Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 107 of 343
Found at i:35981100 original size:144 final size:146
Alignment explanation
Indices: 35980828--35981161 Score: 399
Period size: 144 Copynumber: 2.3 Consensus size: 146
35980818 ACTAGGGTTG
* * * * *
35980828 TGAGAGCTAGTGTAAGACCATGTTT-GAGACATGGCATCAACCTCGATATGAGAGCTAGTGTAAG
1 TGAGAGCCACTGTAAGACCATGTTTGGA-ACATGGCATCAGCATCGATATAAGAGCTAGTGTAAG
* * * * *
35980892 ACTATGTATGGGACATGGCATCGGCCTCGATATGTGCGCCAGTGTAAGACCATGTCTAGGACATG
65 ACCATGTATGGGACATGGCATCGGCCTCAACATATGCGCCAGTGTAAAACCATGTCTAGGACATG
* *
35980957 GCAT-CGG-CC-TTGATA
130 GCATGAGGACCGAT-ATA
* * *
35980972 TGTGAGCCACTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATAAGAGCTAGTGTAAGA
1 TGAGAGCCACTGTAAGACCATGTTTGGAACATGGCATCAGCATCGATATAAGAGCTAGTGTAAGA
* * * *
35981037 CCATGTCTGGGACATGGCATCGGCCTCAACATATGGGCTAGTGTAAAACCATGT-TTGGAACATG
66 CCATGTATGGGACATGGCATCGGCCTCAACATATGCGCCAGTGTAAAACCATGTCTAGG-ACATG
35981101 GCATGAGGACCGATATA
130 GCATGAGGACCGATATA
* * * *
35981118 TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCAGCATC
1 TGAGAGCCACTGTAAGACCATGTTTGGAACATGGCATCAGCATC
35981162 TTACCCTTTT
Statistics
Matches: 159, Mismatches: 26, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
143 3 0.02
144 109 0.69
145 4 0.03
146 42 0.26
147 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (146 bp):
TGAGAGCCACTGTAAGACCATGTTTGGAACATGGCATCAGCATCGATATAAGAGCTAGTGTAAGA
CCATGTATGGGACATGGCATCGGCCTCAACATATGCGCCAGTGTAAAACCATGTCTAGGACATGG
CATGAGGACCGATATA
Found at i:35983422 original size:26 final size:27
Alignment explanation
Indices: 35983393--35983446 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
35983383 TCACACAAGT
*
35983393 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
35983419 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
35983446 T
1 T
35983447 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:35983501 original size:26 final size:27
Alignment explanation
Indices: 35983465--35983591 Score: 148
Period size: 27 Copynumber: 4.7 Consensus size: 27
35983455 TACCCCATAA
* * *
35983465 GGGTATCTCGGTAATTCTACCCTAC-T
1 GGGTATTTCGGTAATTCTACCTTACAG
* *
35983491 GGGTATTTCGGTAATTCTATCATACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
*** *
35983518 GGGTATTTTAATAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCTTACAG
35983545 GGGTATTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
**
35983572 GGGTATTTTAGTAATTCTAC
1 GGGTATTTCGGTAATTCTAC
35983592 AACTTATCCA
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 22 0.26
27 62 0.74
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCTTACAG
Found at i:35983560 original size:54 final size:53
Alignment explanation
Indices: 35983476--35983591 Score: 178
Period size: 54 Copynumber: 2.2 Consensus size: 53
35983466 GGTATCTCGG
* *
35983476 TAATTCTACCCTACTGGGTATTTCGGTAATTCTATCATACAGGGGTATTTTAA
1 TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCATACAGGGGTATTTTAA
* * *
35983529 TAATTCTACCTTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAG
1 TAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCATACAGGGGTATTTTAA
35983583 TAATTCTAC
1 TAATTCTAC
35983592 AACTTATCCA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 13 0.23
54 44 0.77
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (53 bp):
TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCATACAGGGGTATTTTAA
Found at i:35990290 original size:27 final size:26
Alignment explanation
Indices: 35990243--35990293 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
35990233 CAAGGCTGCC
*
35990243 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
35990269 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
35990294 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:35990967 original size:27 final size:27
Alignment explanation
Indices: 35990930--35991074 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
35990920 GGCAAAAATG
* * * *
35990930 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
35990957 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
35990983 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * * *
35991011 ATAGTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
35991038 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
35991065 GTAATTCTAC
1 GTAATTCTAC
35991075 AACTTATCTA
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 101 0.99
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:36002708 original size:46 final size:46
Alignment explanation
Indices: 36002658--36002833 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
36002648 TGATTGAGCA
36002658 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36002704 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36002749 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
36002797 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36002834 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36002814 original size:93 final size:93
Alignment explanation
Indices: 36002655--36002826 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
36002645 GGATGATTGA
*
36002655 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
36002720 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
36002748 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
36002812 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
36002827 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36010204 original size:46 final size:46
Alignment explanation
Indices: 36010154--36010329 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
36010144 TGGTTGAGCA
36010154 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36010200 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36010245 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
36010293 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36010330 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36010310 original size:93 final size:93
Alignment explanation
Indices: 36010151--36010322 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
36010141 GGATGGTTGA
*
36010151 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
36010216 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
36010244 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
36010308 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
36010323 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36012221 original size:43 final size:42
Alignment explanation
Indices: 36012174--36012279 Score: 108
Period size: 42 Copynumber: 2.5 Consensus size: 42
36012164 GCCAACGTCT
* * *
36012174 CAGACGTGGTCTTACATGTAATCAAACATCGATGCC-ACTTTCC
1 CAGACGTGGTCTTACACGTAATCAAACA-AGATGCCGA-TGTCC
* * *
36012217 CAGACAG-GATCTTACACGAAATCAAATAAGATGCCGATGTCC
1 CAGAC-GTGGTCTTACACGTAATCAAACAAGATGCCGATGTCC
*
36012259 CAGACATGGTCTTACACGTAA
1 CAGACGTGGTCTTACACGTAA
36012280 AATAGAAGTC
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
42 27 0.53
43 23 0.45
44 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
CAGACGTGGTCTTACACGTAATCAAACAAGATGCCGATGTCC
Found at i:36012263 original size:42 final size:43
Alignment explanation
Indices: 36012162--36012325 Score: 142
Period size: 44 Copynumber: 3.8 Consensus size: 43
36012152 AACATATACA
* * * * * *
36012162 ATGCCAACGTCTCAGACGTGGTCTTACATGTAATCA-AACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAGAA-GTAG
*
36012205 ATGCC-ACTTTCCCAGACA-GGATCTTACACGAAATCA-AA-TAAG
1 ATGCCAAC-GTCCCAGACATGG-TCTTACACGAAATCAGAAGT-AG
* * *
36012247 ATGCCGATGTCCCAGACATGGTCTTACACGTAAAAT-AGAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG--AAATCAGAAGTAG
36012291 ATGCCAACGTCCCAGACATGGTCTTACACGAAATC
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATC
36012326 CTATGTCATG
Statistics
Matches: 100, Mismatches: 11, Indels: 20
0.76 0.08 0.15
Matches are distributed among these distances:
41 1 0.01
42 32 0.32
43 31 0.31
44 35 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAGAAGTAG
Found at i:36016404 original size:27 final size:27
Alignment explanation
Indices: 36016374--36016551 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36016364 ATATTGAGTC
* * * *
36016374 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36016401 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36016428 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36016456 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36016483 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36016510 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36016537 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36016552 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36016513 original size:82 final size:81
Alignment explanation
Indices: 36016395--36016550 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36016385 TGCTATATAA
* *
36016395 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36016460 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36016477 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36016541 CACTTAGTGC
65 CACTTAGTGC
36016551 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36024594 original size:27 final size:27
Alignment explanation
Indices: 36024564--36024741 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36024554 ATATTGAGTC
* * * *
36024564 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36024591 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36024618 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36024646 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36024673 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36024700 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36024727 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36024742 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36024703 original size:82 final size:81
Alignment explanation
Indices: 36024585--36024740 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36024575 TGCTATATAA
* *
36024585 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36024650 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36024667 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36024731 CACTTAGTGC
65 CACTTAGTGC
36024741 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36032494 original size:41 final size:41
Alignment explanation
Indices: 36032436--36032518 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
36032426 TTACATCTTA
*
36032436 AGGATTCATGCACGGTCAAGAGAGGAAGGATGTGACCTTTT
1 AGGATTCATGCACGGTCAAGAGAGGAAGGATATGACCTTTT
*
36032477 AGGATTCATGCATGGTCAAGAGAGGAAGGATATGACCTTTT
1 AGGATTCATGCACGGTCAAGAGAGGAAGGATATGACCTTTT
36032518 A
1 A
36032519 AACATTCTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.25
Consensus pattern (41 bp):
AGGATTCATGCACGGTCAAGAGAGGAAGGATATGACCTTTT
Found at i:36035577 original size:16 final size:16
Alignment explanation
Indices: 36035558--36035588 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36035548 CAAAAGACAA
*
36035558 AATGCCGAAAAGCCAG
1 AATGCCAAAAAGCCAG
36035574 AATGCCAAAAAGCCA
1 AATGCCAAAAAGCCA
36035589 AAAGTTTGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.26, G:0.19, T:0.06
Consensus pattern (16 bp):
AATGCCAAAAAGCCAG
Found at i:36035833 original size:28 final size:28
Alignment explanation
Indices: 36035822--36035930 Score: 114
Period size: 28 Copynumber: 3.9 Consensus size: 28
36035812 ATTTGGACCG
*
36035822 GATGGGCCATATAAATGAGATTGGGTCT
1 GATGGGCCATATAAATGAGATTGGGCCT
* *
36035850 AATGGGCCATATGAATGAGATTGGGCCT
1 GATGGGCCATATAAATGAGATTGGGCCT
* *
36035878 GATGGGCCATTTGAACATGA-ATTAGGCC-
1 GATGGGCCATAT-AA-ATGAGATTGGGCCT
* *
36035906 GAGTAGACCATATAAATGAGATTGG
1 GA-TGGGCCATATAAATGAGATTGG
36035931 ACCTAGTGGG
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
27 4 0.06
28 43 0.65
29 15 0.23
30 4 0.06
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (28 bp):
GATGGGCCATATAAATGAGATTGGGCCT
Found at i:36043505 original size:24 final size:23
Alignment explanation
Indices: 36043472--36043523 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
36043462 AGTAGATCAG
*
36043472 CAAAAGCCAAAATGCCGAAAAGC
1 CAAAAGCCAAAAAGCCGAAAAGC
*
36043495 CAAAATGCCAAAAAGCCGAAATGC
1 CAAAA-GCCAAAAAGCCGAAAAGC
36043519 CAAAA
1 CAAAA
36043524 AGCCGAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.54, C:0.25, G:0.15, T:0.06
Consensus pattern (23 bp):
CAAAAGCCAAAAAGCCGAAAAGC
Found at i:36043506 original size:8 final size:8
Alignment explanation
Indices: 36043472--36043523 Score: 63
Period size: 8 Copynumber: 6.6 Consensus size: 8
36043462 AGTAGATCAG
36043472 CAAAA-GC
1 CAAAATGC
36043479 CAAAATGC
1 CAAAATGC
36043487 CGAAAA-GC
1 C-AAAATGC
36043495 CAAAATGC
1 CAAAATGC
*
36043503 CAAAAAGC
1 CAAAATGC
*
36043511 CGAAATGC
1 CAAAATGC
36043519 CAAAA
1 CAAAA
36043524 AGCCGAAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
7 9 0.24
8 25 0.66
9 4 0.11
ACGTcount: A:0.54, C:0.25, G:0.15, T:0.06
Consensus pattern (8 bp):
CAAAATGC
Found at i:36043531 original size:16 final size:16
Alignment explanation
Indices: 36043473--36043527 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
36043463 GTAGATCAGC
*
36043473 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCA
36043489 AAAAGCCAAAATGCCA
1 AAAAGCCAAAATGCCA
*
36043505 AAAAGCCGAAATGCCA
1 AAAAGCCAAAATGCCA
36043521 AAAAGCC
1 AAAAGCC
36043528 GAAAGTTTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.53, C:0.25, G:0.16, T:0.05
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:36043824 original size:29 final size:29
Alignment explanation
Indices: 36043743--36043889 Score: 167
Period size: 29 Copynumber: 5.2 Consensus size: 29
36043733 ATGACCATGA
* *
36043743 ATAT-AATGTGATTTGGGCC-AGATGGGTC
1 ATATGAATGTGAATTGGGCCTA-ATGGGCC
* *
36043771 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
36043799 ATATGAATGTGAATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* *
36043828 ATATGAATGTAAATTGGGCCAAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * * *
36043857 ATATAAATGAG-ATTGGGCCTAGTAGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
36043885 ATATG
1 ATATG
36043890 CAGGTATGTA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
28 44 0.43
29 58 0.57
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTAATGGGCC
Found at i:36043876 original size:57 final size:57
Alignment explanation
Indices: 36043755--36043889 Score: 166
Period size: 57 Copynumber: 2.4 Consensus size: 57
36043745 ATAATGTGAT
* * * * * *
36043755 TTGGGCC-AGATGGGTCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTA-ATGGGCCATATGAATGAAATTGGGCCAAATGGGCCATATAAATGAGAA
36043812 TTGGGCCTAATGGGCCATATGAATGTAAATTGGGCCAAATGGGCCATATAAATGAG-A
1 TTGGGCCTAATGGGCCATATGAATG-AAATTGGGCCAAATGGGCCATATAAATGAGAA
* *
36043869 TTGGGCCTAGTAGGCCATATG
1 TTGGGCCTAATGGGCCATATG
36043890 CAGGTATGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
57 41 0.60
58 27 0.40
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (57 bp):
TTGGGCCTAATGGGCCATATGAATGAAATTGGGCCAAATGGGCCATATAAATGAGAA
Found at i:36052550 original size:27 final size:27
Alignment explanation
Indices: 36052516--36052741 Score: 254
Period size: 27 Copynumber: 8.3 Consensus size: 27
36052506 TTTCACTGTT
36052516 TGACTGTTTTGCCCTTATGTGGTAAAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * * *
36052543 TGATTGTTTTACCCTTATGAGGTAAGA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
*
36052570 TGACTGTTTTGCCCTTATGAGGTAAAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * *
36052597 TGATTGTTTTGCCTTTATGTGGTAAGA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * * * *
36052624 TGATTATTTTTCCCTTATATGGTAGAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * * *
36052651 TGACTATTTTTCTCTTATGTGGTAAGA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
*
36052678 TGACTGTTTTGCCCATATGTGGTAAAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * *
36052705 TGACTATTTTGCCCTTATATGGTAAGA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
36052732 TGACTAGTTT
1 TGACT-GTTT
36052742 ACCCTATTTG
Statistics
Matches: 166, Mismatches: 32, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
27 163 0.98
28 3 0.02
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (27 bp):
TGACTGTTTTGCCCTTATGTGGTAAAA
Found at i:36052655 original size:81 final size:81
Alignment explanation
Indices: 36052516--36052741 Score: 294
Period size: 81 Copynumber: 2.8 Consensus size: 81
36052506 TTTCACTGTT
*
36052516 TGACTGTTTTGCCCTTATGTGGTAAAATGATTGTTTTACCCTTATGA-GGTAAGATGACTGTTTT
1 TGACTGTTTTGCCCTTATGTGGTAAAATGATTATTTTACCCTTAT-ATGGTAAGATGACTGTTTT
36052580 GCCCTTATGAGGTAAAA
65 GCCCTTATGAGGTAAAA
* * * * *
36052597 TGATTGTTTTGCCTTTATGTGGTAAGATGATTATTTTTCCCTTATATGGT-AGAATGACTATTTT
1 TGACTGTTTTGCCCTTATGTGGTAAAATGATTATTTTACCCTTATATGGTAAG-ATGACTGTTTT
* * * *
36052661 TCTCTTATGTGGTAAGA
65 GCCCTTATGAGGTAAAA
* * *
36052678 TGACTGTTTTGCCCATATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAGATGACTAGTTT
1 TGACTGTTTTGCCCTTATGTGGTAAAATGATTATTTTACCCTTATATGGTAAGATGACT-GTTT
36052742 ACCCTATTTG
Statistics
Matches: 124, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.02
81 116 0.94
82 5 0.04
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (81 bp):
TGACTGTTTTGCCCTTATGTGGTAAAATGATTATTTTACCCTTATATGGTAAGATGACTGTTTTG
CCCTTATGAGGTAAAA
Found at i:36053092 original size:18 final size:18
Alignment explanation
Indices: 36053069--36053132 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
36053059 ACTTGTATAC
*
36053069 TGTTACTGCATTGATTAT
1 TGTTACTGCACTGATTAT
*
36053087 TGTTACTGCACTGATTAC
1 TGTTACTGCACTGATTAT
36053105 TGTTACTGCACT-ATTTAT
1 TGTTACTGCACTGA-TTAT
36053123 TGTTACTGCA
1 TGTTACTGCA
36053133 ATGGGCCAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 1 0.02
18 41 0.98
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (18 bp):
TGTTACTGCACTGATTAT
Found at i:36057465 original size:108 final size:110
Alignment explanation
Indices: 36057321--36057521 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
36057311 ATCCTTTTGA
* * *
36057321 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
36057384 -TGCCATGCTTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
36057429 AACTTATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
36057494 TGTCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
36057522 TTCAATCGGG
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:36057476 original size:55 final size:51
Alignment explanation
Indices: 36057321--36057520 Score: 188
Period size: 55 Copynumber: 3.7 Consensus size: 51
36057311 ATCCTTTTGA
*
36057321 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGT-TTGACATGGTCTTACAT-GTATCCTTGCCTTATG
* * *
36057374 AACTCACCAATGCCATGCTTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATG-TTTGACATGGTCTTACAT-GTATCC-TTGCCTTAT-G
* *
36057428 TAACTTATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGT-TTGACATGGTCTTACATG-TATCCTTGCCTTATG
* * *
36057481 AAACCTTACCAATTGTCATGCCTTGGCATGGTCTTACATG
1 -AA-CTTACCAA-TGCCATG-TTTGACATGGTCTTACATG
36057521 GTTCAATCGG
Statistics
Matches: 123, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
52 2 0.02
53 46 0.37
54 11 0.09
55 62 0.50
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (51 bp):
AACTTACCAATGCCATGTTTGACATGGTCTTACATGTATCCTTGCCTTATG
Found at i:36060072 original size:140 final size:140
Alignment explanation
Indices: 36059902--36060451 Score: 697
Period size: 140 Copynumber: 4.0 Consensus size: 140
36059892 AATATGATTA
* * * *
36059902 ATATATGAATTTTATTCATACAAAATATTAATTGTATATATTTTTCCAAATTTATTAACATAAAT
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
* *
36059967 AGTTATATTAATTAATTTTGGTCAAAATATAAAACACATGGAAATTAATATTCTTTTTGAAAGAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
36060032 TATAATTAAT
131 TATAATTAAT
* * * * *
36060042 ATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTATCGAATATATTAATATAAAT
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
* * * * ** *
36060107 AGTGATATTAATTAATTTCGGTAAAAAAATAAAAGACCTAAAAATTAATATTC-TTTTGAAAAAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
*
36060171 TATAACTAAT
131 TATAATTAAT
*
36060181 ATATATGAATTTGATTCGTACAAAATATTAATTGTATATATTTTACCAAA--T-TT-ATATAAAC
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
** * * * * * *
36060242 AGTTATACGAAATAATTTTGGTCAAAACATTAAAGATATGGAAATTAATATTCTTTTGGAAAGAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
36060307 TATAATT-A-
131 TATAATTAAT
* *
36060315 ATATATGAATTTGATTCATACAAAATATTAATTGTATATAGTTTACCGAATTTATTAATATAAAC
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
* * * *
36060380 ATTTATATTAATGAATTTCGGGCAAAATATAAAAGACAT-GAATATTAAT-TGT-GTTTTGAAAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAA-ATTAATAT-TCTTTTTG-AAA
36060442 GAATATAATT
128 GAATATAATT
36060452 CATTTTTCTA
Statistics
Matches: 350, Mismatches: 52, Indels: 18
0.83 0.12 0.04
Matches are distributed among these distances:
134 47 0.13
135 49 0.14
136 18 0.05
137 11 0.03
138 57 0.16
139 65 0.19
140 103 0.29
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (140 bp):
ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
TATAATTAAT
Found at i:36060399 original size:273 final size:278
Alignment explanation
Indices: 36059902--36060449 Score: 784
Period size: 273 Copynumber: 2.0 Consensus size: 278
36059892 AATATGATTA
* * *
36059902 ATATATGAATTTTATTCATACAAAATATTAATTGTATATATTTTTCCAAATTTATTAACATAAAT
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT-A-ATAAAC
** * * *
36059967 AGTTATATTAATTAATTTTGGTCAAAATATAAAACACATGGAAATTAATATTCTTTTTGAAAGAA
64 AGTTATACGAAATAATTTTGGTCAAAACATAAAACACATGGAAATTAATATTCTTTTGGAAAGAA
* *
36060032 TATAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTATCGAATATAT
129 TATAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATAGTTTACCGAATATAT
* * * *
36060097 TAATATAAATAGTGATATTAATTAATTTCGGTAAAAAAATAAAAGACCTAAAAATTAATAT-TCT
194 TAATATAAACAGTGATATTAATGAATTTCGGGAAAAAAATAAAAGACATAAAAATTAAT-TGTCT
36060161 TTTGAAAA-AATATAACTAAT
258 TTTGAAAAGAATATAACTAAT
*
36060181 ATATATGAATTTGATTCGTACAAAATATTAATTGTATATATTTTACCAAATTTA-T-ATAAACAG
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATAAACAG
* * *
36060244 TTATACGAAATAATTTTGGTCAAAACATTAAAGATATGGAAATTAATATTCTTTTGGAAAGAATA
66 TTATACGAAATAATTTTGGTCAAAACATAAAACACATGGAAATTAATATTCTTTTGGAAAGAATA
* *
36060309 TAATT-A-ATATATGAATTTGATTCATACAAAATATTAATTGTATATAGTTTACCGAATTTATTA
131 TAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATAGTTTACCGAATATATTA
* * * * * * *
36060372 ATATAAACATTTATATTAATGAATTTCGGGCAAAATATAAAAGACATGAATATTAATTGTGTTTT
196 ATATAAACAGTGATATTAATGAATTTCGGGAAAAAAATAAAAGACATAAAAATTAATTGTCTTTT
36060437 GAAAAGAATATAA
261 GAAAAGAATATAA
36060450 TTCATTTTTC
Statistics
Matches: 240, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
272 1 0.00
273 110 0.46
274 8 0.03
275 69 0.29
278 1 0.00
279 51 0.21
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (278 bp):
ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATAAACAG
TTATACGAAATAATTTTGGTCAAAACATAAAACACATGGAAATTAATATTCTTTTGGAAAGAATA
TAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATAGTTTACCGAATATATTA
ATATAAACAGTGATATTAATGAATTTCGGGAAAAAAATAAAAGACATAAAAATTAATTGTCTTTT
GAAAAGAATATAACTAAT
Found at i:36060518 original size:75 final size:75
Alignment explanation
Indices: 36060433--36060574 Score: 205
Period size: 75 Copynumber: 1.9 Consensus size: 75
36060423 ATTAATTGTG
* * * *
36060433 TTTTGAAAAGAATATAATTCATTTTTCTAACTTTCTATTTGTCTTCTCTATGAATAAAG-GAATA
1 TTTTGAAAAGAATATAATTCATCTTTCTAACTTTCCATTTGCCTTCTATATGAAT-AAGTGAATA
36060497 ATCCTATATTC
65 ATCCTATATTC
* * *
36060508 TTTTGGAAAGAATATAATTCCTCTTTCTAACTTTCCATTTGCCTTCTATATTAATAAGTGAATAA
1 TTTTGAAAAGAATATAATTCATCTTTCTAACTTTCCATTTGCCTTCTATATGAATAAGTGAATAA
36060573 TC
66 TC
36060575 TTAGTTTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 3 0.05
75 56 0.95
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.44
Consensus pattern (75 bp):
TTTTGAAAAGAATATAATTCATCTTTCTAACTTTCCATTTGCCTTCTATATGAATAAGTGAATAA
TCCTATATTC
Found at i:36071074 original size:47 final size:47
Alignment explanation
Indices: 36071020--36071487 Score: 677
Period size: 47 Copynumber: 10.0 Consensus size: 47
36071010 TTAGGATTTT
** * *
36071020 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36071067 ATGTGATGAATATGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36071114 ATGTGATGAATGTGAACATGCGTATGTGTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36071161 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCTGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36071208 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36071255 ATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36071302 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36071349 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36071396 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
36071443 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGC
36071488 TAATACGAAA
Statistics
Matches: 385, Mismatches: 35, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
47 382 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36071305 original size:24 final size:24
Alignment explanation
Indices: 36071278--36071353 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
36071268 GAACATGCAT
36071278 ATGTGTGATAAGGCCGAATGACCA
1 ATGTGTGATAAGGCCGAATGACCA
* * **
36071302 ATGTGATGA-ATGTG--AACATG-CGT
1 ATGTG-TGATAAG-GCCGA-ATGACCA
36071325 ATGTGTGATAAGGCCGAATGACCA
1 ATGTGTGATAAGGCCGAATGACCA
36071349 ATGTG
1 ATGTG
36071354 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGACCA
Found at i:36071557 original size:45 final size:46
Alignment explanation
Indices: 36071466--36071601 Score: 193
Period size: 45 Copynumber: 3.0 Consensus size: 46
36071456 GGAAGTGTAT
*
36071466 ATATGTGGTAAAGCCGAATGGCTAATACGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
36071512 ATATGAGGTAAAGCCGAATGG-TAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
36071557 ATATGTGGTAAAGTCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
36071602 TGTATATATA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 40 0.51
46 39 0.49
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:36073152 original size:40 final size:40
Alignment explanation
Indices: 36073100--36073375 Score: 408
Period size: 40 Copynumber: 6.9 Consensus size: 40
36073090 GTTATATATG
*
36073100 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
** *
36073140 ATCCGGGCTAAGTCCCGAAGAGCATAGGGGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
36073180 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
36073220 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
36073260 ATCCGGGCTAAGTCTCGAAGAGCATTCATGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * * *
36073300 ATCAGGGTTAAGTCCTGAAGAGCATTCGTACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
36073340 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
36073376 ATGTGTATTC
Statistics
Matches: 214, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:36077567 original size:24 final size:24
Alignment explanation
Indices: 36077499--36077568 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
36077489 GCATATATGA
36077499 GATAAGGCCGAATGGCCAA--TGT
1 GATAAGGCCGAATGGCCAATGTGT
*
36077521 GATGAAGG-TGAACAT-G-CATATGTGT
1 GAT-AAGGCCG-A-ATGGCCA-ATGTGT
36077546 GATAAGGCCGAATGGCCAATGTG
1 GATAAGGCCGAATGGCCAATGTG
36077569 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
22 6 0.16
23 9 0.24
24 13 0.35
25 9 0.24
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.21
Consensus pattern (24 bp):
GATAAGGCCGAATGGCCAATGTGT
Found at i:36077711 original size:22 final size:22
Alignment explanation
Indices: 36077636--36077711 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
36077626 ACATGCATAT
*
36077636 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
36077658 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
36077682 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
36077705 ATGTGAT
1 ATGTGAT
36077712 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:36077749 original size:47 final size:47
Alignment explanation
Indices: 36077329--36077714 Score: 619
Period size: 47 Copynumber: 8.2 Consensus size: 47
36077319 TTAGGATTTT
* ** * *
36077329 ATGTGATGAATGCGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36077376 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
36077423 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36077470 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36077517 ATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36077564 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36077611 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36077658 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36077705 ATGTGATGAA
1 ATGTGATGAA
36077715 CGTGGAAGTG
Statistics
Matches: 314, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 314 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36077791 original size:46 final size:46
Alignment explanation
Indices: 36077734--36077864 Score: 190
Period size: 46 Copynumber: 2.8 Consensus size: 46
36077724 GTATATATAT
*
36077734 GGTAAATCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
* *
36077780 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGT
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
* * * * *
36077826 GGTAGAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
36077865 TGTATATATA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
Found at i:36084576 original size:15 final size:15
Alignment explanation
Indices: 36084553--36084586 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36084543 CAGGATGAAG
*
36084553 TGATTTTGTAAGGCA
1 TGATGTTGTAAGGCA
*
36084568 TGATGTTGTAATGCA
1 TGATGTTGTAAGGCA
36084583 TGAT
1 TGAT
36084587 AGATGATGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.41
Consensus pattern (15 bp):
TGATGTTGTAAGGCA
Found at i:36085580 original size:17 final size:17
Alignment explanation
Indices: 36085554--36085586 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36085544 CACAAGGACA
36085554 AAGGCAAAGGAAAAGCT
1 AAGGCAAAGGAAAAGCT
*
36085571 AAGGCTAAGGAAAAGC
1 AAGGCAAAGGAAAAGC
36085587 CTATGGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.30, T:0.06
Consensus pattern (17 bp):
AAGGCAAAGGAAAAGCT
Found at i:36103187 original size:37 final size:37
Alignment explanation
Indices: 36103126--36103204 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36103116 TTATTACGAA
* * *
36103126 GTCTTACCCGAACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
* *
36103163 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
36103200 GTCTT
1 GTCTT
36103205 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
Found at i:36103401 original size:47 final size:47
Alignment explanation
Indices: 36103323--36103686 Score: 586
Period size: 47 Copynumber: 7.7 Consensus size: 47
36103313 CCCTTCGGGA
* * * * * *
36103323 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36103370 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36103417 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36103464 CTTATCACATATATACACTTTCACCTTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36103511 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36103558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36103605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36103652 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36103687 AGAATCCCAA
Statistics
Matches: 299, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 298 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36107771 original size:46 final size:45
Alignment explanation
Indices: 36107721--36107893 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
36107711 TGGTTGAGCA
36107721 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
36107767 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
36107812 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAATG
* * * *
36107860 CCCGAGCTCGTTGAGTTTATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36107894 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 29 0.28
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:36107884 original size:93 final size:93
Alignment explanation
Indices: 36107718--36107888 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
36107708 GGATGGTTGA
* * *
36107718 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
36107783 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
36107811 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
* *
36107876 TTATTCCGAGTTC
66 TGAGTCCGAGTTC
36107889 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:36112294 original size:26 final size:26
Alignment explanation
Indices: 36112258--36112331 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
36112248 ATCAAAGTCG
36112258 GTCA-TTTACCCTCAAGGGTAAAACA
1 GTCATTTTACCCTCAAGGGTAAAACA
*** *
36112283 GTCATTTTACCCT-ATAGGGGTATGTCT
1 GTCATTTTACCCTCA-A-GGGTAAAACA
36112310 GTCATTTTACCCTACAAGGGTA
1 GTCATTTTACCCT-CAAGGGTA
36112332 TTTCGATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
25 5 0.12
26 9 0.22
27 24 0.60
28 1 0.03
29 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (26 bp):
GTCATTTTACCCTCAAGGGTAAAACA
Found at i:36112343 original size:27 final size:27
Alignment explanation
Indices: 36112286--36112373 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
36112276 TAAAACAGTC
* * * *
36112286 ATTTTACCCTATAGGGGTATGTCTG-TC
1 ATTTTACCCTACAAGGGTATTTC-GATA
36112313 ATTTTACCCTACAAGGGTATTTCGATA
1 ATTTTACCCTACAAGGGTATTTCGATA
*
36112340 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACCCTACAAGGGTATTTCGATA
36112367 ATTTTAC
1 ATTTTAC
36112374 AAATTGAGGG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGTATTTCGATA
Found at i:36112374 original size:27 final size:27
Alignment explanation
Indices: 36112326--36112799 Score: 571
Period size: 27 Copynumber: 17.7 Consensus size: 27
36112316 TTACCCTACA
* * *
36112326 AGGGTATTTCGATAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* *
36112353 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
36112380 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
36112407 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
36112434 AGGGTATTTTGATAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
36112461 AGGGTATTTCGATAATTTTCCAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
36112488 AGGGTGTTTCGGTAATTTTCCAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
36112515 AGGGTGTTTCGGTAATTTTCCAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
36112542 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * * *
36112569 AGGGTATTTCAATAATTTCAC-CATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
*
36112595 AGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
*
36112622 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
36112649 AGGGTATTTCAGTAATTTCAC-AATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
36112675 AAGGTATTTCGGTAATTTTACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
36112701 AGGGGTATTTCGGTAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
** * *
36112729 AGGGTATTTTAGTAATGTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
36112755 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
36112782 AGAGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
36112800 CTCTTTATTA
Statistics
Matches: 391, Mismatches: 50, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
26 66 0.17
27 322 0.82
28 3 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:36112628 original size:80 final size:80
Alignment explanation
Indices: 36112326--36112799 Score: 569
Period size: 80 Copynumber: 5.9 Consensus size: 80
36112316 TTACCCTACA
* * * *
36112326 AGGGTATTTC-GATAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTC
1 AGGGTATTTCAG-TAATTTCACAAT-CAAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTC
36112390 GGTAATTTTACAAATCG
64 GGTAATTTTACAAATCG
* * ** * * * *
36112407 AGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTATAAATCGAGGGTATTTCG
1 AGGGTATTTCAGTAATTTCAC-AATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCG
* *
36112472 ATAATTTTCCAAATCG
65 GTAATTTTACAAATCG
* * * * *
36112488 AGGGTGTTTCGGTAATTTTC-CAAATCGAGGGTGTTTCGGTAATTTTCCAAATCGAGGGTGTTTC
1 AGGGTATTTCAGTAA-TTTCAC-AATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTC
*
36112552 GATAATTTTACAAATCG
64 GGTAATTTTACAAATCG
* * *
36112569 AGGGTATTTCAATAATTTCACCATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCGG
1 AGGGTATTTCAGTAATTTCACAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
36112634 TAATTTTACAAATCG
66 TAATTTTACAAATCG
* * *
36112649 AGGGTATTTCAGTAATTTCACAATTGAA-GGTATTTCGGTAATTTTACAAAT-TAGGGGTATTTC
1 AGGGTATTTCAGTAATTTCACAA-TCAAGGGTATTTCGGTAATTTTACAAATCGA-GGGTGTTTC
36112712 GGTAATTTTACAAATCG
64 GGTAATTTTACAAATCG
* * * * * *
36112729 AGGGTATTTTAGTAATGTCACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTCAG
1 AGGGTATTTCAGTAATTTCACAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
36112794 TAATTT
66 TAATTT
36112800 CTCTTTATTA
Statistics
Matches: 345, Mismatches: 40, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.01
80 185 0.54
81 151 0.44
82 6 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTCACAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
TAATTTTACAAATCG
Found at i:36113170 original size:28 final size:28
Alignment explanation
Indices: 36113139--36113204 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
36113129 TTCGCATAGT
36113139 CCATTAGGCCCAATCACATTCATATGAC
1 CCATTAGGCCCAATCACATTCATATGAC
* *
36113167 CCATCAGGCCCAATCACATTCATATGGC
1 CCATTAGGCCCAATCACATTCATATGAC
36113195 CCATTAGGCC
1 CCATTAGGCC
36113205 AAACTACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.23
Consensus pattern (28 bp):
CCATTAGGCCCAATCACATTCATATGAC
Found at i:36116173 original size:40 final size:40
Alignment explanation
Indices: 36116068--36116211 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 40
36116058 GCTACTCGTT
*
36116068 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36116108 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
36116148 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36116189 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
36116212 ACATCATTCA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 75 0.82
41 13 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36124110 original size:40 final size:39
Alignment explanation
Indices: 36124080--36124264 Score: 230
Period size: 40 Copynumber: 4.7 Consensus size: 39
36124070 GCTACTCGTT
* * *
36124080 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCA
36124120 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGCA
36124160 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
** * * *
36124199 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TAGTAAC-TCGCA
*
36124240 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36124265 CATCATTCAA
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 3 0.02
39 34 0.26
40 82 0.63
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
Found at i:36124203 original size:79 final size:81
Alignment explanation
Indices: 36124080--36124264 Score: 252
Period size: 79 Copynumber: 2.3 Consensus size: 81
36124070 GCTACTCGTT
* *
36124080 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
36124144 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
36124160 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
36124224 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
36124240 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36124265 CATCATTCAA
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.03
79 58 0.62
80 32 0.34
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:36127912 original size:27 final size:27
Alignment explanation
Indices: 36127868--36127956 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
36127858 CAAAATAGTC
* * * * *
36127868 ATTTTACCCTATAGGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATGTCGATA
* *
36127895 ATGTTT-CACTACAAGGGTATTTTGATA
1 AT-TTTACACTACAAGGGTATGTCGATA
*
36127922 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATGTCGATA
36127949 ATTTTACA
1 ATTTTACA
36127957 AAACGGGGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
26 3 0.06
27 46 0.88
28 3 0.06
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATGTCGATA
Found at i:36127966 original size:27 final size:27
Alignment explanation
Indices: 36127908--36128273 Score: 332
Period size: 27 Copynumber: 13.7 Consensus size: 27
36127898 TTTCACTACA
* * *
36127908 AGGGTATTTTGATAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
36127935 AGGGTATTTCGATAATTTTACAAAACG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
36127962 GGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
36127989 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
36128016 A-GGTGTTCCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
36128042 AGGTTGTTTCGGTAATTCTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
36128069 AGGGTATTTC-ACTAATTTAAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
36128095 TGGGTATTTCGATAATTTTACATATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * * **
36128122 AGGGTTTTTCGGTAATTTTGCAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
36128149 AGGGTGTTTTGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
36128176 AGGGTATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
36128202 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
36128229 GGGGTATTTTGGTAACTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
36128256 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
36128274 CCCTTTAATA
Statistics
Matches: 275, Mismatches: 55, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
26 66 0.24
27 208 0.76
28 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:36128052 original size:107 final size:107
Alignment explanation
Indices: 36127934--36128233 Score: 359
Period size: 107 Copynumber: 2.8 Consensus size: 107
36127924 TTTACACTAC
* * * * * * *
36127934 AAGGGTATTTCGATAATTTTACAAAACGGGGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTT
1 AAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTAAC-AATCGAGGGTATTTC
36127999 GATAATTTTACAAATCGA-GGTGTTCCGATAATTTTACAAATT
65 GATAATTTTACAAATCGAGGGTGTTCCGATAATTTTACAAATT
* * * * * * *
36128041 GAGGTTGTTTCGGTAATTCTACAAATCGAGGGTATTTCACTAATTTAACAATCGTGGGTATTTCG
1 AAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTAACAATCGAGGGTATTTCG
* * * * * *
36128106 ATAATTTTACATATCAAGGGTTTTTCGGTAATTTTGCAAATT
66 ATAATTTTACAAATCGAGGGTGTTCCGATAATTTTACAAATT
* * *
36128148 AAGGGTGTTTTGATAATTTTACAAATTGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCG
1 AAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTAACAATCGAGGGTATTTCG
* *
36128213 GTAATTTTACAAATCGGGGGT
66 ATAATTTTACAAATCGAGGGT
36128234 ATTTTGGTAA
Statistics
Matches: 158, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
106 29 0.18
107 129 0.82
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (107 bp):
AAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTAACAATCGAGGGTATTTCG
ATAATTTTACAAATCGAGGGTGTTCCGATAATTTTACAAATT
Found at i:36128260 original size:107 final size:106
Alignment explanation
Indices: 36127909--36128273 Score: 358
Period size: 107 Copynumber: 3.4 Consensus size: 106
36127899 TTCACTACAA
* * * * * *
36127909 GGGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAAACGGGGGTGTTTTG
1 GGGTATTTTGATAATTTTACAAAT-CAAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
* *
36127973 GTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
65 GTAATTTAAC-AATCGAGGGTATTTCGATAATTTTACAAATCG
* * ** ** * * * * *
36128016 AGGTGTTCCGATAATTTTACAAATTGAGGTTGTTTCGGTAATTCTACAAATCGAGGGTATTTCAC
1 GGGTATTTTGATAATTTTACAAATCAAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTAG
* * *
36128081 TAATTTAACAATCGTGGGTATTTCGATAATTTTACATATCAA
66 TAATTTAACAATCGAGGGTATTTCGATAATTTTACAAATC-G
* * * * *
36128123 GGGT-TTTTCGGTAATTTTGCAAATTAAGGGTGTTTTGATAATTTTACAAATTGAGGGTATTTTA
1 GGGTATTTT-GATAATTTTACAAATCAAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
* *
36128187 GTAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCGG
65 GTAATTTAACAATCGAGGGTATTTCGATAATTTTACAAATC-G
* * * *
36128230 GGGTATTTTGGTAACTTTACAAATCGAGGGTATTTC-AGTAATTT
1 GGGTATTTTGATAATTTTACAAATCAAGGGTGTTTCGA-TAATTT
36128274 CCCTTTAATA
Statistics
Matches: 206, Mismatches: 47, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
106 31 0.15
107 169 0.82
108 6 0.03
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (106 bp):
GGGTATTTTGATAATTTTACAAATCAAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTAG
TAATTTAACAATCGAGGGTATTTCGATAATTTTACAAATCG
Found at i:36128274 original size:80 final size:81
Alignment explanation
Indices: 36127908--36128273 Score: 404
Period size: 80 Copynumber: 4.6 Consensus size: 81
36127898 TTTCACTACA
* * * * *
36127908 AGGGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAAACGGGGGTGTTTT
1 AGGGTATTTTGATAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTC
36127972 GGTAATTTTACAAATCG
65 GGTAATTTTACAAATCG
* * * *
36127989 AGGGTATTTTGATAATTTTACAAATCGA-GGTGTTCCGATAATTTTACAAATTGAGGTTGTTTCG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCG
*
36128053 GTAATTCTACAAATCG
66 GTAATTTTACAAATCG
* * * * * *
36128069 AGGGTA-TTTCACTAATTTAAC-AATCGTGGGTATTTCGATAATTTTACATATCAAGGGTTTTTC
1 AGGGTATTTTGA-TAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTC
* **
36128132 GGTAATTTTGCAAATTA
65 GGTAATTTTACAAATCG
* * * * *
36128149 AGGGTGTTTTGATAATTTTACAAATTGAGGGTATTT-TAGTAATTTCAC-AATCGAGGGTATTTC
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCGAGGGTGTTTC
36128212 GGTAATTTTACAAATCG
65 GGTAATTTTACAAATCG
* * *
36128229 GGGGTATTTTGGTAACTTTACAAATCGAGGGTATTTC-AGTAATTT
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGA-TAATTT
36128274 CCCTTTAATA
Statistics
Matches: 236, Mismatches: 42, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
79 9 0.04
80 178 0.75
81 47 0.20
82 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCG
GTAATTTTACAAATCG
Found at i:36128626 original size:28 final size:28
Alignment explanation
Indices: 36128593--36128681 Score: 97
Period size: 28 Copynumber: 3.2 Consensus size: 28
36128583 CCCCTTTAGG
* * *
36128593 CCCAATCTCGTTCGCATGGCCCATCAGA
1 CCCAATCACATTCACATGGCCCATCAGA
* *
36128621 CCCAATCACATTCATATGGCCCATCAGG
1 CCCAATCACATTCACATGGCCCATCAGA
* ** *
36128649 CCCAATCACATTCATATCACCCATCAAA
1 CCCAATCACATTCACATGGCCCATCAGA
36128677 CCCAA
1 CCCAA
36128682 GTACTTACCA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.30, C:0.39, G:0.10, T:0.20
Consensus pattern (28 bp):
CCCAATCACATTCACATGGCCCATCAGA
Found at i:36131535 original size:27 final size:27
Alignment explanation
Indices: 36131485--36131577 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
36131475 AGGGCAAAAT
* * *
36131485 AGTCATTTTACCCTATAAAAGTATGTC
1 AGTCATTTTACACTACAAAGGTATGTC
* * *
36131512 GGTCATTTTACACTACAAGGGTATTTC
1 AGTCATTTTACACTACAAAGGTATGTC
* * *
36131539 AGTAATTTTACACTACAATGGTATTTC
1 AGTCATTTTACACTACAAAGGTATGTC
* *
36131566 AATAATTTTACA
1 AGTCATTTTACA
36131578 AATCAGGGGT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACACTACAAAGGTATGTC
Found at i:36131592 original size:27 final size:28
Alignment explanation
Indices: 36131529--36132000 Score: 359
Period size: 27 Copynumber: 17.6 Consensus size: 28
36131519 TTACACTACA
*
36131529 AGGGTATTTCAGTAATTTTAC-ACTACA-
1 AGGGTATTTCAGTAATTTTACAAAT-CAG
* *
36131556 ATGGTATTTCAATAATTTTACAAATCAG
1 AGGGTATTTCAGTAATTTTACAAATCAG
* * *
36131584 -GGGTGTTTCGGTAATTTTACAAAT-TG
1 AGGGTATTTCAGTAATTTTACAAATCAG
* ** *
36131610 AGGGTGTTTTGGTAATTTCACAAATC-G
1 AGGGTATTTCAGTAATTTTACAAATCAG
* * **
36131637 AGGTTGTTTTGGTAATTTTACAAATC-G
1 AGGGTATTTCAGTAATTTTACAAATCAG
* *
36131664 AGGGT-GTTCCGATAATTTTACAAATC-G
1 AGGGTATTTCAG-TAATTTTACAAATCAG
* *
36131691 AGGGCATTTC-GATAATTTTACAAAT-TG
1 AGGGTATTTCAG-TAATTTTACAAATCAG
* *
36131718 AGGGTATTTCAGTAATTTCAC-AAT-TG
1 AGGGTATTTCAGTAATTTTACAAATCAG
* *
36131744 AGGGTATTTCAATAA-TTTAGAAATCA-
1 AGGGTATTTCAGTAATTTTACAAATCAG
* **
36131770 AGGGTGTTTCAAAAATTTTACAAATC-G
1 AGGGTATTTCAGTAATTTTACAAATCAG
* *
36131797 AGGGTGTTTCGGTAA-TTTACAAATC-G
1 AGGGTATTTCAGTAATTTTACAAATCAG
* *
36131823 AGGGGT-TTTTAGTAATTTCAC-AATC-G
1 A-GGGTATTTCAGTAATTTTACAAATCAG
* * * *
36131849 ATGGTATTTTAGTAATTTTAAAAATTA-
1 AGGGTATTTCAGTAATTTTACAAATCAG
*
36131876 AGGGTATTTCAGTAATTTGACAAATC-G
1 AGGGTATTTCAGTAATTTTACAAATCAG
*
36131903 AGGGTATTTTAGTAATTTTA-AAATCA-
1 AGGGTATTTCAGTAATTTTACAAATCAG
*
36131929 AGGGTATTTC-GATAATTTTATAAATCA-
1 AGGGTATTTCAG-TAATTTTACAAATCAG
* *
36131956 AAGGTATTTCGGTAATTTTACAAATCA-
1 AGGGTATTTCAGTAATTTTACAAATCAG
*
36131983 AGGTTATTTCAGTAATTT
1 AGGGTATTTCAGTAATTT
36132001 CTCTTTATTA
Statistics
Matches: 373, Mismatches: 50, Indels: 44
0.80 0.11 0.09
Matches are distributed among these distances:
25 7 0.02
26 99 0.27
27 260 0.70
28 7 0.02
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (28 bp):
AGGGTATTTCAGTAATTTTACAAATCAG
Found at i:36131800 original size:53 final size:54
Alignment explanation
Indices: 36131529--36132000 Score: 404
Period size: 54 Copynumber: 8.8 Consensus size: 54
36131519 TTACACTACA
* *
36131529 AGGGTATTTCAGTAATTTTAC-ACTACAATGGTATTTCAATAATTTTACAAATC-
1 AGGGTATTTCAGTAATTTTACAAAT-CAAGGGTATTTCAATAATTTTACAAATCG
* * ** * *** *
36131582 AGGGGTGTTTCGGTAATTTTACAAATTGAGGGTGTTTTGGTAATTTCACAAATCG
1 A-GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCG
* * ** * * * *
36131637 AGGTTGTTTTGGTAATTTTACAAATCGAGGGTGTTCCGATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCG
* ** * * *
36131691 AGGGCATTTC-GATAATTTTACAAATTGAGGGTATTTCAGTAATTTCAC-AATTG
1 AGGGTATTTCAG-TAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCG
* * * *
36131744 AGGGTATTTCAATAA-TTTAGAAATCAAGGGTGTTTCAAAAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCG
* * * * * *
36131797 AGGGTGTTTCGGTAA-TTTACAAATCGAGGGGT-TTTTAGTAATTTCAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATC-AAGGGTATTTCAATAATTTTACAAATCG
* * * * * *
36131849 ATGGTATTTTAGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTGACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCG
* * * *
36131903 AGGGTATTTTAGTAATTTTA-AAATCAAGGGTATTTCGATAATTTTATAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCG
* * * *
36131956 AAGGTATTTCGGTAATTTTACAAATCAAGGTTATTTCAGTAATTT
1 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTT
36132001 CTCTTTATTA
Statistics
Matches: 338, Mismatches: 70, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
52 46 0.14
53 119 0.35
54 170 0.50
55 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCG
Found at i:36137132 original size:20 final size:20
Alignment explanation
Indices: 36137107--36137147 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36137097 TCTACATATT
36137107 CATCTATGACTAATTCCCAA
1 CATCTATGACTAATTCCCAA
36137127 CATCTATGACTAATTCCCAA
1 CATCTATGACTAATTCCCAA
36137147 C
1 C
36137148 CTTTAAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29
Consensus pattern (20 bp):
CATCTATGACTAATTCCCAA
Found at i:36139232 original size:141 final size:140
Alignment explanation
Indices: 36138831--36139252 Score: 716
Period size: 135 Copynumber: 3.1 Consensus size: 140
36138821 AAGAACATAG
36138831 ATATAATT--AATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
1 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
*
36138894 TTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACAT-G--A--AATATTCT
66 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
36138954 TTTGGAAAGA
131 TTTGGAAAGA
36138964 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
1 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
*
36139029 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGAAAATTAATATTCT
66 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
36139094 TTTGGAAAGA
131 TTTGGAAAGA
* *
36139104 ATATAATTAAAATATATGAATTTGATTCATACAAAATATT-AGTTGTATATATTTTTATCAAATT
1 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGA-TTGTATATA-TTTTACCGAATT
* *
36139168 TATTAATATAAATAGTTATATTAATTAATTTTGGTTAAAATATAAAAGACATGGAAATTAATATT
64 TATTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATT
36139233 CTTTTGGAAAGA
129 CTTTTGGAAAGA
36139245 ATATAATT
1 ATATAATT
36139253 CCTTTTTCTA
Statistics
Matches: 273, Mismatches: 7, Indels: 10
0.94 0.02 0.03
Matches are distributed among these distances:
133 8 0.03
135 104 0.38
138 1 0.00
139 1 0.00
140 67 0.25
141 92 0.34
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (140 bp):
ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
TTTGGAAAGA
Found at i:36139351 original size:75 final size:75
Alignment explanation
Indices: 36139228--36139377 Score: 228
Period size: 75 Copynumber: 2.0 Consensus size: 75
36139218 ATGGAAATTA
* * * *
36139228 ATATTCTTTTGGAAAGAATATAATTCCTTTTTCTAACTTTTCATTTGCCTTCTCTATTAATAATG
1 ATATTCTTTTGAAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
36139293 CAATAATCCT
66 CAATAATCCT
* * *
36139303 ATATTTTTTTGAAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTTTCTGTTAATAAGG
1 ATATTCTTTTGAAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
*
36139368 GAATAATCCT
66 CAATAATCCT
36139378 GGTTTTTCTT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47
Consensus pattern (75 bp):
ATATTCTTTTGAAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
CAATAATCCT
Found at i:36142420 original size:24 final size:24
Alignment explanation
Indices: 36142393--36142440 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36142383 TGGTGAATAT
*
36142393 ATATATG-AGGTTATGGTATGGTTA
1 ATATATGTAGGTT-TGATATGGTTA
*
36142417 ATATATGTATGTTTGATATGGTTA
1 ATATATGTAGGTTTGATATGGTTA
36142441 GATTGAAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (24 bp):
ATATATGTAGGTTTGATATGGTTA
Found at i:36143639 original size:15 final size:13
Alignment explanation
Indices: 36143601--36143631 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
36143591 AGGGGACACA
36143601 TGACCGTGTCACC
1 TGACCGTGTCACC
36143614 TGACCGTGTCACC
1 TGACCGTGTCACC
36143627 TGACC
1 TGACC
36143632 ATGTGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.39, G:0.23, T:0.23
Consensus pattern (13 bp):
TGACCGTGTCACC
Found at i:36144534 original size:26 final size:26
Alignment explanation
Indices: 36144505--36144556 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
36144495 AATATACCCG
36144505 TTGAAACATTTGGAATAATATTGGAT
1 TTGAAACATTTGGAATAATATTGGAT
*
36144531 TTGAACCATTTGGAATAATATTGGAT
1 TTGAAACATTTGGAATAATATTGGAT
36144557 ACTTGAGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (26 bp):
TTGAAACATTTGGAATAATATTGGAT
Found at i:36151544 original size:39 final size:39
Alignment explanation
Indices: 36151494--36151575 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
36151484 AACTTAATGT
*
36151494 CTAGCAGGCCTCGT-CCTGGTGATAAATTTAGGTTTATAC
1 CTAGCAGGCCTCGTGCC-GGTGATAAATTCAGGTTTATAC
*
36151533 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
36151572 CTAG
1 CTAG
36151576 TAGAGTAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 38 0.95
40 2 0.05
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:36159711 original size:39 final size:39
Alignment explanation
Indices: 36159661--36159747 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
36159651 AACTTAATGT
36159661 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
*
36159700 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
36159739 CTAGCAGGC
1 CTAGCAGGC
36159748 TAATTCCCGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:36159758 original size:39 final size:39
Alignment explanation
Indices: 36159661--36159760 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
36159651 AACTTAATGT
* *
36159661 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTAGTCCCGGTGATAAATTCAGGTTTATAC
* * *
36159700 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTCCCGGTGATAAATTCAGGTTTATAC
*
36159739 CTAGCAGG-CTAATTCCCGGTGA
1 CTAGCAGGCCT-AGTCCCGGTGA
36159761 GATAATAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
38 2 0.04
39 54 0.96
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
CTAGCAGGCCTAGTCCCGGTGATAAATTCAGGTTTATAC
Found at i:36161006 original size:10 final size:10
Alignment explanation
Indices: 36160991--36161033 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
36160981 CAATTTACCA
36160991 ACCAAATCAT
1 ACCAAATCAT
*
36161001 ACCAAATCTAA
1 ACCAAATC-AT
36161012 ACCAAAATCAT
1 ACC-AAATCAT
*
36161023 ACCAAAGCAT
1 ACCAAATCAT
36161033 A
1 A
36161034 TATTTCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:36161856 original size:42 final size:44
Alignment explanation
Indices: 36161809--36161903 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
36161799 TCCTAGGCAG
* * *
36161809 GGTCTTACAC-AAAATCA-AA-TACAATGCTAATGTCCTAGTTGT
1 GGTCTTACACGAAAATCATAAGT-CAATGCCAACGTCCTAGATGT
*
36161851 GGTCTTACACGTAAATCATAAGTCAATGCCAACGTCCTAGATGT
1 GGTCTTACACGAAAATCATAAGTCAATGCCAACGTCCTAGATGT
36161895 GGTCTTACA
1 GGTCTTACA
36161904 TGATAACACA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 10 0.22
43 6 0.13
44 29 0.63
45 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (44 bp):
GGTCTTACACGAAAATCATAAGTCAATGCCAACGTCCTAGATGT
Found at i:36169312 original size:42 final size:42
Alignment explanation
Indices: 36169208--36169334 Score: 123
Period size: 43 Copynumber: 3.0 Consensus size: 42
36169198 CGAAAAGCTC
* * * * * *
36169208 ATACAATGCGAACGTCCCAGACATGGTCTTACATGTAGTCAA
1 ATACAATGCCAACGTCCCAAACAGGGTCTTACACGAAATCAA
*
36169250 ATATCGATGCC-ACTGTCCCAAACAGGGTCTTACACGAAATCAA
1 ATA-CAATGCCAAC-GTCCCAAACAGGGTCTTACACGAAATCAA
* *
36169293 TTACAATGCCAACGTCCCAAAC-GTTGTCTTACACGTAAATCA
1 ATACAATGCCAACGTCCCAAACAG-GGTCTTACACG-AAATCA
36169335 TAAGTTGATG
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.01
42 30 0.43
43 39 0.56
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
ATACAATGCCAACGTCCCAAACAGGGTCTTACACGAAATCAA
Found at i:36176627 original size:20 final size:22
Alignment explanation
Indices: 36176602--36176649 Score: 82
Period size: 20 Copynumber: 2.3 Consensus size: 22
36176592 CTTTAGACCA
36176602 TATTTAGACA-ATTTTTTTTT-
1 TATTTAGACAGATTTTTTTTTG
36176622 TATTTAGACAGATTTTTTTTTG
1 TATTTAGACAGATTTTTTTTTG
36176644 TATTTA
1 TATTTA
36176650 TTTATGACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 10 0.38
21 10 0.38
22 6 0.23
ACGTcount: A:0.25, C:0.04, G:0.08, T:0.62
Consensus pattern (22 bp):
TATTTAGACAGATTTTTTTTTG
Found at i:36176641 original size:22 final size:20
Alignment explanation
Indices: 36176602--36176649 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
36176592 CTTTAGACCA
*
36176602 TATTTAGACAATTTTTTTTT
1 TATTTAGACAATTTTTTTTG
36176622 TATTTAGACAGATTTTTTTTTG
1 TATTTAGACA-A-TTTTTTTTG
36176644 TATTTA
1 TATTTA
36176650 TTTATGACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.40
21 1 0.04
22 14 0.56
ACGTcount: A:0.25, C:0.04, G:0.08, T:0.62
Consensus pattern (20 bp):
TATTTAGACAATTTTTTTTG
Found at i:36190653 original size:27 final size:28
Alignment explanation
Indices: 36190615--36190675 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
36190605 GTACCTAGAC
36190615 CCCCTA-ATTGATAAAATGACTAAAATG
1 CCCCTATATTGATAAAATGACTAAAATG
**
36190642 CCCCTATA-TGATAAAATGACTATTATG
1 CCCCTATATTGATAAAATGACTAAAATG
36190669 CCCCTAT
1 CCCCTAT
36190676 GAGATGTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (28 bp):
CCCCTATATTGATAAAATGACTAAAATG
Found at i:36196476 original size:25 final size:25
Alignment explanation
Indices: 36196448--36196499 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
36196438 ATACTGGATC
36196448 GTGATGTAAAGGTTTTAAGGAAAAA
1 GTGATGTAAAGGTTTTAAGGAAAAA
36196473 GTGATGTAAAGGTTTTAAGGAAAAA
1 GTGATGTAAAGGTTTTAAGGAAAAA
36196498 GT
1 GT
36196500 CTATCCCACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (25 bp):
GTGATGTAAAGGTTTTAAGGAAAAA
Found at i:36201297 original size:17 final size:17
Alignment explanation
Indices: 36201275--36201316 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
36201265 ATTTTCATAC
36201275 GAGCTTACTAAGCTTTA
1 GAGCTTACTAAGCTTTA
36201292 GAGCTTACTAAGCTTTA
1 GAGCTTACTAAGCTTTA
*
36201309 TAGCTTAC
1 GAGCTTAC
36201317 ATTATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (17 bp):
GAGCTTACTAAGCTTTA
Found at i:36209254 original size:42 final size:44
Alignment explanation
Indices: 36209151--36209303 Score: 132
Period size: 43 Copynumber: 3.5 Consensus size: 44
36209141 TGTTATCGTG
** * * * * *
36209151 TAAGACCACATCTGGGACGTTGGCATCGATTTGTGATTTATGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTACGTA
36209195 TAAGACCATGTCTGGGACATTGGCATCG-TATATGATTT-CGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTACGTA
* * * * * * *
36209237 TAAGACCCTGTCTGGGACAGTGGCTTCAATATTTGA-TTACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTACGTA
* * *
36209280 TAAGACCACGTTTGGGACGTTGGC
1 TAAGACCATGTCTGGGACATTGGC
36209304 GTTGTATGAG
Statistics
Matches: 88, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
42 28 0.32
43 35 0.40
44 25 0.28
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTACGTA
Found at i:36212212 original size:21 final size:21
Alignment explanation
Indices: 36212188--36212244 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
36212178 CCCTTGAAAC
36212188 AGGGCACACAC-CCCGTATGGA
1 AGGGCA-ACACGCCCGTATGGA
*
36212209 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTATGGA
*
36212230 AGGGGAACACGCCCG
1 AGGGCAACACGCCCG
36212245 CGTGGTCACT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.26, C:0.32, G:0.35, T:0.07
Consensus pattern (21 bp):
AGGGCAACACGCCCGTATGGA
Found at i:36212685 original size:23 final size:24
Alignment explanation
Indices: 36212655--36212703 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
36212645 CGACTGACCG
*
36212655 TGTGTCACACACGG-CTAGACACA
1 TGTGTCACACACGGCCTACACACA
*
36212678 TGTGTCACACATGGCCTACACACA
1 TGTGTCACACACGGCCTACACACA
36212702 TG
1 TG
36212704 CCCGTGTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (24 bp):
TGTGTCACACACGGCCTACACACA
Found at i:36213663 original size:46 final size:46
Alignment explanation
Indices: 36213589--36213757 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 46
36213579 TACGTAGCCG
36213589 ATGCATGTCCCAGACAT-TCTTACACTAGCT-TACATCTCGAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCCA
* * * *
36213634 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCCA
* * * * *
36213680 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAGGCCA
36213728 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
36213758 ACACAAATAA
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 16 0.15
46 37 0.36
47 28 0.27
48 22 0.21
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCCA
Found at i:36216430 original size:40 final size:39
Alignment explanation
Indices: 36216348--36216530 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 39
36216338 GAATGATGTT
* * * *
36216348 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATC
* *
36216388 CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
36216428 CGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
36216467 CGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATC
*
36216507 CGGGCTATGTCTCGAAGGCATTTG
1 CGGGCTAAGTC-CGAAGGCATTTG
36216531 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 36 0.30
40 75 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:36216552 original size:79 final size:79
Alignment explanation
Indices: 36216399--36216553 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
36216389 GGACTAAGAT
* **
36216399 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
36216464 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
36216478 CCGAAGGTATTTGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
36216541 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
36216554 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:36224522 original size:48 final size:51
Alignment explanation
Indices: 36224312--36224538 Score: 196
Period size: 48 Copynumber: 4.6 Consensus size: 51
36224302 GTATAATACG
* * *
36224312 GATGCCATGTCCCAGACAAGGTCTTACAGTG-GCTCATC-C--ATCAAGTA--
1 GATGCCATGTCCCAGACATGGTCTTACACTGAGCTC-TCACATATC-TGTACT
* * * *
36224359 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-AAAAC-G-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAGCTCTCACATATCTGTA--CT
** *
36224408 GACACCATGTCCCAGACATGGTCTTAGACT-AGCTCTCACATATCTGTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGAGCTCTCACATATCTGTACT
**
36224458 GATGCCATGTCCCAGACATGGTCTTACACTGACGC-CT-TTATA-C-GTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-GCTCTCACATATCTGTACT
36224506 GATGCCATGTCCCAGACATGGTCTTACACTGAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGAG
36224539 ACATCTAGTA
Statistics
Matches: 150, Mismatches: 16, Indels: 28
0.77 0.08 0.14
Matches are distributed among these distances:
45 1 0.01
46 3 0.02
47 32 0.21
48 40 0.27
49 33 0.22
50 34 0.23
51 4 0.03
52 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (51 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGAGCTCTCACATATCTGTACT
Found at i:36224623 original size:46 final size:45
Alignment explanation
Indices: 36224549--36224718 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
36224539 ACATCTAGTA
*
36224549 GCCGATGCATGTCCCGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * * * *
36224594 GCCAATGCATGTTCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATG-TCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* *
36224640 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCC-AGACAT-GTCTTACACTGGCTCTCAT-CTCGAG
*
36224688 GTCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCC-AGACATGTCTTACACT
36224719 AGCACACTAG
Statistics
Matches: 105, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
45 10 0.10
46 46 0.44
47 25 0.24
48 23 0.22
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:36224694 original size:48 final size:46
Alignment explanation
Indices: 36224312--36224718 Score: 234
Period size: 47 Copynumber: 8.7 Consensus size: 46
36224302 GTATAATACG
* * *
36224312 GATGCCATGTCCCAGACAAGGTCTTACAGTGGCTCATCCATCAAGT--A
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AAGTGCC
* * * *
36224359 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAAACGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAA-G-TGCC
** * * * * *
36224408 GACACCATGTCCCAGACATGGTCTTAGACTAGCTCTCACATATCTGTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATA--AGTGCC
* * * *
36224458 GATGCCATGTCCCAGACATGGTCTTACACTGACGC-CTTTATACGTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTG--GCTC-TCATAAGTGCC
*
36224506 GATGCCATGTCCCAGACATGGTCTTACACTGAGAC-ATC-T-AGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTG-G-CTCTCATAAGT-GCC
*
36224552 GATG-CATGTCCC-GACAT-GTCTTACACTGGCT-TACATCTCGAG-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CA--T-AAGTGCC
* * * *
36224597 AATG-CATGTTCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--AT-AAGTGCC
* *
36224643 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-GT-GCC
*
36224691 GATG-CATGTCCTAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
36224719 AGCACACTAG
Statistics
Matches: 288, Mismatches: 41, Indels: 63
0.73 0.10 0.16
Matches are distributed among these distances:
41 2 0.01
42 2 0.01
43 11 0.04
44 5 0.02
45 29 0.10
46 48 0.17
47 63 0.22
48 59 0.20
49 30 0.10
50 33 0.11
51 3 0.01
52 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGTGCC
Found at i:36227475 original size:28 final size:28
Alignment explanation
Indices: 36227435--36227490 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
36227425 TAGTCCCTGG
36227435 GCTAGCTAAATTAAACTACAACTATCTC
1 GCTAGCTAAATTAAACTACAACTATCTC
*
36227463 GCTAGTTAAATTAAACTACAACTATCTC
1 GCTAGCTAAATTAAACTACAACTATCTC
36227491 AAAAACATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.30
Consensus pattern (28 bp):
GCTAGCTAAATTAAACTACAACTATCTC
Found at i:36235987 original size:86 final size:86
Alignment explanation
Indices: 36235889--36236085 Score: 225
Period size: 86 Copynumber: 2.3 Consensus size: 86
36235879 GAGTGTTATA
* * * *
36235889 ATACTAGCACACACAATGCATCATCGAATAA-ATAAAAGCAATTATATAAGCACACATAGTGCAT
1 ATACTGGCACACACAATGCATCATCGAACAAGA-AAAAGCAATTATATAAGCACACACAGTACAT
* *
36235953 CATCAGATAAATCGAAGGAAAT
65 CATCAAATAAATCGAAGCAAAT
* * * * * *
36235975 ATACTGGCACACATAGTGCATCATCGGACAAGACAAAGCAATTATGTTAGCACACACAGTACATC
1 ATACTGGCACACACAATGCATCATCGAACAAGAAAAAGCAATTATATAAGCACACACAGTACATC
* *
36236040 ATCAAATAAATTGAAGCAATT
66 ATCAAATAAATCGAAGCAAAT
* * *
36236061 ATATTGGCACATACAATACATCATC
1 ATACTGGCACACACAATGCATCATC
36236086 AGATATTTCT
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
86 90 0.99
87 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.22
Consensus pattern (86 bp):
ATACTGGCACACACAATGCATCATCGAACAAGAAAAAGCAATTATATAAGCACACACAGTACATC
ATCAAATAAATCGAAGCAAAT
Found at i:36236071 original size:43 final size:43
Alignment explanation
Indices: 36235893--36236086 Score: 165
Period size: 43 Copynumber: 4.5 Consensus size: 43
36235883 GTTATAATAC
* * *
36235893 TAGCACACACAATGCATCATCGAATAAATAAAAGCAATTATAT
1 TAGCACACACAGTGCATCATCAAATAAATCAAAGCAATTATAT
* * * * * * *
36235936 AAGCACACATAGTGCATCATCAGATAAATCGAAGGAAATATAC
1 TAGCACACACAGTGCATCATCAAATAAATCAAAGCAATTATAT
* * ** * *
36235979 TGGCACACATAGTGCATCATCGGACAAGA-CAAAGCAATTATGT
1 TAGCACACACAGTGCATCATCAAATAA-ATCAAAGCAATTATAT
* **
36236022 TAGCACACACAGTACATCATCAAATAAATTGAAGCAATTATAT
1 TAGCACACACAGTGCATCATCAAATAAATCAAAGCAATTATAT
* * * *
36236065 TGGCACATACAATACATCATCA
1 TAGCACACACAGTGCATCATCA
36236087 GATATTTCTA
Statistics
Matches: 118, Mismatches: 31, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
42 1 0.01
43 116 0.98
44 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.22
Consensus pattern (43 bp):
TAGCACACACAGTGCATCATCAAATAAATCAAAGCAATTATAT
Found at i:36238026 original size:16 final size:16
Alignment explanation
Indices: 36238005--36238051 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
36237995 GGGGTGAATA
36238005 GAATAGGACTGTAATG
1 GAATAGGACTGTAATG
*
36238021 GAATA-GAGTTGTAATG
1 GAATAGGA-CTGTAATG
*
36238037 GAATAGAACTGTAAT
1 GAATAGGACTGTAAT
36238052 CAATAATTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 2 0.08
16 23 0.88
17 1 0.04
ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28
Consensus pattern (16 bp):
GAATAGGACTGTAATG
Found at i:36241885 original size:10 final size:11
Alignment explanation
Indices: 36241863--36241905 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
36241853 ATAGATATAA
36241863 AAAATATAAAT
1 AAAATATAAAT
36241874 AAAATA-AAAT
1 AAAATATAAAT
* *
36241884 AAAATATTATT
1 AAAATATAAAT
36241895 AAAATCATAAA
1 AAAAT-ATAAA
36241906 GTACATCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 10 0.38
11 13 0.50
12 3 0.12
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATATAAAT
Found at i:36245083 original size:16 final size:16
Alignment explanation
Indices: 36245052--36245088 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
36245042 ATGTGAATAA
36245052 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
36245068 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
36245084 TATTA
1 TATTA
36245089 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:36250942 original size:39 final size:39
Alignment explanation
Indices: 36250738--36250960 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
36250728 TTGAATGCTG
* * * * * *
36250738 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATACA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
36250778 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
36250818 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
36250858 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
36250898 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
36250937 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36250961 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:36250980 original size:79 final size:80
Alignment explanation
Indices: 36250813--36250995 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
36250803 GTGCGAGATA
* * *
36250813 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
36250878 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
36250893 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
36250957 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
36250972 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
36250996 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:36253174 original size:31 final size:30
Alignment explanation
Indices: 36253119--36253193 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 30
36253109 GATTATCAGC
* *
36253119 TAATGAAAAAGGATAGCTTTGGCTATTAAAA
1 TAATGAAAAGGGATAGCTTCGGCTA-TAAAA
*
36253150 TAATGAAAAGGGATAGGC-TCGGCTATCAAA
1 TAATGAAAAGGGATA-GCTTCGGCTATAAAA
* *
36253180 TTATGAGAAGGGAT
1 TAATGAAAAGGGAT
36253194 GGTGACGACC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 16 0.42
31 20 0.53
32 2 0.05
ACGTcount: A:0.41, C:0.08, G:0.25, T:0.25
Consensus pattern (30 bp):
TAATGAAAAGGGATAGCTTCGGCTATAAAA
Found at i:36253208 original size:30 final size:29
Alignment explanation
Indices: 36253182--36253254 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
36253172 CTATCAAATT
* *
36253182 ATGAGAAGGGATGGTGACGACCATCAATA
1 ATGAAAAGGGATGGTGACAACCATCAATA
*
36253211 ATGAAAAGGGATGGTGACAACCATCGAACA
1 ATGAAAAGGGATGGTGACAACCATC-AATA
36253241 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
36253255 CTTTAGCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 23 0.57
30 17 0.43
ACGTcount: A:0.41, C:0.12, G:0.32, T:0.15
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACAACCATCAATA
Found at i:36253223 original size:29 final size:30
Alignment explanation
Indices: 36253147--36253254 Score: 114
Period size: 30 Copynumber: 3.6 Consensus size: 30
36253137 TTGGCTATTA
* *
36253147 AAATAATGAAAAGGGATAGGCT--CGGCTATC
1 AAATAATGAAAAGGGAT-GG-TGACGACCATC
* *
36253177 AAATTATGAGAAGGGATGGTGACGACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
*
36253207 -AATAATGAAAAGGGATGGTGACAACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
* *
36253236 GAACAATGAAAAGGGATGG
1 AAATAATGAAAAGGGATGG
36253255 CTTTAGCTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.01
29 28 0.42
30 38 0.57
ACGTcount: A:0.42, C:0.12, G:0.29, T:0.18
Consensus pattern (30 bp):
AAATAATGAAAAGGGATGGTGACGACCATC
Found at i:36253319 original size:30 final size:30
Alignment explanation
Indices: 36253119--36253324 Score: 107
Period size: 30 Copynumber: 6.9 Consensus size: 30
36253109 GATTATCAGC
* * *
36253119 TAATGAAAAAGGATAGCTTTGGCTATTAAAA
1 TAATGAAAAGGGATAGCTTCGGCTA-TCAAA
36253150 TAATGAAAAGGGATAGGC-TCGGCTATCAAA
1 TAATGAAAAGGGATA-GCTTCGGCTATCAAA
* * * * * *
36253180 TTATGAGAAGGGAT-GGTGACGACCATC-AA
1 TAATGAAAAGGGATAGCT-TCGGCTATCAAA
* * ** * *
36253209 TAATGAAAAGGGAT-GGTGACAACCATCGAA
1 TAATGAAAAGGGATAGCT-TCGGCTATCAAA
* * ** **
36253239 CAATGAAAAGGGATGGCTTTAGCTATTGAA
1 TAATGAAAAGGGATAGCTTCGGCTATCAAA
** * *
36253269 TCGTG-AAATGGATAGTTTCGGCTATCAAA
1 TAATGAAAAGGGATAGCTTCGGCTATCAAA
*
36253298 TTATGAAAAGGGATAGCTTCGGCTATC
1 TAATGAAAAGGGATAGCTTCGGCTATC
36253325 GAGCTATGAA
Statistics
Matches: 136, Mismatches: 33, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
28 1 0.01
29 46 0.34
30 65 0.48
31 22 0.16
32 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (30 bp):
TAATGAAAAGGGATAGCTTCGGCTATCAAA
Found at i:36253333 original size:30 final size:30
Alignment explanation
Indices: 36253278--36253339 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
36253268 ATCGTGAAAT
* *
36253278 GGATAGTTTCGGCTATCAAATTATGAAAAG
1 GGATAGCTTCGGCTATCAAACTATGAAAAG
* *
36253308 GGATAGCTTCGGCTATCGAGCTATGAAAAG
1 GGATAGCTTCGGCTATCAAACTATGAAAAG
36253338 GG
1 GG
36253340 TTGTGACAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (30 bp):
GGATAGCTTCGGCTATCAAACTATGAAAAG
Found at i:36253569 original size:26 final size:26
Alignment explanation
Indices: 36253540--36253592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36253530 ACGTATTGAA
36253540 AAGCATAGATTATATACTACGAACTT
1 AAGCATAGATTATATACTACGAACTT
*
36253566 AAGCATAGATTATATACTATGAACTT
1 AAGCATAGATTATATACTACGAACTT
36253592 A
1 A
36253593 CTAAGCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.32
Consensus pattern (26 bp):
AAGCATAGATTATATACTACGAACTT
Found at i:36255664 original size:47 final size:47
Alignment explanation
Indices: 36255601--36255994 Score: 626
Period size: 47 Copynumber: 8.4 Consensus size: 47
36255591 CCCTTCGGGA
* * * *
36255601 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36255648 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36255695 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36255742 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36255789 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36255836 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36255883 CATATCACATATACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36255930 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36255977 CTTATCACATATACACAC
1 CTTATCACATATATACAC
36255995 CTTGTACACC
Statistics
Matches: 326, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 326 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36255798 original size:22 final size:22
Alignment explanation
Indices: 36255770--36255845 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
36255760 TTTCACATTC
36255770 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
36255792 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
36255816 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36255839 ATCACAT
1 ATCACAT
36255846 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36262731 original size:40 final size:40
Alignment explanation
Indices: 36262643--36262827 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
36262633 GCTACTCGTT
36262643 CAAATGCCTTCGGGACATTAGCCC-G-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCA
* *
36262683 CAATTGCCTTCGGGAC-TA-CCCGGATTTAGTAACTTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCA
* *
36262722 CAAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 C-AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
36262762 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
36262803 CAAA-GCCTTCCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36262828 CATCATTCAA
Statistics
Matches: 123, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
37 3 0.02
38 12 0.10
39 18 0.15
40 66 0.54
41 24 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36270482 original size:79 final size:81
Alignment explanation
Indices: 36270347--36270564 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 81
36270337 AAATCACGTA
** * *
36270347 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAAT
*
36270407 ATAGTAACTCACACAATTG
64 -TAGTAACTCACACAAATG
*
36270426 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGG-CTTAGCCCGGAATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATT
** *
36270488 AGTTTCTCTCACAAATG
65 AGTAACTCACACAAATG
** *
36270505 CCTTCGGATCTTAGTCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGA
36270565 CATCATTCAA
Statistics
Matches: 117, Mismatches: 13, Indels: 17
0.80 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 47 0.40
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
GTAACTCACACAAATG
Found at i:36270564 original size:40 final size:40
Alignment explanation
Indices: 36270380--36270564 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
36270370 GCTACTCGTT
* *
36270380 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
* * *
36270420 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
** *
36270460 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTTTCTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCACA
* *
36270499 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCA-CA
36270540 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36270565 CATCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 80 0.66
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
Found at i:36273671 original size:78 final size:78
Alignment explanation
Indices: 36273581--36273724 Score: 261
Period size: 78 Copynumber: 1.8 Consensus size: 78
36273571 TTGGTTTTGG
36273581 TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGAAGCATGAATGGTATGGCTCA
1 TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGAAGCATGAATGGTATGGCTCA
36273646 ACTATGTTTATGA
66 ACTATGTTTATGA
* * *
36273659 TATCTTTTGGTGATTGCCAAATTACGTCATTTTTGGTTCTTATGATGCATGAATGGTATGGCTCA
1 TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGAAGCATGAATGGTATGGCTCA
36273724 A
66 A
36273725 TTGGTATGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (78 bp):
TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGAAGCATGAATGGTATGGCTCA
ACTATGTTTATGA
Found at i:36279262 original size:39 final size:41
Alignment explanation
Indices: 36279166--36279344 Score: 203
Period size: 40 Copynumber: 4.5 Consensus size: 41
36279156 TGATGTCTGA
* * *
36279166 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATATCCGG
*
36279206 ACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-TCCGG
1 GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATATCCGG
* *
36279246 GCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAA-ATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGG
* *
36279285 GTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGG
*
36279325 GCTATGTCCCGAA-GCATTTG
1 GCTAAGTCCCGAAGGCATTTG
36279345 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
39 42 0.35
40 67 0.56
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGG
Found at i:36279362 original size:79 final size:78
Alignment explanation
Indices: 36279214--36279377 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 78
36279204 GGACTAAGAT
* ***
36279214 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
36279279 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
* *
36279293 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA-GCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
36279355 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
36279371 CCGAAGG
1 CCGAAGG
36279378 TACGTGATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
78 18 0.25
79 49 0.67
80 6 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGTTAAATC
Found at i:36287345 original size:40 final size:39
Alignment explanation
Indices: 36287255--36287439 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
36287245 TCGAATGATG
* * * *
36287255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
** *
36287295 TCCGTACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36287335 TCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
36287374 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
36287415 -CCGGGCTATGTCTCGAAAGCATTTG
1 TCCGGGCTAAGTC-CGAAGGCATTTG
36287440 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36287461 original size:79 final size:79
Alignment explanation
Indices: 36287308--36287472 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
36287298 GTACTAAGAT
* * ***
36287308 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
*
36287373 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
36287387 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAAGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAGCATTGGAACGAGTTA-C
* *
36287450 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36287466 CCGAAGG
1 CCGAAGG
36287473 TACGTGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.68
80 21 0.29
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36293316 original size:68 final size:66
Alignment explanation
Indices: 36293244--36293410 Score: 169
Period size: 67 Copynumber: 2.5 Consensus size: 66
36293234 CATCATGTGT
* * * *
36293244 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
36293307 TGTAG
62 TGTAG
** * *
36293312 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
36293377 AG
65 AG
* * *
36293379 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTC
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTC
36293411 ACATAGGTGG
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
64 24 0.28
65 3 0.04
66 13 0.15
67 32 0.38
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:36293349 original size:64 final size:64
Alignment explanation
Indices: 36293268--36293451 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
36293258 AGACATTATG
* * *
36293268 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
36293332 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36293397 AA
63 AA
* * * *
36293399 AT-TGGCTAGGTCACATAGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
36293452 CGAACTGTAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 20 0.20
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36295456 original size:46 final size:45
Alignment explanation
Indices: 36295389--36295554 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 45
36295379 CGCCCCTAAT
* *
36295389 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAG
1 TGAACTCGGACTCAACCCAACGAGTTCGGGCGTT-GCATCCATAAG
* * *
36295435 TGAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTTACAT--TTCA-
1 TGAACTCGGACTCAACCCAACGAGTTCGG--G-C--GTTGCATCCATAAG
* * *
36295482 CGAACTCGGACTCAA-CCAACGAGTT-GGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACCCAACGAGTTCGGGC-GTTGCATCCATAAG
*
36295526 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACCCAACGAGTTCGG
36295555 ATGCTCAACC
Statistics
Matches: 97, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
41 6 0.06
42 1 0.01
43 2 0.02
44 14 0.14
45 11 0.11
46 39 0.40
47 14 0.14
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACCCAACGAGTTCGGGCGTTGCATCCATAAG
Found at i:36295547 original size:91 final size:93
Alignment explanation
Indices: 36295390--36295558 Score: 279
Period size: 91 Copynumber: 1.8 Consensus size: 93
36295380 GCCCCTAATT
* *
36295390 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACCCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
36295455 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
36295483 GAACTCGGACTCAAC-CAACGAG-TTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
36295546 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36295559 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 49 0.69
92 7 0.10
93 15 0.21
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:36296010 original size:30 final size:30
Alignment explanation
Indices: 36295976--36296035 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36295966 ATTTAATACG
36295976 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
36296006 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36296036 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36299377 original size:13 final size:13
Alignment explanation
Indices: 36299359--36299383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36299349 GTAACTAGAC
36299359 AAAGAAAAGAAAA
1 AAAGAAAAGAAAA
36299372 AAAGAAAAGAAA
1 AAAGAAAAGAAA
36299384 GGGTGTTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAAA
Found at i:36301423 original size:47 final size:47
Alignment explanation
Indices: 36301316--36301750 Score: 645
Period size: 47 Copynumber: 9.1 Consensus size: 47
36301306 GAAATGATAG
36301316 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
36301365 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36301412 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
36301461 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36301508 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36301555 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * *
36301604 CAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36301651 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
36301700 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36301747 TAAG
1 TAAG
36301751 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 28, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
47 190 0.54
49 162 0.46
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Done.