Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 104 of 343
Found at i:34833782 original size:100 final size:100
Alignment explanation
Indices: 34833609--34833843 Score: 346
Period size: 100 Copynumber: 2.3 Consensus size: 100
34833599 TCTATTGTGA
*
34833609 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
34833674 TACTAAGTGCAGGCTATTACGTGTACCAGACTGTT
66 TACTAAGTGCAGGCTATTACGTGTACCAGACTGTT
*
34833709 GGTCGCATGTATAGTACTAAGTGCAGGCTGCTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
* * * *
34833774 TACTAAGTGCAGGCTACTATGCGTACCCGAAAACTG-T
66 TACTAAGTGCAGGCTATTACGTGTA-CC--AGACTGTT
* * * *
34833811 GATCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCGCATGTATAGTACTAAGTGCAGGCTACTA
34833844 CGTGTACCAG
Statistics
Matches: 121, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
100 85 0.70
101 2 0.02
102 29 0.24
103 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (100 bp):
GGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTATTACGTGTACCAGACTGTT
Found at i:34833851 original size:51 final size:51
Alignment explanation
Indices: 34833616--34833843 Score: 345
Period size: 51 Copynumber: 4.5 Consensus size: 51
34833606 TGAGGTCGCA
34833616 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
* * * * * * *
34833667 TGTGTAGTACTAAGTGCAGGCTATTACGTGTA-CC--AGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTG-TGATCACG
* *
34833716 TGTATAGTACTAAGTGCAGGCTGCTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
34833767 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
34833818 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
34833844 CGTGTACCAG
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
48 5 0.03
49 32 0.21
50 4 0.03
51 109 0.70
52 5 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
Found at i:34833897 original size:51 final size:52
Alignment explanation
Indices: 34833614--34833897 Score: 272
Period size: 51 Copynumber: 5.6 Consensus size: 52
34833604 TGTGAGGTCG
*
34833614 CATGTGTAGTACTAAGTGCAGGCTACTAT--GCGTACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGTGTACCC-AAAACTGTGATCA
* * * *
34833665 CGTGTGTAGTACTAAGTGCAGGCTA-T-TACGTGTA-CC-AGACTGTTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGTGTACCCAAAACTG-TGATCA
* * *
34833714 CATGTATAGTACTAAGTGCAGGCTGCTAT--GCGTACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGTGTACCC-AAAACTGTGATCA
* *
34833765 CGTGTGTAGTACTAAGTGCAGGCTACTAT--GCGTACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGTGTACCC-AAAACTGTGATCA
* * * **
34833816 CGTGTGTAGTACTAAGTGCAGGCTAC--TACGTGTA-CC-AGACTGTTGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGTGTACCCAAAACTG-TGATCA
* *
34833865 CATGTGTAGTACTAAGTGTAGGCTTCTATACGT
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGT
34833898 ACCAGATAGC
Statistics
Matches: 197, Mismatches: 23, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
48 10 0.05
49 58 0.29
50 8 0.04
51 116 0.59
52 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (52 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATACGTGTACCCAAAACTGTGATCA
Found at i:34833899 original size:151 final size:151
Alignment explanation
Indices: 34833616--34833900 Score: 516
Period size: 151 Copynumber: 1.9 Consensus size: 151
34833606 TGAGGTCGCA
34833616 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
* *
34833681 TGCAGGCTATTACGTGTACCAGACTGTTGGTCGCATGTATAGTACTAAGTGCAGGCTGCTATGCG
66 TGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTATAGTACTAAGTGCAGGCTGCTATACG
34833746 TACCCGAAAACTGTGATCACG
131 TACCCGAAAACTGTGATCACG
34833767 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
* * * *
34833832 TGCAGGCTACTACGTGTACCAGACTGTTGGTTGCATGTGTAGTACTAAGTGTAGGCTTCTATACG
66 TGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTATAGTACTAAGTGCAGGCTGCTATACG
34833897 TACC
131 TACC
34833901 AGATAGCTTC
Statistics
Matches: 128, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
151 128 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
TGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTATAGTACTAAGTGCAGGCTGCTATACG
TACCCGAAAACTGTGATCACG
Found at i:34837039 original size:54 final size:55
Alignment explanation
Indices: 34836975--34837107 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 55
34836965 GTTTAAGGAT
* * * * * *
34836975 ACCAAGTAAGACCATGCCAAGGCACGACATTGGTACA-TTCTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGCACGACATTGATAAACTACTACAAAGCAAAGAA
* * * * * * *
34837029 ATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAAGCAAAGAT
1 ACCATGTAAGACCATGCCAAGGCACGACATTGATAAACTACTACAAAGCAAAGAA
34837084 ACCATGTAAGACCATGCCAAGGCA
1 ACCATGTAAGACCATGCCAAGGCA
34837108 TGGCAATGGT
Statistics
Matches: 62, Mismatches: 16, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
54 29 0.47
55 33 0.53
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.18
Consensus pattern (55 bp):
ACCATGTAAGACCATGCCAAGGCACGACATTGATAAACTACTACAAAGCAAAGAA
Found at i:34837163 original size:53 final size:54
Alignment explanation
Indices: 34836969--34837175 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
34836959 ATTAGGGTTT
* * * * * *
34836969 AAGGATACCAAGTAAGACCATGCCAAGGCACGACATTGGTACA-TTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTA-AGTTCTATAAGGC
* * * * * * * *
34837023 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * *
34837078 AAAGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
34837131 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
34837176 AAAAAGGAAA
Statistics
Matches: 124, Mismatches: 27, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
53 46 0.37
54 36 0.29
55 42 0.34
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:34856068 original size:58 final size:58
Alignment explanation
Indices: 34855978--34856094 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
34855968 TCCCTAAGTG
34855978 AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
1 AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
*
34856036 AACCAAAGTCATCAAAACCTCCATCCACCTGATTGCATTCCTCCAACACCTGTCTAAA
1 AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
34856094 A
1 A
34856095 TTCTCCATTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.36, G:0.06, T:0.22
Consensus pattern (58 bp):
AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
Found at i:34861678 original size:180 final size:181
Alignment explanation
Indices: 34861376--34861737 Score: 699
Period size: 180 Copynumber: 2.0 Consensus size: 181
34861366 AAGACCTCCC
34861376 CCCCTAAACAGCCAGATGAGGATGTGCCACGAGGTATGGCACCGATGAGAGTCGGTAAAGCCCTT
1 CCCCTAAACAGCCAGATGAGGATGTGCCACGAGGTATGGCACCGATGAGAGTCGGTAAAGCCCTT
34861441 GTAGATAAGCTTAGAAAGCATGGGCCTGAGGAATTCAGAGCTAAATTCGATGATGACGCTG-AAA
66 GTAGATAAGCTTAGAAAGCATGGGCCTGAGGAATTCAGAGCTAAATTCGATGATGACGCTGAAAA
34861505 AGCAGAGTTCTGGCTCGAAAATACTACACGGGTACAAGATGATTTGTCATG
131 AGCAGAGTTCTGGCTCGAAAATACTACACGGGTACAAGATGATTTGTCATG
*
34861556 CCCCTAAATAGCCAGATGAGGATGTGCCACGAGGTATGGCACCGATGAGAGTCGGTAAAGCCCTT
1 CCCCTAAACAGCCAGATGAGGATGTGCCACGAGGTATGGCACCGATGAGAGTCGGTAAAGCCCTT
34861621 GTAGATAAGCTTAGAAAGCATGGGCCTGAGGAATTCAGAGCTAAATTCGATGATGACGCTGAAAA
66 GTAGATAAGCTTAGAAAGCATGGGCCTGAGGAATTCAGAGCTAAATTCGATGATGACGCTGAAAA
*
34861686 AGCAGAGTTCTGGCTCGAAAATACTACACGGGTACTAGATGATTTGTCATG
131 AGCAGAGTTCTGGCTCGAAAATACTACACGGGTACAAGATGATTTGTCATG
34861737 C
1 C
34861738 ACACCCGAGA
Statistics
Matches: 179, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
180 125 0.70
181 54 0.30
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (181 bp):
CCCCTAAACAGCCAGATGAGGATGTGCCACGAGGTATGGCACCGATGAGAGTCGGTAAAGCCCTT
GTAGATAAGCTTAGAAAGCATGGGCCTGAGGAATTCAGAGCTAAATTCGATGATGACGCTGAAAA
AGCAGAGTTCTGGCTCGAAAATACTACACGGGTACAAGATGATTTGTCATG
Found at i:34872786 original size:28 final size:28
Alignment explanation
Indices: 34872746--34872804 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
34872736 AAGTAATACG
34872746 TACCTGAACATTTTAAATGTATAGTACT
1 TACCTGAACATTTTAAATGTATAGTACT
34872774 TACCTGAACATTTTAAATGTATAGTACT
1 TACCTGAACATTTTAAATGTATAGTACT
34872802 TAC
1 TAC
34872805 TCGACGATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (28 bp):
TACCTGAACATTTTAAATGTATAGTACT
Found at i:34872978 original size:39 final size:39
Alignment explanation
Indices: 34872895--34872991 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
34872885 TGAAATCAAT
*
34872895 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
34872933 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
34872972 TTCCAGCACGTAGCCTGCGG
1 TACCAGCACGAAGCCTGCGG
34872992 ACCTTAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 14 0.29
39 35 0.71
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:34873010 original size:78 final size:78
Alignment explanation
Indices: 34872928--34873079 Score: 182
Period size: 78 Copynumber: 1.9 Consensus size: 78
34872918 TTAAACCCGG
* * * * *
34872928 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
34872991 GACCTTAAGTCAGGA
64 GACCCTAAGTCAGGA
* * * *
34873006 TATAATTCTAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
34873071 CCCTAAGTC
66 CCCTAAGTC
34873080 CGGACATACA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 4 0.06
78 58 0.94
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCAGGA
Found at i:34873080 original size:39 final size:39
Alignment explanation
Indices: 34872962--34873083 Score: 190
Period size: 39 Copynumber: 3.1 Consensus size: 39
34872952 GGACTTTAGC
* * * *
34872962 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
34873001 CAGGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
34873040 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
34873079 CCGGA
1 CCGGA
34873084 CATACATCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:34881949 original size:49 final size:51
Alignment explanation
Indices: 34881832--34881967 Score: 195
Period size: 49 Copynumber: 2.7 Consensus size: 51
34881822 CTAACCATCT
* * *
34881832 GATACACGTAGTAGCTTGCACTTAGTACTACACACGCGATCGAAGTTATCG
1 GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCC
* * * *
34881883 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCC
1 GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCC
34881932 GATACACGTAGTAGCCTGCACTTAGTACTACACACG
1 GATACACGTAGTAGCCTGCACTTAGTACTACACACG
34881968 TGACCTCACA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 37 0.50
50 3 0.04
51 34 0.46
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (51 bp):
GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCC
Found at i:34883699 original size:46 final size:46
Alignment explanation
Indices: 34883568--34883787 Score: 153
Period size: 46 Copynumber: 4.7 Consensus size: 46
34883558 CGGGTTATTT
**
34883568 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAAGAC
* * * * *
34883616 GAGAGCTAGTGTAAGACATGTCTGGGACATACGTCGGCCTCAAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGAC
* * *
34883662 GTA-AGCCAATGTAAGACATGTCTGGTACATGCATCGGC-T-ATGA-
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGAC
* * * * * * *
34883705 GATGTGTCAGTGTAAGACCATGTCTAGAACATGGTATCGGCA-CGGATATAT
1 GA-GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATC--A-AGAC
*
34883756 GAGAGCTAGTGTAAGACCATGTCTGGGACATG
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATG
34883788 GCGTCGGCCT
Statistics
Matches: 135, Mismatches: 26, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.10
45 13 0.10
46 48 0.36
47 15 0.11
48 15 0.11
49 2 0.01
50 25 0.19
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGAC
Found at i:34889226 original size:43 final size:43
Alignment explanation
Indices: 34889164--34889249 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
34889154 CAACAAAGGT
* *
34889164 TAGATCGGATCATATTCATCACACTACGATAGATTTATATGGC
1 TAGATCGAATCATACTCATCACACTACGATAGATTTATATGGC
34889207 TAGATCGAATCATACTCATCACACTACGATAGATTTATATGGC
1 TAGATCGAATCATACTCATCACACTACGATAGATTTATATGGC
34889250 ATGTATTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (43 bp):
TAGATCGAATCATACTCATCACACTACGATAGATTTATATGGC
Found at i:34892162 original size:39 final size:40
Alignment explanation
Indices: 34892062--34892246 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
34892052 TCGAATGATG
* *
34892062 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAT
*
34892101 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAT
* * * *
34892142 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
34892181 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* * *
34892220 AACCGGGCTATGTCCCGAAAGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
34892247 AATGAGTAGT
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:34892227 original size:79 final size:81
Alignment explanation
Indices: 34892063--34892244 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 81
34892053 CGAATGATGT
* *
34892063 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
34892127 GTGCAAGTTACTAATT
66 GTGCAAGTTACTAATA
* * * * **
34892143 TCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
34892205 TGTGCGAGTTACT-ATAA
65 TGTGCAAGTTACTAAT-A
* *
34892222 CCGGGCTATGTCCCGAAAGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
34892245 TGAATGAGTA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.66
80 26 0.31
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCAAGTTACTAATA
Found at i:34899912 original size:39 final size:40
Alignment explanation
Indices: 34899811--34899987 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
34899801 TCGAATGATG
* * *
34899811 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
34899850 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
34899891 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
34899930 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
34899969 AACCGGGCTATGTCCCGAA
1 -TCCGGGCTAAGTCCCGAA
34899988 ATCATTTGAA
Statistics
Matches: 118, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.31
40 72 0.61
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:34899947 original size:79 final size:80
Alignment explanation
Indices: 34899811--34899987 Score: 218
Period size: 79 Copynumber: 2.2 Consensus size: 80
34899801 TCGAATGATG
* *
34899811 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
34899876 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAT
* * * **
34899891 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
34899953 TTGTGCGAGTTACT-AT
64 TTGTGCGAGTTACTAAT
* *
34899969 AACCGGGCTATGTCCCGAA
1 -TCCGGGCTAAGTCCCGAA
34899988 ATCATTTGAA
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.04
79 58 0.69
80 23 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:34900017 original size:79 final size:79
Alignment explanation
Indices: 34899864--34900028 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
34899854 GGACTAAGAT
* * **
34899864 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
*
34899929 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
34899943 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAATCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAGCATTGGAACGAGTTA-C
* *
34900006 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34900022 CCGAAGG
1 CCGAAGG
34900029 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34902590 original size:47 final size:47
Alignment explanation
Indices: 34902527--34902732 Score: 333
Period size: 47 Copynumber: 4.4 Consensus size: 47
34902517 CCCTTCGGGA
* * *
34902527 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
34902574 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* *
34902621 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TACGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTA-GGC
*
34902668 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
34902715 CTTATCACATATACACAC
1 CTTATCACATATATACAC
34902733 CTTGTACATC
Statistics
Matches: 150, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
46 2 0.01
47 146 0.97
48 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:34902688 original size:94 final size:94
Alignment explanation
Indices: 34902527--34902732 Score: 367
Period size: 94 Copynumber: 2.2 Consensus size: 94
34902517 CCCTTCGGGA
* *
34902527 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATACGGCCTTATCACATATATACAC
34902592 TTTCACATCCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
*
34902621 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATACGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATACGGCCTTATCACATATATACAC
*
34902686 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
*
34902715 CTTATCACATATACACAC
1 CTTATCACATATATACAC
34902733 CTTGTACATC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 107 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATACGGCCTTATCACATATATACAC
TTTCACATCCATCACATCGGCCATTAGGC
Found at i:34906437 original size:29 final size:31
Alignment explanation
Indices: 34906405--34906467 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
34906395 AATTAAAAAA
34906405 ACTAAATTATTAA-AAAT-AAAAATACATAC
1 ACTAAATTATTAATAAATAAAAAATACATAC
* **
34906434 ACTAAATTCTTAATTTATAAAAAATACATAC
1 ACTAAATTATTAATAAATAAAAAATACATAC
34906465 ACT
1 ACT
34906468 TATACTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 12 0.41
30 2 0.07
31 15 0.52
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.32
Consensus pattern (31 bp):
ACTAAATTATTAATAAATAAAAAATACATAC
Found at i:34910925 original size:5 final size:5
Alignment explanation
Indices: 34910915--34910952 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
34910905 GAATTGATAA
*
34910915 ATTTT ATTTT ATTTT A--TT ATTTT AATTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
34910953 TTTAAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 3 0.10
5 26 0.90
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:34910938 original size:18 final size:18
Alignment explanation
Indices: 34910915--34910957 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
34910905 GAATTGATAA
*
34910915 ATTTTATTTTATTTTATT
1 ATTTTAATTTATTTTATT
34910933 ATTTTAATTTATTTTATT
1 ATTTTAATTTATTTTATT
*
34910951 TTTTTAA
1 ATTTTAA
34910958 ATTAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTAATTTATTTTATT
Found at i:34910962 original size:23 final size:23
Alignment explanation
Indices: 34910917--34910962 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
34910907 ATTGATAAAT
**
34910917 TTTATTTTATTTTATTATTTTAA
1 TTTATTTTATTTTATTAAATTAA
*
34910940 TTTATTTTATTTTTTTAAATTAA
1 TTTATTTTATTTTATTAAATTAA
34910963 ATAAAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTATTTTATTTTATTAAATTAA
Found at i:34914732 original size:15 final size:15
Alignment explanation
Indices: 34914712--34914741 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34914702 TTTAATCCTT
*
34914712 TACAAATTATAAAAA
1 TACAAACTATAAAAA
34914727 TACAAACTATAAAAA
1 TACAAACTATAAAAA
34914742 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (15 bp):
TACAAACTATAAAAA
Found at i:34914965 original size:17 final size:17
Alignment explanation
Indices: 34914943--34915013 Score: 51
Period size: 17 Copynumber: 4.2 Consensus size: 17
34914933 CAAATACCCG
34914943 TATTTATATATTTAAAA
1 TATTTATATATTTAAAA
*
34914960 TATTTAT-TA--TGAAA
1 TATTTATATATTTAAAA
* *
34914974 TATCTATGATTTTTTAAAA
1 TATTTAT-A-TATTTAAAA
*
34914993 TATATATAT-TATTAAAA
1 TATTTATATAT-TTAAAA
34915010 TATT
1 TATT
34915014 AATAAATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
14 10 0.24
16 3 0.07
17 18 0.43
18 1 0.02
19 10 0.24
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (17 bp):
TATTTATATATTTAAAA
Found at i:34915193 original size:28 final size:29
Alignment explanation
Indices: 34915143--34915203 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
34915133 GTATGTTTAA
34915143 TAATATTGAAAATTATAACATTTGATT-T
1 TAATATTGAAAATTATAACATTTGATTAT
* * *
34915171 TAATATTGTTAAATTTTAA-ATTTTATTAT
1 TAATATTG-AAAATTATAACATTTGATTAT
34915200 TAAT
1 TAAT
34915204 TTAATAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (29 bp):
TAATATTGAAAATTATAACATTTGATTAT
Found at i:34915852 original size:19 final size:19
Alignment explanation
Indices: 34915830--34915868 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
34915820 TTTAGATATC
*
34915830 TATTTCATTT-TAAATAGTA
1 TATTTAATTTCTAAA-AGTA
34915849 TATTTAATTTCTAAAAGTA
1 TATTTAATTTCTAAAAGTA
34915868 T
1 T
34915869 TGATGAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (19 bp):
TATTTAATTTCTAAAAGTA
Found at i:34917182 original size:23 final size:23
Alignment explanation
Indices: 34917156--34917201 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
34917146 TTAAATTGTC
34917156 AAATAATTATATATAAACTATGA
1 AAATAATTATATATAAACTATGA
34917179 AAATAATTATATATAAACTATGA
1 AAATAATTATATATAAACTATGA
34917202 CACGTTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (23 bp):
AAATAATTATATATAAACTATGA
Found at i:34917296 original size:21 final size:21
Alignment explanation
Indices: 34917257--34917296 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
34917247 GATAAGAATT
* *
34917257 TAGAATTGAGTTTTTTAATGC
1 TAGAATTGAGTATTATAATGC
*
34917278 TAGAATTTAGTATTATAAT
1 TAGAATTGAGTATTATAAT
34917297 TAAAGCATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (21 bp):
TAGAATTGAGTATTATAATGC
Found at i:34917832 original size:16 final size:17
Alignment explanation
Indices: 34917811--34917845 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
34917801 TTGGACTCTC
34917811 AAAAAATTCAAAAA-AA
1 AAAAAATTCAAAAATAA
34917827 AAAAAATTCAAAAATAA
1 AAAAAATTCAAAAATAA
34917844 AA
1 AA
34917846 GGACTCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAAATTCAAAAATAA
Found at i:34918261 original size:22 final size:22
Alignment explanation
Indices: 34918232--34918286 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
34918222 TAACTAAATT
* *
34918232 TAAAAAAATTAAGGACC-AATA
1 TAAAAAAATTAAGAACCAAAAA
34918253 TAATAAAAATT-AGAACCAAAAA
1 TAA-AAAAATTAAGAACCAAAAA
34918275 TAAAAAAATTAA
1 TAAAAAAATTAA
34918287 AAGAATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.20
Consensus pattern (22 bp):
TAAAAAAATTAAGAACCAAAAA
Found at i:34918270 original size:21 final size:20
Alignment explanation
Indices: 34918235--34918280 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 20
34918225 CTAAATTTAA
*
34918235 AAAAATTAAGGACCAATATAAT
1 AAAAATTAAGAACCAA-A-AAT
34918257 AAAAATT-AGAACCAAAAAT
1 AAAAATTAAGAACCAAAAAT
34918276 AAAAA
1 AAAAA
34918281 AATTAAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 1 0.04
21 7 0.30
22 7 0.30
ACGTcount: A:0.67, C:0.09, G:0.07, T:0.17
Consensus pattern (20 bp):
AAAAATTAAGAACCAAAAAT
Found at i:34918466 original size:8 final size:8
Alignment explanation
Indices: 34918453--34918490 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
34918443 TTAATTCATC
34918453 AAAATATA
1 AAAATATA
34918461 AAAATATA
1 AAAATATA
* *
34918469 AAAAAATG
1 AAAATATA
34918477 AAAATATA
1 AAAATATA
34918485 AAAATA
1 AAAATA
34918491 ATATAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (8 bp):
AAAATATA
Found at i:34926953 original size:40 final size:40
Alignment explanation
Indices: 34926883--34927100 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
34926873 AAACCAAGTA
* * *
34926883 CCTTTGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34926922 CCTTCAGGACTTAGCCCGGACATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34926962 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34927002 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34927042 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
34927082 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34927101 TTACCATCCG
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 153 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34935024 original size:40 final size:40
Alignment explanation
Indices: 34934955--34935172 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
34934945 AAACCAAGTA
* *
34934955 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
34934994 CCTTCGGGACTTAGCCCGGATATAGTTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34935034 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34935074 CCTTCGGGACTTATCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34935114 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
34935154 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34935173 TTACCATCCG
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34938046 original size:131 final size:130
Alignment explanation
Indices: 34937906--34938298 Score: 464
Period size: 131 Copynumber: 3.0 Consensus size: 130
34937896 AAATCAATTG
* * * * * * *
34937906 ACTCAAATAAAATTATTCATAATCTTGAAATTATTGAACTTAGGTTGCTATCTTGAATTAGTGAA
1 ACTCGAATAAAATTGTTCATGATCTTG-AATTAATGAACTTAGGTTGCAATCTTGAATCAGAGAA
* * * * * * **
34937971 CCTTAGTAATATCAACCACGATCTTAAATCAACGAGTTGTTCAAAGTAACGATATTAAATTAGCT
65 CCTTAATAATATCAACTACGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGCT
34938036 A
130 A
*
34938037 ACTCGAATAAAATTGTTCATGATTTTGAATCTAATGAACTTAGGTTGCAATCTTGAATCAGAGAA
1 ACTCGAATAAAATTGTTCATGATCTTGAAT-TAATGAACTTAGGTTGCAATCTTGAATCAGAGAA
* * * * * * * *
34938102 CCTTAATAATATCAAATGCGGTATTAAATTAGCAAGATGTTTGCAGTAGCAATATTAAATCAGCT
65 CCTTAATAATATCAACTACGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGCT
34938167 A
130 A
* * *
34938168 ACTCGAATAAAATTGGTGATGATCTTGAATTGAATGAACTTAAGTTGCAATCTTGAATCA-ACGA
1 ACTCGAATAAAATTGTTCATGATCTTGAATT-AATGAACTTAGGTTGCAATCTTGAATCAGA-GA
* * * *
34938232 ACCTTAATAATATCAACTACGATATTAAATTAGCGAGCTGTTTGGAGTAATGATCTTAAATTAGC
64 ACCTTAATAATATCAACTACGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGC
34938297 TA
129 TA
34938299 TCACAAAGAG
Statistics
Matches: 220, Mismatches: 39, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
130 5 0.02
131 215 0.98
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (130 bp):
ACTCGAATAAAATTGTTCATGATCTTGAATTAATGAACTTAGGTTGCAATCTTGAATCAGAGAAC
CTTAATAATATCAACTACGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGCTA
Found at i:34941303 original size:42 final size:43
Alignment explanation
Indices: 34941177--34941336 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 43
34941167 TAATTCAGTA
* *
34941177 TCGATGCCTCTGTCCCA-AACAGGGTCTTATACG-AAA--TCAGAT
1 TCGATGCCTGTGTCCCAGAAC--GGTCTTACACGTAAATTTCA-AT
* * *
34941219 ACGATGCC-GATGTCCCACACATGGTCTTACACGTAAATTTCAAT
1 TCGATGCCTG-TGTCCCAGA-ACGGTCTTACACGTAAATTTCAAT
34941263 TCGATGCCTGTGTCCCAGAACGGTCTT-CACGTAAATTTCAAT
1 TCGATGCCTGTGTCCCAGAACGGTCTTACACGTAAATTTCAAT
34941305 TCGATGCCTGTGTCCCAGAACGGTCTTACACG
1 TCGATGCCTGTGTCCCAGAACGGTCTTACACG
34941337 ATAGTTCAGA
Statistics
Matches: 103, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
42 66 0.64
43 15 0.15
44 18 0.17
45 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (43 bp):
TCGATGCCTGTGTCCCAGAACGGTCTTACACGTAAATTTCAAT
Found at i:34944150 original size:48 final size:48
Alignment explanation
Indices: 34944079--34944560 Score: 793
Period size: 48 Copynumber: 10.0 Consensus size: 48
34944069 CAAGATAAAT
* * *
34944079 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
34944127 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
34944175 ATATACATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
34944223 ATATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
34944271 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
34944319 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
34944367 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
34944415 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
34944463 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
34944511 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
34944559 AT
1 AT
34944561 GTGTGTATAT
Statistics
Matches: 407, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 407 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:34944751 original size:37 final size:37
Alignment explanation
Indices: 34944701--34944803 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
34944691 GGAAATATAT
34944701 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34944738 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
34944775 TCCGGGTGAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
34944804 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34946882 original size:51 final size:54
Alignment explanation
Indices: 34946788--34946900 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 54
34946778 AACACTCCAG
**
34946788 GAAAGGAACACCTTTGTGGCATAATATGAAAGGAATGCATTTGTGGCA-A-TAT
1 GAAAGGAACACCTTTGTGGCATAATATGAAAGGAACACATTTGTGGCAGATTAT
* *
34946840 GAAAGGAACACC-TTGTGGCGTAATATTGAAA-GAACACCTTTGTGGCAGATTAT
1 GAAAGGAACACCTTTGTGGCATAATA-TGAAAGGAACACATTTGTGGCAGATTAT
34946893 GAAAGGAA
1 GAAAGGAA
34946901 TTCTTTTGTG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
51 25 0.46
52 18 0.33
53 11 0.20
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (54 bp):
GAAAGGAACACCTTTGTGGCATAATATGAAAGGAACACATTTGTGGCAGATTAT
Found at i:34946906 original size:26 final size:26
Alignment explanation
Indices: 34946788--34946911 Score: 94
Period size: 27 Copynumber: 4.7 Consensus size: 26
34946778 AACACTCCAG
* *
34946788 GAAAGGAACACCTTTGTGGCATAATAT
1 GAAAGGAATA-CTTTGTGGCAGAATAT
*
34946815 GAAAGGAATGCATTTGTGGC--AATAT
1 GAAAGGAATAC-TTTGTGGCAGAATAT
* *
34946840 GAAAGGAACACCTTGTGGC-GTAATATT
1 GAAAGGAATACTTTGTGGCAG-AATA-T
* *
34946867 GAAA-GAACACCTTTGTGGCAGATTAT
1 GAAAGGAATA-CTTTGTGGCAGAATAT
*
34946893 GAAAGGAATTCTTTTGTGG
1 GAAAGGAATAC-TTTGTGG
34946912 AAAACTCCAA
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
24 7 0.09
25 14 0.17
26 16 0.20
27 42 0.52
28 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (26 bp):
GAAAGGAATACTTTGTGGCAGAATAT
Found at i:34956771 original size:42 final size:43
Alignment explanation
Indices: 34956698--34956807 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 43
34956688 GATTTGAAAT
* *
34956698 TTACGTGTAAGACCATGTATGGGACATTGGCATC-ATATATGAA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATCAATATATG-A
* * * *
34956741 TT-TGTGTAAGACCCTGTCTGGGGCAGTGGCATCAATATTTGA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATCAATATATGA
*
34956783 TTACATGTAAGACCATGTCTGGGAC
1 TTACGTGTAAGACCATGTCTGGGAC
34956808 GTTGTCATTG
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.53
43 26 0.47
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACAGTGGCATCAATATATGA
Found at i:34965564 original size:13 final size:13
Alignment explanation
Indices: 34965546--34965585 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
34965536 GGAGTAATCG
34965546 CACACGGGCGTGT
1 CACACGGGCGTGT
34965559 CACACGGGCGTGT
1 CACACGGGCGTGT
34965572 CACACGGGCGTGT
1 CACACGGGCGTGT
34965585 C
1 C
34965586 CCTGCTGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.33, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:34966726 original size:14 final size:14
Alignment explanation
Indices: 34966707--34966745 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
34966697 TAAATTTTTA
34966707 TTTTCTTTTCTAAG
1 TTTTCTTTTCTAAG
*
34966721 TTTTCTTTTCTAGG
1 TTTTCTTTTCTAAG
34966735 TTTTCTTTTCT
1 TTTTCTTTTCT
34966746 TCGTTCCTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (14 bp):
TTTTCTTTTCTAAG
Found at i:34969444 original size:103 final size:104
Alignment explanation
Indices: 34969264--34969528 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
34969254 AACCGTTATT
* * * *
34969264 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
* * *
34969329 ATCAGCACATAGCAACCCCCTTTTTA-TTTTCAGAGATAC
66 ATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATAC
34969368 GGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
34969432 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
34969471 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
34969529 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
102 4 0.03
103 93 0.62
104 52 0.35
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:34969890 original size:30 final size:29
Alignment explanation
Indices: 34969856--34969920 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
34969846 TAATCCACCA
34969856 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
34969886 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
34969916 CCCAA
1 CCCAA
34969921 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:34969894 original size:31 final size:30
Alignment explanation
Indices: 34969863--34969920 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
34969853 CCACCCAACT
34969863 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
34969893 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
34969921 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:34976911 original size:104 final size:104
Alignment explanation
Indices: 34976732--34976996 Score: 408
Period size: 104 Copynumber: 2.6 Consensus size: 104
34976722 AACCGTTATT
* * * *
34976732 GGTGGATCTCGCACTTAGCACCACCACTTAATC-GGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
* * *
34976796 ATCAGCACATAGCAACCCCCTTTTTA-TTTTCAGAGATAC
66 ATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATAC
*
34976835 GGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
34976900 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
34976939 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
34976997 TTATGTACAA
Statistics
Matches: 148, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
103 33 0.22
104 115 0.78
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:34977358 original size:30 final size:29
Alignment explanation
Indices: 34977324--34977388 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
34977314 TAATCCACCA
34977324 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
34977354 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
34977384 CCCAA
1 CCCAA
34977389 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:34977362 original size:31 final size:30
Alignment explanation
Indices: 34977331--34977388 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
34977321 CCACCCAACT
34977331 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
34977361 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
34977389 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:34988236 original size:40 final size:40
Alignment explanation
Indices: 34987984--34988229 Score: 431
Period size: 40 Copynumber: 6.2 Consensus size: 40
34987974 AACCCAAGTA
* *
34987984 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34988023 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34988063 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34988103 CCTTCAGGACTTAGCCCGGATATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34988143 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34988183 CCTTCGGGACTTAGCCCGGATAAAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34988223 CCTTCGG
1 CCTTCGG
34988230 ATCTTAGTCC
Statistics
Matches: 197, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
39 13 0.07
40 184 0.93
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34992580 original size:25 final size:25
Alignment explanation
Indices: 34992551--34992598 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
34992541 TTATAATATG
* * *
34992551 AAAATGACCGTTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
34992576 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
34992599 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:34992649 original size:9 final size:9
Alignment explanation
Indices: 34992637--34992713 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
34992627 TTTGATAAAC
34992637 ATGATATGT
1 ATGATATGT
*
34992646 ATGATATGCAC
1 ATGATATG--T
34992657 ATGATATGT
1 ATGATATGT
*
34992666 ATGATATGCAG
1 ATGATATG--T
*
34992677 ATGACATGT
1 ATGATATGT
*
34992686 ATGATATGCAC
1 ATGATATG--T
34992697 ATGATATGT
1 ATGATATGT
34992706 ATGATATG
1 ATGATATG
34992714 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:34992662 original size:11 final size:11
Alignment explanation
Indices: 34992646--34992717 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
34992636 CATGATATGT
34992646 ATGATATGCAC
1 ATGATATGCAC
*
34992657 ATGATATG--T
1 ATGATATGCAC
*
34992666 ATGATATGCAG
1 ATGATATGCAC
* *
34992677 ATGACATG--T
1 ATGATATGCAC
34992686 ATGATATGCAC
1 ATGATATGCAC
*
34992697 ATGATATG--T
1 ATGATATGCAC
34992706 ATGATATGCAC
1 ATGATATGCAC
34992717 A
1 A
34992718 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:34992725 original size:20 final size:20
Alignment explanation
Indices: 34992635--34992717 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
34992625 ATTTTGATAA
34992635 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
34992655 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
34992675 AGATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
34992695 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
34992715 ACA
1 ACA
34992718 CGAGATGTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:34992909 original size:25 final size:24
Alignment explanation
Indices: 34992770--34992913 Score: 204
Period size: 24 Copynumber: 6.0 Consensus size: 24
34992760 GAGGAAGTGC
*
34992770 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
34992794 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
34992818 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
34992842 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
34992865 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
34992890 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
34992914 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
23 28 0.25
24 52 0.47
25 21 0.19
26 9 0.08
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:34993141 original size:31 final size:31
Alignment explanation
Indices: 34993106--34993169 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
34993096 CGTTTACCGT
34993106 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
34993137 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
34993168 AA
1 AA
34993170 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:34996227 original size:13 final size:13
Alignment explanation
Indices: 34996209--34996233 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34996199 AGAAACGATA
34996209 AAATTTTCACATG
1 AAATTTTCACATG
34996222 AAATTTTCACAT
1 AAATTTTCACAT
34996234 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCACATG
Found at i:35005079 original size:15 final size:16
Alignment explanation
Indices: 35005048--35005081 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
35005038 GAATTTGGAC
35005048 CTCGTACTGACCGTAT
1 CTCGTACTGACCGTAT
*
35005064 CTCGTAGTGA-CGTAT
1 CTCGTACTGACCGTAT
35005079 CTC
1 CTC
35005082 ATTCTGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.18, C:0.29, G:0.21, T:0.32
Consensus pattern (16 bp):
CTCGTACTGACCGTAT
Found at i:35008307 original size:39 final size:40
Alignment explanation
Indices: 35008264--35008479 Score: 291
Period size: 39 Copynumber: 5.5 Consensus size: 40
35008254 CTTCGGAACT
* * ** * *
35008264 TTAAGCCCGGA-TATATTTCCAGCACGTAACCTGCGAACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
* *
35008303 TTAAGTTCAGATTATAATTCCAGCATATAGCCTGCGGACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
*
35008343 TTAAGTCCGGA-TATATTTCCAGCATATAGCCTGCGGACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
* *
35008382 TTAAGTCTGGA-TATAA-TCCAGCATATAGCCTGTGGA-C
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
35008419 TTAAGTCCGGATTATAATT-CAGCATATAGCCTGCGGACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
35008458 TTAAGTCCGGATTATAATTCCA
1 TTAAGTCCGGATTATAATTCCA
35008480 AATATCATCC
Statistics
Matches: 156, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
37 11 0.07
38 41 0.26
39 70 0.45
40 34 0.22
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (40 bp):
TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
Found at i:35008445 original size:76 final size:78
Alignment explanation
Indices: 35008264--35008475 Score: 279
Period size: 76 Copynumber: 2.7 Consensus size: 78
35008254 CTTCGGAACT
* * ** * * *
35008264 TTAAGCCCGGATATATTTCCAGCACGTAACCTGCGAACCTTAAGT-TCAGATTATAATTCCAGCA
1 TTAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGTCT-GGATTATAA-TCCAGCA
35008328 TATAGCCTGCGGACC
64 TATAGCCTGCGGACC
*
35008343 TTAAGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTTAAGTCTGGA-TATAATCCAGCATA
1 TTAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGTCTGGATTATAATCCAGCATA
*
35008407 TAGCCTGTGGA-C
66 TAGCCTGCGGACC
*
35008419 TTAAGTCCGGATTATAATT-CAGCATATAGCCTGCGGACCTTAAGTCCGGATTATAAT
1 TTAAGTCCGGA-TATAATTCCAGCATATAGCCTGCGGACCTTAAGTCTGGATTATAAT
35008476 TCCAAATATC
Statistics
Matches: 121, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
76 42 0.35
77 31 0.26
78 5 0.04
79 42 0.35
80 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (78 bp):
TTAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGTCTGGATTATAATCCAGCATA
TAGCCTGCGGACC
Found at i:35012784 original size:43 final size:42
Alignment explanation
Indices: 35012723--35012831 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
35012713 AGTGCTAATG
* *
35012723 TCCCAGAC-GAGGTCTTACATGTAATCAAATATCGATGCCACTA
1 TCCCAGACAG-GGTCTTACACGTAATCAAATA-CGATGCCAATA
* * *
35012766 TCCCAGACAGGGTCTTACACGAAATCATATACGATGCCAATG
1 TCCCAGACAGGGTCTTACACGTAATCAAATACGATGCCAATA
* *
35012808 TCCCTGACATGGTCTTACACGTAA
1 TCCCAGACAGGGTCTTACACGTAA
35012832 ATCTCAAATC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 30 0.53
43 26 0.46
44 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGTAATCAAATACGATGCCAATA
Found at i:35012822 original size:42 final size:42
Alignment explanation
Indices: 35012719--35012858 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 42
35012709 ATACAGTGCT
* *
35012719 AATGTCCCAGACGAGGTCTTACATGTAATCAAATATCGATGCC
1 AATGTCCCAGAC-AGGTCTTACACGAAATCAAATATCGATGCC
* * *
35012762 ACTATCCCAGACAGGGTCTTACACGAAATCATATA-CGATGCC
1 AATGTCCCAGACA-GGTCTTACACGAAATCAAATATCGATGCC
* * *
35012804 AATGTCCCTGACATGGTCTTACACGTAAATCTCAA-ATCGATTCC
1 AATGTCCCAGACA-GGTCTTACACG-AAATC-AAATATCGATGCC
*
35012848 AACGTCCCAGA
1 AATGTCCCAGA
35012859 TGTGGTTTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.37
43 34 0.43
44 16 0.20
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
AATGTCCCAGACAGGTCTTACACGAAATCAAATATCGATGCC
Found at i:35014861 original size:144 final size:144
Alignment explanation
Indices: 35014601--35014923 Score: 443
Period size: 144 Copynumber: 2.2 Consensus size: 144
35014591 TAAAGTACCA
* * *
35014601 ATGCCATGTCCCTGACATGGTCTTACATGAATC-CACATATCATCGCCAGTGCCATGTCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACA-CAAGCACACATATCATCGCCAGTGCCATGTCCCAAAC
* * *
35014665 ATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCCAGGCATGGTCTTACACTGACA
65 ATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGACA
*
35014730 CACATATAATCGTTG
130 CACATATAATCATTG
* ** *
35014745 ATGCCATGTCCCAAACATGGTCTTACACAAGCACACATATCATCATC-GATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCAG-TGCCATGTCCCAAAC
* * * *
35014809 ATGGTCTTACACAGGCACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTATACAGGCA
65 ATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGACA
* *
35014874 CATATATCATCATTG
130 CACATATAATCATTG
* *
35014889 ATGCCATGTCCCAGACATGGTTTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACA
35014924 ATTAGCACAG
Statistics
Matches: 157, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
143 4 0.03
144 153 0.97
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCAGTGCCATGTCCCAAACA
TGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGACAC
ACATATAATCATTG
Found at i:35014917 original size:96 final size:96
Alignment explanation
Indices: 35014601--35014923 Score: 443
Period size: 96 Copynumber: 3.4 Consensus size: 96
35014591 TAAAGTACCA
* * **
35014601 ATGCCATGTCCCTGACATGGTCTTACATGAATC-CACATATCATCGCC-AGTGCCATGTCCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCGCCGA-TGCCATGTCCCAAA
* *
35014664 CATGGTCTTACACTGGCACACATATCATCACCG
64 CATGGTCTTACACAGGCACACATATCATCATCG
* * * * **
35014697 ATGCCATGTCCCAGGCATGGTCTTACACTGACACACATATAATCGTTGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCAAACA
*
35014762 TGGTCTTACACAAGCACACATATCATCATCG
66 TGGTCTTACACAGGCACACATATCATCATCG
* *
35014793 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCAAACA
* * *
35014858 TGGTCTTATACAGGCACATATATCATCATTG
66 TGGTCTTACACAGGCACACATATCATCATCG
*
35014889 ATGCCATGTCCCAGACATGGTTTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
35014924 ATTAGCACAG
Statistics
Matches: 200, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 1 0.00
96 198 0.99
97 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCAAACA
TGGTCTTACACAGGCACACATATCATCATCG
Found at i:35014919 original size:48 final size:48
Alignment explanation
Indices: 35014601--35014923 Score: 398
Period size: 48 Copynumber: 6.7 Consensus size: 48
35014591 TAAAGTACCA
* * ** * *
35014601 ATGCCATGTCCCTGACATGGTCTTACATGAATC-CACATATCATC-GCC
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCATCG
* * *
35014648 AGTGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCACCG
1 A-TGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCATCG
* * * * * *
35014697 ATGCCATGTCCCAGGCATGGTCTTACACTGACACACATATAATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCATCG
* *
35014745 ATGCCATGTCCCAAACATGGTCTTACACAAGCACACATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCATCG
* **
35014793 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCATCG
* * *
35014841 ATGCCATGTCCCAGACATGGTCTTATACAGGCACATATATCATCATTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCATCG
*
35014889 ATGCCATGTCCCAGACATGGTTTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
35014924 ATTAGCACAG
Statistics
Matches: 239, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 235 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCATCG
Found at i:35018880 original size:47 final size:47
Alignment explanation
Indices: 35018801--35018984 Score: 196
Period size: 47 Copynumber: 3.9 Consensus size: 47
35018791 CGGCCACATT
* * *
35018801 ATGAGAGCCAATATAAGACCATATCTAGGACATGGCATCGGCATTGAG
1 ATGA-AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* *
35018849 ACGTAAGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGG-TTATGAG
1 ATG-AAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAG
* * * *
35018895 ATGATAGTCAGTGTAAGACCATGCCTGGGACATGGCATCGAC-TTGAG
1 ATGA-AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* *
35018942 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 ATG-AAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCA
35018985 CTTTACCCAT
Statistics
Matches: 114, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
45 2 0.02
46 24 0.21
47 66 0.58
48 21 0.18
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (47 bp):
ATGAAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
Found at i:35023400 original size:39 final size:38
Alignment explanation
Indices: 35023309--35023423 Score: 124
Period size: 39 Copynumber: 2.9 Consensus size: 38
35023299 TCCAATTTCT
* * * *
35023309 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATATAAGCCGGATA--TAATACC
*
35023349 AGCACTAGGCCTGC-GGACTATAAGTCCGGATATAATACC
1 AGCACTAAGCCTGCGGGA-TATAAG-CCGGATATAATACC
* *
35023388 AGCATTAAGCCTGCGGGATTTAAGCCGGATATAATA
1 AGCACTAAGCCTGCGGGATATAAGCCGGATATAATA
35023424 TCATATAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
38 12 0.19
39 26 0.41
40 19 0.30
41 7 0.11
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (38 bp):
AGCACTAAGCCTGCGGGATATAAGCCGGATATAATACC
Found at i:35029757 original size:47 final size:48
Alignment explanation
Indices: 35029700--35029877 Score: 215
Period size: 47 Copynumber: 3.8 Consensus size: 48
35029690 ATATTATGAG
* * *
35029700 AGCCAGTGTAA-ACCAAGTTTGGGACATGGCATCGGCATTGAGACGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGTA
* * *
35029747 AGCCAATGTAAGA-CATGCCTGGGACAT-GCATCGG-TTATGAGATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGATGTA
* * *
35029792 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATGTG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGTA
35029840 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
35029878 CTTTACCCAC
Statistics
Matches: 110, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.02
46 24 0.22
47 76 0.69
48 8 0.07
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGTA
Found at i:35029834 original size:93 final size:94
Alignment explanation
Indices: 35029660--35029875 Score: 260
Period size: 93 Copynumber: 2.3 Consensus size: 94
35029650 TTTTGGCTAG
* * *
35029660 TGTAAGGCATGTCTGGGACATGCATC-GTCCATATTATGAGAGCCAGTGTAAACCAAGTTTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGTCCATATGATGAGAGCCAGTGTAAACCAAGTCTGGGA
*
35029724 CATGGCATCGGCATTGAGACGTAAGCCAA
66 CATGGCATCGACATTGAGACGTAAGCCAA
* * * * *
35029753 TGTAAGACATGCCTGGGACATGCATCGGT-TATGA-GATGATAGTCAGTGTAAGACCATGTCTGG
1 TGTAAGACATGTCTGGGACATGCATCGGTCCAT-ATGATGAGAGCCAGTGTAA-ACCAAGTCTGG
* * *
35029816 GACATGGCATCGAC-TTGAGATGTGAGCCAG
64 GACATGGCATCGACATTGAGACGTAAGCCAA
35029846 TGTAAGACCATGTCTGGGACATGGCATCGG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGG
35029876 CACTTTACCC
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
93 60 0.57
94 38 0.36
95 7 0.07
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
TGTAAGACATGTCTGGGACATGCATCGGTCCATATGATGAGAGCCAGTGTAAACCAAGTCTGGGA
CATGGCATCGACATTGAGACGTAAGCCAA
Found at i:35036929 original size:93 final size:93
Alignment explanation
Indices: 35036770--35036941 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
35036760 GCCCATAAGT
* *
35036770 GAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
35036835 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGAATGCCTAGTTACATCTCTC
* * *
35036863 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
35036928 CGAGTTCGAATGCC
66 CGAGCTCGAATGCC
35036942 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTAAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCTC
Found at i:35036935 original size:46 final size:46
Alignment explanation
Indices: 35036762--35036931 Score: 207
Period size: 46 Copynumber: 3.7 Consensus size: 46
35036752 TGTAACCCGC
* * *
35036762 CCATAAGTGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
35036808 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** *
35036854 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
35036901 CCATAAGTGAACTTGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
35036932 TTCGAATGCC
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 66 0.65
47 36 0.35
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:35040886 original size:28 final size:28
Alignment explanation
Indices: 35040846--35040924 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
35040836 GCAATCAAAT
* * *
35040846 ATGGTACTCAGTGTATGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
35040874 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
35040902 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
35040925 CAAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:35044076 original size:4 final size:4
Alignment explanation
Indices: 35044061--35044091 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
35044051 AAGTTAACTA
*
35044061 AAAT AGAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
35044092 GTTCAAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:35044443 original size:89 final size:89
Alignment explanation
Indices: 35044343--35044516 Score: 321
Period size: 89 Copynumber: 2.0 Consensus size: 89
35044333 AATTAACAAA
*
35044343 AATTTCAAATACGGACTCTGTTTTTATTCCGATCTCAATAATACACTTTATTAATTCCATAAAAT
1 AATTTCAAATACGGACTCCGTTTTTATTCCGATCTCAATAATACACTTTATTAATTCCATAAAAT
*
35044408 GCATAATTTTAAAAATTTCACGTG
66 GCATAATTTTAAAAAATTCACGTG
*
35044432 AATTTCAAATACGGACTCCGTTTTTATTCCGATCTCAATAATACATTTTATTAATTCCATAAAAT
1 AATTTCAAATACGGACTCCGTTTTTATTCCGATCTCAATAATACACTTTATTAATTCCATAAAAT
35044497 GCATAATTTTAAAAAATTCA
66 GCATAATTTTAAAAAATTCA
35044517 TTTGAAATTT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 82 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (89 bp):
AATTTCAAATACGGACTCCGTTTTTATTCCGATCTCAATAATACACTTTATTAATTCCATAAAAT
GCATAATTTTAAAAAATTCACGTG
Found at i:35045328 original size:35 final size:35
Alignment explanation
Indices: 35045285--35045355 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
35045275 TTAAAGTACA
35045285 AAGATTAAACCCACAACCTTCATAAAAGTACAAGG
1 AAGATTAAACCCACAACCTTCATAAAAGTACAAGG
35045320 AAGATTAAACCCACAACCTTCATAAAAGTACAAGG
1 AAGATTAAACCCACAACCTTCATAAAAGTACAAGG
35045355 A
1 A
35045356 CTAATAGCAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.49, C:0.23, G:0.11, T:0.17
Consensus pattern (35 bp):
AAGATTAAACCCACAACCTTCATAAAAGTACAAGG
Found at i:35046680 original size:2 final size:2
Alignment explanation
Indices: 35046673--35046704 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
35046663 GACAAAACAG
35046673 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
35046705 CCCTAGTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:35046979 original size:22 final size:22
Alignment explanation
Indices: 35046931--35046980 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
35046921 GGTCAAACGC
* * * *
35046931 CCGTATAAAGAGGGGTACACGG
1 CCGTGTAAAGAGAGGCACACAG
35046953 CCGTGTAAAGAGAGGCACACAG
1 CCGTGTAAAGAGAGGCACACAG
35046975 CCGTGT
1 CCGTGT
35046981 GATTGAGGCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.22, G:0.34, T:0.14
Consensus pattern (22 bp):
CCGTGTAAAGAGAGGCACACAG
Found at i:35049604 original size:21 final size:20
Alignment explanation
Indices: 35049580--35049631 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
35049570 TTATGCCACA
35049580 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
35049601 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
*
35049621 TTAGTATTTTA
1 TCAGTATTTTA
35049632 ATTTGGATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.25, C:0.13, G:0.12, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:35051793 original size:18 final size:17
Alignment explanation
Indices: 35051772--35051820 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
35051762 AAAAAACTAC
35051772 TTTTTAAAATGTAATTGA
1 TTTTTAAAATGT-ATTGA
*
35051790 TTTTTAAAATGTTTTGA
1 TTTTTAAAATGTATTGA
*
35051807 TTTTTTAAAT-TATT
1 TTTTTAAAATGTATT
35051821 AAAAATACGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 3 0.11
17 13 0.46
18 12 0.43
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (17 bp):
TTTTTAAAATGTATTGA
Found at i:35052192 original size:6 final size:6
Alignment explanation
Indices: 35052182--35052211 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
35052172 ATAGTTATCT
*
35052182 ATATAT ATATAG ATATAG ATATAG ATATAG
1 ATATAG ATATAG ATATAG ATATAG ATATAG
35052212 CTAATATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (6 bp):
ATATAG
Found at i:35052446 original size:45 final size:45
Alignment explanation
Indices: 35052397--35052494 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
35052387 TAGATTACTA
* * *
35052397 AATATTATCC-AATATTTAAAATGAACTAATCATACAAATACTAAT
1 AATATTATCCAAAT-TTTAAAATAAACTAATAATACAAATACTAAC
** *
35052442 AATATTATTTAAATTTTAAAATAAATTAATAATACAAATACTAAC
1 AATATTATCCAAATTTTAAAATAAACTAATAATACAAATACTAAC
35052487 AATATTAT
1 AATATTAT
35052495 TTAAAGTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 43 0.93
46 3 0.07
ACGTcount: A:0.53, C:0.09, G:0.01, T:0.37
Consensus pattern (45 bp):
AATATTATCCAAATTTTAAAATAAACTAATAATACAAATACTAAC
Found at i:35052495 original size:45 final size:45
Alignment explanation
Indices: 35052411--35052499 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
35052401 TTATCCAATA
* * *
35052411 TTTAAAATGAACTAATCATACAAATACTAATAATATTATTTAAAT
1 TTTAAAATAAACTAATAATACAAATACTAACAATATTATTTAAAT
*
35052456 TTTAAAATAAATTAATAATACAAATACTAACAATATTATTTAAA
1 TTTAAAATAAACTAATAATACAAATACTAACAATATTATTTAAA
35052500 GTAAACCATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.54, C:0.08, G:0.01, T:0.37
Consensus pattern (45 bp):
TTTAAAATAAACTAATAATACAAATACTAACAATATTATTTAAAT
Found at i:35058833 original size:20 final size:20
Alignment explanation
Indices: 35058784--35058840 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
35058774 AGTTTATGTT
* * *
35058784 AAGTAAATGAAATGGAAAGT
1 AAGTAAATGGAATGGTAAGA
35058804 AAGTAAATGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
35058824 AAGTAAATGGAGTGGTA
1 AAGTAAATGGAATGGTA
35058841 CACAGTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.30, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:35060780 original size:31 final size:31
Alignment explanation
Indices: 35060745--35060814 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
35060735 TAAAGTATCC
* *
35060745 AACACCGGTACATAGTACCTGATAAGAAATA
1 AACACCAGCACATAGTACCTGATAAGAAATA
* * * *
35060776 AACACTAGCACATAGTGCCTGATATGATATA
1 AACACCAGCACATAGTACCTGATAAGAAATA
35060807 AACACCAG
1 AACACCAG
35060815 TATAAAATAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (31 bp):
AACACCAGCACATAGTACCTGATAAGAAATA
Found at i:35068010 original size:45 final size:44
Alignment explanation
Indices: 35067960--35068071 Score: 129
Period size: 44 Copynumber: 2.5 Consensus size: 44
35067950 ACTTGTTAAG
*
35067960 TTGGT-CAAGGTTCATGATATGTATGAG-GCATCCGAGCTCGTTGAA
1 TTGGTCCAA-GTTCAT--TATGGATGAGAGCATCCGAGCTCGTTGAA
* *
35068005 TTGGTCCAAGTTCATTATGGATGCGAGCATCCGAGCTCGTTGAG
1 TTGGTCCAAGTTCATTATGGATGAGAGCATCCGAGCTCGTTGAA
***
35068049 TTGGTTTGAGTTCATTATGGATG
1 TTGGTCCAAGTTCATTATGGATG
35068072 CGATACATGT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 8 0.14
44 37 0.63
45 11 0.19
46 3 0.05
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.34
Consensus pattern (44 bp):
TTGGTCCAAGTTCATTATGGATGAGAGCATCCGAGCTCGTTGAA
Found at i:35068042 original size:44 final size:44
Alignment explanation
Indices: 35067987--35068074 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
35067977 TATGTATGAG
35067987 GCATCCGAGCTCGTTGAATTGGTCCAAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAATTGGTCCAAGTTCATTATGGATGCGA
* ***
35068031 GCATCCGAGCTCGTTGAGTTGGTTTGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAATTGGTCCAAGTTCATTATGGATGCGA
35068075 TACATGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAATTGGTCCAAGTTCATTATGGATGCGA
Found at i:35071535 original size:12 final size:12
Alignment explanation
Indices: 35071518--35071543 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35071508 CACACGCCCA
35071518 TGTGCTAGGCCG
1 TGTGCTAGGCCG
35071530 TGTGCTAGGCCG
1 TGTGCTAGGCCG
35071542 TG
1 TG
35071544 CCAAACCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.23, G:0.42, T:0.27
Consensus pattern (12 bp):
TGTGCTAGGCCG
Found at i:35072468 original size:18 final size:18
Alignment explanation
Indices: 35072441--35072482 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
35072431 CATAACTTTC
*
35072441 ATAG-TTTCAGTGCTCAT
1 ATAGTTTTCAGTGCACAT
35072458 ATAGTTTTCAGTGCACAT
1 ATAGTTTTCAGTGCACAT
35072476 ATAGTTT
1 ATAGTTT
35072483 CCATACATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (18 bp):
ATAGTTTTCAGTGCACAT
Found at i:35077678 original size:43 final size:44
Alignment explanation
Indices: 35077589--35077740 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 44
35077579 GTCGAGATGA
* * *
35077589 GATTACATGTAAGACCAGGTCTGGTG-CATTGGCAT-TGTATTGT
1 GATTACATGTAAGACCATGTCTGG-GACATTAGCATCTGTATTAT
*
35077632 GATTACACGTAAGACCATGTCTGGGACATTAGCATCAT-TA-TAT
1 GATTACATGTAAGACCATGTCTGGGACATTAGCATC-TGTATTAT
* * *
35077675 GATTTCATGTAAGACCATGCCTGAGACATTAGCATC-G-A-TAT
1 GATTACATGTAAGACCATGTCTGGGACATTAGCATCTGTATTAT
* * *
35077716 GA-GACATGTAATACCATATCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
35077741 TATGACATTG
Statistics
Matches: 91, Mismatches: 14, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
40 17 0.19
41 6 0.07
42 1 0.01
43 64 0.70
44 2 0.02
45 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (44 bp):
GATTACATGTAAGACCATGTCTGGGACATTAGCATCTGTATTAT
Found at i:35080898 original size:79 final size:81
Alignment explanation
Indices: 35080789--35080971 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
35080779 TACTCGTTCA
* *
35080789 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
35080852 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
35080869 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
35080932 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
35080948 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
35080972 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:35080971 original size:40 final size:40
Alignment explanation
Indices: 35080768--35080971 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
35080758 CGGAATTTAA
** *
35080768 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35080808 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35080848 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
35080887 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
35080927 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
35080967 CCGGA
1 CCGGA
35080972 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:35088306 original size:40 final size:40
Alignment explanation
Indices: 35088111--35088312 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
35088101 CAGAATTTAA
** *
35088111 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35088151 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35088191 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAG-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
35088229 CCGGA-ATTAGTAACTCGCACAAATGCCTTC--GATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
35088268 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
35088308 CCGGA
1 CCGGA
35088313 CATCATTCGA
Statistics
Matches: 138, Mismatches: 15, Indels: 18
0.81 0.09 0.11
Matches are distributed among these distances:
36 1 0.01
38 32 0.23
39 21 0.15
40 82 0.59
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:35088306 original size:78 final size:78
Alignment explanation
Indices: 35088130--35088308 Score: 195
Period size: 78 Copynumber: 2.3 Consensus size: 78
35088120 GCTACTCGTT
* *
35088130 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGG
* *
35088195 ATTTAGTAACTCGCAC
63 ATATAGTAACTAGCAC
* **
35088211 CAATGCCTTCGGG-CTTAGCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GATCTTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCGGATA-TAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGA
* *
35088273 TATGGTCACTTAGCA-
64 TATAGTAAC-TAGCAC
35088288 CAAAGCCTTCGGGACTTAGCC
1 CAAAGCCTTCGGGACTTAGCC
35088309 CGGACATCAT
Statistics
Matches: 84, Mismatches: 10, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
76 2 0.02
77 28 0.33
78 38 0.45
79 4 0.05
80 9 0.11
81 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAAGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATA
TAGTAACTAGCAC
Found at i:35092747 original size:10 final size:10
Alignment explanation
Indices: 35092732--35092762 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
35092722 ATTTCATATA
35092732 AACATCATTC
1 AACATCATTC
35092742 AACATCATTC
1 AACATCATTC
35092752 AACATCATTC
1 AACATCATTC
35092762 A
1 A
35092763 CATTGTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (10 bp):
AACATCATTC
Found at i:35105881 original size:50 final size:50
Alignment explanation
Indices: 35105822--35105921 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
35105812 CCATTATGGG
35105822 TTAACCTACAACAAGGAAACAAACATATATGTACAACCCAATCAACCATT
1 TTAACCTACAACAAGGAAACAAACATATATGTACAACCCAATCAACCATT
35105872 TTAACCTACAACAAGGAAACAAACATATATGTACAACCCAATCAACCATT
1 TTAACCTACAACAAGGAAACAAACATATATGTACAACCCAATCAACCATT
35105922 CTTTATTCTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.48, C:0.26, G:0.06, T:0.20
Consensus pattern (50 bp):
TTAACCTACAACAAGGAAACAAACATATATGTACAACCCAATCAACCATT
Found at i:35105906 original size:25 final size:25
Alignment explanation
Indices: 35105828--35105908 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
35105818 TGGGTTAACC
35105828 TACAACAAGGAAACAAACATATATG
1 TACAACAAGGAAACAAACATATATG
** * * * **
35105853 TACAAC--CCAATCAACCATTTTAACC
1 TACAACAAGGAAACAAACA-TAT-ATG
35105878 TACAACAAGGAAACAAACATATATG
1 TACAACAAGGAAACAAACATATATG
35105903 TACAAC
1 TACAAC
35105909 CCAATCAACC
Statistics
Matches: 38, Mismatches: 14, Indels: 8
0.63 0.23 0.13
Matches are distributed among these distances:
23 7 0.18
24 2 0.05
25 20 0.53
26 2 0.05
27 7 0.18
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (25 bp):
TACAACAAGGAAACAAACATATATG
Found at i:35112484 original size:6 final size:6
Alignment explanation
Indices: 35112454--35112522 Score: 70
Period size: 6 Copynumber: 11.3 Consensus size: 6
35112444 AAGAAACATT
* * *
35112454 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
35112503 ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
35112523 TAGGTGACAT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
5 2 0.04
6 45 0.87
7 4 0.08
8 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:35112512 original size:31 final size:31
Alignment explanation
Indices: 35112477--35112578 Score: 150
Period size: 31 Copynumber: 3.3 Consensus size: 31
35112467 TCAAAATGAG
*
35112477 AATCAGAATCAGAATCAGGTGACAGAATCAG
1 AATCAGAATCAGAATCAGGTGACAGAATCAA
* * *
35112508 AATCAGAATCAGAATTAGGTGACATAATTAA
1 AATCAGAATCAGAATCAGGTGACAGAATCAA
* *
35112539 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGGTGACAGAATCAA
35112570 AATCAGAAT
1 AATCAGAAT
35112579 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTGACAGAATCAA
Found at i:35113114 original size:27 final size:27
Alignment explanation
Indices: 35113084--35113382 Score: 327
Period size: 27 Copynumber: 11.1 Consensus size: 27
35113074 AACACCCTAG
* *
35113084 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
35113111 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
**
35113138 GGGTAAAATAGTAATTCTATAAATTAA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
35113165 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* * * *
35113192 GGATAAGATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* * * *
35113219 GGGTAAAA-CGATAATTTTGTAAATTGA
1 GGGTAAAATAG-TAATTCTATAAATCGA
* * *
35113246 GGGTAAAATGGTAATTCTGTAAATCAA
1 GGGTAAAATAGTAATTCTATAAATCGA
*
35113273 GGGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
35113300 GGGTAAAAT-GATAATTTTTTAAATCGA
1 GGGTAAAATAG-TAATTCTATAAATCGA
*
35113327 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
*
35113354 GGGTAAAAT-GATAATTCTGTAAATC-A
1 GGGTAAAATAG-TAATTCTATAAATCGA
35113380 GGG
1 GGG
35113383 GTAGTTTGGT
Statistics
Matches: 231, Mismatches: 36, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.03
27 224 0.97
28 1 0.00
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTATAAATCGA
Found at i:35113145 original size:54 final size:54
Alignment explanation
Indices: 35113084--35113382 Score: 366
Period size: 54 Copynumber: 5.6 Consensus size: 54
35113074 AACACCCTAG
* *
35113084 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGA
* * ** * *
35113138 GGGTAAAATAGTAATTCTATAAATTAAGGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGA
* * * * * * * *
35113192 GGATAAGATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGA
* * * *
35113246 GGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGA
* * * *
35113300 GGGTAAAATGATAATTTTTTAAATCGAGGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGA
*
35113354 GGGTAAAATGATAATTCTGTAAATC-AGGG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGG
35113383 GTAGTTTGGT
Statistics
Matches: 211, Mismatches: 34, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
53 4 0.02
54 207 0.98
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (54 bp):
GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGA
Found at i:35113385 original size:81 final size:81
Alignment explanation
Indices: 35113084--35113382 Score: 361
Period size: 81 Copynumber: 3.7 Consensus size: 81
35113074 AACACCCTAG
* * * *
35113084 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAAT-A
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGA
* *
35113148 GTAATTCTATAAATTAA
66 -TAATTTTATAAATTGA
* * * * * * *
35113165 GGGTAAAACAGTAATTCTGTAAATCGAGGATAAGATAGTAATTTTGTAAATCGAGGGTAAAACGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGA
*
35113230 TAATTTTGTAAATTGA
66 TAATTTTATAAATTGA
* * * *
35113246 GGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAATGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGA
* *
35113311 TAATTTTTTAAATCGA
66 TAATTTTATAAATTGA
* *
35113327 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAAT-GATAATTCTGTAAATC-AGGG
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAG-TAATTCTATAAATCGAGGG
35113383 GTAGTTTGGT
Statistics
Matches: 185, Mismatches: 31, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
80 5 0.03
81 179 0.97
82 1 0.01
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (81 bp):
GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGA
TAATTTTATAAATTGA
Found at i:35113395 original size:27 final size:26
Alignment explanation
Indices: 35113375--35113531 Score: 167
Period size: 27 Copynumber: 5.8 Consensus size: 26
35113365 TAATTCTGTA
*
35113375 AATCAGGGGTAGTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTTAC
*
35113401 AAGTC-GAGGGTATTTTAGTAATTTTAC
1 AA-TCAG-GGGTATTTTGGTAATTTTAC
*
35113428 AAATCAGAGGTATTTTGGTAATTTTAC
1 -AATCAGGGGTATTTTGGTAATTTTAC
*
35113455 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTTGGTAATTTTAC
*
35113482 AAACTAGGGGTATTTTGGGT-ATTTTAC
1 AATC-AGGGGTATTTT-GGTAATTTTAC
*
35113509 AGGTC-GAGGGTATTTTGGTAATT
1 A-ATCAG-GGGTATTTTGGTAATT
35113532 CTACCCTACA
Statistics
Matches: 114, Mismatches: 8, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.09
27 97 0.85
28 7 0.06
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTTAC
Found at i:35113450 original size:81 final size:82
Alignment explanation
Indices: 35113379--35113533 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 82
35113369 TCTGTAAATC
*
35113379 AGGGGTAGTTTGGTAATTTTACAAGTCGA-GGGTATTTT-AGTAATTTTACAAATC-AGAGGTAT
1 AGGGGTAGTTTGGTAATTTTACAA-ACGAGGGGTATTTTGAGT-ATTTTACAAATCGAG-GGTAT
35113441 TTTGGTAATT-TTACAAACT
63 TTTGGTAATTCTTACAAACT
* * * **
35113460 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGGTATTTTACAGGTCGAGGGTATTTT
1 AGGGGTAGTTTGGTAATTTTACAAACGAGGGGTATTTTGAGTATTTTACAAATCGAGGGTATTTT
35113525 GGTAATTCT
66 GGTAATTCT
35113534 ACCCTACAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
80 2 0.03
81 57 0.89
82 5 0.08
ACGTcount: A:0.27, C:0.07, G:0.25, T:0.41
Consensus pattern (82 bp):
AGGGGTAGTTTGGTAATTTTACAAACGAGGGGTATTTTGAGTATTTTACAAATCGAGGGTATTTT
GGTAATTCTTACAAACT
Found at i:35113545 original size:54 final size:52
Alignment explanation
Indices: 35113378--35113531 Score: 193
Period size: 54 Copynumber: 2.9 Consensus size: 52
35113368 TTCTGTAAAT
* *
35113378 CAGGGGTAGTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTAC-AGTCGAGGGTATTTTGGTAATTTTACAAA
* ** *
35113431 TCAGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAGTCGA-GGGTATTTTGGTAATTTTACAAA
35113485 CTAGGGGTATTTTGGGT-ATTTTACAGGTCGAGGGTATTTTGGTAATT
1 C-AGGGGTATTTT-GGTAATTTTACA-GTCGAGGGTATTTTGGTAATT
35113532 CTACCCTACA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 4 0.05
54 77 0.90
55 5 0.06
ACGTcount: A:0.27, C:0.07, G:0.25, T:0.40
Consensus pattern (52 bp):
CAGGGGTATTTTGGTAATTTTACAGTCGAGGGTATTTTGGTAATTTTACAAA
Found at i:35113550 original size:27 final size:27
Alignment explanation
Indices: 35113526--35113596 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
35113516 GGGTATTTTG
35113526 GTAATTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* * * *
35113553 GTACTTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
35113580 GTAATGCTAGCCTACAG
1 GTAATTCTACCCTACAG
35113597 ATATGAGATT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTCA
Found at i:35117118 original size:47 final size:47
Alignment explanation
Indices: 35116998--35117119 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
35116988 GCATTGGTAC
*
35116998 TAAGACAAGGATACCATGTAAGACAATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
35117045 TAAGACAAGTATACCACGTAAAACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
35117092 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
35117120 CCAAGGCATG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:35117227 original size:55 final size:54
Alignment explanation
Indices: 35117098--35117294 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
35117088 TTGGTAAGAT
* * * *
35117098 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
35117152 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * *
35117208 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
35117260 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
35117295 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 42 0.34
55 41 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:35119553 original size:25 final size:25
Alignment explanation
Indices: 35119523--35119601 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
35119513 CTTCCCAATT
** *
35119523 ATGGCTCTTATGAGCTTCTCGTTAC
1 ATGGCTCACATGAGCTTCCCGTTAC
* *
35119548 ATGGCTCACATGGGCTTCCCGTTAT
1 ATGGCTCACATGAGCTTCCCGTTAC
* *
35119573 ATGGCTCGA-AAGAGCTTCCCAATTAC
1 ATGGCTC-ACATGAGCTTCCC-GTTAC
35119599 ATG
1 ATG
35119602 TTCGCATGGG
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
25 36 0.84
26 7 0.16
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (25 bp):
ATGGCTCACATGAGCTTCCCGTTAC
Found at i:35130578 original size:30 final size:30
Alignment explanation
Indices: 35130542--35130610 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
35130532 CACATAGTTA
*
35130542 GACACACGGGCATGTGTCTTGGCCGTTTGT
1 GACACACGGGCATGTGTCTTGGCCGTCTGT
35130572 GACACACGGGCATGTGTCTTGGCCGTCTGT
1 GACACACGGGCATGTGTCTTGGCCGTCTGT
35130602 GACACACGG
1 GACACACGG
35130611 TCTGCCCCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (30 bp):
GACACACGGGCATGTGTCTTGGCCGTCTGT
Found at i:35132585 original size:18 final size:18
Alignment explanation
Indices: 35132564--35132623 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
35132554 AATCGGTTAA
* *
35132564 TCAGTAATATTCATTTAT
1 TCAGTAACAATCATTTAT
*
35132582 TCAGTACCAATCATTTAT
1 TCAGTAACAATCATTTAT
* * *
35132600 TCTGTAACAGTCAATTAT
1 TCAGTAACAATCATTTAT
35132618 TCAGTA
1 TCAGTA
35132624 GCAGATAGTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (18 bp):
TCAGTAACAATCATTTAT
Found at i:35132764 original size:6 final size:6
Alignment explanation
Indices: 35132755--35132781 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
35132745 CACCGTAAGG
35132755 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
35132782 GCGGTACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:35133801 original size:19 final size:17
Alignment explanation
Indices: 35133766--35133806 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 17
35133756 AACCCTAATT
35133766 TTTCCTTTTTCTTTTTC
1 TTTCCTTTTTCTTTTTC
35133783 TTTCCTCTTTTCTTATTTC
1 TTTCCT-TTTTCTT-TTTC
35133802 TTTCC
1 TTTCC
35133807 CCTACTACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.27
18 7 0.32
19 9 0.41
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTCCTTTTTCTTTTTC
Found at i:35136400 original size:25 final size:24
Alignment explanation
Indices: 35136372--35136536 Score: 63
Period size: 25 Copynumber: 6.7 Consensus size: 24
35136362 TCGTTATTTA
35136372 GCTCTTATGAGCATTCCGATATATG
1 GCTCTTATGAGC-TTCCGATATATG
*
35136397 GCTCTCT-TGAGCTTTCC-ATTATTTG
1 GCTCT-TATGAGC-TTCCGA-TATATG
* * *
35136422 GCTCTCACGAGCTTCCCGATA-ATTT
1 GCTCTTATGAGCTT-CCGATATA-TG
* * *
35136447 GCTCTCATGAGCATCCCA-ACTAATG
1 GCTCTTATGAGCTTCCGATA-T-ATG
* *
35136472 CCTCTCTA-GAGCTTCCCA-ATTATG
1 GCTCT-TATGAGCTTCCGATA-TATG
* * *
35136496 GCTCTTATGAGCTACCCATTACATG
1 GCTCTTATGAGCTTCCGA-TATATG
**
35136521 GCTCACATGAGCTTCC
1 GCTCTTATGAGCTTCC
35136537 CGTTATACGG
Statistics
Matches: 107, Mismatches: 20, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
23 3 0.03
24 22 0.21
25 77 0.72
26 5 0.05
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.33
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCGATATATG
Found at i:35136470 original size:26 final size:26
Alignment explanation
Indices: 35136417--35136470 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
35136407 GCTTTCCATT
* *
35136417 ATTTGGCTCTCACGAGCTTCCCGATA
1 ATTTGGCTCTCACGAGCATCCCAATA
*
35136443 ATTT-GCTCTCATGAGCATCCCAACTA
1 ATTTGGCTCTCACGAGCATCCCAA-TA
35136469 AT
1 AT
35136471 GCCTCTCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (26 bp):
ATTTGGCTCTCACGAGCATCCCAATA
Found at i:35136548 original size:25 final size:25
Alignment explanation
Indices: 35136502--35136569 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
35136492 TATGGCTCTT
* * *
35136502 ATGAGCTACCCATTACATGGCTC-A
1 ATGAGCTTCCCGTTACACGGCTCGA
*
35136526 CATGAGCTTCCCGTTATACGGCTCGA
1 -ATGAGCTTCCCGTTACACGGCTCGA
*
35136552 AAGAGCTTCCCGATTACA
1 ATGAGCTTCCCG-TTACA
35136570 TGCTCGCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
25 30 0.86
26 5 0.14
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
ATGAGCTTCCCGTTACACGGCTCGA
Found at i:35149944 original size:46 final size:46
Alignment explanation
Indices: 35149894--35150066 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
35149884 TGGTTGAGCA
* *
35149894 TCCGAAATCGTTTAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * **
35149940 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT--G
* * *
35149985 CATCCGATCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
35150033 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
35150067 GGGACGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 7 0.07
45 3 0.03
46 56 0.55
47 27 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.