Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 106 of 343
Found at i:35529457 original size:19 final size:20
Alignment explanation
Indices: 35529422--35529463 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
35529412 ATTTAAGCAT
35529422 TCAATTCACATAAAATT-AA
1 TCAATTCACATAAAATTCAA
*
35529441 TCAATTCATA-AACAATTCAA
1 TCAATTCACATAA-AATTCAA
35529461 TCA
1 TCA
35529464 CAATTAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (20 bp):
TCAATTCACATAAAATTCAA
Found at i:35530595 original size:16 final size:17
Alignment explanation
Indices: 35530548--35530595 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
35530538 GATCTAGCTT
*
35530548 AAGAATAATATAAAACAC
1 AAGAAAAATAT-AAACAC
35530566 AAGAAAAATATAAACA-
1 AAGAAAAATATAAACAC
* *
35530582 AAGTAAACTATAAA
1 AAGAAAAATATAAA
35530596 GCTTAGTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 12 0.44
17 5 0.19
18 10 0.37
ACGTcount: A:0.69, C:0.08, G:0.06, T:0.17
Consensus pattern (17 bp):
AAGAAAAATATAAACAC
Found at i:35535568 original size:40 final size:40
Alignment explanation
Indices: 35535463--35535664 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
35535453 CGGATGATAA
* *
35535463 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
35535503 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35535542 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
35535582 CCGGGCTAAGTACCGATGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
35535622 CCGAGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
35535662 CCG
1 CCG
35535665 ACTAAATTCT
Statistics
Matches: 148, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
39 37 0.25
40 111 0.75
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35542448 original size:15 final size:13
Alignment explanation
Indices: 35542421--35542445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35542411 TATGTGCGAC
35542421 ACACGGTCATGTT
1 ACACGGTCATGTT
35542434 ACACGGTCATGT
1 ACACGGTCATGT
35542446 GTTCGCTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (13 bp):
ACACGGTCATGTT
Found at i:35544922 original size:18 final size:19
Alignment explanation
Indices: 35544895--35544930 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
35544885 TAATATAAGG
*
35544895 TCATTGATTTC-ACTTAAA
1 TCATTCATTTCAACTTAAA
35544913 TCATTCATTTCAACTTAA
1 TCATTCATTTCAACTTAA
35544931 GCATACAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.44
Consensus pattern (19 bp):
TCATTCATTTCAACTTAAA
Found at i:35545768 original size:40 final size:42
Alignment explanation
Indices: 35545691--35545771 Score: 114
Period size: 40 Copynumber: 2.0 Consensus size: 42
35545681 CTACAGGGGT
* *
35545691 TTTCACACGGCCTGGCACACGCTCGTGTACCTAGCCCGTGTC
1 TTTCACACGACCTGACACACGCTCGTGTACCTAGCCCGTGTC
35545733 TTTCACACGACCATGACACAC-C-CGTGT-CCTAGCCCGTGT
1 TTTCACACGACC-TGACACACGCTCGTGTACCTAGCCCGTGT
35545772 GCAAAAACAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 12 0.33
41 5 0.14
42 12 0.33
43 7 0.19
ACGTcount: A:0.17, C:0.38, G:0.21, T:0.23
Consensus pattern (42 bp):
TTTCACACGACCTGACACACGCTCGTGTACCTAGCCCGTGTC
Found at i:35546864 original size:46 final size:47
Alignment explanation
Indices: 35546777--35546947 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 47
35546767 TATATTTGTT
35546777 CCGATGCCATGTCCCAGACATGGTCTTACACTGACA--CATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-ACACTCATCTCGAGG
* * **
35546823 CCGATG-CATGTCCCAGACAT-GTATTACACTATCACTCATCTCAATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTA-CACTCATCTCGAGG
* * * *
35546869 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-ACACTCAT-CTCGAGG
* *
35546917 CCGATG-CATGTTCTAGACAT-GTCTTACACTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTA
35546948 GCTCACACAA
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 11 0.11
45 14 0.14
46 29 0.28
47 26 0.25
48 21 0.20
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTACACTCATCTCGAGG
Found at i:35548267 original size:40 final size:40
Alignment explanation
Indices: 35548212--35548354 Score: 153
Period size: 40 Copynumber: 3.6 Consensus size: 40
35548202 CATTCTTTTT
* *
35548212 AGTAGATTCAGTAGGTATGGCTTGAAAGCGCTTACATTTC
1 AGTAGATTCAGTAGGTATGGCTCGAAAGCGCTTACGTTTC
* * * *
35548252 AGTAGATTTAGTAGGTGTGGCTCAAAAGCG-TATAGGTTTC
1 AGTAGATTCAGTAGGTATGGCTCGAAAGCGCT-TACGTTTC
* * * **
35548292 AGTAGATTCAGTAAGTATGGCTCGAAAGCACATACGCGTC
1 AGTAGATTCAGTAGGTATGGCTCGAAAGCGCTTACGTTTC
* *
35548332 AATAGATTTAGTAGGTATGGCTC
1 AGTAGATTCAGTAGGTATGGCTC
35548355 TTCTGAGCAC
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 82 0.99
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (40 bp):
AGTAGATTCAGTAGGTATGGCTCGAAAGCGCTTACGTTTC
Found at i:35555185 original size:46 final size:46
Alignment explanation
Indices: 35555127--35555302 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
35555117 TGTAACCCGC
* * *
35555127 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
35555173 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* *
35555223 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
35555266 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
35555303 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 61 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:35555247 original size:93 final size:93
Alignment explanation
Indices: 35555134--35555305 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
35555124 CGCCCATAAG
* *
35555134 CGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
35555199 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* *
35555227 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
35555292 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
35555306 TCAATCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:35559389 original size:26 final size:27
Alignment explanation
Indices: 35559353--35559406 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
35559343 CTATGGAGCA
35559353 ATCGAAATCGGAGCT-TTCCCGGTATC
1 ATCGAAATCGGAGCTGTTCCCGGTATC
35559379 ATCGAAATCGGAGCTGTTCCCGGTATC
1 ATCGAAATCGGAGCTGTTCCCGGTATC
35559406 A
1 A
35559407 AATCAATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (27 bp):
ATCGAAATCGGAGCTGTTCCCGGTATC
Found at i:35562772 original size:46 final size:46
Alignment explanation
Indices: 35562705--35562833 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
35562695 TGTAACCCGC
* * *
35562705 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
*
35562751 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
35562797 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
35562834 TGCTCAATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:35565196 original size:25 final size:25
Alignment explanation
Indices: 35565168--35565226 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
35565158 AGCAATTAAC
*
35565168 TTTTACCTCTTTTACAA-TGTAATCA
1 TTTTACCTCTTCTACAACT-TAATCA
*
35565193 TTTTACCTCTTCTACAACTTAATTA
1 TTTTACCTCTTCTACAACTTAATCA
35565218 TTTTACCTC
1 TTTTACCTC
35565227 AGTTAAGCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 30 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.02, T:0.49
Consensus pattern (25 bp):
TTTTACCTCTTCTACAACTTAATCA
Found at i:35567607 original size:9 final size:9
Alignment explanation
Indices: 35567595--35567671 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
35567585 TTTGATAAAC
35567595 ATGATATGT
1 ATGATATGT
*
35567604 ATGATATGCAC
1 ATGATATG--T
35567615 ATGATATGT
1 ATGATATGT
*
35567624 ATGATATGCAC
1 ATGATATG--T
*
35567635 ATGACATGT
1 ATGATATGT
*
35567644 ATGATATGCAC
1 ATGATATG--T
35567655 ATGATATGT
1 ATGATATGT
35567664 ATGATATG
1 ATGATATG
35567672 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:35567620 original size:11 final size:11
Alignment explanation
Indices: 35567604--35567675 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
35567594 CATGATATGT
35567604 ATGATATGCAC
1 ATGATATGCAC
*
35567615 ATGATATG--T
1 ATGATATGCAC
35567624 ATGATATGCAC
1 ATGATATGCAC
* *
35567635 ATGACATG--T
1 ATGATATGCAC
35567644 ATGATATGCAC
1 ATGATATGCAC
*
35567655 ATGATATG--T
1 ATGATATGCAC
35567664 ATGATATGCAC
1 ATGATATGCAC
35567675 A
1 A
35567676 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:35567683 original size:20 final size:20
Alignment explanation
Indices: 35567593--35567675 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
35567583 ATTTTGATAA
35567593 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
35567613 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
35567633 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
35567653 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
35567673 ACA
1 ACA
35567676 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:35567807 original size:23 final size:24
Alignment explanation
Indices: 35567728--35567871 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
35567718 GAAGAAGTGC
35567728 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
35567752 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
35567776 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
35567800 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
35567823 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
35567848 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
35567872 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 3, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
23 29 0.26
24 52 0.47
25 21 0.19
26 9 0.08
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:35568099 original size:31 final size:31
Alignment explanation
Indices: 35568064--35568127 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
35568054 CGTTTACCGT
35568064 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* ** *
35568095 AAAGGCTTCGGCCTAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
35568126 AA
1 AA
35568128 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:35577754 original size:46 final size:45
Alignment explanation
Indices: 35577702--35577874 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
35577692 TGGTTGAGCA
35577702 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
35577748 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * *
35577793 CATCCGAACTCGCTGAGTTGAG-CCTGAGTTTACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCC-GAGTTCACTTATGGATG-GAATG
*
35577841 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
35577875 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 55 0.54
47 25 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:35577858 original size:93 final size:93
Alignment explanation
Indices: 35577699--35577869 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
35577689 GGATGGTTGA
* * *
35577699 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAGT
35577764 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
35577792 GCATCCGAACTCGCTGAGTTGAG-CCTGAGTTTACTTATGGATGTGAACGC-CTGAGCTCGTTGA
1 GCATCCGAACTCGCTGAGTTGAGTCC-GAGTTCACTTATGGATGCGAACGCTC-GAACTCGTTGA
35577855 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
35577870 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:35579194 original size:41 final size:41
Alignment explanation
Indices: 35579137--35579219 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
35579127 CAAAAGTTCT
* *
35579137 TGGGTTTTCTTTATGTTTTGTTATCATATTCTTTTGATATG
1 TGGGTTTTCTTTATGTTTTGTTATCATAATCTTTTGAGATG
35579178 TGGGTTTTCTTTATGTTTTGTTATCATAATCTTTTGAGATG
1 TGGGTTTTCTTTATGTTTTGTTATCATAATCTTTTGAGATG
35579219 T
1 T
35579220 TTTCTTTCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.16, C:0.07, G:0.18, T:0.59
Consensus pattern (41 bp):
TGGGTTTTCTTTATGTTTTGTTATCATAATCTTTTGAGATG
Found at i:35587959 original size:68 final size:66
Alignment explanation
Indices: 35587887--35588058 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
35587877 CATCATGTGT
* * * *
35587887 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
35587950 TGTAG
62 TGTAG
** * *
35587955 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
35588020 AG
65 AG
* * * *
35588022 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
35588059 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:35587992 original size:64 final size:64
Alignment explanation
Indices: 35587911--35588094 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
35587901 AGACATTATG
* * *
35587911 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
35587975 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
35588040 AA
63 AA
* * *
35588042 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
35588095 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:35592385 original size:68 final size:66
Alignment explanation
Indices: 35592313--35592483 Score: 177
Period size: 66 Copynumber: 2.6 Consensus size: 66
35592303 CATCATGTGT
* * * *
35592313 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
35592376 TGTAG
62 TGTAG
** * *
35592381 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
35592446 G
66 G
* * * *
35592447 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
35592484 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
64 24 0.27
65 18 0.20
66 34 0.38
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:35592418 original size:64 final size:64
Alignment explanation
Indices: 35592337--35592519 Score: 210
Period size: 66 Copynumber: 2.8 Consensus size: 64
35592327 AGACATTATG
* * *
35592337 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
35592401 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
35592466 A
64 A
* * *
35592467 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
35592520 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
65 21 0.21
66 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:35595380 original size:66 final size:65
Alignment explanation
Indices: 35595302--35595465 Score: 165
Period size: 66 Copynumber: 2.5 Consensus size: 65
35595292 CATCATGTGT
* * *
35595302 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCAT-GTGATACTA-TG-TGTACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATCGTGATACCAGTGAAGGACACCAT
35595364 GTAG
62 GTAG
** * *
35595368 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCAT-CGTGATACCAGTGAAGGACACCATGTA
35595433 G
65 G
* * *
35595434 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTC
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTC
35595466 ACATGGGTGG
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
62 17 0.20
63 3 0.04
64 8 0.10
65 11 0.13
66 45 0.54
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATCGTGATACCAGTGAAGGACACCATGTAG
Found at i:35595405 original size:62 final size:63
Alignment explanation
Indices: 35595326--35595505 Score: 188
Period size: 66 Copynumber: 2.8 Consensus size: 63
35595316 AGACATTATG
* * *
35595326 ATGTAGCTAGGTCGCAT-GTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
35595388 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATG-GTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
35595453 A
63 A
* * *
35595454 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCAT-GGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
35595506 TCGAACTATA
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
62 18 0.19
63 18 0.19
64 7 0.07
65 20 0.21
66 34 0.35
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:35597474 original size:29 final size:28
Alignment explanation
Indices: 35597405--35597529 Score: 135
Period size: 29 Copynumber: 4.4 Consensus size: 28
35597395 AAGTCTATAT
* *
35597405 ACATGCATATGGCCAACTAGGCCC-AATC
1 ACATTCATATGGCC-ATTAGGCCCAAATC
* * * *
35597433 TCATTCGTATGGCCTATTAGGCCAAAATT
1 ACATTCATATGGCC-ATTAGGCCCAAATC
*
35597462 ACATTCCTATGGCACATTAGGCCCAAATC
1 ACATTCATATGGC-CATTAGGCCCAAATC
*
35597491 AGATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGG-CCATTAGGCCCAAATC
35597520 ACATTCATAT
1 ACATTCATAT
35597530 TCATGCTTTC
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
28 18 0.22
29 60 0.75
30 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCATTAGGCCCAAATC
Found at i:35597746 original size:16 final size:16
Alignment explanation
Indices: 35597720--35597773 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
35597710 GTAGCCAAAC
*
35597720 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
* *
35597736 TTTTGGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
*
35597752 TTTCGGCATTTCGGCA
1 TTTCGGCTTTTCGGCA
35597768 TTTCGG
1 TTTCGG
35597774 GATTTGCCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.46
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:35597759 original size:8 final size:8
Alignment explanation
Indices: 35597728--35597778 Score: 66
Period size: 8 Copynumber: 6.4 Consensus size: 8
35597718 ACTTTCAGCT
35597728 TTTCGGCA
1 TTTCGGCA
* *
35597736 TTTTGGCT
1 TTTCGGCA
*
35597744 TTTTGGCA
1 TTTCGGCA
35597752 TTTCGGCA
1 TTTCGGCA
35597760 TTTCGGCA
1 TTTCGGCA
*
35597768 TTTCGGGA
1 TTTCGGCA
35597776 TTT
1 TTT
35597779 GCCAATCCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.10, C:0.18, G:0.25, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:35599019 original size:16 final size:16
Alignment explanation
Indices: 35598995--35599026 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35598985 AAATTTGAGA
*
35598995 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
35599011 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
35599027 GCGTTACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:35610619 original size:16 final size:16
Alignment explanation
Indices: 35610595--35610625 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35610585 ATTTCAAGGT
*
35610595 TAAATAAGTAAATTAG
1 TAAACAAGTAAATTAG
35610611 TAAACAAGTAAATTA
1 TAAACAAGTAAATTA
35610626 AAACAAAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.29
Consensus pattern (16 bp):
TAAACAAGTAAATTAG
Found at i:35620404 original size:21 final size:21
Alignment explanation
Indices: 35620378--35620419 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
35620368 TTTTCCTATT
35620378 TTAATTTAAAAGCTCATTAAC
1 TTAATTTAAAAGCTCATTAAC
35620399 TTAATTTAAAAGCTCATTAAC
1 TTAATTTAAAAGCTCATTAAC
35620420 AACTTGCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (21 bp):
TTAATTTAAAAGCTCATTAAC
Found at i:35623931 original size:30 final size:30
Alignment explanation
Indices: 35623896--35623952 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35623886 TTTACGAGCC
35623896 TAGGGGAAAAA-ATGTAATTTTGACAAAGTT
1 TAGGGGAAAAATA-GTAATTTTGACAAAGTT
* *
35623926 TAGGGGGAAAATAGTAATTTTGCCAAA
1 TAGGGGAAAAATAGTAATTTTGACAAA
35623953 ATATGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAATAGTAATTTTGACAAAGTT
Found at i:35624213 original size:21 final size:20
Alignment explanation
Indices: 35624189--35624227 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
35624179 GTGTAAATGT
35624189 AGTAACATAATTGTTATTTTA
1 AGTAACATAA-TGTTATTTTA
**
35624210 AGTAATTTAATGTTATTT
1 AGTAACATAATGTTATTT
35624228 ATATGATAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
AGTAACATAATGTTATTTTA
Found at i:35628196 original size:15 final size:13
Alignment explanation
Indices: 35628168--35628193 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35628158 CTCGGCAGGA
35628168 ACACGCCCGTGTG
1 ACACGCCCGTGTG
35628181 ACACGCCCGTGTG
1 ACACGCCCGTGTG
35628194 TGATTGCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:35633304 original size:49 final size:49
Alignment explanation
Indices: 35633228--35633323 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
35633218 AGCCCCTTTT
* * *
35633228 CATTAACAATATCAGTCTGGGCTTGAGCCCATTTCAGTAGCAGAGGCGG
1 CATTAACAATATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGCGG
*
35633277 CATTAACATTATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGC
1 CATTAACAATATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGC
35633324 AGTCTAGGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (49 bp):
CATTAACAATATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGCGG
Found at i:35634071 original size:16 final size:16
Alignment explanation
Indices: 35634050--35634092 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
35634040 ACAACCCATA
35634050 TTTTGGCTTTTC-ACCT
1 TTTTGGCTTTTCGA-CT
35634066 TTTTGGCTTTTCGACT
1 TTTTGGCTTTTCGACT
*
35634082 TTTTAGCTTTT
1 TTTTGGCTTTT
35634093 GTCATTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 24 0.96
17 1 0.04
ACGTcount: A:0.07, C:0.19, G:0.14, T:0.60
Consensus pattern (16 bp):
TTTTGGCTTTTCGACT
Found at i:35642571 original size:14 final size:14
Alignment explanation
Indices: 35642552--35642578 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35642542 ATACTTAACT
35642552 TGTTCTTAATTCTG
1 TGTTCTTAATTCTG
35642566 TGTTCTTAATTCT
1 TGTTCTTAATTCT
35642579 TATTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTCTG
Found at i:35645067 original size:77 final size:80
Alignment explanation
Indices: 35644933--35645113 Score: 212
Period size: 77 Copynumber: 2.3 Consensus size: 80
35644923 TCGAATGATG
* *
35644933 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
35644997 TGT-GAGTTACTA-A
66 TGTCGAGTTACTATA
* * * **
35645010 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
35645072 TTTGTGCGAGTTACTATA
64 TTTGT-CGAGTTACTATA
* *
35645090 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
35645114 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
76 1 0.01
77 39 0.44
78 17 0.19
79 18 0.20
80 13 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTCGAGTTACTATA
Found at i:35645079 original size:40 final size:40
Alignment explanation
Indices: 35644933--35645115 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
35644923 TCGAATGATG
* * * *
35644933 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
35644973 TCCGGACTAAGAT-CCGAAGGCATTTGT--GAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
35645011 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
35645050 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
35645091 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35645116 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
37 13 0.11
38 16 0.13
39 20 0.16
40 66 0.54
41 8 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35653173 original size:40 final size:40
Alignment explanation
Indices: 35652976--35653159 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
35652966 CGAATGATGT
* * * * *
35652976 CCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
35653016 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
35653056 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35653094 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35653135 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
35653160 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:35653181 original size:79 final size:79
Alignment explanation
Indices: 35653028--35653192 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
35653018 GGACTAAGAT
* **
35653028 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
35653093 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
35653107 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
35653170 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
35653186 CCGAAGG
1 CCGAAGG
35653193 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35661999 original size:79 final size:82
Alignment explanation
Indices: 35661881--35662065 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
35661871 GCTACTCGTT
* * * *
35661881 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTTGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCC-TTCGGATCTTAACCC
* *
35661944 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
35661961 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
35662024 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
35662041 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
35662066 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 5 0.06
79 51 0.57
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:35662065 original size:40 final size:40
Alignment explanation
Indices: 35661862--35662065 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
35661852 CGGAATTTAA
** *
35661862 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
35661902 CCGGTTATAGTAACTCGCACAATTGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
35661942 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35661981 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
35662021 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
35662061 CCGGA
1 CCGGA
35662066 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:35669817 original size:39 final size:39
Alignment explanation
Indices: 35669788--35669969 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 39
35669778 GCTACTCGTT
*
35669788 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
* *
35669827 CAATTGCCTTCGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
35669866 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
35669905 CAAATGCCTTCGGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
35669946 CAAA-GCCTTTGGGACTTAGCCCGG
1 CAAATGCC-TTCGGACTTAGCCCGG
35669970 ACATCATTCA
Statistics
Matches: 117, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
39 78 0.67
40 25 0.21
41 14 0.12
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:35674839 original size:16 final size:16
Alignment explanation
Indices: 35674818--35674849 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
35674808 GTGATGCATC
35674818 CTTAAATGGATTGGGT
1 CTTAAATGGATTGGGT
35674834 CTTAAATGGATTGGGT
1 CTTAAATGGATTGGGT
35674850 TGTGTACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.31, T:0.38
Consensus pattern (16 bp):
CTTAAATGGATTGGGT
Found at i:35676784 original size:46 final size:46
Alignment explanation
Indices: 35676731--35676900 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
35676721 TTGAGCATCT
35676731 GAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAATGTCC
* * *
35676777 GAACTCGTTGAGTTGAGTCCGAGTTCG-TGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAA-T--G--TCC
* * *
35676824 GAACCCGTTGAGTTGAGTCAGAGTT-GACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCG-CTTATGGATGCGAATGTCC
* * * *
35676870 GAGCTCATTGAGTCGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCGCTTA
35676901 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 54 0.55
47 26 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAATGTCC
Found at i:35676888 original size:93 final size:93
Alignment explanation
Indices: 35676725--35676895 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
35676715 GGATGGTTGA
* * * * *
35676725 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCAGAGTTCGCTTATGGATGCGAATGCCCGAACTCATTGAGT
*
35676790 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 CGAGTCCGAGTTCGTGAAATGTAACTAG
*
35676818 GCATCCGAACCCGTTGAGTTGAGTCAGAGTT-GACTTATGGATGCGAATGCCCGAGCTCATTGAG
1 GCATCCGAACCCGTTGAGTTGAGTCAGAGTTCG-CTTATGGATGCGAATGCCCGAACTCATTGAG
35676882 TCGAGTCCGAGTTC
65 TCGAGTCCGAGTTC
35676896 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACCCGTTGAGTTGAGTCAGAGTTCGCTTATGGATGCGAATGCCCGAACTCATTGAGT
CGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:35677963 original size:40 final size:40
Alignment explanation
Indices: 35677839--35678023 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
35677829 TATTCGAATG
* * * *
35677839 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * *
35677880 ATAACCGGACTAAGATCCGAAGGCATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-CGACT
* *
35677920 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
35677960 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
35678000 ATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
35678024 CTTGCGCAAG
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 92 0.76
41 28 0.23
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:35686747 original size:46 final size:46
Alignment explanation
Indices: 35686680--35686851 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
35686670 AACCCGCCCC
*
35686680 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
35686726 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
35686774 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
35686819 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
35686852 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 59 0.56
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:35686795 original size:93 final size:93
Alignment explanation
Indices: 35686685--35686855 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
35686675 GCCCCTAAGT
* *
35686685 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
35686750 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
35686778 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
35686843 CGAGTTCGGATGC
66 CGAGTTCGGATGC
35686856 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:35687309 original size:30 final size:30
Alignment explanation
Indices: 35687275--35687334 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
35687265 ATTTAATACG
35687275 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
35687305 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
35687335 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:35700071 original size:40 final size:40
Alignment explanation
Indices: 35700034--35700258 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
35700024 GCTACTCGTT
*
35700034 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
35700074 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
35700114 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
35700154 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
35700193 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
35700234 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
35700259 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 35 0.21
40 115 0.70
41 13 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:35700218 original size:119 final size:120
Alignment explanation
Indices: 35700034--35700258 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
35700024 GCTACTCGTT
* *
35700034 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
35700099 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* * **
35700154 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
35700216 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
35700259 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:35707966 original size:39 final size:40
Alignment explanation
Indices: 35707902--35708140 Score: 264
Period size: 40 Copynumber: 6.1 Consensus size: 40
35707892 CGGAATTTAA
** *
35707902 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
35707942 CCGGTTATAGTAACTCACAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
35707981 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
35708020 CCGGAT-TAGT-ACTCGCACAAATGCCTTC-GG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35708056 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
35708096 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
35708136 CCGGA
1 CCGGA
35708141 CATCATTCAA
Statistics
Matches: 172, Mismatches: 17, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
36 13 0.08
37 22 0.13
38 23 0.13
39 46 0.27
40 56 0.33
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:35708117 original size:116 final size:118
Alignment explanation
Indices: 35707902--35708140 Score: 276
Period size: 116 Copynumber: 2.0 Consensus size: 118
35707892 CGGAATTTAA
** *
35707902 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAATGC
1 CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAATGC
* *
35707967 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
66 CTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGC
* * *
35708020 CCGGAT-TAG-TACTCGCACAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCACAAAT
1 CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACAC-AAT
** * *
35708080 GCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGC
64 GCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGC
35708136 CCGGA
1 CCGGA
35708141 CATCATTCAA
Statistics
Matches: 104, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
113 1 0.01
114 23 0.22
115 35 0.34
116 36 0.35
117 3 0.03
118 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (118 bp):
CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAATGC
CTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGC
Found at i:35721186 original size:14 final size:14
Alignment explanation
Indices: 35721167--35721193 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35721157 ATATTAAAAA
35721167 ATAATTAAGAACAC
1 ATAATTAAGAACAC
35721181 ATAATTAAGAACA
1 ATAATTAAGAACA
35721194 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:35723709 original size:22 final size:23
Alignment explanation
Indices: 35723684--35723735 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
35723674 TATAAAACCT
35723684 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
**
35723706 AATAAAAAGTAGTCTTAAATTAA
1 AATAAAAAGTAGTCTTAAAGAAA
35723729 AATAAAA
1 AATAAAA
35723736 GGAACAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.23
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:35734411 original size:22 final size:22
Alignment explanation
Indices: 35734385--35734429 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
35734375 CCCAGTTAAG
35734385 CACAAGGTTTGTTTCCTCACAT
1 CACAAGGTTTGTTTCCTCACAT
35734407 CACAAGGTTTGTTTCCTCACAT
1 CACAAGGTTTGTTTCCTCACAT
35734429 C
1 C
35734430 TTTTTAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (22 bp):
CACAAGGTTTGTTTCCTCACAT
Found at i:35737857 original size:80 final size:79
Alignment explanation
Indices: 35737703--35737867 Score: 267
Period size: 80 Copynumber: 2.1 Consensus size: 79
35737693 AACCCAAGTA
* *
35737703 CCTTTGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
1 CCTTCGGGACTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
*
35737768 AACTCGCACAAATG
66 AACTAGCACAAATG
**
35737782 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
*
35737847 TCACTAGCACAAATG
65 TAACTAGCACAAATG
35737862 CCTTCG
1 CCTTCG
35737868 AATCTTAGTC
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 12 0.15
80 67 0.85
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
AACTAGCACAAATG
Found at i:35737875 original size:40 final size:40
Alignment explanation
Indices: 35737728--35737867 Score: 253
Period size: 40 Copynumber: 3.5 Consensus size: 40
35737718 CGGATATAAC
35737728 AACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
1 AACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
*
35737768 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 AACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
35737808 AACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
1 AACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
* *
35737848 CACTAGCACAAATGCCTTCG
1 AACTCGCACAAATGCCTTCG
35737868 AATCTTAGTC
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
AACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
Found at i:35748566 original size:27 final size:27
Alignment explanation
Indices: 35748411--35748553 Score: 191
Period size: 27 Copynumber: 5.3 Consensus size: 27
35748401 AAAAAGTAAT
* *
35748411 GGTATTTCGGTAATTTTAGAAA-TTGAG
1 GGTATTTCGGTAATTTTACAAACTAG-G
* * *
35748438 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTCGGTAATTTTACAAACTAGG
35748465 GGTATTTCGGTAATTTTACAAACT-GG
1 GGTATTTCGGTAATTTTACAAACTAGG
*
35748491 GGATATTTTGGTAATTTTACAAACTAGG
1 GG-TATTTCGGTAATTTTACAAACTAGG
*
35748519 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAAACTAGG
35748546 GGTATTTC
1 GGTATTTC
35748554 AATAATTTCA
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
26 3 0.03
27 95 0.92
28 5 0.05
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAACTAGG
Found at i:35748599 original size:27 final size:27
Alignment explanation
Indices: 35748565--35748762 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
35748555 ATAATTTCAC
*
35748565 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
35748592 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
** **
35748619 AATTAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
35748646 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
35748673 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
35748700 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
35748727 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
35748754 AATCGAGGG
1 AATCGAGGG
35748763 CATTTCAGTA
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:35748681 original size:81 final size:81
Alignment explanation
Indices: 35748565--35748762 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
35748555 ATAATTTCAC
* * * *
35748565 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATTAAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCAAGGGT
*
35748629 AAAACAGTAATTCTGTA
65 AAAACAGTAATTCTATA
* *
35748646 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
*
35748711 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
*
35748727 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
35748763 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
AAACAGTAATTCTATA
Found at i:35757595 original size:8 final size:8
Alignment explanation
Indices: 35757578--35757609 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
35757568 TTCTGGCTTG
35757578 TCAGCCTT
1 TCAGCCTT
*
35757586 TCAGCTTT
1 TCAGCCTT
35757594 TCAGCCTT
1 TCAGCCTT
35757602 TCAGCCTT
1 TCAGCCTT
35757610 CGTAGTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.12, C:0.34, G:0.12, T:0.41
Consensus pattern (8 bp):
TCAGCCTT
Found at i:35757597 original size:16 final size:16
Alignment explanation
Indices: 35757573--35757606 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
35757563 CATTTTTCTG
35757573 GCTTGTCAGCCTTTCA
1 GCTTGTCAGCCTTTCA
*
35757589 GCTTTTCAGCCTTTCA
1 GCTTGTCAGCCTTTCA
35757605 GC
1 GC
35757607 CTTCGTAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.32, G:0.18, T:0.38
Consensus pattern (16 bp):
GCTTGTCAGCCTTTCA
Found at i:35761441 original size:30 final size:30
Alignment explanation
Indices: 35761405--35761465 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
35761395 ATTCCCGAGC
* * *
35761405 TTAGGGGCAAAAGTGTAATTATGCAAAAGT
1 TTAGGGGAAAAAATATAATTATGCAAAAGT
* *
35761435 TTAGGGGAAAAAATATAATTTTGCCAAAGT
1 TTAGGGGAAAAAATATAATTATGCAAAAGT
35761465 T
1 T
35761466 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TTAGGGGAAAAAATATAATTATGCAAAAGT
Found at i:35770758 original size:27 final size:27
Alignment explanation
Indices: 35770728--35770808 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
35770718 TTTATGAAAG
35770728 AAAACATCTCAAAAGCATAAATATAAC
1 AAAACATCTCAAAAGCATAAATATAAC
***
35770755 AAAACA--T---AAG-A-AAACCCAA-
1 AAAACATCTCAAAAGCATAAATATAAC
35770774 AAGAACATCTCAAAAGCATAAATATAAC
1 AA-AACATCTCAAAAGCATAAATATAAC
35770802 AAAACAT
1 AAAACAT
35770809 AAGAAAACCC
Statistics
Matches: 39, Mismatches: 6, Indels: 18
0.62 0.10 0.29
Matches are distributed among these distances:
19 2 0.05
20 9 0.23
21 1 0.03
22 4 0.10
25 4 0.10
26 1 0.03
27 16 0.41
28 2 0.05
ACGTcount: A:0.62, C:0.19, G:0.05, T:0.15
Consensus pattern (27 bp):
AAAACATCTCAAAAGCATAAATATAAC
Found at i:35770795 original size:47 final size:47
Alignment explanation
Indices: 35770730--35770822 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
35770720 TATGAAAGAA
35770730 AACATCTCAAAAGCATAAATATAACAAAACATAAGAAAACCCAAAAG
1 AACATCTCAAAAGCATAAATATAACAAAACATAAGAAAACCCAAAAG
35770777 AACATCTCAAAAGCATAAATATAACAAAACATAAGAAAACCCAAAA
1 AACATCTCAAAAGCATAAATATAACAAAACATAAGAAAACCCAAAA
35770823 CTCCTGAAGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.62, C:0.19, G:0.05, T:0.13
Consensus pattern (47 bp):
AACATCTCAAAAGCATAAATATAACAAAACATAAGAAAACCCAAAAG
Found at i:35776124 original size:46 final size:46
Alignment explanation
Indices: 35776071--35776195 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
35776061 TATTTGGGCA
*
35776071 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
*
35776117 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
* *
35776163 CCCGAGCTCGTTGAGTTGAG-TCTGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTT
35776196 GGCCTCCCCA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 1 0.01
46 72 0.99
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
Found at i:35786347 original size:18 final size:17
Alignment explanation
Indices: 35786321--35786354 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
35786311 GCCAAAAGGA
35786321 AAAAGAAAAATTAGAAAG
1 AAAAGAAAAATT-GAAAG
*
35786339 AAAATAAAAATTGAAA
1 AAAAGAAAAATTGAAA
35786355 TTGAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAAGAAAAATTGAAAG
Found at i:35828320 original size:16 final size:16
Alignment explanation
Indices: 35828299--35828329 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35828289 ACTTTTTTAG
35828299 CTTTTCAGCCTTTCAA
1 CTTTTCAGCCTTTCAA
*
35828315 CTTTTCAGCTTTTCA
1 CTTTTCAGCCTTTCA
35828330 GCCTTTGCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.06, T:0.48
Consensus pattern (16 bp):
CTTTTCAGCCTTTCAA
Found at i:35832653 original size:28 final size:28
Alignment explanation
Indices: 35832588--35832738 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
35832578 GAGATTGGCG
* * * *
35832588 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
35832617 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
35832645 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
35832673 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
35832701 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
35832728 CTGAGTGTGCG
1 CTAAGTGTGCG
35832739 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:35838504 original size:12 final size:12
Alignment explanation
Indices: 35838483--35838518 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
35838473 TGTCACATGA
*
35838483 ATTAAATTAATT
1 ATTAATTTAATT
35838495 ATTAATTTAATT
1 ATTAATTTAATT
35838507 ATTAATTTAATT
1 ATTAATTTAATT
35838519 TAATTTGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTAATTTAATT
Found at i:35840533 original size:39 final size:39
Alignment explanation
Indices: 35840490--35840646 Score: 217
Period size: 39 Copynumber: 4.0 Consensus size: 39
35840480 CCGGACGTAT
* * *
35840490 TTCCAGCACGTAGCCTGCAGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
*
35840529 TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
**
35840568 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
* * *
35840607 TTCCAACATATACCCTGC-GAACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAG-ACCCTAAGTCCGGATATAA
35840646 T
1 T
35840647 CATCACTGAA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 107 0.99
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
Found at i:35848693 original size:39 final size:39
Alignment explanation
Indices: 35848640--35848806 Score: 244
Period size: 39 Copynumber: 4.3 Consensus size: 39
35848630 GGATTTTAGC
* * * *
35848640 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
35848679 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
35848718 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* * *
35848757 CCGGATATAATTCCAGCATATAGCCCGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
35848796 CCGGATATAAT
1 CCGGATATAAT
35848807 CATCACTGAA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:35856728 original size:39 final size:39
Alignment explanation
Indices: 35856685--35856841 Score: 260
Period size: 39 Copynumber: 4.0 Consensus size: 39
35856675 CTGGACATAT
* * *
35856685 TTCCAGCACATAGCCCGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
35856724 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
35856763 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
35856802 TTCCAGCATATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
35856841 T
1 T
35856842 CATCACTGAA
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:35863243 original size:82 final size:81
Alignment explanation
Indices: 35863127--35863282 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
35863117 AAATTGTACA
* * * *
35863127 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
35863191 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
35863208 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
35863273 TGCGAGTTGA
65 TGCGAATTGA
35863283 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35863250 original size:55 final size:52
Alignment explanation
Indices: 35863126--35863279 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
35863116 TAAATTGTAC
* *
35863126 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
35863179 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
35863234 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
35863280 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:35863284 original size:27 final size:27
Alignment explanation
Indices: 35863127--35863282 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
35863117 AAATTGTACA
*
35863127 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
35863154 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
35863181 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
35863208 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
35863236 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
35863263 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
35863283 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:35863293 original size:27 final size:27
Alignment explanation
Indices: 35863119--35863303 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
35863109 GCGGGATTAA
*
35863119 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
35863146 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
35863173 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
35863200 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
35863228 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
35863255 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
35863282 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
35863304 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:35863294 original size:82 final size:81
Alignment explanation
Indices: 35863119--35863303 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
35863109 GCGGGATTAA
* * * *
35863119 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
35863184 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
35863200 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
35863264 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
35863282 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
35863304 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:35867451 original size:57 final size:57
Alignment explanation
Indices: 35867363--35867476 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
35867353 AGTAGCTTTT
35867363 GGGCTCGCCGGTTATTACCGACGATTTGTGAAAGGTTTCTCGATGATAGCCACACCA
1 GGGCTCGCCGGTTATTACCGACGATTTGTGAAAGGTTTCTCGATGATAGCCACACCA
35867420 GGGCTCGCCGGTTATTACCGACGATTTGTGAAAGGTTTCTCGATGATAGCCACACCA
1 GGGCTCGCCGGTTATTACCGACGATTTGTGAAAGGTTTCTCGATGATAGCCACACCA
35867477 ATGACGAAGC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (57 bp):
GGGCTCGCCGGTTATTACCGACGATTTGTGAAAGGTTTCTCGATGATAGCCACACCA
Found at i:35871090 original size:27 final size:26
Alignment explanation
Indices: 35871060--35871235 Score: 151
Period size: 27 Copynumber: 6.5 Consensus size: 26
35871050 AAATTGTACA
35871060 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
35871087 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
35871114 GCACTAAGTGTGCGAATTGACCATG-C
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
35871140 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * *
35871168 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
35871195 GCACTAAGTGTGCGAGTTGA-T-TGTAT
1 GCACTAAGTGTGCGA-TTGACTATGT-T
*
35871221 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
35871236 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.02
26 16 0.13
27 87 0.70
28 18 0.15
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:35871120 original size:54 final size:55
Alignment explanation
Indices: 35871059--35871209 Score: 168
Period size: 54 Copynumber: 2.8 Consensus size: 55
35871049 TAAATTGTAC
*
35871059 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAAT-GAA-TATG-
1 AGCACTAAGTGTGCGATT-GACTATGTCGCACTAAGTGTGCGAAATCGAACTATGT
* * *
35871112 ATGCACTAAGTGTGCGAATTGACCATG-CGCACTAAGTGTGCG-AGTCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGACTATGTCGCACTAAGTGTGCGAAATCGAACTATGT
* * *
35871167 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA-TTGACTATGTCGCACTAAGTGTGCGA
35871210 GTTGATTGTA
Statistics
Matches: 82, Mismatches: 8, Indels: 13
0.80 0.08 0.13
Matches are distributed among these distances:
52 2 0.02
53 18 0.22
54 44 0.54
55 18 0.22
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTGACTATGTCGCACTAAGTGTGCGAAATCGAACTATGT
Found at i:35871175 original size:81 final size:80
Alignment explanation
Indices: 35871060--35871214 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 80
35871050 AAATTGTACA
* * * *
35871060 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
35871124 TGCGAATTGACCATGC
65 TGCGAATTGACCATGC
** *
35871140 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
35871205 TGCGAGTTGA
65 TGCGAATTGA
35871215 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
80 18 0.28
81 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (80 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGC
Found at i:35871224 original size:54 final size:53
Alignment explanation
Indices: 35871052--35871235 Score: 167
Period size: 54 Copynumber: 3.4 Consensus size: 53
35871042 GCGGGATTAA
* * * * **
35871052 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATG
1 ATTGTATAGCACTAAGTGTGCGATTTGA-TACGTGGCACTAAGTGTGCGAGTTG
* * * *
35871106 AATATG-AT-GCACTAAGTGTGCGAATTGA-CCATGCGCACTAAGTGTGCGAGTCTA
1 -AT-TGTATAGCACTAAGTGTGCGATTTGATACGTG-GCACTAAGTGTGCGAGT-TG
* * *
35871160 ACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGATTTGA-TACGTGGCACTAAGTGTGCGAGTTG
*
35871214 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
35871236 GGCTCAATAT
Statistics
Matches: 101, Mismatches: 21, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
52 2 0.02
53 17 0.17
54 57 0.56
55 20 0.20
56 5 0.05
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
ATTGTATAGCACTAAGTGTGCGATTTGATACGTGGCACTAAGTGTGCGAGTTG
Found at i:35879032 original size:93 final size:94
Alignment explanation
Indices: 35878845--35879422 Score: 805
Period size: 93 Copynumber: 6.1 Consensus size: 94
35878835 CAGCCAAGAG
* * * *
35878845 AGTGTAT-TATGTTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTAATA
1 AGTGTATATATG-TAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
35878909 AGGCCTAATGGCTGA-GTGTTGAATGTGAA
65 AGGCCTAATGGCCGATGTGATGAATGTGAA
*
35878938 AGTG-ATGTATGTAATAAGGCCTAATAG-CGATGTGATGAATGTGAAAGTGTATGTATATGTGAT
1 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATATGTGAT
35879001 AAGG-CTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
35879031 AGTGTATGTATATATGTAA-AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
1 A--G--TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
35879095 ATAAGGCCTAATAG-CGATGTGATGAATGTGAA
62 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
35879127 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
35879192 GGCCTAATAGCCGAGGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
35879221 GGTGTATATATGT-ATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
35879285 GGTCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* *
35879314 AGTGTAATATATG-AGATAAGGCCTAATGGCCGATGGCGATGAATGTGAAAGTGTATATATGTGA
1 AGTGT-ATATATGTA-ATAAGGCCTAATAGCCGAT-GTGATGAATGTGAAAGTGTATATATGTGA
35879378 TAAGGCCTAATGGCCGATGTGATGAATGTGAA
63 TAAGGCCTAATGGCCGATGTGATGAATGTGAA
35879410 AGTGTATATATGT
1 AGTGTATATATGT
35879423 GACAGGGCCG
Statistics
Matches: 439, Mismatches: 28, Indels: 33
0.88 0.06 0.07
Matches are distributed among these distances:
91 24 0.05
92 37 0.08
93 168 0.38
94 36 0.08
95 26 0.06
96 95 0.22
97 20 0.05
98 33 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:35879126 original size:189 final size:190
Alignment explanation
Indices: 35878861--35879416 Score: 824
Period size: 189 Copynumber: 2.9 Consensus size: 190
35878851 TTATGTTGAT
*
35878861 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTAATAAGGCCTAATGGCTGA-G
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGC-GATG
* *
35878925 TGTTGAATGTGAAAGTG-ATGTATGTAATAAGGCCTAATAG-CGATGTGATGAATGTGAAAGTGT
65 TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
35878988 ATGTATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAA
130 A--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAA
* * * *
35879050 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCGATGT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCGATGT
* * *
35879115 GATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* * * *
35879180 TATGTGTGATAAGGCCTAATAGCCGAGGTGATGAATGTG-AAG-G--TGTATATATGTAT
131 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAA
* *
35879236 AAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGTCTAATGGCCGATG
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGG-CGATG
* *
35879301 TGATGAATGTGAAAGTGTAATATATG-AGATAAGGCCTAATGGCCGATGGCGATGAATGTGAAAG
65 TGATGAATGTGAAAGTGT-ATATATGTA-ATAAGGCCTAATAGCCGAT-GTGATGAATGTGAAAG
35879365 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
127 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
35879417 ATATGTGACA
Statistics
Matches: 327, Mismatches: 28, Indels: 20
0.87 0.07 0.05
Matches are distributed among these distances:
186 65 0.20
187 23 0.07
188 26 0.08
189 143 0.44
190 45 0.14
191 24 0.07
193 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (190 bp):
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCGATGT
GATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAA
Found at i:35879258 original size:236 final size:233
Alignment explanation
Indices: 35878845--35879424 Score: 857
Period size: 236 Copynumber: 2.5 Consensus size: 233
35878835 CAGCCAAGAG
* *
35878845 AGTGTATTATGT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTAATA
1 AGTGTA-TATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * *
35878909 AGGCCTAATGGCTGAGTGTTGAATGTGAAAGTG-ATGTATGTAATAAGGCCTAATAGCGATGTGA
65 AGGCCTAATGGCCGAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCGAGGTGA
35878973 TGAATGTGAAAGTGTATGTATATGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
130 TGAATGTGAAAGTGTA-GTATATGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAA--G--T
35879038 GTATATATGTAA-AAGGCCTAATAGCCGATGTGATGAATGTGAA
190 GTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35879081 AGTGTATATGTGTGATAAGGCCTAATAG-CGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
35879145 GGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAGGTG
66 GGCCTAATGGCCGA-GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG-CGAGGTG
*
35879210 ATGAATGTGAAGGTGTA-TATATGT-ATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTA
129 ATGAATGTGAAAGTGTAGTATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
35879273 TATATGTAATAAGGTCTAATGGCCGATGTGATGAATGTGAA
193 TATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
35879314 AGTGTAATATATGAGATAAGGCCTAATGGCCGATGGCGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGT-ATATGTGTGATAAGGCCTAATGGCCGAT-GTGATGAATGTGAAAGTGTATATATGTGAT
35879379 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
64 AAGGCCTAATGGCCGA-GTGATGAATGTGAAAGTGTATATATGTGA
35879425 CAGGGCCGAG
Statistics
Matches: 313, Mismatches: 22, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
232 13 0.04
233 34 0.11
234 21 0.07
235 60 0.19
236 143 0.46
237 20 0.06
238 22 0.07
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (233 bp):
AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCGAGGTGAT
GAATGTGAAAGTGTAGTATATGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:35879423 original size:47 final size:47
Alignment explanation
Indices: 35878845--35879475 Score: 828
Period size: 47 Copynumber: 13.4 Consensus size: 47
35878835 CAGCCAAGAG
35878845 AGTGTAT-TATGTTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATG-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
35878892 AGTGTATGTATGTAATAAGGCCTAATGGCTGA-GTGTTGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
35878938 AGTG-ATGTATGTAATAAGGCCTAATAG-CGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
35878983 AGTGTATGTATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
35879031 AGTGTATGTATATATGTAAAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
35879081 AGTGTATATGTGTGATAAGGCCTAATAG-CGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
35879127 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
35879174 AGTGTATATGTGTGATAAGGCCTAATAGCCGAGGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
35879221 GGTGTATATATGT-ATAAGGTCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
35879267 AGTGTATATATGTAATAAGGTCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
35879314 AGTGTAATATATGAGATAAGGCCTAATGGCCGATGGCGATGAATGTGAA
1 AGTGT-ATATATGTGATAAGGCCTAATGGCCGAT-GTGATGAATGTGAA
35879363 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
35879410 AGTGTATATATGTGACAGGGCCGAGTGGCAC-ACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGC-CGATGTGATGAATGTGAA
* *
35879457 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
35879476 TCCCAAAAGG
Statistics
Matches: 531, Mismatches: 40, Indels: 26
0.89 0.07 0.04
Matches are distributed among these distances:
44 2 0.00
45 39 0.07
46 106 0.20
47 222 0.42
48 108 0.20
49 23 0.04
50 31 0.06
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:35879648 original size:37 final size:37
Alignment explanation
Indices: 35879592--35879670 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35879582 CCGAGCTCTA
* * *
35879592 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
35879629 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
35879666 AAGAC
1 AAGAC
35879671 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35881585 original size:29 final size:29
Alignment explanation
Indices: 35881550--35881622 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
35881540 GTTGTGAGAT
* *
35881550 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
35881579 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
35881608 TGGCACT-AGTGTGCG
1 TGGCACTAAGTGTGCG
35881623 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 13 0.32
29 27 0.68
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:35882070 original size:40 final size:40
Alignment explanation
Indices: 35882011--35882164 Score: 224
Period size: 39 Copynumber: 3.9 Consensus size: 40
35882001 GAGTTACTAA
35882011 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
35882050 ATCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
35882090 AT-CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** *
35882129 ATCCGTGCTAAACCCCGAAGAGCA-TCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
35882165 CGTGTATTCG
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 59 0.57
40 45 0.43
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:35882107 original size:79 final size:77
Alignment explanation
Indices: 35882014--35882164 Score: 221
Period size: 79 Copynumber: 1.9 Consensus size: 77
35882004 TTACTAAATC
* ** *
35882014 CGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCAT
1 CGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCA-TCAT
35882079 GCTAGTGATGTAT
65 GCTAGTGATGTAT
* *
35882092 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATCAT
1 CGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATCAT
*
35882157 GCTGGTGA
65 GCTAGTGA
35882165 CGTGTATTCG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 21 0.32
79 44 0.68
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
CGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATCATG
CTAGTGATGTAT
Found at i:35885871 original size:46 final size:47
Alignment explanation
Indices: 35885648--35886128 Score: 619
Period size: 47 Copynumber: 10.3 Consensus size: 47
35885638 CAGCCAAGAG
* *
35885648 GTGTATATATGTGA-AATGCCTAA-GGCTGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
35885693 GTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
35885740 GTGTATGTATATGTGATAGGGCCTAATGG-CGATGTGATGAATGTGAAA
1 GTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
35885788 GTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGAATGAATGT-AAA
1 --G--TGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGAATGTGAAA
* *
35885839 GTGTATATGTGTGATAAGG-CTAATAGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
35885885 GTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
35885932 TTGTATATTGTGTGATAAGGCCTAAT-G-CGATGTGATG-ATGTGAAA
1 GTGTATA-TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
35885977 GTG--TATATGTAATAAGGTCTAATGGCCGATG-G-TGAGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAA
*
35886021 GTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
35886068 GTGTATATACGTGATAAGGCCT-ATGGCCGATGTTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATG-TGATGAATGTGAAA
35886115 GTGTATATATGTGA
1 GTGTATATATGTGA
35886129 CAGGTGCCGA
Statistics
Matches: 390, Mismatches: 24, Indels: 42
0.86 0.05 0.09
Matches are distributed among these distances:
42 17 0.04
43 4 0.01
44 16 0.04
45 30 0.08
46 90 0.23
47 131 0.34
48 40 0.10
49 20 0.05
50 20 0.05
51 10 0.03
52 12 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
Found at i:35886084 original size:183 final size:189
Alignment explanation
Indices: 35885648--35886127 Score: 660
Period size: 183 Copynumber: 2.6 Consensus size: 189
35885638 CAGCCAAGAG
* * * *
35885648 GTGTATATATGTGA-AATGCCTAA-GGCTGATGTGATGAATGTGAAAGTGTATGTATGTAATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
35885711 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAGGGCCTAATGGCGATGTG
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCGATGTG
35885776 ATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGAATGAATGTAAA
131 ATGAATGTGAAAG-G-ATG-ATATATGTAATAAGGCCTAATAGCCGATGTGAATG-ATGTAAA
* * *
35885839 GTGTATATGTGTGATAAGG-CTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
35885903 GCCTAATAGCCGACGTGATGAATGTGAAATTGTATAT-TGTGTGATAAGGCCTAAT-GCGATGTG
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCGATGTG
* *
35885966 ATG-ATGTGAAA-G-TG-TATATGTAATAAGGTCTAATGGCCGATGGTG-A-GATGTGAAA
131 ATGAATGTGAAAGGATGATATATGTAATAAGGCCTAATAGCCGAT-GTGAATGATGT-AAA
* *
35886021 GTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATACGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
35886086 GCCT-ATGGCCGATGTTGATGAATGTGAAAGTGTATATATGTG
66 GCCTAATGGCCGATG-TGATGAATGTGAAAGTGTATATATGTG
35886128 ACAGGTGCCG
Statistics
Matches: 259, Mismatches: 23, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
181 4 0.02
182 30 0.12
183 92 0.36
184 7 0.03
185 2 0.01
187 1 0.00
189 8 0.03
190 11 0.04
191 33 0.13
192 71 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (189 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCGATGTG
ATGAATGTGAAAGGATGATATATGTAATAAGGCCTAATAGCCGATGTGAATGATGTAAA
Found at i:35889088 original size:13 final size:12
Alignment explanation
Indices: 35889064--35889096 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
35889054 TGGGGGTTTT
35889064 GGGTGTGGGGGG
1 GGGTGTGGGGGG
35889076 GGGTGTGGGGGG
1 GGGTGTGGGGGG
35889088 GGG-GTGGGG
1 GGGTGTGGGG
35889097 TTGTGTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.00, C:0.00, G:0.85, T:0.15
Consensus pattern (12 bp):
GGGTGTGGGGGG
Found at i:35889779 original size:47 final size:47
Alignment explanation
Indices: 35889708--35890230 Score: 388
Period size: 48 Copynumber: 10.4 Consensus size: 47
35889698 CCACTCCGGC
*
35889708 GCCTTGTCACATAATATACACTTTCACATTCATCACATCGGCCATTTAG
1 GCCTTATCACAT-ATATACACTTTCACATTCATCACATCGGCCA-TTAG
* *
35889757 G-CTTATCACGTATATACACTTTCAACATTCATCGCGATC-GCCATTAG
1 GCCTTATCACATATATACACTTTC-ACATTCATCAC-ATCGGCCATTAG
35889804 G-CTTATCACATATATACACTTTCACATTCATACACAATTCGGGCCCATTAG
1 GCCTTATCACATATATACACTTTCACATTCAT-CAC-A-TC-GG-CCATTAG
* *
35889855 ACCTTATTAACA-ATATTATCAC-TTCACA-TCATCACATCGG-CACTTAG
1 GCCTTA-TCACATATA-TA-CACTTTCACATTCATCACATCGGCCA-TTAG
* * *
35889902 GCCCTTATCAAGCACATATACACTTTCACATT-ATCACGTCGGCTTATTAG
1 G-CCTTATC-A-CATATATACACTTTCACATTCATCACATCGGC-CATTAG
* *
35889952 GCCTTATCACACATATACACTTTCAGCATTCATCAGCA-CGGCTATTAG
1 GCCTTATCACATATATACACTTTCA-CATTCATCA-CATCGGCCATTAG
* *
35890000 GCCTTATCACACATATACACTTTCAACATTCCCCATCACATCGGGCTATTTTTAAAAAGGG
1 GCCTTATCACATATATACACTTTC-ACATT---CATCACATC-GGCCA---TT----A--G
* *
35890061 GCCCTATTACATATATACAATACATTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATAC---AC-TTTCACATTCATCACATCGGCCATTAG
35890112 G-CTTATCACATATGACATACACTTTCACATTCATCACATC-G-CATTAG
1 GCCTTATCACATAT---ATACACTTTCACATTCATCACATCGGCCATTAG
* * *
35890159 GCCTTATTACATACAAATACACTTTCACATTCCATCACCATCAAGCCATTAG
1 GCCTTATCACAT--ATATACACTTTCACATT-CATCA-CATC-GGCCATTAG
*
35890211 GCATTATCACATATAT-CACT
1 GCCTTATCACATATATACACT
35890231 CTCTTGGCTG
Statistics
Matches: 397, Mismatches: 24, Indels: 106
0.75 0.05 0.20
Matches are distributed among these distances:
46 10 0.03
47 84 0.21
48 89 0.22
49 67 0.17
50 30 0.08
51 20 0.05
52 32 0.08
53 17 0.04
54 3 0.01
55 2 0.01
57 2 0.01
59 1 0.00
60 4 0.01
61 25 0.06
64 7 0.02
65 4 0.01
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (47 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
Found at i:35889926 original size:48 final size:46
Alignment explanation
Indices: 35889721--35890230 Score: 277
Period size: 47 Copynumber: 10.2 Consensus size: 46
35889711 TTGTCACATA
* **
35889721 ATATACACTTTCACATTCATCACATCGGCCATTTAGG-CTTATCACGT
1 ATATACACTTTCACA-TCATCACATCGGCTA-TTAGGCCTTATCACAC
* * *
35889768 ATATACACTTTCAACATTCATCGCGATC-GCCATTAGG-CTTATCACAT
1 ATATACACTTTC-ACA-TCATCAC-ATCGGCTATTAGGCCTTATCACAC
* * *
35889815 ATATACACTTTCACATTCATACACAATTCGGGCCCATTAGACCTTATTA-AC
1 ATATACACTTTCACA-TCAT-CAC-A-TC-GG-CTATTAGGCCTTATCACAC
35889866 AATATTATCAC-TTCACATCATCACATCGGC-ACTTAGGCCCTTATCAAGCAC
1 -ATA-TA-CACTTTCACATCATCACATCGGCTA-TTAGG-CCTTATC-A-CAC
* *
35889917 ATATACACTTTCACATTATCACGTCGGCTTATTAGGCCTTATCACAC
1 ATATACACTTTCACATCATCACATCGGC-TATTAGGCCTTATCACAC
35889964 ATATACACTTTCAGCATTCATCAGCA-CGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCA-CA-TCATCA-CATCGGCTATTAGGCCTTATCACAC
* * *
35890012 ATATACACTTTCAACATTCCCCATCACATCGGGCTATTTTTAAAAAGGGGCCCTATTACAT
1 ATATACACTTTC-ACA-T---CATCACATC-GGCTA---TT----A--GGCCTTATCACAC
* *
35890073 ATATACAATACATTTCACATTCATCACATCGGCCATTAGG-CTTATCACAT
1 ATATAC---AC-TTTCACA-TCATCACATCGGCTATTAGGCCTTATCACAC
*
35890123 ATGACATACACTTTCACATTCATCACATC-GC-ATTAGGCCTTATTACATAC
1 AT---ATACACTTTCACA-TCATCACATCGGCTATTAGGCCTTA-T-CACAC
* * * * *
35890173 AAATACACTTTCACATTCCATCACCATCAAGCCATTAGGCATTATCACAT
1 ATATACACTTTCACA-T-CATCA-CATC-GGCTATTAGGCCTTATCACAC
35890223 ATAT-CACT
1 ATATACACT
35890231 CTCTTGGCTG
Statistics
Matches: 385, Mismatches: 26, Indels: 102
0.75 0.05 0.20
Matches are distributed among these distances:
46 9 0.02
47 83 0.22
48 75 0.19
49 69 0.18
50 35 0.09
51 25 0.06
52 28 0.07
53 13 0.03
54 3 0.01
55 2 0.01
57 2 0.01
59 1 0.00
60 4 0.01
61 25 0.06
64 7 0.02
65 4 0.01
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.31
Consensus pattern (46 bp):
ATATACACTTTCACATCATCACATCGGCTATTAGGCCTTATCACAC
Found at i:35924009 original size:40 final size:40
Alignment explanation
Indices: 35923952--35924172 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
35923942 CCAGCATGAT
** *
35923952 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
35923992 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
35924032 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
35924071 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCA-CAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACT-AGCACGAA
* *
35924111 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
35924151 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
35924173 CATCATTCAA
Statistics
Matches: 158, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 3 0.02
39 59 0.37
40 86 0.54
41 9 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:35924055 original size:39 final size:40
Alignment explanation
Indices: 35923939--35924094 Score: 242
Period size: 40 Copynumber: 3.9 Consensus size: 40
35923929 CGAATACACG
* * ** * *
35923939 TCACCAGCATGATTGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
35923979 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
35924019 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
35924058 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
35924095 TTAGTAACTC
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 39 0.36
40 68 0.64
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:35924062 original size:79 final size:80
Alignment explanation
Indices: 35923926--35924172 Score: 254
Period size: 79 Copynumber: 3.1 Consensus size: 80
35923916 AGGCACGAAG
* * * ** * *
35923926 GCCCGAATACACGTCACCAGCATGATTGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGA
1 GCCCGGATACA-GTCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGA
35923991 ATGCTCTTCGGGACTTA
64 ATGCTCTTCGGGACTTA
*
35924008 GCCCGGATACA-TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCATGAAT
1 GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAAT
35924072 GCTCTTCGGGACTTA
66 GCTCTTCGGGACTTA
** * * * **
35924087 GCCCGGATTTAGTAACTCA-CA-CAATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC
1 GCCCGGATACAGTCACT-AGCATGAATGCTCTTCGGA-CTTAGCCCGGATA-CATCAC-TAGCAC
*
35924149 -AAAGC-CTTCGGGACTTA
62 GAATGCTCTTCGGGACTTA
35924166 GCCCGGA
1 GCCCGGA
35924173 CATCATTCAA
Statistics
Matches: 143, Mismatches: 17, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
78 7 0.05
79 87 0.61
80 33 0.23
81 6 0.04
82 10 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAAT
GCTCTTCGGGACTTA
Found at i:35924516 original size:29 final size:29
Alignment explanation
Indices: 35924477--35924555 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
35924467 CTTAATAATC
*
35924477 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
35924507 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
35924536 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
35924556 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:35926518 original size:36 final size:37
Alignment explanation
Indices: 35926446--35926523 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
35926436 TTATTACGAA
* *
35926446 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
35926483 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
35926519 GTCTT
1 GTCTT
35926524 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:35926728 original size:47 final size:47
Alignment explanation
Indices: 35926641--35927276 Score: 912
Period size: 47 Copynumber: 13.4 Consensus size: 47
35926631 GCCTTCGGGA
* * * * * * * *
35926641 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35926688 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35926735 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35926782 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35926829 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
35926876 CTTATTACATATATACACCTTCACATTCATCACCTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
35926923 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35926970 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35927017 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35927064 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35927115 CTTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
35927164 CTTATTACATACATACACTTTCACATTCAACACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35927211 CTTATTACATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35927258 CTTATCACATATATACACT
1 CTTATCACATATATACACT
35927277 CTCTTGGCTG
Statistics
Matches: 544, Mismatches: 41, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
47 447 0.82
48 1 0.00
49 57 0.10
50 1 0.00
51 38 0.07
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35935302 original size:28 final size:28
Alignment explanation
Indices: 35935247--35935362 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
35935237 AGCATCGCTG
* *
35935247 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* *
35935273 CCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* *
35935301 CCAGAAACAGATATTTATGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
*
35935329 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
35935357 CCAGAA
1 CCAGAA
35935363 CGCTTGCTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.05
27 6 0.08
28 69 0.87
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCAGAGCCA
Found at i:35939320 original size:28 final size:28
Alignment explanation
Indices: 35939275--35939344 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
35939265 GATATTGTTA
* * *
35939275 CAGAGTCACAAGATACAGATAATTGTGG
1 CAGAGCCACCAGAAACAGATAATTGTGG
*
35939303 CA-AGGCCACCAGAAACAGATATTTGTGG
1 CAGA-GCCACCAGAAACAGATAATTGTGG
35939331 CAGAGCCACCAGAA
1 CAGAGCCACCAGAA
35939345 CGCTTCCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 34 0.94
29 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (28 bp):
CAGAGCCACCAGAAACAGATAATTGTGG
Found at i:35940620 original size:18 final size:18
Alignment explanation
Indices: 35940564--35940620 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
35940554 GGCTATAGAG
35940564 GAAAAGAAGAAGAAGAGAA
1 GAAAAGAAGAAG-AGAGAA
* * *
35940583 -AATAGATGAAGAGAGTA
1 GAAAAGAAGAAGAGAGAA
*
35940600 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
35940618 GAA
1 GAA
35940621 TTGTCAAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:35948298 original size:46 final size:46
Alignment explanation
Indices: 35948185--35948408 Score: 222
Period size: 46 Copynumber: 4.8 Consensus size: 46
35948175 GATATTTGGG
* *
35948185 CATCC-AAGCTCGTTGAGTTGAATCCAAGTTCACTTATGGATGCGAA
1 CATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
35948231 CTTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * *
35948277 CATCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
* *
35948324 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * ** *
35948370 CCCCCGAGCTCTTTGAGTTGAGTTTGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35948409 GCGGGTTACA
Statistics
Matches: 147, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.03
45 2 0.01
46 102 0.69
47 33 0.22
48 2 0.01
50 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:35962084 original size:40 final size:40
Alignment explanation
Indices: 35962029--35962250 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
35962019 TATTCGGATG
*
35962029 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
35962069 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
35962109 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
35962149 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
35962189 GTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
35962229 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
35962251 TCCTTGGGTT
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:35964619 original size:42 final size:42
Alignment explanation
Indices: 35964562--35964709 Score: 138
Period size: 42 Copynumber: 3.5 Consensus size: 42
35964552 TAGGGTTATG
* * *
35964562 TGTGATTTCGTGTAAGACGATTTTTGAGATATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATGTTTGAGACATGGCATCGATA
* *
35964604 TGTGATTTTGTGTAAGACCATGTTTGGGACATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATGTTTGAGACATGGCATCGATA
* ** * *
35964646 TGAGACATCGTGTAAGACCATAG-TTG-GGCTATCGGCACCGATA
1 TGTGATTTCGTGTAAGACCAT-GTTTGAGAC-AT-GGCATCGATA
** *
35964689 TGTGATCCCATGTAAGACCAT
1 TGTGATTTCGTGTAAGACCAT
35964710 ATCTGGGATA
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
41 2 0.02
42 59 0.68
43 26 0.30
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATGTTTGAGACATGGCATCGATA
Found at i:35966179 original size:48 final size:48
Alignment explanation
Indices: 35966118--35966448 Score: 342
Period size: 48 Copynumber: 6.9 Consensus size: 48
35966108 ACTAGGGTTG
* * * *
35966118 TGAGAGCTGGTGTAAGATCATATCTGGGACATGGTATCAGCCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
35966166 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTCGATA
* * * * *
35966214 TGTGAGCTAGTGTAAGACCATGTCTAGGACATTGCATCGGCCTTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
* * * * * * * * *
35966262 TGTGAGCCAATGAAAGACCATGTTTGGAACATGGCATCGGCATTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
** * *
35966310 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCAACA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
* * * * * * *
35966358 TGTGGGCTAGTGTAAAACCATGTTTGGAACATGGCATGAGGAC-CGATATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA-GCCTCG--ATA
*
35966408 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
35966449 ATCTTACCCT
Statistics
Matches: 233, Mismatches: 45, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.00
48 194 0.83
49 4 0.02
50 34 0.15
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
Found at i:35966294 original size:96 final size:96
Alignment explanation
Indices: 35966118--35966445 Score: 379
Period size: 96 Copynumber: 3.4 Consensus size: 96
35966108 ACTAGGGTTG
* * * * * * *
35966118 TGAGAGCTGGTGTAAGATCATATCTGGGACATGGTATCAGCCTCGATATGAGAGCTAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGAAAGA
* * *
35966183 CCATGTCTGGGACATGGCATCGACCTCGATA
66 CCATGTTTGGAACATGGCATCGACCTAGATA
* * * * * *
35966214 TGTGAGCTAGTGTAAGACCATGTCTAGGACATTGCATCGGCCTTGATATGTGAGCCAATGAAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGAAAGA
* * *
35966279 CCATGTTTGGAACATGGCATCGGCATTGATA
66 CCATGTTTGGAACATGGCATCGACCTAGATA
* * * *
35966310 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCAACATGTGGGCTAGTGTAAA-
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTG-AAAG
* * *
35966374 ACCATGTTTGGAACATGGCATGAGGACCGATATA
65 ACCATGTTTGGAACATGGCAT--CGACCTAGATA
*
35966408 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
35966446 AGCATCTTAC
Statistics
Matches: 193, Mismatches: 36, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
96 149 0.77
97 3 0.02
98 41 0.21
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (96 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGAAAGA
CCATGTTTGGAACATGGCATCGACCTAGATA
Found at i:35966406 original size:144 final size:144
Alignment explanation
Indices: 35966131--35966450 Score: 385
Period size: 144 Copynumber: 2.2 Consensus size: 144
35966121 GAGCTGGTGT
* * * * * *
35966131 AAGATCATATCTGGGACATGGTATCAGCCTCGATATGAGAGCTAGTGTAAGACCATGTCTGGGAC
1 AAGACCATGTCTGGAACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGAC
* * * * *
35966196 ATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATTGCATCGGCCTTG-A
66 ATGGCATCGACCTCAACATGTGAGCTAGTGTAAAACCATGTCTAGGACATGGCATAGGCC-TGAA
*
35966260 TATGTGAGCCAATGA
130 TATGAGAGCCAATGA
* *
35966275 AAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGAC
1 AAGACCATGTCTGGAACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGAC
* * * *
35966340 ATGGCATTGGCCTCAACATGTGGGCTAGTGTAAAACCATGT-TTGGAACATGGCATGAGGACC-G
66 ATGGCATCGACCTCAACATGTGAGCTAGTGTAAAACCATGTCTAGG-ACATGGCAT-AGG-CCTG
* *
35966403 ATATATGAGAGCCAGTGT
128 A-ATATGAGAGCCAATGA
*
35966421 AAGACCATGTCTGGGACATGGCATCAGCAT
1 AAGACCATGTCTGGAACATGGCATCAGCAT
35966451 CTTACCCTTT
Statistics
Matches: 148, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
143 3 0.02
144 101 0.68
145 2 0.01
146 42 0.28
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (144 bp):
AAGACCATGTCTGGAACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGAC
ATGGCATCGACCTCAACATGTGAGCTAGTGTAAAACCATGTCTAGGACATGGCATAGGCCTGAAT
ATGAGAGCCAATGA
Found at i:35974263 original size:93 final size:93
Alignment explanation
Indices: 35974152--35974322 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
35974142 ACCCATAGGT
* * * *
35974152 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTTGGACTCAAGTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
35974217 CAAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
* * *
35974245 GAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
* *
35974310 CGAGTTCGGATGC
66 CAAGCTCGGATGC
35974323 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:35974319 original size:46 final size:46
Alignment explanation
Indices: 35974144--35974319 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
35974134 TGTAACCCAC
* * *
35974144 CCATAGGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * * *
35974190 CCATAAATGAACTTGGACTCAAGTCAACAAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
35974236 ACATCTCTCGAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
35974283 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
35974320 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 64 0.63
47 28 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:35976034 original size:57 final size:57
Alignment explanation
Indices: 35975946--35976059 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 57
35975936 AGGAAGACTT
** *
35975946 CTGGCTTCGTTGTTTAGAGCCTCTTGCTCTACCCAAATATGCTACCGATGAAGTGGA
1 CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCAAATATCCTACCGATGAAGTGGA
*
35976003 CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCGAATATCCTACCGATGAAGTGGA
1 CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCAAATATCCTACCGATGAAGTGGA
35976060 GCGTTCATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (57 bp):
CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCAAATATCCTACCGATGAAGTGGA
Found at i:35980907 original size:48 final size:48
Alignment explanation
Indices: 35980828--35981155 Score: 347
Period size: 48 Copynumber: 6.8 Consensus size: 48
35980818 ACTAGGGTTG
* * **
35980828 TGAGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCAACCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* *
35980876 TGAGAGCTAGTGTAAGACTATGTATGGGACATGGCATCGGCCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* * * * *
35980924 TGTGCGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* * * * * * *
35980972 TGTGAGCCACTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* *
35981020 TAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC--GATA
* * * * *
35981070 TG-G-GCTAGTGTAAAACCATGTTTGGAACATGGCATGAGGAC-CGATATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-CGGCCTCG--ATA
* *
35981118 TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
35981156 AGCATCTTAC
Statistics
Matches: 235, Mismatches: 38, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
48 197 0.84
49 5 0.02
50 33 0.14
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
Done.