Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 109 of 343
Found at i:36677155 original size:68 final size:68
Alignment explanation
Indices: 36677063--36677220 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 68
36677053 TTCACTTGGA
* *
36677063 ATCACTCATGCGACCTAGCTACATTTATCTCTCACATAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACATAGCTCTCTTGTCTACATGGGATACATCC
36677128 CGT
66 CGT
**
36677131 ATCACACATGTGACCTAGCTACATTTATCTCTCATGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACATAGCTCTCTTGTCTACATGGGATACATCC
36677196 CGT
66 CGT
36677199 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
36677221 TATATAGTAT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACATAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:36677253 original size:68 final size:67
Alignment explanation
Indices: 36677063--36677246 Score: 246
Period size: 68 Copynumber: 2.7 Consensus size: 67
36677053 TTCACTTGGA
* * * * *
36677063 ATCACTCATGCGACCTAGCTACATTTATCTCTCACATAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATATATATCTCA-GTAGCTCTCTTGTCTACATGGGATACATCC
36677128 CGT
65 CGT
* *
36677131 ATCACACATGTGACCTAGCTACATTTATCTCTCATGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATATATATCTCA-GTAGCTCTCTTGTCTACATGGGATACATCC
36677196 CGT
65 CGT
36677199 ATCACACATGTGACCTAGCTACTATATAGTATCTC-GTAGC-CTTCTTGT
1 ATCACACATGTGACCTAGCTAC-ATATA-TATCTCAGTAGCTC-TCTTGT
36677247 ACACATGATG
Statistics
Matches: 107, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
67 1 0.01
68 97 0.91
69 4 0.04
70 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (67 bp):
ATCACACATGTGACCTAGCTACATATATATCTCAGTAGCTCTCTTGTCTACATGGGATACATCCC
GT
Found at i:36680804 original size:47 final size:44
Alignment explanation
Indices: 36680688--36680909 Score: 146
Period size: 47 Copynumber: 4.8 Consensus size: 44
36680678 GTATATACGT
*
36680688 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGA
* * *
36680732 GCTGATGCGTGTCCCAGACACGTCTTACACTAGCTATCATCGTC-GA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-A-CAAC-TCTGA
* * **
36680778 GGTCGATGCATGTCCTC-GACATGTCTTACACTGGCACTTGTCTCTGTA
1 GCT-GATGCATGTCC-CAGACATGTCTTACACTAGCAC--AACTCTG-A
* * * * * * *
36680826 CCT-ATTCTATGTCCTAGACATGGTCTTATACTGGCACTCATAATGTG-
1 GCTGATGC-ATGTCCCAGACAT-GTCTTACACTAGCA--CA-ACTCTGA
* *
36680873 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACA
36680910 CAAGAAATCT
Statistics
Matches: 139, Mismatches: 23, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
44 34 0.24
45 2 0.01
46 25 0.18
47 55 0.40
48 19 0.14
49 3 0.02
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (44 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGA
Found at i:36688665 original size:40 final size:40
Alignment explanation
Indices: 36688559--36688734 Score: 298
Period size: 40 Copynumber: 4.4 Consensus size: 40
36688549 TATGTACATA
*
36688559 GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
36688599 GCATTCGTGCGGGGTTTTTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGC-GGGTTATTATAACCGGGTTAAGTCCCGAAG
36688640 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
36688680 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
36688720 GCATTTGTGCTGGTT
1 GCATTCGTGCGGGTT
36688735 GTTACATCCG
Statistics
Matches: 128, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 90 0.70
41 38 0.30
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:36696795 original size:40 final size:40
Alignment explanation
Indices: 36696689--36696824 Score: 227
Period size: 40 Copynumber: 3.4 Consensus size: 40
36696679 TATGTGCATA
*
36696689 GCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
36696729 GCATTCGTGCGGGGTTTTTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGC-GGGTTATTATAACCGGGTTAAGTCCCGAAG
*
36696770 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
36696810 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
36696825 GTTACATCCG
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 51 0.57
41 39 0.43
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:36704820 original size:40 final size:40
Alignment explanation
Indices: 36704765--36704859 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
36704755 TATGTGCATA
*
36704765 GCATTCGTGCGGGTTATGATAACTGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATGATAACCGGGTTAAGTCCCGAAG
*
36704805 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATGATAACCGGGTTAAGTCCCGAAG
*
36704845 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
36704860 GTTACATCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATGATAACCGGGTTAAGTCCCGAAG
Found at i:36711237 original size:90 final size:90
Alignment explanation
Indices: 36711077--36711247 Score: 243
Period size: 90 Copynumber: 1.9 Consensus size: 90
36711067 ACACCAAGTA
*
36711077 TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAACCACACATCGATGCCATATCCCAAA
1 TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAA
*
36711142 TATGGTCTTATACGAAGTCTCAAAT
66 CATGGTCTTATACGAAGTCTCAAAT
* * * * * * * * *
36711167 TGGTGCCGACGCCATGTCCCAGACATGTTCTTATACGGGACCTCATATCGATGCCATGTCCCAGA
1 TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAA
36711232 CATGGTCTTATACGAA
66 CATGGTCTTATACGAA
36711248 ATCACTTACC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 70 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (90 bp):
TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAA
CATGGTCTTATACGAAGTCTCAAAT
Found at i:36711241 original size:42 final size:42
Alignment explanation
Indices: 36711087--36711245 Score: 140
Period size: 42 Copynumber: 3.6 Consensus size: 42
36711077 TGGTGCCAAA
* * * *
36711087 GCCATGTCCCAGACATGGTCTTACATGGAACCACACATCGAT
1 GCCATGTCCCAGACATGGTCTTATACGGAACCTCATATCGAT
* * * * * *
36711129 GCCATATCCCAAATATGGTCTTATAC-GAAGTCTCAAATTGGTGCCGAC
1 GCCATGTCCCAGACATGGTCTTATACGGAA-CCTC--A-T-AT--CGAT
* *
36711177 GCCATGTCCCAGACATGTTCTTATACGGGACCTCATATCGAT
1 GCCATGTCCCAGACATGGTCTTATACGGAACCTCATATCGAT
36711219 GCCATGTCCCAGACATGGTCTTATACG
1 GCCATGTCCCAGACATGGTCTTATACG
36711246 AAATCACTTA
Statistics
Matches: 90, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
41 3 0.03
42 52 0.58
44 2 0.02
45 1 0.01
46 2 0.02
48 28 0.31
49 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTATACGGAACCTCATATCGAT
Found at i:36711271 original size:90 final size:90
Alignment explanation
Indices: 36711080--36711289 Score: 215
Period size: 90 Copynumber: 2.3 Consensus size: 90
36711070 CCAAGTATGG
* * *
36711080 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAACCACACATCGATGCCATATCCCAAATAT
1 TGCCGAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAACAT
* * ** *
36711145 GGTCTTATACGAAGTCTCAAATTGG
66 GGTCTTATACGAAATCACAAACCGA
* * * * * * * *
36711170 TGCCGACGCCATGTCCCAGACATGTTCTTATACGGGACCTCATATCGATGCCATGTCCCAGACAT
1 TGCCGAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAACAT
**
36711235 GGTCTTATACGAAATCACTTACCGA
66 GGTCTTATACGAAATCACAAACCGA
* * *
36711260 TGCTGAAGCCATATCCCTA-ATATGGTCTTA
1 TGCCGAAGCCATGTCCC-AGACATGGTCTTA
36711290 TACAGGATCT
Statistics
Matches: 96, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
90 95 0.99
91 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (90 bp):
TGCCGAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAACAT
GGTCTTATACGAAATCACAAACCGA
Found at i:36711833 original size:16 final size:16
Alignment explanation
Indices: 36711812--36711844 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
36711802 TTTTTATCAC
36711812 TCAATTTAGACCTTTT
1 TCAATTTAGACCTTTT
*
36711828 TCAATTTAGTCCTTTT
1 TCAATTTAGACCTTTT
36711844 T
1 T
36711845 AGGTGTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.06, T:0.55
Consensus pattern (16 bp):
TCAATTTAGACCTTTT
Found at i:36730438 original size:53 final size:54
Alignment explanation
Indices: 36730358--36730564 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
36730348 TTTCCTTTTT
* * *
36730358 AACTTACCATTGCCACGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
36730411 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
36730465 TAGTTTATCATTGCCATGTCTTGACATGGCCTTACATGATTTCCTTGCCTTGTCG
1 -AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
36730520 AACTTACCAATGCCATGCGTTGGCGTGGTCTTACTTGGTATCCTT
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
36730565 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 45 0.38
54 34 0.28
55 41 0.34
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:36734069 original size:35 final size:35
Alignment explanation
Indices: 36734030--36734099 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
36734020 GTTAAGTGTG
* *
36734030 CCTAAGCTATCCTAGTGGTCGAAGGTTCAAGTCCT
1 CCTAAGCTATCCTAGTGGTCCAAAGTTCAAGTCCT
*
36734065 CCTAAGCTATCCTGGTGGTCCAAAGTTCAAGTCCT
1 CCTAAGCTATCCTAGTGGTCCAAAGTTCAAGTCCT
36734100 AATGTTCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (35 bp):
CCTAAGCTATCCTAGTGGTCCAAAGTTCAAGTCCT
Found at i:36750505 original size:31 final size:31
Alignment explanation
Indices: 36750470--36750532 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
36750460 TATACTTGGG
*
36750470 TTTACATATAGGGTAAGATAGGTAACTTACT
1 TTTACATATAGGGTAAGATAGGCAACTTACT
*
36750501 TTTACATTTAGGGTAAGATAGGCAACTTACT
1 TTTACATATAGGGTAAGATAGGCAACTTACT
36750532 T
1 T
36750533 AAGGTAGAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (31 bp):
TTTACATATAGGGTAAGATAGGCAACTTACT
Found at i:36753444 original size:45 final size:45
Alignment explanation
Indices: 36753380--36753509 Score: 183
Period size: 45 Copynumber: 2.9 Consensus size: 45
36753370 GTTGTACAGT
* *
36753380 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
36753425 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* * *
36753470 ATTTTTCAGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
36753510 ATAAATTCGG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 12 0.15
44 14 0.18
45 52 0.67
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:36761491 original size:45 final size:45
Alignment explanation
Indices: 36761424--36761553 Score: 183
Period size: 45 Copynumber: 2.9 Consensus size: 45
36761414 GTTGTACAGT
* * *
36761424 ATTATTCGGGCCTTGGATCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
36761469 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
36761514 ATTTTTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
36761554 ATAAATTCGG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 12 0.15
44 14 0.18
45 52 0.67
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:36768469 original size:45 final size:45
Alignment explanation
Indices: 36768405--36768533 Score: 165
Period size: 45 Copynumber: 2.9 Consensus size: 45
36768395 GTTGTACAGT
* *
36768405 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* * * *
36768450 ATTATTCAGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
36768495 ATTTTTCGGGCC-TCGAGCCTAGCAGG--AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
36768534 ATAAATTCTG
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
42 12 0.16
44 12 0.16
45 50 0.68
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:36775256 original size:19 final size:19
Alignment explanation
Indices: 36775232--36775271 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
36775222 GTGCGAGTAA
36775232 GACCATGGCATCGATATGT
1 GACCATGGCATCGATATGT
36775251 GACCATGGCATCGATATGT
1 GACCATGGCATCGATATGT
36775270 GA
1 GA
36775272 TTCCGATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (19 bp):
GACCATGGCATCGATATGT
Found at i:36787631 original size:20 final size:20
Alignment explanation
Indices: 36787594--36787631 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36787584 GGTAAGTGAT
*
36787594 TTTTTATTTGTTTTTGATAA
1 TTTTTATTTGTTTGTGATAA
36787614 TTTTTATGTT-TTTGTGAT
1 TTTTTAT-TTGTTTGTGAT
36787632 CGTTGCTCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (20 bp):
TTTTTATTTGTTTGTGATAA
Found at i:36788493 original size:43 final size:41
Alignment explanation
Indices: 36788338--36788494 Score: 106
Period size: 43 Copynumber: 3.7 Consensus size: 41
36788328 TGTGTTTTCG
*
36788338 TGTAAGACCACATCTGGGACGTTGGCATCGACTTATGATTTACA
1 TGTAAGACCACATCTAGGACGTTGGCATCGA-TT-TGA-TTACA
** * * * * *
36788382 TGTAAGACCATGTCTAAGACATCGAGTTCAT--ATTTGATTTCG
1 TGTAAGACCACATCTAGGACGTTG-G--CATCGATTTGATTACA
36788424 TGTAAGACC-CTATCTAGGACAG-TGGCATCGATGTTCGATTACA
1 TGTAAGACCAC-ATCTAGGAC-GTTGGCATCGAT-TT-GATTACA
* *
36788467 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACATCTAGGACGTTGGCAT
36788495 TGTACGAGCT
Statistics
Matches: 85, Mismatches: 17, Indels: 23
0.68 0.14 0.18
Matches are distributed among these distances:
39 3 0.04
41 3 0.04
42 23 0.27
43 30 0.35
44 21 0.25
45 2 0.02
47 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACATCTAGGACGTTGGCATCGATTTGATTACA
Found at i:36794254 original size:40 final size:40
Alignment explanation
Indices: 36794194--36794414 Score: 318
Period size: 40 Copynumber: 5.5 Consensus size: 40
36794184 TATTCGGATG
36794194 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36794234 ATATACGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
36794274 ATATCCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
36794314 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
36794354 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36794394 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36794415 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 12 0.07
40 151 0.93
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:36797527 original size:10 final size:11
Alignment explanation
Indices: 36797509--36797583 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
36797499 ATACTGTTAT
36797509 ACATGATATG-
1 ACATGATATGC
*
36797519 ACATAATATGC
1 ACATGATATGC
36797530 ACATGATATG-
1 ACATGATATGC
** *
36797540 TTATGAGATGC
1 ACATGATATGC
36797551 ACATGATATGC
1 ACATGATATGC
* *
36797562 -TATGATATAC
1 ACATGATATGC
* *
36797572 TCATTATATGC
1 ACATGATATGC
36797583 A
1 A
36797584 TGGGTTGGGT
Statistics
Matches: 48, Mismatches: 14, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
10 24 0.50
11 24 0.50
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:36797565 original size:21 final size:21
Alignment explanation
Indices: 36797509--36797566 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
36797499 ATACTGTTAT
* *
36797509 ACATGATATGAC-ATAATATGC
1 ACATGATATG-CTATGAGATGC
*
36797530 ACATGATATGTTATGAGATGC
1 ACATGATATGCTATGAGATGC
36797551 ACATGATATGCTATGA
1 ACATGATATGCTATGA
36797567 TATACTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (21 bp):
ACATGATATGCTATGAGATGC
Found at i:36805530 original size:26 final size:25
Alignment explanation
Indices: 36805483--36805532 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
36805473 TTATAATATC
* * *
36805483 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
36805508 AAAAATGACCATTATACCTCCTAGG
1 AAAAATGACCATTATACC-CCTAGG
36805533 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:36805598 original size:11 final size:11
Alignment explanation
Indices: 36805569--36805621 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
36805559 ATATTGTTAT
36805569 ACATGATATG-
1 ACATGATATGC
*
36805579 ACATAATATGC
1 ACATGATATGC
36805590 ACATGATATG-
1 ACATGATATGC
** *
36805600 GTATGAGATGC
1 ACATGATATGC
36805611 ACATGATATGC
1 ACATGATATGC
36805622 TATGATATAC
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (11 bp):
ACATGATATGC
Found at i:36805625 original size:21 final size:21
Alignment explanation
Indices: 36805569--36805626 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
36805559 ATATTGTTAT
* *
36805569 ACATGATATGAC-ATAATATGC
1 ACATGATATG-CTATGAGATGC
*
36805590 ACATGATATGGTATGAGATGC
1 ACATGATATGCTATGAGATGC
36805611 ACATGATATGCTATGA
1 ACATGATATGCTATGA
36805627 TATACTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (21 bp):
ACATGATATGCTATGAGATGC
Found at i:36810001 original size:29 final size:29
Alignment explanation
Indices: 36809964--36810020 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
36809954 TAATTTGGGC
*
36809964 TAAATTGTGAAAATAAGAAATTG-AGGGAT
1 TAAAATGTGAAAA-AAGAAATTGTAGGGAT
* *
36809993 TAAAATGTGAATAAATAAATTGTAGGGA
1 TAAAATGTGAAAAAAGAAATTGTAGGGA
36810021 CTTGTATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.28
Consensus pattern (29 bp):
TAAAATGTGAAAAAAGAAATTGTAGGGAT
Found at i:36812861 original size:59 final size:59
Alignment explanation
Indices: 36812769--36812906 Score: 231
Period size: 59 Copynumber: 2.3 Consensus size: 59
36812759 TGTTGTCGAG
36812769 ATTACCAGTCTAGGTTAAATCCCTTACAATGACATTCACTCTCATAAGTTCAGATCTGA
1 ATTACCAGTCTAGGTTAAATCCCTTACAATGACATTCACTCTCATAAGTTCAGATCTGA
* **
36812828 ATTACCAGTCTAGGTTAAATCCCTTACATTGACATTCACTCTCATAAGTTTGGATCTGA
1 ATTACCAGTCTAGGTTAAATCCCTTACAATGACATTCACTCTCATAAGTTCAGATCTGA
* *
36812887 ATTACCAGTCCAGGCTAAAT
1 ATTACCAGTCTAGGTTAAAT
36812907 TCAGCCCTTA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (59 bp):
ATTACCAGTCTAGGTTAAATCCCTTACAATGACATTCACTCTCATAAGTTCAGATCTGA
Found at i:36829914 original size:14 final size:14
Alignment explanation
Indices: 36829897--36829925 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36829887 ATCCGGAGTT
36829897 TAAAATTGAATCAG
1 TAAAATTGAATCAG
36829911 TAAAATTGAATCAG
1 TAAAATTGAATCAG
36829925 T
1 T
36829926 GCCTATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (14 bp):
TAAAATTGAATCAG
Found at i:36834354 original size:49 final size:47
Alignment explanation
Indices: 36834254--36834418 Score: 276
Period size: 47 Copynumber: 3.5 Consensus size: 47
36834244 CATACATATC
* **
36834254 TCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
36834301 TCACATTGGCCATTCGGCCTTATCACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAC--ATATGCATGTTCACATTCA
36834350 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
36834397 TCACATTGGCCATTAGGCCTTA
1 TCACATTGGCCATTCGGCCTTA
36834419 CCTCATGTAT
Statistics
Matches: 112, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
47 65 0.58
49 47 0.42
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:36838377 original size:40 final size:40
Alignment explanation
Indices: 36838321--36838674 Score: 465
Period size: 40 Copynumber: 8.8 Consensus size: 40
36838311 GAATACACAT
* * * * *
36838321 CACCAGCATGATTGCTCTTTGGGACCTAGCCCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
36838361 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
36838401 CTCTAGCACAAATGCTCTCCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
36838441 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
36838481 CTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
36838521 CACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
36838561 CACCAGCACCAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
36838601 CACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
36838641 AACCAGCACGAATGCTTTTCGGGACTTAGCCCGG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGG
36838675 CTATGTAACT
Statistics
Matches: 269, Mismatches: 45, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 269 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:36840257 original size:47 final size:47
Alignment explanation
Indices: 36840188--36840399 Score: 388
Period size: 47 Copynumber: 4.5 Consensus size: 47
36840178 CATACATATC
* **
36840188 TCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
36840235 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
36840282 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
36840329 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
36840376 TCACATTGGCCATTAGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
36840400 TCATGTATAC
Statistics
Matches: 161, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 161 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:36840261 original size:22 final size:22
Alignment explanation
Indices: 36840234--36840355 Score: 58
Period size: 23 Copynumber: 5.3 Consensus size: 22
36840224 GTTCACATTC
36840234 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
36840256 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
36840280 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
36840303 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
36840327 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36840350 ATCACA
1 ATCACA
36840356 CATATGCATG
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 18 0.24
23 22 0.30
24 22 0.30
25 12 0.16
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36840417 original size:94 final size:94
Alignment explanation
Indices: 36840205--36840424 Score: 350
Period size: 94 Copynumber: 2.3 Consensus size: 94
36840195 AGCCATTCTA
* **
36840205 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
1 CCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
*
36840270 TGTTCACATTCATCACATTGGCCATTCGG
66 TGTTCACATTCATCACATTGGCCATTAGG
* **
36840299 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
1 CCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
36840364 TGTTCACATTCATCACATTGGCCATTAGG
66 TGTTCACATTCATCACATTGGCCATTAGG
* **
36840393 CCTTATCTCATGTATACACATTCACATTCATC
1 CCTTATCACACATATACACATTCACATTCATC
36840425 TCATAAAATC
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 119 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (94 bp):
CCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
TGTTCACATTCATCACATTGGCCATTAGG
Found at i:36844387 original size:27 final size:26
Alignment explanation
Indices: 36844335--36844393 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
36844325 CCACATATAT
*
36844335 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
36844361 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
36844388 ATATCT
1 ATATCT
36844394 AGCAGCTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:36853138 original size:27 final size:26
Alignment explanation
Indices: 36853108--36853237 Score: 95
Period size: 27 Copynumber: 4.8 Consensus size: 26
36853098 GACCCCCAAC
36853108 TTGTAAGATTACTGAAATACCCCTGAT
1 TTGTAA-ATTACTGAAATACCCCTGAT
* *
36853135 TTGTGAAATTA-TCGAAACA-CCTTCGAT
1 TTGT-AAATTACT-GAAATACCCCT-GAT
* * * * *
36853162 TTGTGAAATTACCGAAGTACCTCTAAC
1 TTGT-AAATTACTGAAATACCCCTGAT
*
36853189 TTATAAAATTACTGAAATACCCCT-AGT
1 TTGT-AAATTACTGAAATACCCCTGA-T
36853216 TTGTAAAATTACTGAAATACCC
1 TTGT-AAATTACTGAAATACCC
36853238 TATAGTATAA
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
26 5 0.06
27 72 0.89
28 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.32
Consensus pattern (26 bp):
TTGTAAATTACTGAAATACCCCTGAT
Found at i:36853248 original size:26 final size:25
Alignment explanation
Indices: 36853190--36853268 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 25
36853180 ACCTCTAACT
*
36853190 TATAAAATTACTGAAATACCCCTAGTT
1 TATAAAATTACTGAAATA-CCCTA-TG
*
36853217 TGTAAAATTACTGAAATACCCTATAG
1 TATAAAATTACTGAAATACCCTAT-G
*
36853243 TATAAAATTACCGAAATACCTCTATG
1 TATAAAATTACTGAAATACC-CTATG
36853269 GGGTGAAATG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
25 1 0.02
26 24 0.52
27 21 0.46
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (25 bp):
TATAAAATTACTGAAATACCCTATG
Found at i:36853612 original size:22 final size:22
Alignment explanation
Indices: 36853584--36853642 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
36853574 TAATCAGATT
36853584 ATGGCTCTGTGCCAACCTAAAA
1 ATGGCTCTGTGCCAACCTAAAA
* * * **
36853606 ATGGCTCTATGCCATCTTAACT
1 ATGGCTCTGTGCCAACCTAAAA
*
36853628 ATGGCTTTGTGCCAA
1 ATGGCTCTGTGCCAA
36853643 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (22 bp):
ATGGCTCTGTGCCAACCTAAAA
Found at i:36854795 original size:47 final size:47
Alignment explanation
Indices: 36854721--36854944 Score: 167
Period size: 47 Copynumber: 4.7 Consensus size: 47
36854711 GCGGTGTTAC
*
36854721 AGCTAGTGTAAGA-CATGTTTGGGACATGCATCGGCCACATTATG-AG
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATC-GCCACATTATGTAG
* *
36854767 AGCTAGTGTAAGACCATGTCTGGGACATGGCAACG--TCATTGA-GATGAG
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGCCACATT-ATG-T-AG
* * * * *
36854815 TGCTAGTGTAAGA-CATGTCTGGGACATGTATCGGCCTCGA-GACGTA-
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATC-GCCAC-ATTATGTAG
* * * * *
36854861 AGCCAGTGTAAGACCATGTTTGGGACATTCCATCGACACAGATATGCTAG
1 AGCTAGTGTAAGACCATGTCTGGGACA-TGCATCGCCACA-TTATG-TAG
*
36854911 AGCTTGTGTAAGACCATGTCTGGGACATGGCATC
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
36854945 AGCACCTGCA
Statistics
Matches: 140, Mismatches: 20, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
45 5 0.04
46 29 0.21
47 45 0.32
48 26 0.19
49 6 0.04
50 29 0.21
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCGCCACATTATGTAG
Found at i:36859234 original size:13 final size:13
Alignment explanation
Indices: 36859216--36859240 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36859206 CTTTGCTAAA
36859216 TGAATTATGCTTG
1 TGAATTATGCTTG
36859229 TGAATTATGCTT
1 TGAATTATGCTT
36859241 AGTACAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
TGAATTATGCTTG
Found at i:36879902 original size:46 final size:46
Alignment explanation
Indices: 36879849--36879973 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
36879839 TGAGCATCCA
*
36879849 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-G
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTG
*
36879895 AATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTG
* *
36879941 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36879974 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 2 0.03
46 71 0.97
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTG
Found at i:36883165 original size:22 final size:23
Alignment explanation
Indices: 36883140--36883182 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
36883130 AAAGCCGAGG
36883140 AGCTCAGTAT-GGAG-AAAAGAAA
1 AGCTCA-TATGGGAGCAAAAGAAA
*
36883162 AGCTGATATGGGAGCAAAAGA
1 AGCTCATATGGGAGCAAAAGA
36883183 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.17
22 9 0.50
23 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (23 bp):
AGCTCATATGGGAGCAAAAGAAA
Found at i:36888770 original size:40 final size:40
Alignment explanation
Indices: 36888709--36888925 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
36888699 AGATTGATAA
*
36888709 CCGGGCTAAG-CCCGAAAGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36888748 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36888788 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
36888828 CCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36888868 CCGGACTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
36888908 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36888926 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 25 0.15
40 137 0.85
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36890549 original size:48 final size:48
Alignment explanation
Indices: 36890493--36890589 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
36890483 ATCCTCAGAG
36890493 AAAACTTTTCCTTGAGTTTCTATAGGCACATCTCTATACAGTTTATCT
1 AAAACTTTTCCTTGAGTTTCTATAGGCACATCTCTATACAGTTTATCT
36890541 AAAACTTTTCCTTGAGTTTCTATAGGCACATCTCTATACAGTTTATCT
1 AAAACTTTTCCTTGAGTTTCTATAGGCACATCTCTATACAGTTTATCT
36890589 A
1 A
36890590 CCCTAACCGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (48 bp):
AAAACTTTTCCTTGAGTTTCTATAGGCACATCTCTATACAGTTTATCT
Found at i:36891210 original size:17 final size:18
Alignment explanation
Indices: 36891178--36891211 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36891168 CTCTCCTAAA
36891178 ACGATTCCGATCTTTCTC
1 ACGATTCCGATCTTTCTC
*
36891196 ACGATTCTG-TCTTTCT
1 ACGATTCCGATCTTTCT
36891212 GTATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (18 bp):
ACGATTCCGATCTTTCTC
Found at i:36893560 original size:52 final size:48
Alignment explanation
Indices: 36893498--36893672 Score: 194
Period size: 47 Copynumber: 3.6 Consensus size: 48
36893488 GAAATGTGAT
* *
36893498 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG---TGTGATATGTGC
* *
36893550 TTCCGTATAAGACCATATCCGGGATATGGCATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * *
36893597 TACTGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTG-
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * *
36893643 ATCCGTGTAAGACCATGGCTGGGCTATGGC
1 TTCCGTATAAGACCATAGCTGGGATATGGC
36893673 CTCGGTATGT
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 23 0.21
47 54 0.50
50 1 0.01
51 1 0.01
52 29 0.27
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:36897287 original size:18 final size:19
Alignment explanation
Indices: 36897260--36897295 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
36897250 GAACTTATCA
*
36897260 ATGCATATTTTA-AAAATG
1 ATGCACATTTTATAAAATG
36897278 ATGCACATTTTATAAAAT
1 ATGCACATTTTATAAAAT
36897296 TTCCTATCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (19 bp):
ATGCACATTTTATAAAATG
Found at i:36897447 original size:48 final size:47
Alignment explanation
Indices: 36897384--36897475 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
36897374 ATCGCTGATT
*
36897384 TGCAAATAAACTGCCAATAATAACACTTTGTGGACAAGCCACCACATA
1 TGCAAATAAACTGCCAATAA-AACACATTGTGGACAAGCCACCACATA
* * * *
36897432 TGCAGATATACTGCCATTGAAACACATTGTGGACAAGCCACCAC
1 TGCAAATAAACTGCCAATAAAACACATTGTGGACAAGCCACCAC
36897476 TGATTTGCAG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 23 0.59
48 16 0.41
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.21
Consensus pattern (47 bp):
TGCAAATAAACTGCCAATAAAACACATTGTGGACAAGCCACCACATA
Found at i:36904967 original size:48 final size:48
Alignment explanation
Indices: 36904891--36905156 Score: 160
Period size: 47 Copynumber: 5.6 Consensus size: 48
36904881 GATAAATTGT
* * * *
36904891 CGATGCCATGTCCCTGATATGGTCTTACACTAGCTGTCATATATGTGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATATGTGTGC
* * * *
36904941 TGATGCATGTCCCAGACATGTCTTACACTAG--CACA-ACTCT-TAGT--
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA-TATGT-GTGC
* * ** * * * *
36904985 CAATGCGTGTCTGAGACAAGTCTTACACTGGCTATC-TCTATCGAG-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATAT-GTGTGC
* * * * * *
36905032 CGATGCATGTCCTAGACATGTCTTACTCTGGCACTC--ATCTCTATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATGTGTGC
*
36905078 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATTTG-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATATGTGTGC
* *
36905126 TGAAGCATGTCCCAGACATGTCTTACACTGG
1 CGATGCATGTCCCAGACATGTCTTACACTGG
36905157 TGCACAAATC
Statistics
Matches: 163, Mismatches: 39, Indels: 32
0.70 0.17 0.14
Matches are distributed among these distances:
44 24 0.15
45 4 0.02
46 29 0.18
47 55 0.34
48 32 0.20
49 14 0.09
50 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATGTGTGC
Found at i:36905055 original size:47 final size:47
Alignment explanation
Indices: 36904942--36905156 Score: 178
Period size: 47 Copynumber: 4.6 Consensus size: 47
36904932 TATGTGTGCT
* *
36904942 GATGCATGTCCCAGACATGTCTTACACTAGCA---CA-ACTCTTA-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCTCATA-TC-TAGGCC
* * ** * *
36904986 AATGCGTGTCTGAGACAAGTCTTACACTGGCTATCTC-TATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCATATCTAGGCC
* * * *
36905033 GATGCATGTCCTAGACATGTCTTACTCTGGCA-CTCATCTCTATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCTCATATCTAGGCC
* *
36905079 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAAT-TTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTCAT-ATCTAGGCC
*
36905127 GAAGCATGTCCCAGACATGTCTTACACTGG
1 GATGCATGTCCCAGACATGTCTTACACTGG
36905157 TGCACAAATC
Statistics
Matches: 136, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 25 0.18
45 4 0.03
46 25 0.18
47 56 0.41
48 25 0.18
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCTCATATCTAGGCC
Found at i:36911008 original size:39 final size:39
Alignment explanation
Indices: 36910954--36911031 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
36910944 CATGAAAAAC
* *
36910954 TTAGAAAATTTCATGCATAAAGGCTCCACATGCCTGTGT
1 TTAGAAAATTTCATGCATAAAGGCTCCACACGCCCGTGT
*
36910993 TTAGAAAATTTCATGCATCAAGGCTCCACACGCCCGTGT
1 TTAGAAAATTTCATGCATAAAGGCTCCACACGCCCGTGT
36911032 GAATATAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (39 bp):
TTAGAAAATTTCATGCATAAAGGCTCCACACGCCCGTGT
Found at i:36912195 original size:47 final size:44
Alignment explanation
Indices: 36912088--36912300 Score: 144
Period size: 47 Copynumber: 4.6 Consensus size: 44
36912078 TATCTGTGCT
36912088 GATGCATGTCCCAGACATGTCTTACACTAGTACAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGTACAACTCTTAGCC
** * * * * *
36912132 GATGTGTGTCCGAGACACGTCTTACACTAGCTATC-TCTGTTGAAGTC
1 GATGCATGTCCCAGACATGTCTTACACTAG-TA-CAACTCTT--AGCC
* * * *
36912179 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTA-CC
1 GATGCATGTCCCAGACATGTCTTACACTAGTA--CAACTCT-TAGCC
* * * * *
36912225 GATGCCATGTCCCAGACATGGTATTACACTGGCTCTCATAATGTT-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-T-ACA-ACTCTTAGCC
*
36912273 GAAGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
36912301 GGCGCACAAA
Statistics
Matches: 131, Mismatches: 25, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
44 26 0.20
45 6 0.05
46 16 0.12
47 58 0.44
48 22 0.17
49 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGTACAACTCTTAGCC
Found at i:36912290 original size:94 final size:92
Alignment explanation
Indices: 36912035--36912303 Score: 260
Period size: 94 Copynumber: 2.9 Consensus size: 92
36912025 GGGATAAATT
* * * * *
36912035 GCCGATGCCATGTTCCTGACATGGTCTTACATTGGCTCTCATATATCTGTGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGT-TGCCGATGCATGTCCC
* *
36912100 AGACATGTCTTACACTAGTACAACTCTTA
64 AGACATGTCTTACACTGGCACAACTCTTA
** * * * * * *
36912129 GCCGATG-TGTGTCCGAGACA-CGTCTTACACTAGCTATC-T-CTGTTGAAGTCGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTT---GCCGATGCATGTCC
* *
36912190 CAGACATGTCTTACTCTGGCACTCATCTCTGTA
63 CAGACATGTCTTACACTGGCA--CAACTCT-TA
* *
36912223 -CCGATGCCATGTCCCAGACATGGTATTACACTGGCTCTCATAATGTTGCCGAAGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTTGCCGATGCATGTCCCAG
36912287 ACATGTCTTACACTGGC
66 ACATGTCTTACACTGGC
36912304 GCACAAATCA
Statistics
Matches: 137, Mismatches: 28, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
88 1 0.01
89 2 0.01
91 31 0.23
92 14 0.10
93 20 0.15
94 50 0.36
95 14 0.10
96 1 0.01
97 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (92 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTTGCCGATGCATGTCCCAG
ACATGTCTTACACTGGCACAACTCTTA
Found at i:36924923 original size:93 final size:93
Alignment explanation
Indices: 36924764--36924935 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
36924754 AGGATGTTTG
* *** *
36924764 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCTAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCAAACTCGTTGAG
36924829 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
36924857 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCAAACTCGTTGAG
36924922 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
36924936 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:36924929 original size:46 final size:46
Alignment explanation
Indices: 36924766--36924943 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
36924756 GATGTTTGGG
*
36924766 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** ** *** * * **
36924812 TGTCTAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAA
* *
36924859 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* *
36924905 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36924944 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 26, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:36927908 original size:14 final size:15
Alignment explanation
Indices: 36927859--36927908 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
36927849 GTATCTTGGG
*
36927859 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
36927874 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
36927889 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
36927903 TTTCTT
1 TTTCTT
36927909 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:36936356 original size:53 final size:52
Alignment explanation
Indices: 36936173--36936427 Score: 241
Period size: 55 Copynumber: 4.8 Consensus size: 52
36936163 ATTAGGGTTT
* * *
36936173 AAGGATACCATGTAAGACCATACCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCTAAGGC
* * * *
36936228 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
36936283 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* *
36936336 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGC
* * ** *
36936385 AAGGATACCACGTAAGACCATGACAAGTTATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
36936428 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 23, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 44 0.26
54 8 0.05
55 67 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:36936379 original size:108 final size:110
Alignment explanation
Indices: 36936180--36936380 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
36936170 TTTAAGGATA
*
36936180 CCATGTAAGACCATACCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATACCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
36936245 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
36936290 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATACCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
36936352 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
36936381 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 7 0.08
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATACCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:36936645 original size:16 final size:16
Alignment explanation
Indices: 36936624--36936654 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36936614 ATAAATTTGA
36936624 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
36936640 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
36936655 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:36939460 original size:23 final size:24
Alignment explanation
Indices: 36939427--36939472 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
36939417 GCATCACATT
*
36939427 TCATATACCAAAATCAAACCATAA
1 TCATATACCAAAACCAAACCATAA
*
36939451 TCATA-ACCAAAACCAAGCCATA
1 TCATATACCAAAACCAAACCATA
36939473 TCACATGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.52, C:0.28, G:0.02, T:0.17
Consensus pattern (24 bp):
TCATATACCAAAACCAAACCATAA
Found at i:36940135 original size:43 final size:44
Alignment explanation
Indices: 36940014--36940135 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 44
36940004 AGCTCGTACA
* * *
36940014 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATTAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * *
36940057 ATGCCACTGTCCCA-ACCAGGGTCTTATAC-AAAATCAAATA-CG
1 ATGCCACTGTCCCAGA-CATGGTCTTACACGTAAATCAAATATCG
36940099 ATGCCGA-TGTCCCAGACATGGTCTTACACGTAAATCA
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCA
36940136 TAAGTCGATA
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
42 28 0.44
43 36 0.56
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:36941877 original size:75 final size:76
Alignment explanation
Indices: 36941748--36941997 Score: 258
Period size: 75 Copynumber: 3.3 Consensus size: 76
36941738 CAGGCAAATG
* * *
36941748 CTTTCATCAGTTAATTTGACTAGTGC-AGGGAGCACCATTATACTCG-TCGATTTATCCGACTAG
1 CTTTCATCAGTTTATCTGACTAGTGCTAGGCA-CACCATTATACTCGTTCGATTTATCCGACTAG
* **
36941811 CA-TTGAGCGTAA
65 CACTGGA-CACAA
* *
36941823 CTTTCGTCAGTTTATCTGACTAGTGCTAGGCACACCATTATACTCGTTCG-TTTATTCGACTAGC
1 CTTTCATCAGTTTATCTGACTAGTGCTAGGCACACCATTATACTCGTTCGATTTATCCGACTAGC
36941887 ACTGGACACAA
66 ACTGGACACAA
* * * * * *
36941898 CTTTCATAAATTTACCAGACTAGTGCTAGGCACACCGTTATACTCGTT-GATTTATCCAACTAGC
1 CTTTCATCAGTTTATCTGACTAGTGCTAGGCACACCATTATACTCGTTCGATTTATCCGACTAGC
** *
36941962 GTTGGGCACAA
66 ACTGGACACAA
** * *
36941973 CTTTCATTTGTTTATTTGGCTAGTG
1 CTTTCATCAGTTTATCTGACTAGTG
36941998 ATGGGAACAT
Statistics
Matches: 145, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
74 1 0.01
75 134 0.92
76 10 0.07
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (76 bp):
CTTTCATCAGTTTATCTGACTAGTGCTAGGCACACCATTATACTCGTTCGATTTATCCGACTAGC
ACTGGACACAA
Found at i:36942026 original size:150 final size:150
Alignment explanation
Indices: 36941765--36942034 Score: 317
Period size: 150 Copynumber: 1.8 Consensus size: 150
36941755 CAGTTAATTT
* * ** *
36941765 GACTAGTGCAGGGAGCACCATTATACTCGTCGATTTATCCGACTAGCATTGAGCGTAACTTTCGT
1 GACTAGTGCAGGCAGCACCATTATACTCGTCGATTTATCCAACTAGCATTGAGCACAACTTTCAT
* * *
36941830 CAGTTTATCTGACTAGTGCTAGGCACACCATTATACTCGTTCGTTTATTCGACTAGCACTGGACA
66 CAGTTTATCTGACTAGTGATAGGAACACCATTATACTCGTTCGTTTATCCGACTAGCACTGGACA
36941895 CAACTTTCATAAATTTACCA
131 CAACTTTCATAAATTTACCA
* * * *
36941915 GACTAGTGCTAGGCA-CACCGTTATACTCGTTGATTTATCCAACTAGCGTTGGGCACAACTTTCA
1 GACTAGTGC-AGGCAGCACCATTATACTCGTCGATTTATCCAACTAGCATTGAGCACAACTTTCA
** * * * ** ** * *
36941979 TTTGTTTATTTGGCTAGTGATGGGAACATTATTATGTTTGTTGGTTTATCCGACTA
65 TCAGTTTATCTGACTAGTGATAGGAACACCATTATACTCGTTCGTTTATCCGACTA
36942035 ACGTGGGGCC
Statistics
Matches: 96, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
150 92 0.96
151 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (150 bp):
GACTAGTGCAGGCAGCACCATTATACTCGTCGATTTATCCAACTAGCATTGAGCACAACTTTCAT
CAGTTTATCTGACTAGTGATAGGAACACCATTATACTCGTTCGTTTATCCGACTAGCACTGGACA
CAACTTTCATAAATTTACCA
Found at i:36945894 original size:11 final size:11
Alignment explanation
Indices: 36945856--36945897 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
36945846 AAAGCATGTG
*
36945856 ATTATGTGATT
1 ATTAAGTGATT
*
36945867 ATTAAGCGATT
1 ATTAAGTGATT
*
36945878 A-GAAGTGATT
1 ATTAAGTGATT
36945888 ATTAAGTGAT
1 ATTAAGTGAT
36945898 ATGTGATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.40
Consensus pattern (11 bp):
ATTAAGTGATT
Found at i:36947195 original size:51 final size:50
Alignment explanation
Indices: 36947071--36947340 Score: 263
Period size: 50 Copynumber: 5.4 Consensus size: 50
36947061 TAAAATGGTT
** * * * *
36947071 TTCGGTCACGTGTGTAGTACTAAGTTTAGACTACTACGTGTACCAAATCG
1 TTCGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
* * * *
36947121 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGAACCAGATAG
1 TTCGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
* * * *
36947171 CTTCGATCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTG
1 -TTCGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
* * * * *
36947222 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAG
1 TTCGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
** * * * * *
36947272 CTTCAATCACGTGTGTAGTACTAAGTACATGCTACTACGTGTATTCA-ATGG
1 -TTCGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAG
*
36947323 TTAGGTCACGTGTGTAGT
1 TTCGGTCACGTGTGTAGT
36947341 GTAACACCCC
Statistics
Matches: 175, Mismatches: 42, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
50 96 0.55
51 78 0.45
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (50 bp):
TTCGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
Found at i:36947209 original size:101 final size:101
Alignment explanation
Indices: 36947071--36947340 Score: 380
Period size: 101 Copynumber: 2.7 Consensus size: 101
36947061 TAAAATGGTT
* ** *
36947071 TTCGGTCACGTGTGTAGTACTAAGTTTAGACTACTACGTGTACCAAATCGTTAGGTCACATGTGT
1 TTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATCGTTAGGTCACATGTGT
36947136 AGTACTAAGTGCAGGCTACTATGCGAACCAGATAGC
66 AGTACTAAGTGCAGGCTACTATGCGAACCAGATAGC
* * * * *
36947172 TTCGATCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATCGTTAGGTCACATGTGT
* *
36947237 AGTACTAAGTGCAGGCTACTATGCGTACCTGATAGC
66 AGTACTAAGTGCAGGCTACTATGCGAACCAGATAGC
* * * * *
36947273 TTCAATCACGTGTGTAGTACTAAGTACATGCTACTACGTGTATTC-AATGGTTAGGTCACGTGTG
1 TTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTA-CCAAATCGTTAGGTCACATGTG
36947337 TAGT
65 TAGT
36947341 GTAACACCCC
Statistics
Matches: 149, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
101 148 0.99
102 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (101 bp):
TTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATCGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTATGCGAACCAGATAGC
Found at i:36962052 original size:46 final size:46
Alignment explanation
Indices: 36962002--36962170 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
36961992 TGAGCATTCA
36962002 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* * * *
36962048 AACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CCG
* *
36962095 AACTCGTTGAGATT-AGTCCGAGTTCATTTATGGATGCGAACGCCCG
1 AACTCGTTGAG-TTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
*
36962141 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
36962171 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 11, Indels: 22
0.75 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.06
46 52 0.51
47 24 0.24
48 6 0.06
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
Found at i:36966292 original size:16 final size:16
Alignment explanation
Indices: 36966251--36966296 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
36966241 GGTAAGTTTT
36966251 CTTTAGATT-TG-AAA
1 CTTTAGATTGTGAAAA
* * *
36966265 CTATAAACTGTGAAAA
1 CTTTAGATTGTGAAAA
36966281 CTTTAGATTGTGAAAA
1 CTTTAGATTGTGAAAA
36966297 TGATAGATAG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 6 0.25
15 2 0.08
16 16 0.67
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (16 bp):
CTTTAGATTGTGAAAA
Found at i:36971991 original size:43 final size:43
Alignment explanation
Indices: 36971923--36972037 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
36971913 TTTTAGATAT
* * ** * *
36971923 GATTTCGTGTAAGACCACGCCTGGGACATTAGCATCGACTT-GA
1 GATTACGTGTAAGACCATGTTTGGGACATTAGAATCGA-TTAAA
* *
36971966 GA-TATCGTGTAAGACCGTGTTTGGGACATTGGAATCGATTAAA
1 GATTA-CGTGTAAGACCATGTTTGGGACATTAGAATCGATTAAA
*
36972009 GATTACTTGTAAGACCATGTTTGGGACAT
1 GATTACGTGTAAGACCATGTTTGGGACAT
36972038 CGTCATCGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 3 0.05
43 54 0.92
44 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTTTGGGACATTAGAATCGATTAAA
Found at i:36986953 original size:31 final size:31
Alignment explanation
Indices: 36986910--36986973 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
36986900 CCTTTTCATA
36986910 TTTCATAATTCATAACACTAGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
* ** *
36986941 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
36986972 TT
1 TT
36986974 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTAGGCCGAAGCCT
Found at i:36987212 original size:24 final size:24
Alignment explanation
Indices: 36987179--36987329 Score: 231
Period size: 24 Copynumber: 6.4 Consensus size: 24
36987169 CTGGAGGCCT
36987179 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
36987203 AGCCCTTTTTTAATAACTGGGGCATA
1 AGCCC--TTTTAATAACTGGGGCATA
36987229 AGCCC-TTTAA-AACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36987250 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36987274 AGCCCTTTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
36987297 AGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36987321 AGCCCTTTT
1 AGCCCTTTT
36987330 GCACTTCCTC
Statistics
Matches: 119, Mismatches: 1, Indels: 14
0.89 0.01 0.10
Matches are distributed among these distances:
21 12 0.10
22 9 0.08
23 32 0.27
24 43 0.36
25 17 0.14
26 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:36987329 original size:47 final size:47
Alignment explanation
Indices: 36987179--36987329 Score: 236
Period size: 47 Copynumber: 3.2 Consensus size: 47
36987169 CTGGAGGCCT
36987179 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACT-GGGCATAAGCCC--TTTTAATAACTGGGGCATA
36987229 AGCCC-TTTAA-AACTGGGCATAAGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
36987274 AGCCCTTTTAATAACTGGGCATAAGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGCATAAGCCCTTTTAATAACTGGGGCATA
36987321 AGCCCTTTT
1 AGCCCTTTT
36987330 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 1, Indels: 9
0.91 0.01 0.08
Matches are distributed among these distances:
45 24 0.25
46 10 0.10
47 53 0.55
48 5 0.05
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:36987400 original size:9 final size:9
Alignment explanation
Indices: 36987386--36987462 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
36987376 ATCTCGTGTG
36987386 CATATCATA
1 CATATCATA
*
36987395 CATATCATGTG
1 CATATCA--TA
36987406 CATATCATA
1 CATATCATA
* *
36987415 CATGTCATCTG
1 CATATCA--TA
36987426 CATATCATA
1 CATATCATA
*
36987435 CATATCATGTG
1 CATATCA--TA
36987446 CATATCATA
1 CATATCATA
36987455 CATATCAT
1 CATATCAT
36987463 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:36987405 original size:20 final size:20
Alignment explanation
Indices: 36987382--36987464 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
36987372 GAACATCTCG
36987382 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
36987402 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
36987422 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
36987442 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
36987462 TGT
1 TGT
36987465 TTATCAAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:36987529 original size:25 final size:25
Alignment explanation
Indices: 36987501--36987573 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
36987491 ATATATAAAC
* *
36987501 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
36987526 CCTAGGGGCAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
36987551 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
36987574 CATATTATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:36995160 original size:31 final size:31
Alignment explanation
Indices: 36995117--36995180 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36995107 CCTTTTCATA
36995117 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
36995148 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
36995179 TT
1 TT
36995181 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:36995447 original size:23 final size:23
Alignment explanation
Indices: 36995392--36995507 Score: 154
Period size: 23 Copynumber: 5.1 Consensus size: 23
36995382 CCTAGCCTCT
36995392 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
36995414 TTTTTTAATAACTGGGGCATAAGCCC
1 ---TTTAATAACTGGGGCATAAGCCC
36995440 TTTAATAAC-GGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
36995462 TTTTAATAACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
36995485 TTT--TAA-TGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
36995505 TTT
1 TTT
36995508 TGCACTTCCT
Statistics
Matches: 87, Mismatches: 0, Indels: 13
0.87 0.00 0.13
Matches are distributed among these distances:
19 1 0.01
20 18 0.21
22 16 0.18
23 30 0.34
25 16 0.18
26 6 0.07
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:36995498 original size:20 final size:20
Alignment explanation
Indices: 36995426--36995508 Score: 103
Period size: 20 Copynumber: 3.9 Consensus size: 20
36995416 TTTTAATAAC
36995426 TGGGGCATAAGCCCTTTAATAA
1 TGGGGCATAAGCCCTTT--TAA
*
36995448 CGGGGCATAAGCCCTTTTAA
1 TGGGGCATAAGCCCTTTTAA
*
36995468 TAACTGGGCATAAGCCCTTTTAA
1 T---GGGGCATAAGCCCTTTTAA
36995491 TGGGGCATAAGCCCTTTT
1 TGGGGCATAAGCCCTTTT
36995509 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
20 19 0.35
22 16 0.30
23 19 0.35
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (20 bp):
TGGGGCATAAGCCCTTTTAA
Found at i:36995579 original size:9 final size:9
Alignment explanation
Indices: 36995565--36995638 Score: 85
Period size: 9 Copynumber: 7.9 Consensus size: 9
36995555 ATCTCGTGTG
36995565 CATATCATA
1 CATATCATA
*
36995574 CATATCATGTG
1 CATATCA--TA
36995585 CATATCATA
1 CATATCATA
* *
36995594 CATGTCATTG
1 CATATCA-TA
36995604 CATATCATA
1 CATATCATA
*
36995613 CATATCATG
1 CATATCATA
36995622 CATATCATA
1 CATATCATA
36995631 CATATCAT
1 CATATCAT
36995639 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
9 39 0.72
10 7 0.13
11 8 0.15
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:36995606 original size:39 final size:37
Alignment explanation
Indices: 36995563--36995638 Score: 125
Period size: 37 Copynumber: 2.0 Consensus size: 37
36995553 ACATCTCGTG
*
36995563 TGCATATCATACATATCATGTGCATATCATACATGTCAT
1 TGCATATCATACATATCA--TGCATATCATACATATCAT
36995602 TGCATATCATACATATCATGCATATCATACATATCAT
1 TGCATATCATACATATCATGCATATCATACATATCAT
36995639 GTTTATCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 18 0.50
39 18 0.50
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (37 bp):
TGCATATCATACATATCATGCATATCATACATATCAT
Found at i:36995646 original size:18 final size:18
Alignment explanation
Indices: 36995563--36995639 Score: 118
Period size: 18 Copynumber: 4.1 Consensus size: 18
36995553 ACATCTCGTG
36995563 TGCATATCATACATATCA
1 TGCATATCATACATATCA
*
36995581 TGTGCATATCATACATGTCA
1 --TGCATATCATACATATCA
36995601 TTGCATATCATACATATCA
1 -TGCATATCATACATATCA
36995620 TGCATATCATACATATCA
1 TGCATATCATACATATCA
36995638 TG
1 TG
36995640 TTTATCAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
18 20 0.37
19 17 0.31
20 17 0.31
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (18 bp):
TGCATATCATACATATCA
Found at i:36995705 original size:25 final size:25
Alignment explanation
Indices: 36995677--36995724 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36995667 ATATATAAAC
* * *
36995677 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36995702 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36995725 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:37002636 original size:8 final size:8
Alignment explanation
Indices: 37002618--37002648 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
37002608 TGAGTATTGG
37002618 TTTTA-TT
1 TTTTATTT
37002625 TTTTATTT
1 TTTTATTT
37002633 TTTTATTT
1 TTTTATTT
37002641 TTTTATTT
1 TTTTATTT
37002649 GGTTAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.22
8 18 0.78
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTATTT
Found at i:37006707 original size:26 final size:27
Alignment explanation
Indices: 37006656--37006769 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 27
37006646 TAAGTTGTAG
*
37006656 AATTACCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
* * *
37006683 AATT-CCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
** *
37006709 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
* * *
37006736 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
37006763 AATTACC
1 AATTACC
37006770 ATTTTGCCCC
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 22 0.31
27 50 0.69
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAA
Found at i:37007549 original size:27 final size:26
Alignment explanation
Indices: 37007501--37007560 Score: 93
Period size: 27 Copynumber: 2.3 Consensus size: 26
37007491 ACATATATAT
*
37007501 ATATCTGTTCTGGTGGCCTAGTCACA
1 ATATCTGTTCTGGTGACCTAGTCACA
*
37007527 ATATCTGTATCTGGTGACTTAGTCACA
1 ATATCTGT-TCTGGTGACCTAGTCACA
37007554 ATATCTG
1 ATATCTG
37007561 GTAGCCTCGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 8 0.26
27 23 0.74
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGTCACA
Found at i:37023989 original size:6 final size:6
Alignment explanation
Indices: 37023978--37024049 Score: 83
Period size: 6 Copynumber: 11.8 Consensus size: 6
37023968 TAAAAACATT
* * *
37023978 ATCAGA ATCAGA ATCAGA ATCAGA ATCAAA ATCAGA ATTATGTG A-CAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
37024027 ATCAGA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
37024050 GTAACAGAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
5 1 0.02
6 52 0.93
7 2 0.04
8 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:37024030 original size:31 final size:31
Alignment explanation
Indices: 37023978--37024061 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
37023968 TAAAAACATT
37023978 ATCAGAATCA-G-AATCAGAATCAGAATCAAA
1 ATCAGAATCAGGTAA-CAGAATCAGAATCAAA
* * * *
37024008 ATCAGAATTATGTGACAGAATCAGAATCAGA
1 ATCAGAATCAGGTAACAGAATCAGAATCAAA
*
37024039 ATCAGTATCAGGTAACAGAATCA
1 ATCAGAATCAGGTAACAGAATCA
37024062 AAAATTAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
30 9 0.20
31 35 0.78
32 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
ATCAGAATCAGGTAACAGAATCAGAATCAAA
Found at i:37024239 original size:27 final size:28
Alignment explanation
Indices: 37024209--37024310 Score: 95
Period size: 27 Copynumber: 3.8 Consensus size: 28
37024199 GCTTAGTTAT
*
37024209 CAGATATTGTGACAGAGTCACCA-AATA
1 CAGATATTGTGACAGAGCCACCAGAATA
*
37024236 CAGATATTGTGGCAGAGCCACCAGAAT-
1 CAGATATTGTGACAGAGCCACCAGAATA
* *
37024263 -AGATATTTGTGGCATAGCCACCAGAA-A
1 CAGATA-TTGTGACAGAGCCACCAGAATA
* * * *
37024290 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAGAGCCAC
37024311 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 5 0.08
27 53 0.80
28 8 0.12
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (28 bp):
CAGATATTGTGACAGAGCCACCAGAATA
Found at i:37025017 original size:27 final size:27
Alignment explanation
Indices: 37024985--37025260 Score: 353
Period size: 27 Copynumber: 10.3 Consensus size: 27
37024975 AAGGTATCTC
* *
37024985 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTA
* *
37025012 GTTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTA
* *
37025038 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTA
* *
37025065 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTA
*
37025092 GGTAATTCTACCCTACAGGGGTATTCCA
1 GGTAATTCTACCCTACAGGGGTATT-TA
* *
37025120 -GTAATTCTACCCTAAAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTA
37025146 GGTAATTCTACCCTACAGGGGTATTTCA
1 GGTAATTCTACCCTACAGGGGTATTT-A
* *
37025174 -GTAATGCTACCCTACAAGGGTATTCTA
1 GGTAATTCTACCCTACAGGGGTATT-TA
*
37025201 -GTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTA
* *
37025227 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTA
37025254 GGTAATT
1 GGTAATT
37025261 TCACAAATTA
Statistics
Matches: 221, Mismatches: 22, Indels: 12
0.87 0.09 0.05
Matches are distributed among these distances:
26 25 0.11
27 195 0.88
28 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTA
Found at i:37025163 original size:81 final size:81
Alignment explanation
Indices: 37024977--37025260 Score: 435
Period size: 81 Copynumber: 3.5 Consensus size: 81
37024967 TACCTCACAA
* * * * *
37024977 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGTTAATTCTACCCTACAGGGGTATTCGA-T
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCAGT
37025041 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* *
37025057 GGTATTTCGGTAATTCTACCTTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTCCAGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCAGT
*
37025122 AATTCTACCCTAAAGG
66 AATTCTACCCTACAGG
* * * *
37025138 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATGCTACCCTACAAGGGTATTCTAGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCAGT
37025203 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* *
37025219 GGTATTTTGGTAATTCTACCCTATAGGGGTATTTCGGTAATT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATT
37025261 TCACAAATTA
Statistics
Matches: 186, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
80 58 0.31
81 128 0.69
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCAGT
AATTCTACCCTACAGG
Found at i:37025276 original size:81 final size:80
Alignment explanation
Indices: 37024977--37025344 Score: 336
Period size: 81 Copynumber: 4.6 Consensus size: 80
37024967 TACCTCACAA
* * * * * *
37024977 GGTATCTCGGTAATTCCACCCTACAGGGGTATTT-TGTTAA-TTCTACCCTACAGGGGTATTCGA
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTTC-ACAC-ATAGGGGTATTCTA
37025040 -TAATTCTACCCTACAGG
63 GTAATTCTACCCTACAGG
* ** * * *
37025057 GGTATTTCGGTAATTCTACCTTACAGGGGTATTTTGGTAA-TTCTACCCTACAGGGGTATTCCAG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTC-ACAC-ATAGGGGTATTCTAG
*
37025121 TAATTCTACCCTAAAGG
64 TAATTCTACCCTACAGG
* *
37025138 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATGCTACCCTACA-A-GGGTATTCTA
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAAT--TTCAC-ACATAGGGGTATTCTA
37025201 GTAATTCTACCCTACAGG
63 GTAATTCTACCCTACAGG
* * * * * *
37025219 GGTATTTTGGTAATTCTACCCTATAGGGGTATTTCGGTAATTTCACAAATTAGGGGTATTTTGGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTCACACA-TAGGGGTATTCTAGT
* ** *
37025284 AATTTTA-CAAAGTAGG
65 AATTCTACCCTA-CAGG
** * *
37025300 GGTATTTTTGTAATTCTATCCTACAGGGGTATTTTAGTAATTTCA
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTCA
37025345 TAATCGAGGG
Statistics
Matches: 247, Mismatches: 31, Indels: 19
0.83 0.10 0.06
Matches are distributed among these distances:
78 2 0.01
79 3 0.01
80 59 0.24
81 177 0.72
82 1 0.00
83 2 0.01
84 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (80 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTCACACATAGGGGTATTCTAGTA
ATTCTACCCTACAGG
Found at i:37025287 original size:54 final size:54
Alignment explanation
Indices: 37024977--37025260 Score: 401
Period size: 54 Copynumber: 5.3 Consensus size: 54
37024967 TACCTCACAA
* * * *
37024977 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGTTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
* *
37025031 GGTA-TTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
* * * *
37025084 GGTATTTTGGTAATTCTACCCTACAGGGGTATTCCAGTAATTCTACCCTAAAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
* * *
37025138 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATGCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
* * *
37025192 GGTA-TTCTAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAGG
1 GGTATTTC-GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
37025246 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
37025261 TCACAAATTA
Statistics
Matches: 203, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
53 50 0.25
54 150 0.74
55 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
Found at i:37025307 original size:27 final size:26
Alignment explanation
Indices: 37025216--37025342 Score: 119
Period size: 27 Copynumber: 4.7 Consensus size: 26
37025206 TCTACCCTAC
* **
37025216 AGGGGTATTTTGGTAATTCTACCCTAT
1 AGGGGTATTTTGGTAATTTTA-CAAAT
* *
37025243 AGGGGTATTTCGGTAATTTCACAAATT
1 AGGGGTATTTTGGTAATTTTACAAA-T
37025270 AGGGGTATTTTGGTAATTTTACAAAGT
1 AGGGGTATTTTGGTAATTTTACAAA-T
* * ** *
37025297 AGGGGTATTTTTGTAATTCTATCCTAC
1 AGGGGTATTTTGGTAATTTTA-CAAAT
*
37025324 AGGGGTATTTTAGTAATTT
1 AGGGGTATTTTGGTAATTT
37025343 CATAATCGAG
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.02
27 79 0.95
28 2 0.02
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (26 bp):
AGGGGTATTTTGGTAATTTTACAAAT
Found at i:37025342 original size:54 final size:54
Alignment explanation
Indices: 37024985--37025341 Score: 382
Period size: 54 Copynumber: 6.6 Consensus size: 54
37024975 AAGGTATCTC
* * *
37024985 GGTAATTCCACCCTACAGGGGTATTT-TGTTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTT
* * *
37025038 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTT
* * *
37025092 GGTAATTCTACCCTACAGGGGTATTCCAGTAATTCTACCCTAAAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTT
* * *
37025146 GGTAATTCTACCCTACAGGGGTATTTCAGTAATGCTACCCTACAAGGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTT
* ** * *
37025200 AGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTT
** * ** * ** *
37025254 GGTAATT-T-CACAAATTAGGGGTATTTTGGTAATTTTA-CAAAGTAGGGGTATTTT
1 GGTAATTCTAC-CCTA-CAGGGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTTT
* * *
37025308 TGTAATTCTATCCTACAGGGGTATTTTAGTAATT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATT
37025342 TCATAATCGA
Statistics
Matches: 258, Mismatches: 39, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.00
53 49 0.19
54 205 0.79
55 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTT
Found at i:37025384 original size:27 final size:27
Alignment explanation
Indices: 37025346--37025556 Score: 235
Period size: 27 Copynumber: 7.8 Consensus size: 27
37025336 GTAATTTCAT
37025346 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
37025373 AA-CTAAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* *
37025400 AATCGAAGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
37025427 AATCGAGGGTGAAACAGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
** * **
37025454 AATCGAGGGTAAAATAGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
37025481 AATCGAGGGTAAAACTGTAATTTGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
37025508 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
37025535 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
37025557 CTACAAATCA
Statistics
Matches: 152, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 150 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:37025449 original size:81 final size:81
Alignment explanation
Indices: 37025346--37025569 Score: 301
Period size: 81 Copynumber: 2.8 Consensus size: 81
37025336 GTAATTTCAT
* * * * **
37025346 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTAAGGGTAAAATGGTAATTTTGTAAATCGAAGGT
1 AATCGAGGGTGAAACGGTAATTTTATAAATC-GAGGGTAAAATGGTAATTCTACAAATCGAAGGT
37025410 AAAACGGTAATTCT-GTA
65 AAAACGGTAATT-TGGTA
* * *
37025427 AATCGAGGGTGAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTACAAATCGAGGGTA
1 AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTA
*
37025492 AAACTGTAATTTGGTA
66 AAACGGTAATTTGGTA
* *
37025508 AATTGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATC-AAGG
1 AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGG
37025570 GCATTTCAGT
Statistics
Matches: 126, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
80 4 0.03
81 121 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTA
AAACGGTAATTTGGTA
Found at i:37027140 original size:17 final size:16
Alignment explanation
Indices: 37027118--37027149 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
37027108 GTATATACTA
37027118 AAAACTATAGTTAAACC
1 AAAACTATAG-TAAACC
37027135 AAAACTATAGTAAAC
1 AAAACTATAGTAAAC
37027150 TACTAGAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAACTATAGTAAACC
Found at i:37033559 original size:49 final size:49
Alignment explanation
Indices: 37033487--37033718 Score: 241
Period size: 49 Copynumber: 4.7 Consensus size: 49
37033477 AAGCTATCTT
* *
37033487 GTACACATAGTAGTCTGCACTTAGTACTACACATGCGACCAATTATTC-G
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCGG
* ** *
37033536 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCGG
* * * * *
37033586 ATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGG
** * * * **
37033637 GTATGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCCA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGG
* *
37033686 GTACATGTAGTAGCCTGCACTTAGTACCACACA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACA
37033719 CGTGACCGCA
Statistics
Matches: 150, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 71 0.47
50 44 0.29
51 35 0.23
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGG
Found at i:37033720 original size:100 final size:101
Alignment explanation
Indices: 37033543--37033723 Score: 267
Period size: 100 Copynumber: 1.8 Consensus size: 101
37033533 TCGGTACACG
** * *
37033543 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCAGATACACGTAGTAGCCTACACTT
*
37033608 AGTACTACACACGTGATCGAAGTTATCGGGTATGCA
66 AGTACCACACACGTGATCGAAGTTATCGGGTATGCA
* * *
37033644 TAGTAGCCTGCACTTAGTACTACACATACGACC-AATAATCCAG-TACATGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAAT-CAGATACACGTAGTAGCCTACACT
37033707 TAGTACCACACACGTGA
65 TAGTACCACACACGTGA
37033724 CCGCACAATA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
100 38 0.54
101 33 0.46
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCAGATACACGTAGTAGCCTACACTT
AGTACCACACACGTGATCGAAGTTATCGGGTATGCA
Found at i:37038788 original size:40 final size:40
Alignment explanation
Indices: 37038552--37038774 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
37038542 TTGAATGATG
* * * *
37038552 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37038592 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37038632 TCCGGGCTAAG-CCCGAAGGCATTTGT--GAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37038669 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37038709 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37038750 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37038775 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
37 19 0.12
38 15 0.09
39 14 0.09
40 105 0.64
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37046665 original size:79 final size:81
Alignment explanation
Indices: 37046529--37046713 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
37046519 TTGAATGATG
*
37046529 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37046593 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
37046608 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37046670 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
37046688 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37046714 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:37046727 original size:40 final size:40
Alignment explanation
Indices: 37046530--37046713 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
37046520 TGAATGATGT
* * * *
37046530 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
37046570 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
37046610 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37046648 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37046689 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37046714 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37046735 original size:79 final size:79
Alignment explanation
Indices: 37046582--37046746 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
37046572 GGACTAAGAT
* **
37046582 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37046647 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37046661 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37046724 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37046740 CCGAAGG
1 CCGAAGG
37046747 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37054793 original size:10 final size:10
Alignment explanation
Indices: 37054743--37054802 Score: 63
Period size: 11 Copynumber: 6.0 Consensus size: 10
37054733 TTATAATTCG
37054743 TAATAATTTT
1 TAATAATTTT
37054753 TAAATAATTTAT
1 T-AATAATTT-T
*
37054765 TAAT--TTAT
1 TAATAATTTT
37054773 TAATAAATTTT
1 TAAT-AATTTT
37054784 T-ATAATTTT
1 TAATAATTTT
37054793 TAATAATTTT
1 TAATAATTTT
37054803 AAATGTCTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
8 5 0.12
9 9 0.21
10 11 0.26
11 15 0.36
12 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TAATAATTTT
Found at i:37054800 original size:31 final size:30
Alignment explanation
Indices: 37054743--37054801 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
37054733 TTATAATTCG
*
37054743 TAATAATTTTTAAATAATTTATTAATTTAT
1 TAATAATTTTTAAATAATTTAATAATTTAT
*
37054773 TAATAAATTTTTATAAT-TTTTAATAATTT
1 TAAT-AATTTTTA-AATAATTTAATAATTT
37054802 TAAATGTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.16
31 18 0.72
32 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TAATAATTTTTAAATAATTTAATAATTTAT
Found at i:37054802 original size:19 final size:19
Alignment explanation
Indices: 37054745--37054802 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 19
37054735 ATAATTCGTA
*
37054745 ATAATTTTTAAATAATTTAT
1 ATAATTTTT-AATAATTTTT
37054765 -TAATTTATTAATAAATTTTT
1 ATAATTT-TTAAT-AATTTTT
37054785 ATAATTTTTAATAATTTT
1 ATAATTTTTAATAATTTT
37054803 AAATGTCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 15 0.44
20 13 0.38
21 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATAATTTTTAATAATTTTT
Found at i:37064823 original size:40 final size:40
Alignment explanation
Indices: 37064753--37064890 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
37064743 AAGCCAAGTA
* * * * *
37064753 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
37064792 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37064832 CCTTCGGGACTTAGCCTGGA-ACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37064872 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37064891 TTATCATCCA
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 13 0.15
40 74 0.85
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37073037 original size:40 final size:40
Alignment explanation
Indices: 37072981--37073064 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
37072971 CGGGATTTAA
* * *
37072981 CCGGATATAGCTACTCGCTCGAATACCTTCGGGACATAGC
1 CCGGATATAGCTACTCGCACAAATACCTTCGAGACATAGC
* *
37073021 CCGGATATAG-TAACTCGCACAAATGCCTTCGAGACTTAGC
1 CCGGATATAGCT-ACTCGCACAAATACCTTCGAGACATAGC
37073061 CCGG
1 CCGG
37073065 TTATCATCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCGGATATAGCTACTCGCACAAATACCTTCGAGACATAGC
Found at i:37075212 original size:40 final size:40
Alignment explanation
Indices: 37075134--37075326 Score: 298
Period size: 40 Copynumber: 4.8 Consensus size: 40
37075124 TATCTAGCAC
* * **
37075134 AGCCTGCAGGTTTTTAA-CCCGGATGTCATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGA
* *
37075173 AGCCTGCGGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGA
*
37075213 AGCCTACGGGTCTTTAAGCCCGGATACCATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGA
*
37075253 AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGA
*
37075293 AGCCTGCGGGTCTTTAAGCCTGGATACCATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCA
37075327 CATCAAATAA
Statistics
Matches: 140, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 15 0.11
40 125 0.89
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCAGCACGA
Found at i:37078696 original size:40 final size:40
Alignment explanation
Indices: 37078640--37078824 Score: 284
Period size: 40 Copynumber: 4.6 Consensus size: 40
37078630 CAGATGATAA
*
37078640 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
37078680 CCGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTGACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTGACTATAT
*
37078720 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
37078760 CCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
37078800 CCGGGCTAAGTCCCGAAGGAATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37078825 AGCAAGTAGT
Statistics
Matches: 136, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 1 0.01
40 133 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:37078839 original size:80 final size:79
Alignment explanation
Indices: 37078636--37078855 Score: 275
Period size: 80 Copynumber: 2.8 Consensus size: 79
37078626 TATTCAGATG
* * *
37078636 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTC-CCGAAAG
37078699 CATTTGTGCGAGTGACT
63 CATTTGTGCGAGTGACT
* * *
37078716 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAAGCA
*
37078781 TTTGTGCGAGTTACT
65 TTTGTGCGAGTGACT
* * * *
37078796 ATAACCGGGCTAAGTCCCGAAGGAATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAA
37078856 GATGCTTGGG
Statistics
Matches: 125, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
79 15 0.12
80 107 0.86
81 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAAGCAT
TTGTGCGAGTGACT
Found at i:37079123 original size:22 final size:21
Alignment explanation
Indices: 37079082--37079125 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
37079072 GAATGTGCAT
37079082 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
37079104 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
37079126 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:37081146 original size:22 final size:23
Alignment explanation
Indices: 37081121--37081163 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
37081111 AAAGCCGAGG
37081121 AGCTCAGTAT-GGAG-AAAAGAAA
1 AGCTCA-TATGGGAGCAAAAGAAA
*
37081143 AGCTGATATGGGAGCAAAAGA
1 AGCTCATATGGGAGCAAAAGA
37081164 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.17
22 9 0.50
23 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (23 bp):
AGCTCATATGGGAGCAAAAGAAA
Found at i:37084595 original size:37 final size:37
Alignment explanation
Indices: 37084545--37084623 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37084535 TTATTACGAA
* * *
37084545 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37084582 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37084619 GTCTT
1 GTCTT
37084624 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37084827 original size:47 final size:47
Alignment explanation
Indices: 37084784--37085309 Score: 827
Period size: 47 Copynumber: 11.1 Consensus size: 47
37084774 TTGGCCACTC
*
37084784 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
37084831 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* * * *
37084878 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* * *
37084925 GGCCTTATCACACATATGCACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* * * * *
37084972 GGCCCTATCACACATATACACATTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* *
37085019 GGCCTTAACACACATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
37085066 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* *
37085113 GGCCTTGTCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
37085160 GGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* *
37085207 GGCCTTATCACGTATATACACTTTCACATTCATGACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
37085254 GGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
37085303 GGCCTTA
1 GGCCTTA
37085310 CTATCATTTC
Statistics
Matches: 450, Mismatches: 27, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
47 410 0.91
49 40 0.09
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
Found at i:37088876 original size:42 final size:40
Alignment explanation
Indices: 37088751--37089017 Score: 290
Period size: 42 Copynumber: 6.9 Consensus size: 40
37088741 CGAATACACG
* * * * *
37088751 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * *
37088791 ACACCAGCA-GAATGCTCTTCGGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
37088829 TCACTAGCACGAATGCTCTTCGGAAACTTAGCCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-GACTTAG-CCCGGATACA
37088871 TCACTAGCATGAATGCTC-TC-GGACTTAG-CC-GAT--A
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
37088905 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
37088945 TCACTCAGCATGAATGCTCCTCGCGGACTTAGCCCGGATACA
1 TCACT-AGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
37088987 T-AC-AGCATGAAT-CTCTTC-GGACTT-GCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
37089018 CATATTCAAA
Statistics
Matches: 199, Mismatches: 16, Indels: 29
0.82 0.07 0.12
Matches are distributed among these distances:
34 19 0.10
35 9 0.05
36 17 0.09
37 4 0.02
38 26 0.13
39 41 0.21
40 15 0.08
41 24 0.12
42 44 0.22
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:37088919 original size:76 final size:80
Alignment explanation
Indices: 37088751--37089007 Score: 252
Period size: 80 Copynumber: 3.3 Consensus size: 80
37088741 CGAATACACG
* * * * * * * *
37088751 TCACCAGCATGATTGCTCTTCGG-GACCTAGCCCGGACATAACAC-CAGCA-GAATGCT-CTTCG
1 TCACTAGCATGAATGCTCTTCGGAAACTTAGCCCGGATACATCACTCAGCATGAATGCTCCTCCG
** *
37088812 GGTTTAGCACGGATATA
66 GACTTAGCCCGG--ATA
*
37088829 TCACTAGCACGAATGCTCTTCGGAAACTTAGCCCCGGATACATCACT-AGCATGAATGCT-CT-C
1 TCACTAGCATGAATGCTCTTCGGAAACTTAG-CCCGGATACATCACTCAGCATGAATGCTCCTCC
37088891 GGACTTAG-CC-GATA
65 GGACTTAGCCCGGATA
*
37088905 TCACTAGCATGAATGCTCTTCGG-GACTTAGCCCGGATACATCACTCAGCATGAATGCTCCTCGC
1 TCACTAGCATGAATGCTCTTCGGAAACTTAGCCCGGATACATCACTCAGCATGAATGCTCCTC-C
37088969 GGACTTAGCCCGGATA
65 GGACTTAGCCCGGATA
37088985 -CA-TACAGCATGAAT-CTCTTCGGA
1 TCACT--AGCATGAATGCTCTTCGGA
37089008 CTTGCCCGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 24
0.81 0.07 0.13
Matches are distributed among these distances:
74 15 0.10
75 18 0.12
76 27 0.18
78 31 0.20
79 18 0.12
80 35 0.23
81 9 0.06
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGAAACTTAGCCCGGATACATCACTCAGCATGAATGCTCCTCCG
GACTTAGCCCGGATA
Found at i:37090121 original size:94 final size:94
Alignment explanation
Indices: 37090018--37090235 Score: 274
Period size: 94 Copynumber: 2.4 Consensus size: 94
37090008 CACATCCGCC
**
37090018 ATTACGCCTTTTTCACTATATAC-CTTTC-CAATTCATCACATCGGGCTATTAGCCCTTATCACA
1 ATTACGCCTTTCACAC-ATATACACTTTCAC-ATTCATCACATC-GGCTATTAGCCCTTATCACA
37090081 CACATACAC-TT-CACATTCTCATCACGCGGCT
63 CA-ATACACATTCCACATTCTCATCACGCGGCT
* *
37090112 ATTAGGCCTTTCACACATATGCACTTTCACATTCATCACATCGGCTATTAGCCCTTATCACACAA
1 ATTACGCCTTTCACACATATACACTTTCACATTCATCACATCGGCTATTAGCCCTTATCACACAA
37090177 TACACATTCCACA-T-TCATCACGTCGG-T
66 TACACATTCCACATTCTCATCACG-CGGCT
**
37090204 ATT--GCCTCACACACATATACACTTTCACATTC
1 ATTACGCCTTTCACACATATACACTTTCACATTC
37090236 CATTCAGTCG
Statistics
Matches: 112, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
90 26 0.23
92 18 0.16
93 33 0.29
94 34 0.30
95 1 0.01
ACGTcount: A:0.28, C:0.33, G:0.08, T:0.32
Consensus pattern (94 bp):
ATTACGCCTTTCACACATATACACTTTCACATTCATCACATCGGCTATTAGCCCTTATCACACAA
TACACATTCCACATTCTCATCACGCGGCT
Found at i:37090141 original size:47 final size:49
Alignment explanation
Indices: 37090035--37090281 Score: 228
Period size: 47 Copynumber: 5.4 Consensus size: 49
37090025 CTTTTTCACT
* * *
37090035 ATATAC-CTTTC-CAAT-TCATCACATCGGGCTATTAGCCCTTATCACAC
1 ATATACACTTTCACATTCTCATCACGTC-GGCTATTAGGCCTTATCACAC
*
37090082 ACATACAC-TTCACATTCTCATCACG-CGGCTATTAGGCCTT-TCACAC
1 ATATACACTTTCACATTCTCATCACGTCGGCTATTAGGCCTTATCACAC
* * *
37090128 ATATGCACTTTCACA-T-TCATCACATCGGCTATTAGCCCTTATCACAC
1 ATATACACTTTCACATTCTCATCACGTCGGCTATTAGGCCTTATCACAC
* *
37090175 A-ATACACATTCCACA-T-TCATCACGTCGG-TATT--GCCTCA-CACAC
1 ATATACAC-TTTCACATTCTCATCACGTCGGCTATTAGGCCTTATCACAC
*
37090218 ATATACACTTTCACATTC-CATTCA-GTC-GC-CTTAGGCCTTATCACAC
1 ATATACACTTTCACATTCTCA-TCACGTCGGCTATTAGGCCTTATCACAC
37090264 -TATACACTCTTCACATTC
1 ATATACACT-TTCACATTC
37090282 ATCACATCGG
Statistics
Matches: 168, Mismatches: 16, Indels: 33
0.77 0.07 0.15
Matches are distributed among these distances:
43 15 0.09
44 16 0.10
45 23 0.14
46 50 0.30
47 52 0.31
48 5 0.03
49 7 0.04
ACGTcount: A:0.28, C:0.33, G:0.09, T:0.31
Consensus pattern (49 bp):
ATATACACTTTCACATTCTCATCACGTCGGCTATTAGGCCTTATCACAC
Found at i:37090279 original size:89 final size:92
Alignment explanation
Indices: 37090035--37090302 Score: 279
Period size: 89 Copynumber: 2.9 Consensus size: 92
37090025 CTTTTTCACT
37090035 ATATAC-CTTTC-CAATTCATCACATCGGGCTATTAGCCCTTATCACACACATACA--CTTCACA
1 ATATACACTTTCAC-ATTCATCACATC-GGCTATTAGCCCTTATCACACA-ATACACTCTTCACA
**
37090096 TTCTCATCACG-CGGCTATTAGGCCTTTCACAC
63 -T-TCATCACGTCGGCTATTA-GCCTCACACAC
* *
37090128 ATATGCACTTTCACATTCATCACATCGGCTATTAGCCCTTATCACACAATACACAT-TCCACATT
1 ATATACACTTTCACATTCATCACATCGGCTATTAGCCCTTATCACACAATACAC-TCTTCACATT
37090192 CATCACGTCGG-TATT-GCCTCACACAC
65 CATCACGTCGGCTATTAGCCTCACACAC
* * * *
37090218 ATATACACTTTCACATTCCATTCA-GTC-GC-CTTAGGCCTTATCACACTATACACTCTTCACAT
1 ATATACACTTTCACATT-CA-TCACATCGGCTATTAGCCCTTATCACACAATACACTCTTCACAT
* *
37090280 TCATCACATCGGCCATTTAGCCT
64 TCATCACGTCGGCTA-TTAGCCT
37090303 ATTTGTCATC
Statistics
Matches: 151, Mismatches: 12, Indels: 25
0.80 0.06 0.13
Matches are distributed among these distances:
88 1 0.01
89 38 0.25
90 28 0.19
91 6 0.04
92 24 0.16
93 31 0.21
94 22 0.15
95 1 0.01
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.31
Consensus pattern (92 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGCCCTTATCACACAATACACTCTTCACATTC
ATCACGTCGGCTATTAGCCTCACACAC
Found at i:37093034 original size:40 final size:40
Alignment explanation
Indices: 37092952--37093135 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
37092942 GCTACTCGTT
*
37092952 CAAATGCCTTCGGGACATAG-CCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37092991 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37093031 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
37093070 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
37093111 CAAAT-CCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37093136 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 51 0.40
40 59 0.47
41 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.