size: 27 Copynumber: 6.0 Consensus size: 26
34097122 ACACTACAAA
* *
34097132 GGTATTTCGGTAATTTTACAAACTGAG
1 GGTATTTCGATAATTTTACAAA-TCAG
* *
34097159 GGTATTTTGATAATTTTGCAAATCAG
1 GGTATTTCGATAATTTTACAAATCAG
* *
34097185 AGGTATTTTGGTAATTTTACAAA-CTAG
1 -GGTATTTCGATAATTTTACAAATC-AG
34097212 AGGTATTTCGATAATTTTACAAATCAG
1 -GGTATTTCGATAATTTTACAAATCAG
* *
34097239 GTGTATTT-TAGTAATTTTACAAATCGGG
1 G-GTATTTCGA-TAATTTTACAAATC-AG
34097267 GGTATTTCGATAATTTTACAAATCA
1 GGTATTTCGATAATTTTACAAATCA
34097292 AGGTCTTAAC
Statistics
Matches: 114, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
26 6 0.05
27 104 0.91
28 4 0.04
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (26 bp):
GGTATTTCGATAATTTTACAAATCAG
Found at i:34097165 original size:54 final size:53
Alignment explanation
Indices: 34097102--34097292 Score: 208
Period size: 54 Copynumber: 3.5 Consensus size: 53
34097092 TTTACCCTAC
*
34097102 AGGGATATTTC-AGTAATTTTAC-ACTACAAAGGTATTTCGGTAATTTTACAAACT
1 AGGG-TATTTCGA-TAATTTTACAAAT-CAAAGGTATTTCGGTAATTTTACAAACT
* * * *
34097156 GAGGGTATTTTGATAATTTTGCAAATCAGAGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGATAATTTTACAAATCAAAGGTATTTCGGTAATTTTACAAACT
* ** *
34097210 AGAGGTATTTCGATAATTTTACAAATC-AGGTGTATTTTAGTAATTTTACAAATCG
1 AG-GGTATTTCGATAATTTTACAAATCAAAG-GTATTTCGGTAATTTTACAAA-CT
*
34097265 GGGGTATTTCGATAATTTTACAAATCAA
1 AGGGTATTTCGATAATTTTACAAATCAA
34097293 GGTCTTAACG
Statistics
Matches: 118, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
53 3 0.03
54 105 0.89
55 10 0.08
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAATCAAAGGTATTTCGGTAATTTTACAAACT
Found at i:34097227 original size:81 final size:80
Alignment explanation
Indices: 34097107--34097288 Score: 224
Period size: 81 Copynumber: 2.2 Consensus size: 80
34097097 CCTACAGGGA
* * * *
34097107 TATTTCAGTAATTTTACACTACAAAGGTATTTCGGTAATTTTACAAACTGAGG-GTATTTT-GAT
1 TATTTCGGTAATTTTACA-AACAAAGGTATTTCGATAATTTTACAAA-TCAGGTGTATTTTAG-T
*
34097170 AATTTTGCAAATCAGAGG
63 AATTTTACAAATCAGAGG
* *
34097188 TATTTTGGTAATTTTACAAACTAGAGGTATTTCGATAATTTTACAAATCAGGTGTATTTTAGTAA
1 TATTTCGGTAATTTTACAAAC-AAAGGTATTTCGATAATTTTACAAATCAGGTGTATTTTAGTAA
* *
34097253 TTTTACAAATCGGGGG
65 TTTTACAAATCAGAGG
*
34097269 TATTTCGATAATTTTACAAA
1 TATTTCGGTAATTTTACAAA
34097289 TCAAGGTCTT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
80 6 0.07
81 80 0.92
82 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (80 bp):
TATTTCGGTAATTTTACAAACAAAGGTATTTCGATAATTTTACAAATCAGGTGTATTTTAGTAAT
TTTACAAATCAGAGG
Found at i:34098844 original size:24 final size:24
Alignment explanation
Indices: 34098799--34098844 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
34098789 CCTAAAATCC
*
34098799 CTCCATGATTTCCTCCCCAATCTT
1 CTCCATGATTTCCTCCACAATCTT
* * *
34098823 CTCCTTGATTTTCTCCATAATC
1 CTCCATGATTTCCTCCACAATC
34098845 CATTCTTTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.17, C:0.37, G:0.04, T:0.41
Consensus pattern (24 bp):
CTCCATGATTTCCTCCACAATCTT
Found at i:34116399 original size:46 final size:46
Alignment explanation
Indices: 34116312--34116437 Score: 155
Period size: 46 Copynumber: 2.7 Consensus size: 46
34116302 TCATCTCGTA
* * ** * *
34116312 GCCGACGCATATCCCAGACATGTCTTACACTTGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTACCCTACGTCTCAAG
*
34116358 GCCGATGCATGTCCCAGACATGTCTTACACTACCACT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTACC-CTACGTCTCAAG
34116404 GCCGATGCCATGTCCCAGACATGGTCTTACACTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTA
34116438 GCTCTCACAA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 44 0.63
47 15 0.21
48 11 0.16
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.25
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTACCCTACGTCTCAAG
Found at i:34116669 original size:9 final size:9
Alignment explanation
Indices: 34116655--34116682 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
34116645 ATGTGGCGAC
34116655 TAGTCAATT
1 TAGTCAATT
34116664 TAGTCAATT
1 TAGTCAATT
34116673 TAGTCAATT
1 TAGTCAATT
34116682 T
1 T
34116683 GCTTGGCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TAGTCAATT
Found at i:34121921 original size:13 final size:13
Alignment explanation
Indices: 34121888--34121921 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
34121878 CAGGGACACT
34121888 CCCGTGTGGCACG
1 CCCGTGTGGCACG
*
34121901 CCCATGTGGCACG
1 CCCGTGTGGCACG
*
34121914 CTCGTGTG
1 CCCGTGTG
34121922 AATCGTGCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.09, C:0.35, G:0.35, T:0.21
Consensus pattern (13 bp):
CCCGTGTGGCACG
Found at i:34125849 original size:55 final size:55
Alignment explanation
Indices: 34125758--34125883 Score: 135
Period size: 55 Copynumber: 2.3 Consensus size: 55
34125748 AACGCCCATC
* * * *
34125758 TTAATTTAACAGGTTTGACCATGGGTGCTAGACACGGGCGTGTCAAACACCCGTG
1 TTAATTTGACAGGTTCGACCATAGGTGCAAGACACGGGCGTGTCAAACACCCGTG
* * * *** *
34125813 TTAATTTGACAGGTTCGACCATAGTTTCAAGGCACGGGCGTGTTGCACGCCCGTG
1 TTAATTTGACAGGTTCGACCATAGGTGCAAGACACGGGCGTGTCAAACACCCGTG
* *
34125868 TTATTTTGGCAGGTTC
1 TTAATTTGACAGGTTC
34125884 ACCCACGGCT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (55 bp):
TTAATTTGACAGGTTCGACCATAGGTGCAAGACACGGGCGTGTCAAACACCCGTG
Found at i:34132947 original size:10 final size:10
Alignment explanation
Indices: 34132899--34132955 Score: 62
Period size: 10 Copynumber: 5.5 Consensus size: 10
34132889 GAACATGTTG
*
34132899 AATTTTAATT
1 AATTTTGATT
34132909 AATTTT-ATAT
1 AATTTTGAT-T
34132919 CAAATTTTGATT
1 --AATTTTGATT
34132931 AATTTTGATT
1 AATTTTGATT
*
34132941 AATTTTGATA
1 AATTTTGATT
34132951 AATTT
1 AATTT
34132956 GCACAAAGGG
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
9 2 0.05
10 31 0.74
12 7 0.17
13 2 0.05
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (10 bp):
AATTTTGATT
Found at i:34137088 original size:40 final size:40
Alignment explanation
Indices: 34136912--34137134 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
34136902 TCCTCGTTCA
* * * * *
34136912 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34136951 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
34136991 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34137031 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
34137071 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34137111 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34137135 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34144998 original size:40 final size:40
Alignment explanation
Indices: 34144822--34145044 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
34144812 TCCTCGTTCA
* * * * *
34144822 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34144861 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
34144901 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34144941 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
34144981 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34145021 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34145045 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34146737 original size:25 final size:24
Alignment explanation
Indices: 34146709--34146756 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
34146699 CCTTCTCATT
*
34146709 TCTTCACTTCTCTCTCCATT-TTCTC
1 TCTTCA-TTCCCT-TCCATTGTTCTC
34146734 TCTTCATTCCCTTCCATTGTTCT
1 TCTTCATTCCCTTCCATTGTTCT
34146757 TCATTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 6 0.29
24 9 0.43
25 6 0.29
ACGTcount: A:0.08, C:0.38, G:0.02, T:0.52
Consensus pattern (24 bp):
TCTTCATTCCCTTCCATTGTTCTC
Done.