Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 108 of 343
Found at i:36301480 original size:96 final size:97
Alignment explanation
Indices: 36301319--36301750 Score: 664
Period size: 96 Copynumber: 4.5 Consensus size: 97
36301309 ATGATAGTAA
36301319 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
*
36301384 TGATGAATGTGAAAGTG-TATATATGTGATAA
66 TGATGAATGTGAAAGTGATATATATGTGATAG
36301415 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
36301480 TGATGAATGTGAAAGTG-TATATATGTGATAG
66 TGATGAATGTGAAAGTGATATATATGTGATAG
36301511 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
* *
36301574 TGATGAATGTGGAAGTGTATATATATGTGACAG
66 TGATGAATGTGAAAGTG-ATATATATGTGATAG
* * * *
36301607 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
* *
36301670 TGATGAATGTGGAAGTGTATATATATGTGACAG
66 TGATGAATGTGAAAGTG-ATATATATGTGATAG
* * * * *
36301703 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
36301751 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
94 46 0.14
96 275 0.85
97 1 0.00
98 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (97 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGATATATATGTGATAG
Found at i:36301576 original size:143 final size:143
Alignment explanation
Indices: 36301316--36301750 Score: 676
Period size: 143 Copynumber: 3.0 Consensus size: 143
36301306 GAAATGATAG
36301316 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
36301381 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
36301446 TGTATATATATGTGA
129 TGTATATATATGTGA
*
36301461 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
36301526 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
36301591 TATATATATGTGA
131 TATATATATGTGA
* * * * * *
36301604 CAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * * * *
36301669 GTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
66 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
36301734 TGTATA-A-ATGTGA
129 TGTATATATATGTGA
36301747 TAAG
1 TAAG
36301751 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 20, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
143 188 0.70
144 1 0.00
145 79 0.29
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGA
Found at i:36307403 original size:93 final size:93
Alignment explanation
Indices: 36307295--36307465 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
36307285 GCCCCTAATT
* *
36307295 GAACTCGGACTCAACTCAATGAGCTCGGGA-GTTCGCATCCATAAGTGAACTCGGACTCAACCCA
1 GAACTCGGACTCAACTCAACGAG-TCGGGACATTCGCATCCATAAGTGAACTCGGACTCAACCCA
36307359 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
** * *
36307388 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTCGGGACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
36307453 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36307466 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTCGGGACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:36307449 original size:46 final size:46
Alignment explanation
Indices: 36307294--36307462 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
36307284 CGCCCCTAAT
* * * *
36307294 TGAACTCGGACTCAACTCAATGAGCTCGGGA-GTTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAG
* * * * *
36307340 TGAACTCGGACTCAACCCAACGAGTTCGGATGCCTAGTTACAT--TTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAG
* *
36307387 CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
36307433 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
36307463 TGCTCAACCA
Statistics
Matches: 97, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 5 0.05
46 52 0.54
47 27 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
Found at i:36307903 original size:30 final size:30
Alignment explanation
Indices: 36307869--36307928 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36307859 ATTTAATACG
36307869 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
36307899 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36307929 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36312425 original size:68 final size:66
Alignment explanation
Indices: 36312353--36312524 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
36312343 CATCATGTGT
* * * *
36312353 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
36312416 TGTAG
62 TGTAG
** * *
36312421 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
36312486 AG
65 AG
* * * *
36312488 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
36312525 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:36312458 original size:64 final size:64
Alignment explanation
Indices: 36312377--36312560 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
36312367 AGACATTATG
* * *
36312377 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
36312441 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36312506 AA
63 AA
* * *
36312508 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
36312561 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36319077 original size:33 final size:33
Alignment explanation
Indices: 36319035--36319097 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
36319025 ACTGTCTTTG
*
36319035 TTCTATGTTTACTATCCTAGTGGACTATCTCTT
1 TTCTATGTTTACTATCCCAGTGGACTATCTCTT
* *
36319068 TTCTCTGTTTATTATCCCAGTGGACTATCT
1 TTCTATGTTTACTATCCCAGTGGACTATCT
36319098 TTATTATGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.17, C:0.22, G:0.13, T:0.48
Consensus pattern (33 bp):
TTCTATGTTTACTATCCCAGTGGACTATCTCTT
Found at i:36319110 original size:33 final size:32
Alignment explanation
Indices: 36319040--36319132 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 32
36319030 CTTTGTTCTA
* * *
36319040 TGTTTACTATCCTAGTGGACTATCTCTTTTCTC
1 TGTTTAATATCCAAGTGGACTATCT-TTTTATC
* * *
36319073 TGTTTATTATCCCAGTGGACTATCTTTATTATG
1 TGTTTAATATCCAAGTGGACTATCTTT-TTATC
* *
36319106 TGTTTAATGTCCAAGTAGACTATCTTT
1 TGTTTAATATCCAAGTGGACTATCTTT
36319133 GTGGATGCCG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
32 2 0.04
33 49 0.96
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (32 bp):
TGTTTAATATCCAAGTGGACTATCTTTTTATC
Found at i:36319405 original size:109 final size:109
Alignment explanation
Indices: 36319270--36319500 Score: 275
Period size: 109 Copynumber: 2.1 Consensus size: 109
36319260 TTTATGATTC
* * * *** *
36319270 TACGCCATATACTTTATACCTTGTACCATGTTGTCATGGTGTATGTT-ATCAATGGTCTTACGCT
1 TACGCCATATACCTTATACCTTGTACCATGCTGCCATGACATAT-TTCATCAATGGTCTTACACT
** * *
36319334 ATGTACCTCATACCAGACTATCATAGTGTCTTTCATTTATGCTCT
65 ACATACCTCATACCAGACTACCATAGTGTCTTTCATCTATGCTCT
* * *
36319379 TATGCCATATACCTTATACCTTGTACCATGCTGCCATGACATCTTTCATCCATGGTCTTACACTA
1 TACGCCATATACCTTATACCTTGTACCATGCTGCCATGACATATTTCATCAATGGTCTTACACTA
* * * *
36319444 CATACCTCATACCAGGCTACCATAGTTTGTTTCATCTATGGTCT
66 CATACCTCATACCAGACTACCATAGTGTCTTTCATCTATGCTCT
*
36319488 TACGCAATATACC
1 TACGCCATATACC
36319501 ATTGTCACAA
Statistics
Matches: 101, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
108 2 0.02
109 99 0.98
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (109 bp):
TACGCCATATACCTTATACCTTGTACCATGCTGCCATGACATATTTCATCAATGGTCTTACACTA
CATACCTCATACCAGACTACCATAGTGTCTTTCATCTATGCTCT
Found at i:36321983 original size:15 final size:16
Alignment explanation
Indices: 36321963--36321992 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
36321953 TAACAACTAA
36321963 TATATAAT-TATATTT
1 TATATAATATATATTT
36321978 TATATAATATATATT
1 TATATAATATATATT
36321993 AATTGCTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATAATATATATTT
Found at i:36324123 original size:17 final size:17
Alignment explanation
Indices: 36324101--36324136 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
36324091 ATTGTTTTTC
*
36324101 TTTTTCAGAATACATTA
1 TTTTTCAGAAAACATTA
36324118 TTTTTCAGAAAACATTA
1 TTTTTCAGAAAACATTA
36324135 TT
1 TT
36324137 GTTATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (17 bp):
TTTTTCAGAAAACATTA
Found at i:36326028 original size:24 final size:24
Alignment explanation
Indices: 36325974--36326028 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
36325964 TGGCTCTCAC
* *
36325974 GAGCTTCCTGATTAATGGCTCCTT
1 GAGCTTCCCGATTAATGGCTCATT
* *
36325998 GACCTTCCCG-TTTATGGCTCATAT
1 GAGCTTCCCGATTAATGGCTCAT-T
36326022 GAGCTTC
1 GAGCTTC
36326029 TTGATAATTG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 10 0.40
24 15 0.60
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.36
Consensus pattern (24 bp):
GAGCTTCCCGATTAATGGCTCATT
Found at i:36326040 original size:25 final size:25
Alignment explanation
Indices: 36326011--36326069 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
36326001 CTTCCCGTTT
* *
36326011 ATGGCTCAT-ATGAGCTTCTTGA-TA
1 ATGGCTC-TCATGAGATGCTTGATTA
36326035 ATTGGCTCTCATGAGATGCTTGATTA
1 A-TGGCTCTCATGAGATGCTTGATTA
36326061 ATGGCTCTC
1 ATGGCTCTC
36326070 TAGAGCTACC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.07
25 25 0.83
26 3 0.10
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (25 bp):
ATGGCTCTCATGAGATGCTTGATTA
Found at i:36326173 original size:25 final size:25
Alignment explanation
Indices: 36326119--36326173 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
36326109 ATGACTCTTT
*
36326119 TGAGCTTCCCGTTATATGGCTCGAA
1 TGAGCTTCCCGTTACATGGCTCGAA
* * *
36326144 AGAGCTTCCTGATTACAT-GCTCGCA
1 TGAGCTTCCCG-TTACATGGCTCGAA
36326169 TGAGC
1 TGAGC
36326174 ATACCTGTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (25 bp):
TGAGCTTCCCGTTACATGGCTCGAA
Found at i:36329167 original size:40 final size:40
Alignment explanation
Indices: 36329097--36329292 Score: 324
Period size: 40 Copynumber: 4.9 Consensus size: 40
36329087 CCTTCGAGGT
*
36329097 TTAG-CCGGATATAGCAACTCA-CACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACT-AGCACAAATGCCTTCGGGAC
*
36329136 TTAGCCCGGATATAGTAACTAGCACAGATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
36329176 TTAGCCCAGATATAGTAACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
36329216 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
36329256 TTAGCCCAGATATAGTCACTAGCACAAATGCCTTCGG
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
36329293 ATCTTAGTCC
Statistics
Matches: 148, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 5 0.03
40 143 0.97
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:36330687 original size:13 final size:13
Alignment explanation
Indices: 36330669--36330694 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36330659 ATTTTTATTT
36330669 TTAACATAAAATA
1 TTAACATAAAATA
36330682 TTAACATAAAATA
1 TTAACATAAAATA
36330695 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:36337319 original size:79 final size:79
Alignment explanation
Indices: 36337189--36337353 Score: 260
Period size: 79 Copynumber: 2.1 Consensus size: 79
36337179 AACCCAAGTA
* *
36337189 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCATCGGGACTTAGCCCAGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCATCGGGACTTAGCCCAGATATAGT
36337254 AACTAGCAC-AATG
66 AACTAGCACAAATG
* * *
36337267 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGCAACTAGCACAAATGCCATCGGGACTTAGCCCAGATATAG
*
36337332 TCACTAGCACAAATG
65 TAACTAGCACAAATG
36337347 CCTTCGG
1 CCTTCGG
36337354 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
78 13 0.16
79 55 0.70
80 11 0.14
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCATCGGGACTTAGCCCAGATATAGT
AACTAGCACAAATG
Found at i:36337360 original size:40 final size:40
Alignment explanation
Indices: 36337189--36337353 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
36337179 AACCCAAGTA
* * *
36337189 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
36337228 CCATCGGGACTTAGCCCAGATATAGTAACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
36337267 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
36337307 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
36337347 CCTTCGG
1 CCTTCGG
36337354 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 49 0.42
40 67 0.58
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:36338746 original size:13 final size:13
Alignment explanation
Indices: 36338728--36338753 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36338718 ATTTTTATTT
36338728 TTAACATAAAATA
1 TTAACATAAAATA
36338741 TTAACATAAAATA
1 TTAACATAAAATA
36338754 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:36341553 original size:29 final size:29
Alignment explanation
Indices: 36341492--36341581 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
36341482 CACATACCTG
*
36341492 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
36341520 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
36341549 TATATGACCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
36341578 TATA
1 TATA
36341582 GTCATGTTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 18 0.32
29 39 0.68
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:36348554 original size:25 final size:24
Alignment explanation
Indices: 36348468--36348631 Score: 114
Period size: 24 Copynumber: 6.7 Consensus size: 24
36348458 TGGACACACC
* *
36348468 ATGGCTCTCACGAGCTTCCCAATTA
1 ATGGCTCTCATGAGCTTCCCGA-TA
* * *
36348493 ATGGCTCTCTTGAGCTTCCCGTTT
1 ATGGCTCTCATGAGCTTCCCGATA
* *
36348517 ATGGCT-TGTATGAGCTTCCTGATA
1 ATGGCTCT-CATGAGCTTCCCGATA
* **
36348541 ATTGGCTCTCATGAGATTCTTGATTA
1 A-TGGCTCTCATGAGCTTCCCGA-TA
* * *
36348567 ATGGCTCTTAAGAGCTACCCGATA
1 ATGGCTCTCATGAGCTTCCCGATA
* * * *
36348591 TTGGCTCGCATGACCTTCCCGATT
1 ATGGCTCTCATGAGCTTCCCGATA
* *
36348615 ACGGCTCGCATGAGCTT
1 ATGGCTCTCATGAGCTT
36348632 TGTAACAACC
Statistics
Matches: 106, Mismatches: 29, Indels: 9
0.74 0.20 0.06
Matches are distributed among these distances:
23 1 0.01
24 52 0.49
25 49 0.46
26 4 0.04
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.34
Consensus pattern (24 bp):
ATGGCTCTCATGAGCTTCCCGATA
Found at i:36349253 original size:21 final size:21
Alignment explanation
Indices: 36349228--36349267 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
36349218 TGAAACTATG
*
36349228 AGTATTAT-GAAGTTTGATGAT
1 AGTA-TATGGAAGATTGATGAT
36349249 AGTATATGGAAGATTGATG
1 AGTATATGGAAGATTGATG
36349268 TTGGGTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.35, C:0.00, G:0.28, T:0.38
Consensus pattern (21 bp):
AGTATATGGAAGATTGATGAT
Found at i:36362352 original size:40 final size:40
Alignment explanation
Indices: 36362297--36362558 Score: 438
Period size: 40 Copynumber: 6.6 Consensus size: 40
36362287 TATTCGAATG
36362297 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
36362337 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36362377 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36362417 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36362457 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
36362497 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTT-ACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
36362537 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36362559 TACTTGGGTT
Statistics
Matches: 209, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 13 0.06
40 194 0.93
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:36390511 original size:14 final size:16
Alignment explanation
Indices: 36390465--36390527 Score: 78
Period size: 16 Copynumber: 4.1 Consensus size: 16
36390455 TATATAAACA
36390465 TAAA-AATTTAATAAT
1 TAAATAATTTAATAAT
*
36390480 CTAAATAATATAATAAT
1 -TAAATAATTTAATAAT
*
36390497 TAACT-ATTTAA-AAT
1 TAAATAATTTAATAAT
36390511 TAAATAATTTAATAAT
1 TAAATAATTTAATAAT
36390527 T
1 T
36390528 TTTTATTACC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 7 0.17
15 11 0.28
16 12 0.30
17 10 0.25
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAATAATTTAATAAT
Found at i:36390528 original size:8 final size:8
Alignment explanation
Indices: 36390469--36390528 Score: 54
Period size: 8 Copynumber: 7.6 Consensus size: 8
36390459 TAAACATAAA
36390469 AATTTAAT
1 AATTTAAT
*
36390477 AATCTAAAT
1 AAT-TTAAT
*
36390486 AATATAAT
1 AATTTAAT
36390494 AA-TTAACT
1 AATTTAA-T
36390502 -ATTTAA-
1 AATTTAAT
*
36390508 AATTAAAT
1 AATTTAAT
36390516 AATTTAAT
1 AATTTAAT
36390524 AATTT
1 AATTT
36390529 TTTATTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
7 9 0.22
8 25 0.61
9 7 0.17
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (8 bp):
AATTTAAT
Found at i:36390687 original size:21 final size:21
Alignment explanation
Indices: 36390663--36390708 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
36390653 AAAAAAATAT
*
36390663 TTGAGGATTGAGGATTG-GAAA
1 TTGAGGATTGAAGATTGAG-AA
36390684 TTGAGGATTGAAGATTGAGAA
1 TTGAGGATTGAAGATTGAGAA
36390705 TTGA
1 TTGA
36390709 AAATTGGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (21 bp):
TTGAGGATTGAAGATTGAGAA
Found at i:36390688 original size:14 final size:14
Alignment explanation
Indices: 36390669--36390714 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
36390659 ATATTTGAGG
36390669 ATTGAGGATTGGAA
1 ATTGAGGATTGGAA
36390683 ATTGAGGATT-GAA
1 ATTGAGGATTGGAA
* *
36390696 GATTGAGAATTGAAA
1 -ATTGAGGATTGGAA
36390711 ATTG
1 ATTG
36390715 GAAATCGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 3 0.11
14 23 0.82
15 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.30
Consensus pattern (14 bp):
ATTGAGGATTGGAA
Found at i:36390713 original size:7 final size:7
Alignment explanation
Indices: 36390676--36390754 Score: 52
Period size: 7 Copynumber: 11.4 Consensus size: 7
36390666 AGGATTGAGG
*
36390676 ATTGGAA
1 ATTGAAA
**
36390683 ATTGAGG
1 ATTGAAA
*
36390690 ATTGAAG
1 ATTGAAA
*
36390697 ATTGAGA
1 ATTGAAA
36390704 ATTGAAA
1 ATTGAAA
*
36390711 ATTGGAA
1 ATTGAAA
* *
36390718 ATCGGAA
1 ATTGAAA
36390725 ATTG-AA
1 ATTGAAA
36390731 ATTGAAA
1 ATTGAAA
* *
36390738 ACTGAAG
1 ATTGAAA
*
36390745 ATTGAGA
1 ATTGAAA
36390752 ATT
1 ATT
36390755 TAGGATGGAG
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
6 6 0.11
7 50 0.89
ACGTcount: A:0.44, C:0.03, G:0.25, T:0.28
Consensus pattern (7 bp):
ATTGAAA
Found at i:36394139 original size:25 final size:27
Alignment explanation
Indices: 36394105--36394163 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
36394095 CTTATGAGCA
*
36394105 TCCCGATTAA-AGGTTCTTTGTGAACT
1 TCCCGATTAATAGGCTCTTTGTGAACT
* *
36394131 TCCCG-TTAATTGGCTCTTTGTGAGCT
1 TCCCGATTAATAGGCTCTTTGTGAACT
36394157 TCCCGAT
1 TCCCGAT
36394164 AGTGCTTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.14
26 23 0.82
27 1 0.04
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (27 bp):
TCCCGATTAATAGGCTCTTTGTGAACT
Found at i:36394245 original size:24 final size:25
Alignment explanation
Indices: 36394213--36394286 Score: 100
Period size: 24 Copynumber: 3.1 Consensus size: 25
36394203 TTCCTATTAC
36394213 ATGGCTCTTTATGAGCTTCCCGA-T
1 ATGGCTCTTTATGAGCTTCCCGATT
* * *
36394237 ATGGTTCTTTGTGAACTTCCCGATT
1 ATGGCTCTTTATGAGCTTCCCGATT
36394262 ATGGCTC-TTATGAGCTTCCC-ATT
1 ATGGCTCTTTATGAGCTTCCCGATT
36394285 AT
1 AT
36394287 ATAGACCGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
23 5 0.12
24 31 0.72
25 7 0.16
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (25 bp):
ATGGCTCTTTATGAGCTTCCCGATT
Found at i:36404537 original size:21 final size:21
Alignment explanation
Indices: 36404513--36404582 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
36404503 TGATCTAAAA
36404513 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * * *
36404534 TCA-TGATATATGTGACATCTAAGC
1 TCATTGA-GT-TGTG--GTCTGAGT
36404558 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
36404579 TCAT
1 TCAT
36404583 GATGTATGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.36
22 4 0.11
23 4 0.11
24 9 0.25
25 3 0.08
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:36408528 original size:40 final size:39
Alignment explanation
Indices: 36408473--36408583 Score: 159
Period size: 40 Copynumber: 2.8 Consensus size: 39
36408463 TATTCGGATG
* *
36408473 ATATCCGGGCTAAGTCCCGAGGGCATTTGTTCAAGTTACT
1 ATATCCGGGCTAAGTCCCGA-GGCATTTGTGCAAGTGACT
* *
36408513 ATATCCGGGCTAAGTCCCGAATGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCG-AGGCATTTGTGCAAGTGACT
*
36408553 ATATCCGGGCTAAGACCCGAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAGGCATTTGTGC
36408584 GAGTTGTATA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 11 0.17
40 52 0.81
41 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAGGCATTTGTGCAAGTGACT
Found at i:36411775 original size:19 final size:19
Alignment explanation
Indices: 36411749--36411785 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
36411739 AGTGAAAAGG
36411749 AACGAG-AAATGGGCCAAA
1 AACGAGAAAATGGGCCAAA
36411767 AACGAAGAAAATGGGCCAA
1 AACG-AGAAAATGGGCCAA
36411786 GGTACGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 2 0.12
20 11 0.65
ACGTcount: A:0.51, C:0.16, G:0.27, T:0.05
Consensus pattern (19 bp):
AACGAGAAAATGGGCCAAA
Found at i:36415221 original size:13 final size:13
Alignment explanation
Indices: 36415203--36415232 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
36415193 ATCATAAACC
36415203 ACATAGTTCATAT
1 ACATAGTTCATAT
36415216 ACATAGTTCATAT
1 ACATAGTTCATAT
36415229 ACAT
1 ACAT
36415233 TTTCACATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (13 bp):
ACATAGTTCATAT
Found at i:36415387 original size:50 final size:50
Alignment explanation
Indices: 36415307--36415409 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
36415297 TATTCACAAG
36415307 CATAGTATACATTTCAAACGTACCTAATTCAGATACACATTTCATATATT
1 CATAGTATACATTTCAAACGTACCTAATTCAGATACACATTTCATATATT
* *
36415357 CATAGTATACATTTCAAACGTACTTGATTCAGATACACATTTCATATATT
1 CATAGTATACATTTCAAACGTACCTAATTCAGATACACATTTCATATATT
36415407 CAT
1 CAT
36415410 TCTTTTCTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (50 bp):
CATAGTATACATTTCAAACGTACCTAATTCAGATACACATTTCATATATT
Found at i:36415591 original size:42 final size:43
Alignment explanation
Indices: 36415483--36415643 Score: 114
Period size: 43 Copynumber: 3.7 Consensus size: 43
36415473 GCTCATACAC
* * * * *
36415483 TGCCAACATCCCAGACGTGGTCTTACATGTAATCA-AATATCGA
1 TGCCAACGTCCCAGACATGGTCTTACACGAAATCATAA-GTCGA
* * * * *
36415526 TGCC-ACTATTCGAGATAGGGTCTTACACGAAATCA-AA-TACGA
1 TGCCAAC-GTCCCAGACATGGTCTTACACGAAATCATAAGT-CGA
* * * *
36415568 TGTCGATGTCTCAGACATGGTCTTACACGTAAATCATAAGTCGA
1 TGCCAACGTCCCAGACATGGTCTTACACG-AAATCATAAGTCGA
**
36415612 TGCCAACGTCCCAGATGTGGTCTTACACGAAA
1 TGCCAACGTCCCAGACATGGTCTTACACGAAA
36415644 ACACATATTG
Statistics
Matches: 91, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 37 0.41
44 28 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (43 bp):
TGCCAACGTCCCAGACATGGTCTTACACGAAATCATAAGTCGA
Found at i:36423744 original size:24 final size:23
Alignment explanation
Indices: 36423716--36423875 Score: 115
Period size: 24 Copynumber: 6.6 Consensus size: 23
36423706 AATCGATTTT
*
36423716 GCACACAAAGTGCTATTCAAATCC
1 GCACACATAGTGC-ATTCAAATCC
* * * *
36423740 GCACACTTAGTGCCATGCTAACCC
1 GCACACATAGTG-CATTCAAATCC
*
36423764 GCACACATAGTGCCTT-AGATATCC
1 GCACACATAGTGCATTCA-A-ATCC
* * * *
36423788 ACACACTCGTATTGACATTCAAATCA
1 GCACA--CATAGTG-CATTCAAATCC
*
36423814 GCACACATAGTGCTATTCAATTCC
1 GCACACATAGTGC-ATTCAAATCC
36423838 GCACACATAGTGCCATTCAAAATCC
1 GCACACATAGTG-CATTC-AAATCC
*
36423863 GCACACTTAGTGC
1 GCACACATAGTGC
36423876 CAATGTCATT
Statistics
Matches: 104, Mismatches: 22, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
23 4 0.04
24 65 0.62
25 18 0.17
26 12 0.12
27 4 0.04
28 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.24
Consensus pattern (23 bp):
GCACACATAGTGCATTCAAATCC
Found at i:36423843 original size:50 final size:48
Alignment explanation
Indices: 36423716--36423875 Score: 119
Period size: 50 Copynumber: 3.3 Consensus size: 48
36423706 AATCGATTTT
* * * * *
36423716 GCACACAAAGTGCTATTCAAATCCGCACACTTAGTGCCATGCTAACCC
1 GCACACATAGTGCTATTCAATTCCGCACACTTAGTGACATGCAAACCA
* * * * *
36423764 GCACACATAGTGC-CTT-AGATATCCACACACTCGTATTGACATTCAAATCA
1 GCACACATAGTGCTATTCA-AT-TCCGCACACT--TAGTGACATGCAAACCA
* * *
36423814 GCACACATAGTGCTATTCAATTCCGCACACATAGTGCCATTCAAAATCC-
1 GCACACATAGTGCTATTCAATTCCGCACACTTAGTGACATGC-AAA-CCA
*
36423863 GCACACTTAGTGC
1 GCACACATAGTGC
36423876 CAATGTCATT
Statistics
Matches: 87, Mismatches: 17, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
46 1 0.01
47 3 0.03
48 30 0.34
49 15 0.17
50 33 0.38
51 4 0.05
52 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.24
Consensus pattern (48 bp):
GCACACATAGTGCTATTCAATTCCGCACACTTAGTGACATGCAAACCA
Found at i:36425970 original size:39 final size:40
Alignment explanation
Indices: 36425813--36426037 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
36425803 GCTCCTCGTT
* *
36425813 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
36425853 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
36425893 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
36425933 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
36425972 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36426013 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36426038 CATCATTCAA
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 113 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36425997 original size:119 final size:120
Alignment explanation
Indices: 36425815--36426037 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
36425805 TCCTCGTTCA
* *
36425815 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
36425880 TTAGTAACTCA-CACAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTCAGCACAA-AGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
36425935 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* * * *
36425997 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTCAGCACAAAGCCTTCGGGACTTAACCCGGA
36426038 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 67 0.76
120 17 0.19
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTCAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:36432603 original size:7 final size:8
Alignment explanation
Indices: 36432578--36432602 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36432568 AGACTACTTC
36432578 TTATTTTT
1 TTATTTTT
36432586 TTATTTTT
1 TTATTTTT
36432594 TTATTTTT
1 TTATTTTT
36432602 T
1 T
36432603 AACAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:36439482 original size:43 final size:42
Alignment explanation
Indices: 36439417--36439517 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
36439407 CCAACGTCCT
*** *
36439417 AGACATGGTCTTACATGTAATCAAATATCAATGCCACTATCCC
1 AGACATGGTCTTACACAAAATCAAATAT-AATGCCAATATCCC
* * * *
36439460 AGACAGGGTCTTACACAAAATCAAGTATGATGCCAATGTCCC
1 AGACATGGTCTTACACAAAATCAAATATAATGCCAATATCCC
*
36439502 AGACATGGACTTACAC
1 AGACATGGTCTTACAC
36439518 GTAAATCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 25 0.52
43 23 0.48
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
AGACATGGTCTTACACAAAATCAAATATAATGCCAATATCCC
Found at i:36439506 original size:42 final size:43
Alignment explanation
Indices: 36439447--36439548 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
36439437 TCAAATATCA
* * * *
36439447 ATGCCACTATCCCAGACAGGGTCTTACAC-AAAATC-AAGTATG
1 ATGCCAATGTCCCAGACAGGGACTTACACGAAAATCAAAGT-CG
* *
36439489 ATGCCAATGTCCCAGACATGGACTTACACGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACAGGGACTTACACGAAAATCA-AAGTCG
*
36439533 ATGCCAACGTCCCAGA
1 ATGCCAATGTCCCAGA
36439549 AGTGGTCGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 25 0.50
43 5 0.10
44 16 0.32
45 4 0.08
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGACTTACACGAAAATCAAAGTCG
Found at i:36439524 original size:43 final size:43
Alignment explanation
Indices: 36439407--36439548 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 43
36439397 TCGTACAATT
* * * *
36439407 CCAACGTCCTAGACATGGTCTTACATGT-AATCAAATATCAATG
1 CCAACGTCCCAGACATGGTCTTACACGTAAATCAAGTAT-GATG
* * *
36439450 CC-ACTATCCCAGACAGGGTCTTACAC-AAAATCAAGTATGATG
1 CCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAGTATGATG
* * *
36439492 CCAATGTCCCAGACATGGACTTACACGTAAATCATAAGT-CGATG
1 CCAACGTCCCAGACATGGTCTTACACGTAAATC--AAGTATGATG
36439536 CCAACGTCCCAGA
1 CCAACGTCCCAGA
36439549 AGTGGTCGTA
Statistics
Matches: 79, Mismatches: 14, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
42 25 0.32
43 34 0.43
44 16 0.20
45 4 0.05
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
CCAACGTCCCAGACATGGTCTTACACGTAAATCAAGTATGATG
Found at i:36452320 original size:46 final size:46
Alignment explanation
Indices: 36452269--36452442 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
36452259 GTTGAGAATT
36452269 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * * *
36452315 TGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
***
36452362 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
36452408 CGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36452443 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 27 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:36460108 original size:45 final size:45
Alignment explanation
Indices: 36460052--36460138 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
36460042 GAACTATGTG
*
36460052 ATCTGAACTCATTGTGTTGTGGTCTGAGTTCATGATATATGTAAC
1 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTAAC
* * *
36460097 ATCTGATCTCATTGAGTTGTGGTTTGAGTTCATGATGTATGT
1 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGT
36460139 GACACATGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.43
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTAAC
Found at i:36463628 original size:45 final size:45
Alignment explanation
Indices: 36463556--36463669 Score: 174
Period size: 45 Copynumber: 2.5 Consensus size: 45
36463546 AGAATCCAAA
* *
36463556 CTCAATGAGTTAGTCCGGGTTCATGATATGTATGAGACATCCGAG
1 CTCATTGAGTTGGTCCGGGTTCATGATATGTATGAGACATCCGAG
* * *
36463601 CTCGTTGAGTTGGTCCGGGTTCGTGATATGTATGAGACATCTGAG
1 CTCATTGAGTTGGTCCGGGTTCATGATATGTATGAGACATCCGAG
*
36463646 CTCATTGAGTTGGTCCGAGTTCAT
1 CTCATTGAGTTGGTCCGGGTTCAT
36463670 TATGGATGTG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (45 bp):
CTCATTGAGTTGGTCCGGGTTCATGATATGTATGAGACATCCGAG
Found at i:36466616 original size:108 final size:110
Alignment explanation
Indices: 36466472--36466672 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
36466462 ATCCTTTTGA
* *
36466472 AACTTACCATTGCCATGTCTCGACATGGCCTTACATGGTATCATTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGCCTGACATGGTATCATTGCCTTA-GAAACCTCACCAA
*
36466535 TGCCA-TGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGACATTGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * * * *
36466580 AACTTATCAATGCCATGTCTTGACATGGTCTGACATGGTGTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGCCTGACATGGTATCATTGCCTTAGAAACCTCACCAAT
*
36466645 TACATTGCCTTGGCATGGTCTTACATGG
66 GACATTGCCTTGGCATGGTCTTACATGG
36466673 TATCCTTAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 46 0.57
109 10 0.12
110 23 0.29
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGCCTGACATGGTATCATTGCCTTAGAAACCTCACCAAT
GACATTGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:36466673 original size:55 final size:52
Alignment explanation
Indices: 36466425--36466679 Score: 223
Period size: 55 Copynumber: 4.8 Consensus size: 52
36466415 ACATGGATAC
* * **
36466425 CTTACCATTGCCATGACTTCTCATGGTCTTACATGGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AA
* * * * * *
36466474 CTTACCATTGCCATGTCTCGACATGGCCTTACATGGTATCATTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA-GAA
* *
36466527 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCC-T-TAG-AA
* * * * *
36466582 CTTATCAATGCCATGTCTTGACATGGTCTGACATGGTGTCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AA
**
36466635 CCTTACCAATTACATTGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATGCCA-TGCCTTGGCATGGTCTTACATGGTATCCTT
36466680 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 29, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
49 37 0.22
52 3 0.02
53 43 0.26
54 14 0.08
55 66 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (52 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAA
Found at i:36467909 original size:12 final size:12
Alignment explanation
Indices: 36467892--36467916 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36467882 GTTACAACAC
36467892 GAGCTAAGACAT
1 GAGCTAAGACAT
36467904 GAGCTAAGACAT
1 GAGCTAAGACAT
36467916 G
1 G
36467917 GGCGTGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (12 bp):
GAGCTAAGACAT
Found at i:36477080 original size:23 final size:23
Alignment explanation
Indices: 36477031--36477080 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
36477021 ACCCCATGCA
*
36477031 ATGCAACATAATATCATACATGG
1 ATGCAACACAATATCATACATGG
36477054 ATGCAACACACATAT-A-ACATGG
1 ATGCAACACA-ATATCATACATGG
36477076 CATGC
1 -ATGC
36477081 TCAAATACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.25
23 14 0.58
24 4 0.17
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (23 bp):
ATGCAACACAATATCATACATGG
Found at i:36477165 original size:27 final size:26
Alignment explanation
Indices: 36477143--36477204 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
36477133 GATATTACAG
36477143 TCATTTTACCCTACAGGGGTATTCGA
1 TCATTTTACCCTACAGGGGTATTCGA
* **
36477169 TCATTCTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTACAGGGGTA-TTCGA
36477196 TCATTTTAC
1 TCATTTTAC
36477205 TCTATGAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 18 0.58
27 13 0.42
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGGTATTCGA
Found at i:36477209 original size:27 final size:27
Alignment explanation
Indices: 36477143--36477228 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
36477133 GATATTACAG
**
36477143 TCATTTTACCCTACAGGGGTA-TTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
36477169 TCATTCTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
36477196 TCATTTTACTCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
36477223 TAATTT
1 TCATTT
36477229 GATCACATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
26 18 0.35
27 34 0.65
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGA
Found at i:36477241 original size:27 final size:27
Alignment explanation
Indices: 36477185--36477241 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
36477175 TACCCTATGG
* * * *
36477185 GGGTATTTCGATCATTTTACTCTATGA
1 GGGTATTTCGATAATTTGACTCCATAA
36477212 GGGTATTTCGATAATTTGA-TCACATAA
1 GGGTATTTCGATAATTTGACTC-CATAA
36477239 GGG
1 GGG
36477242 CAAAATTATC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTGACTCCATAA
Found at i:36477255 original size:27 final size:27
Alignment explanation
Indices: 36477225--36477344 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
36477215 TATTTCGATA
* *
36477225 ATTTGATCACATAAGGGCAAAATTATC
1 ATTTTATCACATAAGGGCAAAATTGTC
* *
36477252 ATTTTATCACATAAGAGCAAAATAGTC
1 ATTTTATCACATAAGGGCAAAATTGTC
* * *
36477279 ATTTTATCACATAAGGACTAAATGGTC
1 ATTTTATCACATAAGGGCAAAATTGTC
** * *
36477306 ATTCAATCACATAAGGGTAAAATCGTC
1 ATTTTATCACATAAGGGCAAAATTGTC
36477333 ATTTTATCACAT
1 ATTTTATCACAT
36477345 GTCATTTTAT
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (27 bp):
ATTTTATCACATAAGGGCAAAATTGTC
Found at i:36477290 original size:54 final size:54
Alignment explanation
Indices: 36477225--36477553 Score: 376
Period size: 54 Copynumber: 6.3 Consensus size: 54
36477215 TATTTCGATA
* ** * * *
36477225 ATTTGATCACATAAGGGCAAAATTATCATTTTATCACATAAGAGCAAAATAGTC
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* * * **
36477279 ATTTTATCACATAAGGACTAAATGGTCATTCAATCACATAAGGGTAAAATCGTC
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* *
36477333 ATTTTAT--C---A---C---AT-GTCATTTTATCACATAAGGGCAAAATCTTC
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* * *
36477375 ATTTTATCACATAAGGGCAAAATCGTCATTTTATTATATAAGGGTAAAATAGTC
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* *
36477429 ATTTTATCACATAAGGGCGAAATCGTCATTTTATCACATAAGGGTAAAATTGTC
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* * *
36477483 ATTTTATGACATAAGGGCAAAATCGTCATTTTATCACATAAGAGAAAAATCGTC
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
*
36477537 ATTTTATCACATGAGGG
1 ATTTTATCACATAAGGG
36477554 TTCAGGTATG
Statistics
Matches: 233, Mismatches: 30, Indels: 24
0.81 0.10 0.08
Matches are distributed among these distances:
42 33 0.14
43 2 0.01
44 1 0.00
46 1 0.00
47 1 0.00
49 1 0.00
50 1 0.00
52 1 0.00
53 2 0.01
54 190 0.82
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (54 bp):
ATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
Found at i:36477328 original size:81 final size:80
Alignment explanation
Indices: 36477225--36477553 Score: 365
Period size: 81 Copynumber: 4.2 Consensus size: 80
36477215 TATTTCGATA
* **
36477225 ATTTGATCACATAAGGGCAAAATTATCATTTTATCACATAAGAGCAAAATAGTCATTTTATCACA
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTAT-ACATAAGAGCAAAATAGTCATTTTATCACA
* * *
36477290 TAAGGACTAAATGGTC
65 TAAGGGCAAAATCGTC
** *
36477306 ATTCAATCACATAAGGGTAAAATCGTCATTTTAT-C-----A-C---AT-GTCATTTTATCACAT
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTATACATAAGAGCAAAATAGTCATTTTATCACAT
*
36477360 AAGGGCAAAATCTTC
66 AAGGGCAAAATCGTC
* * *
36477375 ATTTTATCACATAAGGGCAAAATCGTCATTTTATTATATAAGGGTAAAATAGTCATTTTATCACA
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTA-TACATAAGAGCAAAATAGTCATTTTATCACA
*
36477440 TAAGGGCGAAATCGTC
65 TAAGGGCAAAATCGTC
* * * *
36477456 ATTTTATCACATAAGGGTAAAATTGTCATTTTATGACATAAGGGCAAAATCGTCATTTTATCACA
1 ATTTTATCACATAAGGGCAAAATCGTCATTTTAT-ACATAAGAGCAAAATAGTCATTTTATCACA
* *
36477521 TAAGAGAAAAATCGTC
65 TAAGGGCAAAATCGTC
*
36477537 ATTTTATCACATGAGGG
1 ATTTTATCACATAAGGG
36477554 TTCAGGTATG
Statistics
Matches: 209, Mismatches: 26, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
69 56 0.27
70 3 0.01
73 1 0.00
74 1 0.00
79 1 0.00
80 3 0.01
81 144 0.69
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (80 bp):
ATTTTATCACATAAGGGCAAAATCGTCATTTTATACATAAGAGCAAAATAGTCATTTTATCACAT
AAGGGCAAAATCGTC
Found at i:36477350 original size:15 final size:15
Alignment explanation
Indices: 36477330--36477359 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36477320 GGGTAAAATC
36477330 GTCATTTTATCACAT
1 GTCATTTTATCACAT
36477345 GTCATTTTATCACAT
1 GTCATTTTATCACAT
36477360 AAGGGCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (15 bp):
GTCATTTTATCACAT
Found at i:36477384 original size:27 final size:27
Alignment explanation
Indices: 36477345--36477553 Score: 310
Period size: 27 Copynumber: 7.7 Consensus size: 27
36477335 TTTATCACAT
36477345 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
36477372 TTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * * *
36477399 GTCATTTTATTATATAAGGGTAAAATA
1 GTCATTTTATCACATAAGGGCAAAATC
*
36477426 GTCATTTTATCACATAAGGGCGAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
36477453 GTCATTTTATCACATAAGGGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
36477480 GTCATTTTATGACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
36477507 GTCATTTTATCACATAAGAGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
36477534 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
36477554 TTCAGGTATG
Statistics
Matches: 160, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:36477467 original size:150 final size:150
Alignment explanation
Indices: 36477225--36477494 Score: 414
Period size: 150 Copynumber: 1.8 Consensus size: 150
36477215 TATTTCGATA
*
36477225 ATTTGATCACATAAGGGCAAAATTATCATTTTATCACATAAGAGCAAAATAGTCATTTTATCACA
1 ATTTGATCACATAAGGGCAAAATCATCATTTTATCACATAAGAGCAAAATAGTCATTTTATCACA
* *
36477290 TAAGGACTAAATGGTCATTCAATCACATAAGGGTAAAATCGTCATTTTATCACATGTCATTTTAT
66 TAAGGACGAAATCGTCATTCAATCACATAAGGGTAAAATCGTCATTTTATCACATGTCATTTTAT
36477355 CACATAAGGGCAAAATCTTC
131 CACATAAGGGCAAAATCTTC
* * * * * *
36477375 ATTTTATCACATAAGGGCAAAATCGTCATTTTATTATATAAGGGTAAAATAGTCATTTTATCACA
1 ATTTGATCACATAAGGGCAAAATCATCATTTTATCACATAAGAGCAAAATAGTCATTTTATCACA
* ** * *
36477440 TAAGGGCGAAATCGTCATTTTATCACATAAGGGTAAAATTGTCATTTTATGACAT
66 TAAGGACGAAATCGTCATTCAATCACATAAGGGTAAAATCGTCATTTTATCACAT
36477495 AAGGGCAAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
150 106 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.34
Consensus pattern (150 bp):
ATTTGATCACATAAGGGCAAAATCATCATTTTATCACATAAGAGCAAAATAGTCATTTTATCACA
TAAGGACGAAATCGTCATTCAATCACATAAGGGTAAAATCGTCATTTTATCACATGTCATTTTAT
CACATAAGGGCAAAATCTTC
Found at i:36478520 original size:13 final size:13
Alignment explanation
Indices: 36478502--36478526 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36478492 GAATAACCAC
36478502 AGAAACGAAGGAT
1 AGAAACGAAGGAT
36478515 AGAAACGAAGGA
1 AGAAACGAAGGA
36478527 AAAGTCAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.32, T:0.04
Consensus pattern (13 bp):
AGAAACGAAGGAT
Found at i:36480535 original size:37 final size:37
Alignment explanation
Indices: 36480469--36480555 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 37
36480459 ACATTGATAT
*
36480469 TCCAACCGA-AACACACTAGATACTTATAAGAGCTAA
1 TCCACCCGATAACACACTAGATACTTATAAGAGCTAA
* * * *
36480505 TCCACCCGATAACACGCTAGAT-GTTCATAAGAGTTAG
1 TCCACCCGATAACACACTAGATACTT-ATAAGAGCTAA
*
36480542 TCCACCTGATAACA
1 TCCACCCGATAACA
36480556 TACCAATGGC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
36 10 0.23
37 33 0.77
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (37 bp):
TCCACCCGATAACACACTAGATACTTATAAGAGCTAA
Found at i:36481987 original size:21 final size:20
Alignment explanation
Indices: 36481955--36481995 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
36481945 ATACATCAAT
36481955 ATTTTGATGTTTAATGATAG
1 ATTTTGATGTTTAATGATAG
*
36481975 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTAATGATAG
36481996 TTATACAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTAATGATAG
Found at i:36488014 original size:43 final size:43
Alignment explanation
Indices: 36487953--36488146 Score: 307
Period size: 43 Copynumber: 4.5 Consensus size: 43
36487943 CCGGCATTAC
* *
36487953 GCCTGCTAGGCACGAAGGCCTGAATACACATCACAGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
36487996 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
36488039 GCCTGCTAGGCACAAAGGCCCAAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
36488082 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
36488125 ACCTGCTAGGCACGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCG
36488147 TATATAATAC
Statistics
Matches: 140, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 140 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:36506525 original size:21 final size:20
Alignment explanation
Indices: 36506486--36506526 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
36506476 ATACATCAGT
36506486 ATTTTGATGTTTAATGATAG
1 ATTTTGATGTTTAATGATAG
* *
36506506 ATTTTGAATTTTTGATGATAG
1 ATTTTG-ATGTTTAATGATAG
36506527 TTATACAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (20 bp):
ATTTTGATGTTTAATGATAG
Found at i:36514501 original size:92 final size:91
Alignment explanation
Indices: 36514337--36514608 Score: 268
Period size: 92 Copynumber: 2.9 Consensus size: 91
36514327 TTAAGTTACC
* * * * *
36514337 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTGTATAAGTGCTGATG-CATGTCCCAG
1 GATG-CATGTCCCAGACA-CGTCTTACACTAGC-CCT-CGT-CAA-TGCCGATGCCATGTCCCAG
* *
36514401 ACATGTCTTACACTAGC-ATGA-AGCT-TAGCT
60 ACATGTCTTACACTAGCTATCATA-ATGTAGCT
* *
36514431 GATGCATGTCCCAGACACGTCTTACACTGGCACTCATC-TCTAA-GCCGATGCCATCTCCCAGAC
1 GATGCATGTCCCAGACACGTCTTACACTAGC-C-C-TCGTC-AATGCCGATGCCATGTCCCAGAC
* *
36514494 ATAGTCTTACATTGGCTATCATAATGTAGCT
62 AT-GTCTTACACTAGCTATCATAATGTAGCT
*
36514525 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCAATGCCGATGCCATGTCCCAGACATGG
1 GATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCAATGCCGATGCCATGTCCCAGACAT-G
*
36514590 TCTTACACTAGCTCTCATA
65 TCTTACACTAGCTATCATA
36514609 TAACCCAATG
Statistics
Matches: 149, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
90 6 0.04
91 17 0.11
92 68 0.46
93 18 0.12
94 40 0.27
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (91 bp):
GATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCAATGCCGATGCCATGTCCCAGACATGT
CTTACACTAGCTATCATAATGTAGCT
Found at i:36514529 original size:48 final size:45
Alignment explanation
Indices: 36514384--36514609 Score: 192
Period size: 44 Copynumber: 4.9 Consensus size: 45
36514374 GTGTATAAGT
* * *
36514384 GCTGATGCATGTCCCAGACATGTCTTACACTAGCA-TGA-AGCTTA
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATC-TA
* *
36514428 GCTGATGCATGTCCCAGACACGTCTTACACTGGCACTCATCTCTAA
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCT-A
* * * *
36514474 GCCGATGCCATCTCCCAGACATAGTCTTACATTGGCTA-TCATAATGTA
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCAT-ATCTA
* * * *
36514522 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTC--GTCAA
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTA
* * *
36514565 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
1 -GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAT
36514610 AACCCAATGT
Statistics
Matches: 147, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
43 2 0.01
44 39 0.27
45 17 0.12
46 37 0.25
47 25 0.17
48 24 0.16
49 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTA
Found at i:36514537 original size:94 final size:92
Alignment explanation
Indices: 36514426--36514596 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 92
36514416 GCATGAAGCT
*
36514426 TAGCTGATGCATGTCCCAGACACGTCTTACACTGGCACTCATC-TCTAA-GCCGATGCCATCTCC
1 TAGCTGATGCATGTCCCAGACACGTCTTACACTAGC-C-C-TCGTC-AATGCCGATGCCATCTCC
36514489 CAGACATAGTCTTACATTGGCTATCATAATG
62 CAGACATAGTCTTACATTGGCTATCATAATG
* *
36514520 TAGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCAATGCCGATGCCATGTCCCAGA
1 TAGCTGATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCAATGCCGATGCCATCTCCCAGA
*
36514585 CATGGTCTTACA
66 CATAGTCTTACA
36514597 CTAGCTCTCA
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
91 4 0.06
92 32 0.45
93 1 0.01
94 34 0.48
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
TAGCTGATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCAATGCCGATGCCATCTCCCAGA
CATAGTCTTACATTGGCTATCATAATG
Found at i:36528724 original size:13 final size:13
Alignment explanation
Indices: 36528706--36528730 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36528696 TAACCTACAA
36528706 AATTAAATAACAT
1 AATTAAATAACAT
36528719 AATTAAATAACA
1 AATTAAATAACA
36528731 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:36531153 original size:19 final size:20
Alignment explanation
Indices: 36531129--36531168 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
36531119 AATCTCATTT
36531129 TCTTTTCTTTGTTT-TTCTC
1 TCTTTTCTTTGTTTCTTCTC
36531148 TCTTTTCTTTGTTTCTTCTC
1 TCTTTTCTTTGTTTCTTCTC
36531168 T
1 T
36531169 TGATTTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.00, C:0.23, G:0.05, T:0.72
Consensus pattern (20 bp):
TCTTTTCTTTGTTTCTTCTC
Found at i:36532108 original size:43 final size:43
Alignment explanation
Indices: 36532061--36532146 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
36532051 AGAAAGATTG
36532061 AAGGTCGGAAAAAAAATGTAAACAAAAGAATAGATCTTGATCA
1 AAGGTCGGAAAAAAAATGTAAACAAAAGAATAGATCTTGATCA
*
36532104 AAGGTCGGAACAAAAATGTAAACAAAAGAATAGATCTTGATCA
1 AAGGTCGGAAAAAAAATGTAAACAAAAGAATAGATCTTGATCA
36532147 CACACTTTCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (43 bp):
AAGGTCGGAAAAAAAATGTAAACAAAAGAATAGATCTTGATCA
Found at i:36533394 original size:13 final size:13
Alignment explanation
Indices: 36533376--36533400 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36533366 TAACCTACAA
36533376 AATTAAATAACAT
1 AATTAAATAACAT
36533389 AATTAAATAACA
1 AATTAAATAACA
36533401 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:36541100 original size:13 final size:13
Alignment explanation
Indices: 36541078--36541128 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
36541068 TTTGGCAATA
*
36541078 CTTTTAAAAAGTG
1 CTTTTGAAAAGTG
36541091 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
36541104 -TTGTGGAGAAGTG
1 CTT-TTGAAAAGTG
36541117 CTTTTGAAAAGT
1 CTTTTGAAAAGT
36541129 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 2 0.06
13 27 0.87
14 2 0.06
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:36546878 original size:27 final size:26
Alignment explanation
Indices: 36546830--36546915 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 26
36546820 AGCATGGCTG
* * *
36546830 CCAGAACAAATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
36546856 CCAGATACAGATATTCTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
36546883 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
36546910 CCAGAA
1 CCAGAA
36546916 TACTTCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 12 0.23
27 41 0.77
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:36549199 original size:43 final size:43
Alignment explanation
Indices: 36549143--36549321 Score: 137
Period size: 43 Copynumber: 4.2 Consensus size: 43
36549133 CTTACATTTT
* * **
36549143 ATCACATATCGATGCCATTTTCCCAGACAGGGTCTTACACGAA
1 ATCACATAACGATGCCAATGCCCCAGACAGGGTCTTACACGAA
* * * *
36549186 ATCATATAACGATGTCAATGCCCCAGACATGGTCTTACACGTA
1 ATCACATAACGATGCCAATGCCCCAGACAGGGTCTTACACGAA
* * * * * * *
36549229 ATCACA-ATACAATGCCAATGTCCCAAACATGGTATTACATGTA
1 ATCACATA-ACGATGCCAATGCCCCAGACAGGGTCTTACACGAA
* * * * * *
36549272 ATCACA-ATACAATGCCAATGTCCCAAACATGGTCTTACATGTA
1 ATCACATA-ACGATGCCAATGCCCCAGACAGGGTCTTACACGAA
36549315 ATCACAT
1 ATCACAT
36549322 CTTGGTAACA
Statistics
Matches: 118, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 117 0.99
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (43 bp):
ATCACATAACGATGCCAATGCCCCAGACAGGGTCTTACACGAA
Found at i:36549253 original size:86 final size:87
Alignment explanation
Indices: 36549123--36549320 Score: 213
Period size: 86 Copynumber: 2.3 Consensus size: 87
36549113 TGCCATATCT
* * * * * * * *
36549123 CAGATATGGTCTTACATTTTATCAC-ATATCGATGCCATTTTCCCAGACAGGGTCTTACACGAAA
1 CAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAAACAGGGTATTACACGAAA
* * *
36549187 TCA-TATAACGATGTCAATGCCC
66 TCACAAT-ACAATGCCAATGCCC
* * * *
36549209 CAGACATGGTCTTACACGTAATCACAATA-CAATGCCAATGTCCCAAACATGGTATTACATGTAA
1 CAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAAACAGGGTATTACACGAAA
*
36549273 TCACAATACAATGCCAATGTCC
66 TCACAATACAATGCCAATGCCC
*
36549295 CAAACATGGTCTTACATGTAATCACA
1 CAGACATGGTCTTACATGTAATCACA
36549321 TCTTGGTAAC
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
86 87 0.95
87 5 0.05
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (87 bp):
CAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAAACAGGGTATTACACGAAA
TCACAATACAATGCCAATGCCC
Found at i:36556920 original size:43 final size:43
Alignment explanation
Indices: 36556896--36557062 Score: 271
Period size: 43 Copynumber: 3.9 Consensus size: 43
36556886 TCATATAATG
*
36556896 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
*
36556939 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
* *
36556982 ATTCCAATGTCCCAGACATAGTCTTACATGTAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
* * *
36557025 ATGCCAATGTCCCAGAAATGGTCTTACTTGAAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
36557063 TCTCGGTAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 114 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
Found at i:36558443 original size:12 final size:12
Alignment explanation
Indices: 36558406--36558437 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
36558396 CTTCTCCCCT
*
36558406 TTCCCCTTTCCC
1 TTCCTCTTTCCC
36558418 TTCCTCTTTCCC
1 TTCCTCTTTCCC
36558430 TTCCTCTT
1 TTCCTCTT
36558438 CTCCTTGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (12 bp):
TTCCTCTTTCCC
Found at i:36561222 original size:20 final size:19
Alignment explanation
Indices: 36561177--36561214 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
36561167 CATCCAAACA
36561177 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
*
36561196 CCAGAAAAGTAAATTATTT
1 CCAGAAAAGTAAATCATTT
36561215 TCCTGAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:36561250 original size:15 final size:14
Alignment explanation
Indices: 36561219--36561254 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
36561209 TTATTTTCCT
*
36561219 GAAATCATTTTCTG
1 GAAAACATTTTCTG
36561233 GAAAACATTTTACTG
1 GAAAACATTTT-CTG
36561248 GAAAACA
1 GAAAACA
36561255 AAGAGAGCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (14 bp):
GAAAACATTTTCTG
Found at i:36561569 original size:43 final size:43
Alignment explanation
Indices: 36561508--36561669 Score: 209
Period size: 43 Copynumber: 3.8 Consensus size: 43
36561498 CTACAATTCC
* * * *
36561508 ATGTCACAGATATGGTCTTACATGTTATCACATATCGATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCA
* * * *
36561551 ATGTCCCAAACATGGTCTTACACGAAATCATATAACGATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCA
* *
36561594 ATTTCCCAGACATGGTCTTACACGTAATCACA-ATACAATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAATCACATAT-CGATGCCA
*
36561637 ATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGTCCCAGACATGGTCTTACACGTAATCACAT
36561670 CTTAATAATC
Statistics
Matches: 101, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.01
43 100 0.99
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCA
Found at i:36578541 original size:40 final size:40
Alignment explanation
Indices: 36578467--36578687 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
36578457 AACCCAAGTA
* * *
36578467 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
36578506 CCTTCAGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
36578546 CCTTCGGGACTTAGCTCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
36578586 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAACA-G
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAA-ATG
*
36578626 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36578665 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36578688 CATCCGAATA
Statistics
Matches: 158, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 36 0.23
40 118 0.75
41 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36578599 original size:80 final size:79
Alignment explanation
Indices: 36578467--36578687 Score: 311
Period size: 80 Copynumber: 2.8 Consensus size: 79
36578457 AACCCAAGTA
* * * *
36578467 CCTTCGGGATTTAGCCAGATATAGCAACTCGCACAAATGCCTTCAGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
36578532 CACTAGCACAAAAG
66 CAATAGCACAAAAG
* *
36578546 CCTTCGGGACTTAGCTCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGC-CGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
36578611 TCAATAGCACAACAG
65 TCAATAGCACAAAAG
* *
36578626 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
36578688 CATCCGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 38 0.30
80 87 0.69
81 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAG
Found at i:36587016 original size:40 final size:40
Alignment explanation
Indices: 36586942--36587122 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
36586932 AACCCAAGTA
* * *
36586942 CCTTCGGGATTTAG-CCAGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
* *
36586981 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
36587021 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
36587061 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
36587100 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36587123 CATCCGAATA
Statistics
Matches: 127, Mismatches: 11, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 38 0.30
40 87 0.69
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:36587074 original size:80 final size:79
Alignment explanation
Indices: 36586942--36587122 Score: 292
Period size: 80 Copynumber: 2.3 Consensus size: 79
36586932 AACCCAAGTA
* * * *
36586942 CCTTCGGGATTTAG-CCAGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
36587006 TCACTAGCACAAAAG
66 TCACTAGCAC-AAAG
36587021 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
* *
36587086 TCACTAGCACCATG
66 TCACTAGCACAAAG
36587100 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36587123 CATCCGAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
79 38 0.40
80 57 0.60
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAAG
Found at i:36587139 original size:39 final size:38
Alignment explanation
Indices: 36587020--36587139 Score: 100
Period size: 39 Copynumber: 3.1 Consensus size: 38
36587010 TAGCACAAAA
* * * *
36587020 GCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAA-AC
1 GCCTTCGGGACTTAGCCCGGATAT--CATC-CGAATAACAT
* ** *
36587060 GCCTTCGGGACTTAGCCCGGATAT-AGTCACTAGCACCAT
1 GCCTTCGGGACTTAGCCCGGATATCA-TC-CGAATAACAT
36587099 GCCTTCGGGACTTAGCCCGGATATCATCCGAATAATCAT
1 GCCTTCGGGACTTAGCCCGGATATCATCCGAATAA-CAT
36587138 GC
1 GC
36587140 ACATATATCG
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
37 1 0.02
38 7 0.11
39 32 0.49
40 25 0.38
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.22
Consensus pattern (38 bp):
GCCTTCGGGACTTAGCCCGGATATCATCCGAATAACAT
Found at i:36593626 original size:8 final size:8
Alignment explanation
Indices: 36593615--36593639 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36593605 GATAGGGTTT
36593615 AGCTATTA
1 AGCTATTA
36593623 AGCTATTA
1 AGCTATTA
36593631 AGCTATTA
1 AGCTATTA
36593639 A
1 A
36593640 AACATGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (8 bp):
AGCTATTA
Found at i:36593782 original size:114 final size:114
Alignment explanation
Indices: 36593649--36593865 Score: 407
Period size: 114 Copynumber: 1.9 Consensus size: 114
36593639 AAACATGGAA
*
36593649 AAGTAAATAGAGTAAGCTATTAAGCTTAGTAAGCTCATATGTCTAATAAGTACAACTTACCAATC
1 AAGTAAATAGAGTAAGCTATTAAGCTTAGCAAGCTCATATGTCTAATAAGTACAACTTACCAATC
*
36593714 ATTCTCAATTTCAAGAAGCATAATTAAACATATATAAGCTATTAAACAT
66 ATTCTCAATTTAAAGAAGCATAATTAAACATATATAAGCTATTAAACAT
*
36593763 AAGTAAATAGAGTAAGCTATTATGCTTAGCAAGCTCATATGTCTAATAAGTACAACTTACCAATC
1 AAGTAAATAGAGTAAGCTATTAAGCTTAGCAAGCTCATATGTCTAATAAGTACAACTTACCAATC
36593828 ATTCTCAATTTAAAGAAGCATAATTAAACATATATAAG
66 ATTCTCAATTTAAAGAAGCATAATTAAACATATATAAG
36593866 TTTCAATCAG
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 100 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (114 bp):
AAGTAAATAGAGTAAGCTATTAAGCTTAGCAAGCTCATATGTCTAATAAGTACAACTTACCAATC
ATTCTCAATTTAAAGAAGCATAATTAAACATATATAAGCTATTAAACAT
Found at i:36597650 original size:14 final size:16
Alignment explanation
Indices: 36597631--36597680 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
36597621 CAAAGATAAC
36597631 AAGAAAAT-C-GAATA
1 AAGAAAATCCAGAATA
36597645 AAG-AAATCCAGAATA
1 AAGAAAATCCAGAATA
* *
36597660 AAG-AGATCCAGGATA
1 AAGAAAATCCAGAATA
36597675 AAGAAA
1 AAGAAA
36597681 CCTAAGATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 4 0.13
14 4 0.13
15 21 0.70
16 1 0.03
ACGTcount: A:0.60, C:0.10, G:0.18, T:0.12
Consensus pattern (16 bp):
AAGAAAATCCAGAATA
Found at i:36597660 original size:15 final size:15
Alignment explanation
Indices: 36597640--36597680 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
36597630 CAAGAAAATC
36597640 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
36597655 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
36597670 GGATAAAGAAA
1 GAATAAAGAAA
36597681 CCTAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:36600674 original size:47 final size:49
Alignment explanation
Indices: 36600552--36600730 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 49
36600542 TGTAACCCGC
*
36600552 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GG--G-C-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGATGCCAGTT-ACAT
* *
36600598 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* *
36600648 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
36600691 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
36600731 TCAACCATCC
Statistics
Matches: 113, Mismatches: 8, Indels: 21
0.80 0.06 0.15
Matches are distributed among these distances:
43 7 0.06
44 2 0.02
45 4 0.04
46 60 0.53
47 29 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:36600718 original size:93 final size:93
Alignment explanation
Indices: 36600559--36600730 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
36600549 CGCCCATAAG
* * * *
36600559 CGAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTTGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
36600624 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36600652 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTTACATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTT-GGACATTCACATCCATAAGTGAACTCGGACTCAACTC
36600716 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
36600731 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTTGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36603105 original size:51 final size:51
Alignment explanation
Indices: 36603050--36603197 Score: 226
Period size: 51 Copynumber: 2.9 Consensus size: 51
36603040 TGAACCTTAG
36603050 GAATAAAATAGCTTTGGGCACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGGCACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
36603101 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTTT
1 GAATAAAATAGCTTTGGGCACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
36603152 GAATAAAATAGC-TTGGGCTACAAGGGTGGTATTGTGTGAAGGCCAC
1 GAATAAAATAGCTTTGGGC-ACAAGTGTGGTACTATGTGAAGGCCAC
36603198 CATGTATCCG
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 5 0.06
51 83 0.94
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGGCACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:36608525 original size:39 final size:39
Alignment explanation
Indices: 36608469--36608594 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
36608459 TTCAGTGATG
36608469 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
36608508 TTTATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * ** *
36608547 TATATCCAGACTTAAGGTCCATAGGCTATGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
36608586 TATGTCCGG
1 TATATCCGG
36608595 GCTAAAGACC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:36608612 original size:39 final size:39
Alignment explanation
Indices: 36608469--36608632 Score: 186
Period size: 39 Copynumber: 4.2 Consensus size: 39
36608459 TTCAGTGATG
*
36608469 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
36608508 TTTATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* ** *
36608547 TATATCCAGACTTAAGGTCCATAGGCTATGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * ** * * *
36608586 TATGTCCGGGCTAAAGACCCGCAGGCTTTGAGCTGGTAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
36608625 TATA-CCGG
1 TATATCCGG
36608633 GTTTAAATTC
Statistics
Matches: 105, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
38 4 0.04
39 101 0.96
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:36616209 original size:38 final size:38
Alignment explanation
Indices: 36616144--36616456 Score: 394
Period size: 38 Copynumber: 8.2 Consensus size: 38
36616134 GGCTCAAAGG
* * * *
36616144 CCCAAATATAATACCATCACTAGGCCTGCGGGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
36616182 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** *
36616220 CCCAGATATATTACCAATACGAAGCCTACGGGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * * *
36616258 CCCGGATATATTACTAACACGAAGCCTGCGGGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
36616296 CCCAGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
36616334 CCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * * *
36616372 TCC-GAATATATTACTAGCACGAAGCTTGCGGGATTTAA
1 CCCAG-ATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** *
36616410 CCCGGATATTTTACCAGCACGAAGCCTGCGAGATTTAA
1 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
36616448 CCCGGATAT
1 CCCAGATAT
36616457 CATATTTCGA
Statistics
Matches: 243, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
37 1 0.00
38 241 0.99
39 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:36616349 original size:114 final size:114
Alignment explanation
Indices: 36616167--36616456 Score: 445
Period size: 114 Copynumber: 2.5 Consensus size: 114
36616157 CCATCACTAG
* *
36616167 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATATT
1 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
36616232 ACCAATACGAAGCCTACGGGATTTAACCCGGATATATTACTAACACGAA
66 ACCAACACAAAGCCTACGGGATTTAACCCGAATATATTACTAACACGAA
*
36616281 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGTGGGATTTAACCCGGATATAAT
1 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
36616346 ACCAGCACAAAGCCTGCGGGATTTAATCCGAATATATTACTAGCACGAA
66 ACCAACACAAAGCCTACGGGATTTAACCCGAATATATTACTAACACGAA
* * ** *
36616395 GCTTGCGGGATTTAACCCGGATATTTTACCAGCACGAAGCCTGCGAGATTTAACCCGGATAT
1 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36616457 CATATTTCGA
Statistics
Matches: 160, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 160 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (114 bp):
GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
ACCAACACAAAGCCTACGGGATTTAACCCGAATATATTACTAACACGAA
Found at i:36619145 original size:25 final size:25
Alignment explanation
Indices: 36619116--36619163 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36619106 TTATAATATG
* * *
36619116 AAAATGACCGTTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36619141 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36619164 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36619214 original size:9 final size:9
Alignment explanation
Indices: 36619202--36619278 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
36619192 TTTGATAAAC
36619202 ATGATATGT
1 ATGATATGT
*
36619211 ATGATATGCAC
1 ATGATATG--T
36619222 ATGATATGT
1 ATGATATGT
*
36619231 ATGATATGCAG
1 ATGATATG--T
*
36619242 ATGACATGT
1 ATGATATGT
*
36619251 ATGATATGCAC
1 ATGATATG--T
36619262 ATGATATGT
1 ATGATATGT
36619271 ATGATATG
1 ATGATATG
36619279 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:36619227 original size:11 final size:11
Alignment explanation
Indices: 36619211--36619282 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
36619201 CATGATATGT
36619211 ATGATATGCAC
1 ATGATATGCAC
*
36619222 ATGATATG--T
1 ATGATATGCAC
*
36619231 ATGATATGCAG
1 ATGATATGCAC
* *
36619242 ATGACATG--T
1 ATGATATGCAC
36619251 ATGATATGCAC
1 ATGATATGCAC
*
36619262 ATGATATG--T
1 ATGATATGCAC
36619271 ATGATATGCAC
1 ATGATATGCAC
36619282 A
1 A
36619283 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:36619290 original size:20 final size:20
Alignment explanation
Indices: 36619200--36619282 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
36619190 ATTTTGATAA
36619200 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36619220 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
36619240 AGATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
36619260 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36619280 ACA
1 ACA
36619283 CGAGATGTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36619473 original size:25 final size:24
Alignment explanation
Indices: 36619335--36619477 Score: 204
Period size: 23 Copynumber: 6.0 Consensus size: 24
36619325 GAGGAAGTGC
*
36619335 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36619359 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36619383 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36619406 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36619429 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
36619454 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36619478 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 2, Indels: 11
0.90 0.02 0.09
Matches are distributed among these distances:
23 52 0.47
24 29 0.26
25 21 0.19
26 9 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36619705 original size:31 final size:31
Alignment explanation
Indices: 36619670--36619733 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36619660 CGTTTACCGT
36619670 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
36619701 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36619732 AA
1 AA
36619734 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36621824 original size:48 final size:47
Alignment explanation
Indices: 36621759--36621866 Score: 128
Period size: 48 Copynumber: 2.2 Consensus size: 47
36621749 CCATAGTCCA
* *
36621759 AATATGGTCTTATACTAGCTCTGCTCT-GCCCGTGCTGATGCCTATTCCC
1 AATA-GGTCTTATACTAGCACT-CACTAGCCCGTGCTGATGCCTA-TCCC
* * *
36621808 AATAGGTTTTATACTAGCACTCACTAGGCTGTGCTGATGCCTATCCC
1 AATAGGTCTTATACTAGCACTCACTAGCCCGTGCTGATGCCTATCCC
36621855 AGATAGGTCTTA
1 A-ATAGGTCTTA
36621867 CGCTTACCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
47 8 0.16
48 39 0.76
49 4 0.08
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (47 bp):
AATAGGTCTTATACTAGCACTCACTAGCCCGTGCTGATGCCTATCCC
Found at i:36623445 original size:114 final size:113
Alignment explanation
Indices: 36623246--36623475 Score: 316
Period size: 114 Copynumber: 2.0 Consensus size: 113
36623236 AAGGCTCGAT
* * * * * * * * *
36623246 TATAATACCAGTACTAGGCCTATGGGTTTAAGCCGGATATAATACCAGCACGAAGCCTGCGGGAT
1 TATAATACCAGCACGAAGCCTAAGGATTTAACCCAGATATAATACCAGCACGAAGCCTACGGAAT
* * *
36623311 TTAACCTAGATATATTACCAGCACGAAGCCTGCGGTATTTAACCCGGA
66 CTAACCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
*
36623359 TATAATACCAGCACGAAGCCTACAGGATTTAACCCAGATATATTACCAGCACGAAGCCTACGGAA
1 TATAATACCAGCACGAAGCCTA-AGGATTTAACCCAGATATAATACCAGCACGAAGCCTACGGAA
* *
36623424 TCTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACTCGGA
65 TCTAACCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
36623473 TAT
1 TAT
36623476 CATATTTCGA
Statistics
Matches: 101, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
113 19 0.19
114 82 0.81
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (113 bp):
TATAATACCAGCACGAAGCCTAAGGATTTAACCCAGATATAATACCAGCACGAAGCCTACGGAAT
CTAACCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
Found at i:36623473 original size:38 final size:38
Alignment explanation
Indices: 36623272--36623475 Score: 291
Period size: 38 Copynumber: 5.4 Consensus size: 38
36623262 GGCCTATGGG
* *
36623272 TTTAAGCCGGATATAATACCAGCACGAAGCCTGCGGGA
1 TTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
** *
36623310 TTTAACCTAGATATATTACCAGCACGAAGCCTGCGGTA
1 TTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
* * *
36623348 TTTAACCCGGATATAATACCAGCACGAAGCCTACAGGA
1 TTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
* * *
36623386 TTTAACCCAGATATATTACCAGCACGAAGCCTACGGAA
1 TTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
*
36623424 TCTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
1 TTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
*
36623462 TTTAACTCGGATAT
1 TTTAACCCGGATAT
36623476 CATATTTCGA
Statistics
Matches: 145, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 145 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (38 bp):
TTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
Found at i:36645251 original size:47 final size:47
Alignment explanation
Indices: 36645199--36645837 Score: 1084
Period size: 47 Copynumber: 13.6 Consensus size: 47
36645189 GATAATTGTG
* *
36645199 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36645246 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36645293 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36645339 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36645386 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36645433 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36645482 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36645528 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36645575 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36645622 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36645671 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36645718 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
36645765 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36645812 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36645838 TCCCGAAGGG
Statistics
Matches: 565, Mismatches: 21, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 91 0.16
47 380 0.67
49 94 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36645483 original size:189 final size:189
Alignment explanation
Indices: 36645199--36645837 Score: 1115
Period size: 189 Copynumber: 3.4 Consensus size: 189
36645189 GATAATTGTG
* *
36645199 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36645262 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
36645327 GCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
131 GCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
36645386 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36645451 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
36645516 GCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
131 GCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
36645575 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36645640 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
36645705 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
131 GCC-ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
* * * * * * *
36645765 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36645828 ATGTGATAAG
66 ATGTGATAAG
36645838 TCCCGAAGGG
Statistics
Matches: 434, Mismatches: 15, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
187 56 0.13
188 10 0.02
189 260 0.60
190 108 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (189 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
Found at i:36645576 original size:236 final size:238
Alignment explanation
Indices: 36645199--36645837 Score: 1139
Period size: 236 Copynumber: 2.7 Consensus size: 238
36645189 GATAATTGTG
36645199 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
36645262 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
36645327 GCC-ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTG
131 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTG
36645391 AAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 AAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36645433 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
36645498 ATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
36645562 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
131 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTG
36645627 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 AAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36645671 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
36645734 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * *
36645799 GCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36645838 TCCCGAAGGG
Statistics
Matches: 390, Mismatches: 9, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
234 5 0.01
235 48 0.12
236 214 0.55
237 76 0.19
238 47 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (238 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTG
AAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36648032 original size:38 final size:38
Alignment explanation
Indices: 36647968--36648042 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
36647958 AATCCGAGTT
*
36647968 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
36648006 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
36648043 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:36648157 original size:40 final size:40
Alignment explanation
Indices: 36648096--36648375 Score: 411
Period size: 40 Copynumber: 7.0 Consensus size: 40
36648086 AGGTCTCGAC
*
36648096 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
36648135 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
36648175 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
36648215 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
36648254 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
36648294 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
36648334 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
36648374 GA
1 GA
36648376 CGTGTATTCG
Statistics
Matches: 219, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 42 0.19
40 177 0.81
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:36648325 original size:119 final size:120
Alignment explanation
Indices: 36648096--36648375 Score: 420
Period size: 119 Copynumber: 2.4 Consensus size: 120
36648086 AGGTCTCGAC
*
36648096 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGACTAAGTCCCGAAG
* **
36648160 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
66 AGCATTCATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGT
* * *
36648215 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGACTAAGTCCCGAAG
* * *
36648279 AGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
66 AGCATTCATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGT
* * * *
36648334 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
36648376 CGTGTATTCG
Statistics
Matches: 144, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
119 110 0.76
120 34 0.24
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGACTAAGTCCCGAAG
AGCATTCATGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGT
Found at i:36651846 original size:47 final size:47
Alignment explanation
Indices: 36651794--36652246 Score: 753
Period size: 47 Copynumber: 9.6 Consensus size: 47
36651784 GATAATTGTG
* *
36651794 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36651841 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36651888 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36651937 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36651984 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36652031 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36652080 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36652127 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
36652174 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36652221 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36652247 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 290 0.76
49 94 0.24
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36651901 original size:96 final size:94
Alignment explanation
Indices: 36651794--36652246 Score: 753
Period size: 96 Copynumber: 4.8 Consensus size: 94
36651784 GATAATTGTG
* *
36651794 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36651859 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
36651888 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36651953 ATGTGATAAGGCCTAATGGCCAATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
36651984 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
36652049 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36652080 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36652145 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
36652174 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36652239 GTGATAAG
66 GTGATAAG
36652247 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 16, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
94 154 0.45
96 185 0.55
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36651943 original size:143 final size:143
Alignment explanation
Indices: 36651794--36652246 Score: 775
Period size: 143 Copynumber: 3.2 Consensus size: 143
36651784 GATAATTGTG
* *
36651794 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36651859 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
36651924 GCCGATGTGATGA
131 GCCGATGTGATGA
*
36651937 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36652002 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
36652067 GCCGATGTGATGA
131 GCCGATGTGATGA
*
36652080 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
36652145 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
* * *
36652208 GCCAACGTGATGG
131 GCCGATGTGATGA
*
36652221 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36652247 TCCCGAAGGG
Statistics
Matches: 296, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 54 0.18
143 242 0.82
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:36654069 original size:43 final size:40
Alignment explanation
Indices: 36654009--36654121 Score: 111
Period size: 41 Copynumber: 2.7 Consensus size: 40
36653999 ATATCAAACA
* ** *
36654009 ATGCCAATGTCCCAGACATGGTCTTACATTCTATCTCATAT-CG
1 ATGCC-ATGTCCTAGACATGGTCTTACA--C-AAATCAAATGCG
*
36654052 ATGCCACTGTCCTAGACAGGGTCTTACACAAATCAAATGCG
1 ATGCCA-TGTCCTAGACATGGTCTTACACAAATCAAATGCG
*
36654093 AAGCCGATGTCCTAGACATGGTCTTACAC
1 ATGCC-ATGTCCTAGACATGGTCTTACAC
36654122 GTAACCATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
40 6 0.10
41 28 0.47
42 2 0.03
43 24 0.40
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (40 bp):
ATGCCATGTCCTAGACATGGTCTTACACAAATCAAATGCG
Found at i:36665658 original size:43 final size:43
Alignment explanation
Indices: 36665514--36665755 Score: 154
Period size: 43 Copynumber: 5.7 Consensus size: 43
36665504 TGTATTTTCG
* * * * *
36665514 TGTAAGACCACATCTGGGACGTTGGCATCGA-ATTATAGTTTACA
1 TGTAAGAACACGTCTAGGACATTGGCATCGATATT-T-GATTACA
* * * * * * * *
36665558 TGTAAGACCACATCTGGGACATTGACATTG-TACTTGATTTCG
1 TGTAAGAACACGTCTAGGACATTGGCATCGATATTTGATTACA
* *
36665600 TGTAAG-ACCCTGTCTAGGACACTGGCATCGATATTTGATTACA
1 TGTAAGAACAC-GTCTAGGACATTGGCATCGATATTTGATTACA
* * * * *
36665643 TGTAAGAACACGTCTAGGACGTTGGCATTG-TACTTGATTTCG
1 TGTAAGAACACGTCTAGGACATTGGCATCGATATTTGATTACA
** * * *
36665685 TGTAA-AACTGTGTCTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGAAC-ACGTCTAGGACATTGGCATCGATATTTGATTACA
* *
36665728 TGTAAGACCACGTCT-GGCACGTTGGCAT
1 TGTAAGAACACGTCTAGG-ACATTGGCAT
36665756 TGTACAAGAT
Statistics
Matches: 150, Mismatches: 40, Indels: 17
0.72 0.19 0.08
Matches are distributed among these distances:
41 5 0.03
42 54 0.36
43 57 0.38
44 34 0.23
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGAACACGTCTAGGACATTGGCATCGATATTTGATTACA
Found at i:36665678 original size:85 final size:84
Alignment explanation
Indices: 36665509--36665760 Score: 310
Period size: 85 Copynumber: 3.0 Consensus size: 84
36665499 TGATATGTAT
* ** * *
36665509 TTTCGTGTAAGACCAC-ATCTGGGACGTTGGCATCGA-ATTATAGTTTACATGTAAGACCACATC
1 TTTCGTGTAAGACC-CTGTCTGGGACACTGGCATCGATATT-T-GATTACATGTAAGACCACGTC
* *
36665572 TGGGACATTGACATTGTACTTGA
63 T-GGACGTTGGCATTGTACTTGA
* *
36665595 TTTCGTGTAAGACCCTGTCTAGGACACTGGCATCGATATTTGATTACATGTAAGAACACGTCTAG
1 TTTCGTGTAAGACCCTGTCTGGGACACTGGCATCGATATTTGATTACATGTAAGACCACGTCT-G
36665660 GACGTTGGCATTGTACTTGA
65 GACGTTGGCATTGTACTTGA
* ** * *
36665680 TTTCGTGTAAAACTGTGTCTGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGG
1 TTTCGTGTAAGACCCTGTCTGGGACACTGGCATCGATATTTGATTACATGTAAGACCACGTCTGG
36665745 CACGTTGGCATTGTAC
66 -ACGTTGGCATTGTAC
36665761 AAGATTTCTG
Statistics
Matches: 146, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
84 2 0.01
85 110 0.75
86 31 0.21
87 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (84 bp):
TTTCGTGTAAGACCCTGTCTGGGACACTGGCATCGATATTTGATTACATGTAAGACCACGTCTGG
ACGTTGGCATTGTACTTGA
Found at i:36671192 original size:47 final size:47
Alignment explanation
Indices: 36671035--36671206 Score: 167
Period size: 44 Copynumber: 3.7 Consensus size: 47
36671025 TATACATGCT
* * * *
36671035 GATGCATGTCCCAGACATGTCTTACCCTAGCAC-AACTC--TTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCA-TCAATGAGGCC
* * **
36671079 GATGCGTGTCCCAGACATGTCTTACATTGGCTA-TCATCGTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCAATGAGGCC
* * *
36671126 GATGCCATGTCCCAAACATGGTCTTATACTGGCACTCAT-AATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCAATGAGGCC
36671174 GATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
36671207 ACAAGAAATC
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
44 29 0.28
45 2 0.02
46 16 0.15
47 20 0.19
48 23 0.22
49 15 0.14
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCAATGAGGCC
Done.