Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 110 of 343
Found at i:37093062 original size:79 final size:82
Alignment explanation
Indices: 37092952--37093135 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
37092942 GCTACTCGTT
* *
37092952 CAAATGCCTTCGGGACATAG-CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37093014 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37093031 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37093094 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37093111 CAAAT-CCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37093136 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 7 0.08
79 63 0.69
80 21 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37102301 original size:15 final size:15
Alignment explanation
Indices: 37102283--37102316 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37102273 TATTACTTTC
37102283 ATGTTAATTATTAAT
1 ATGTTAATTATTAAT
* *
37102298 ATGTTAATTTTTATT
1 ATGTTAATTATTAAT
37102313 ATGT
1 ATGT
37102317 AGTGGGCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (15 bp):
ATGTTAATTATTAAT
Found at i:37108023 original size:11 final size:11
Alignment explanation
Indices: 37108008--37108037 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
37107998 GAGTGAACTA
37108008 AGAGAATTAAG
1 AGAGAATTAAG
*
37108019 TGAGAATTAAG
1 AGAGAATTAAG
37108030 AGAGAATT
1 AGAGAATT
37108038 GAGAATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (11 bp):
AGAGAATTAAG
Found at i:37112376 original size:28 final size:29
Alignment explanation
Indices: 37112337--37112437 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 29
37112327 AGTTATTTTG
*
37112337 CTATTTTGTTATTAAAATTAATTAATT-TTA
1 CTATTTTATTATTAAAATTAA-T-ATTATTA
*
37112367 -T-TTTTATTATTAATATTAATATTATTA
1 CTATTTTATTATTAAAATTAATATTATTA
** *
37112394 CTATTTTATTATTATTATTACTATTATTA
1 CTATTTTATTATTAAAATTAATATTATTA
* *
37112423 TTATTATTGTTATTA
1 CTATT-TTATTATTA
37112438 TTATTATTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.05
27 4 0.07
28 17 0.28
29 29 0.48
30 8 0.13
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (29 bp):
CTATTTTATTATTAAAATTAATATTATTA
Found at i:37112378 original size:3 final size:3
Alignment explanation
Indices: 37112364--37112495 Score: 146
Period size: 3 Copynumber: 45.3 Consensus size: 3
37112354 TTAATTAATT
* * * *
37112364 TTA TTT TTA TTA TTA ATA TTA ATA TTA TTA CTA TT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
37112411 TTA CTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TT- TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
37112457 TTA TTA CTA TT- GTA TTA CTA TTA TTA TTA TCA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
37112496 ATTTTCTTTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
2 7 0.07
3 99 0.93
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:37112695 original size:3 final size:3
Alignment explanation
Indices: 37112689--37112738 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
37112679 TTTGTATTTG
** * * *
37112689 TTA TTA TTA TTA TTA TTA TTA TTA CCA TCA TCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37112737 TT
1 TT
37112739 TTTAAATCCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:37112895 original size:19 final size:19
Alignment explanation
Indices: 37112867--37112909 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37112857 ACCCTTTTTT
37112867 TAATTTA-T-TTTTA-TTA
1 TAATTTATTATTTTACTTA
37112883 TAATTTATTATTTTACTTA
1 TAATTTATTATTTTACTTA
*
37112902 TTATTTAT
1 TAATTTAT
37112910 CGATTTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 7 0.30
17 1 0.04
18 5 0.22
19 10 0.43
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TAATTTATTATTTTACTTA
Found at i:37115535 original size:21 final size:21
Alignment explanation
Indices: 37115510--37115554 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
37115500 TTCTGTTCTG
*
37115510 CTCTG-CTGCCATCGCTGTTGC
1 CTCTGCCT-CCATCGCTGCTGC
*
37115531 CTCTGCCTCCCTCGCTGCTGC
1 CTCTGCCTCCATCGCTGCTGC
37115552 CTC
1 CTC
37115555 CGCTCTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.02, C:0.47, G:0.20, T:0.31
Consensus pattern (21 bp):
CTCTGCCTCCATCGCTGCTGC
Found at i:37115990 original size:13 final size:14
Alignment explanation
Indices: 37115964--37115992 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37115954 ACTAACGACG
37115964 AATTAAACCATTAT
1 AATTAAACCATTAT
37115978 AATTAAA-CATTAT
1 AATTAAACCATTAT
37115991 AA
1 AA
37115993 ATATTTGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:37121060 original size:9 final size:9
Alignment explanation
Indices: 37121046--37121117 Score: 69
Period size: 9 Copynumber: 8.2 Consensus size: 9
37121036 TAAGTATAAT
37121046 TAAGTTATG
1 TAAGTTATG
37121055 TAAGTTATG
1 TAAGTTATG
* * *
37121064 ATATGATATA
1 -TAAGTTATG
*
37121074 T-ATTTATG
1 TAAGTTATG
37121082 T-A-TTATG
1 TAAGTTATG
37121089 TAAGTTATG
1 TAAGTTATG
*
37121098 TAAATTATG
1 TAAGTTATG
37121107 TAAGTTATG
1 TAAGTTATG
37121116 TA
1 TA
37121118 TTATGTATGG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 6 0.12
8 6 0.12
9 33 0.65
10 6 0.12
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:37121088 original size:34 final size:34
Alignment explanation
Indices: 37121050--37121124 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
37121040 TATAATTAAG
* *
37121050 TTATGTAAGTTATG-ATATGATATATATTTATGTA
1 TTATGTAAGTTATGTAAATGATATA-AGTTATGTA
* *
37121084 TTATGTAAGTTATGTAAATTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAATGATATAAGTTATGTA
37121118 TTATGTA
1 TTATGTA
37121125 TGGCATAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAATGATATAAGTTATGTA
Found at i:37121246 original size:30 final size:30
Alignment explanation
Indices: 37121212--37121323 Score: 111
Period size: 30 Copynumber: 3.6 Consensus size: 30
37121202 TAATTTTATG
*
37121212 TAAATTATATAAGTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAAATTTGATCTT
* *
37121242 TAAATTATGTAAGTCATG-TATTATGTAAGT-TAT
1 TAAATTATGTAAGTTATGAAATT-TG--A-TCT-T
* *
37121275 GTAAATTATGTAAGTTATGAAATTCGAACTT
1 -TAAATTATGTAAGTTATGAAATTTGATCTT
37121306 TAAATTATGTAAGTTATG
1 TAAATTATGTAAGTTATG
37121324 TATTATGCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
29 3 0.04
30 36 0.54
31 1 0.01
32 4 0.06
33 2 0.03
34 18 0.27
35 3 0.04
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.44
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGATCTT
Found at i:37121266 original size:16 final size:17
Alignment explanation
Indices: 37121244--37121289 Score: 67
Period size: 16 Copynumber: 2.7 Consensus size: 17
37121234 TTGATCTTTA
37121244 AATTATGTAAGTCATGT
1 AATTATGTAAGTCATGT
*
37121261 -ATTATGTAAGTTATGT
1 AATTATGTAAGTCATGT
37121277 AAATTATGTAAGT
1 -AATTATGTAAGT
37121290 TATGAAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 15 0.58
18 11 0.42
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.43
Consensus pattern (17 bp):
AATTATGTAAGTCATGT
Found at i:37121274 original size:9 final size:9
Alignment explanation
Indices: 37121242--37121349 Score: 82
Period size: 9 Copynumber: 12.1 Consensus size: 9
37121232 ATTTGATCTT
37121242 TAAATTATG
1 TAAATTATG
* *
37121251 TAAGTCATG
1 TAAATTATG
37121260 T--ATTATG
1 TAAATTATG
*
37121267 TAAGTTATG
1 TAAATTATG
37121276 TAAATTATG
1 TAAATTATG
*
37121285 TAAGTTATG
1 TAAATTATG
*
37121294 -AAATTCGAACTT
1 TAAATT---A-TG
37121306 TAAATTATG
1 TAAATTATG
*
37121315 TAAGTTATG
1 TAAATTATG
37121324 T--ATTATG
1 TAAATTATG
*
37121331 CAAATTATG
1 TAAATTATG
37121340 TAAATTATG
1 TAAATTATG
37121349 T
1 T
37121350 GAGTTGCTAG
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
7 10 0.13
8 4 0.05
9 54 0.71
10 1 0.01
11 1 0.01
12 1 0.01
13 5 0.07
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.44
Consensus pattern (9 bp):
TAAATTATG
Found at i:37121348 original size:64 final size:64
Alignment explanation
Indices: 37121207--37121354 Score: 233
Period size: 64 Copynumber: 2.3 Consensus size: 64
37121197 TGTGTTAATT
* * * * *
37121207 TTATGTAAATTATATAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATTATGTAAG
1 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTCATGTATTATGCAAA
*
37121271 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTTATGTATTATGCAAA
1 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTCATGTATTATGCAAA
*
37121335 TTATGTAAATTATGTGAGTT
1 TTATGTAAATTATGTAAGTT
37121355 GCTAGTGAAC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 77 1.00
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (64 bp):
TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTCATGTATTATGCAAA
Found at i:37121695 original size:99 final size:98
Alignment explanation
Indices: 37121459--37121797 Score: 585
Period size: 99 Copynumber: 3.5 Consensus size: 98
37121449 AATAAAATAG
* * *
37121459 AATATTTAAAATAAAACTTTAAATACAATTTATTTTAATTATGTAATGTTAAAATAAAATAAATT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
*
37121524 ATTTAAATTATTTTTCGTGATTCAAAAAAATGA
66 ATTAAAATTATTTTTCGTGATTCAAAAAAATGA
37121557 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
37121622 ATTAAAATTATTTTTCGTGATTCAAACAAAATGA
66 ATTAAAATTATTTTTCGTGATTCAAA-AAAATGA
37121656 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
*
37121721 ATTAAAATTAGTTTTCGTGATTC-AAAAAA--A
66 ATTAAAATTATTTTTCGTGATTCAAAAAAATGA
* *
37121751 AATATTTAAAATGAAACTTTAAATATAATTTAATTTAATTAGGTAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAAT
37121798 TTGATATACT
Statistics
Matches: 233, Mismatches: 7, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
95 46 0.20
97 4 0.02
98 89 0.38
99 94 0.40
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (98 bp):
AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
ATTAAAATTATTTTTCGTGATTCAAAAAAATGA
Found at i:37125597 original size:13 final size:13
Alignment explanation
Indices: 37125579--37125612 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
37125569 ACCCAAATAC
37125579 CCTAAACTTTAAA
1 CCTAAACTTTAAA
*
37125592 CCTAAATTTTAAA
1 CCTAAACTTTAAA
37125605 CTCTAAAC
1 C-CTAAAC
37125613 CCTAATTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (13 bp):
CCTAAACTTTAAA
Found at i:37125823 original size:21 final size:21
Alignment explanation
Indices: 37125794--37125833 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37125784 ACAAACAACA
*
37125794 AAATTTAAAA-AACTAAACCCC
1 AAATCTAAAATAAC-AAACCCC
37125815 AAATCTAAAATAACAAACC
1 AAATCTAAAATAACAAACC
37125834 ATAAACTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (21 bp):
AAATCTAAAATAACAAACCCC
Found at i:37126313 original size:18 final size:17
Alignment explanation
Indices: 37126290--37126324 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37126280 AAAGTTAGTT
*
37126290 TCAAATATCAAAATAAAA
1 TCAAAT-TCAAAACAAAA
37126308 TCAAATTCAAAACAAAA
1 TCAAATTCAAAACAAAA
37126325 ATAAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (17 bp):
TCAAATTCAAAACAAAA
Found at i:37126468 original size:41 final size:41
Alignment explanation
Indices: 37126399--37126518 Score: 100
Period size: 41 Copynumber: 2.9 Consensus size: 41
37126389 AAATGGCTGC
* * *
37126399 TCAACTTTTTATGGCATTTGGATAAAAAATGGCGCTATATA
1 TCAACTATTTATGGCATTTGGATAAAAAACGCCGCTATATA
* * * *
37126440 TCAACTATTTGTGGCATTT-GTTAAAAAAACGCCGCTATTTC
1 TCAACTATTTATGGCATTTGGAT-AAAAAACGCCGCTATATA
* * * **
37126481 TCAA-TTTTTAGCGGCGTTTGGACCAAAAACGCCGCTAT
1 TCAACTATTTA-TGGCATTTGGATAAAAAACGCCGCTAT
37126519 TACTCAGTTT
Statistics
Matches: 62, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
40 6 0.10
41 55 0.89
42 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (41 bp):
TCAACTATTTATGGCATTTGGATAAAAAACGCCGCTATATA
Found at i:37126530 original size:41 final size:41
Alignment explanation
Indices: 37126464--37126577 Score: 183
Period size: 41 Copynumber: 2.8 Consensus size: 41
37126454 CATTTGTTAA
* * *
37126464 AAAAACGCCGCTATTTCTCAATTTTTAGCGGCGTTTGGACC
1 AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTTCGACC
37126505 AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTTCGACC
1 AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTTCGACC
* *
37126546 AAAAATGCCGTTATTACTCAGTTTTTAGCGGC
1 AAAAACGCCGCTATTACTCAGTTTTTAGCGGC
37126578 TGCTAATGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (41 bp):
AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTTCGACC
Found at i:37126627 original size:12 final size:12
Alignment explanation
Indices: 37126612--37126636 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37126602 TTTTTTGTCT
37126612 AAACGCCACTAA
1 AAACGCCACTAA
37126624 AAACGCCACTAA
1 AAACGCCACTAA
37126636 A
1 A
37126637 GCCCTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (12 bp):
AAACGCCACTAA
Found at i:37129846 original size:40 final size:40
Alignment explanation
Indices: 37129786--37130010 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
37129776 TATTCGGATG
* *
37129786 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
37129826 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAAT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
37129866 ATA-TCAGGGAGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATTC-GGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
37129909 ATACTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
37129949 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
37129989 ATA-TCCGGCTAAATCCCGAAGG
1 ATATTCGGGCTAAGTCCCGAAGG
37130011 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
39 17 0.11
40 104 0.68
43 31 0.20
44 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:37130029 original size:83 final size:80
Alignment explanation
Indices: 37129786--37130010 Score: 335
Period size: 83 Copynumber: 2.8 Consensus size: 80
37129776 TATTCGGATG
* *
37129786 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATTCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATACTCGGGCTAAGTCCCGAAGGCA
37129851 TTTGTGCTAGTGAAT
66 TTTGTGCTAGTGAAT
* **
37129866 ATATCAGGGAGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACTCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATACTCGGGCTAAGTCCCGAAG
*
37129931 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGAAT
* * *
37129949 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-TCCGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATACTCGGGCTAAGTCCCGAAGG
37130011 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 17 0.13
80 39 0.30
81 1 0.01
82 1 0.01
83 72 0.55
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATACTCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGAAT
Found at i:37132483 original size:28 final size:25
Alignment explanation
Indices: 37132398--37132515 Score: 83
Period size: 27 Copynumber: 4.4 Consensus size: 25
37132388 ATATACTAGT
37132398 GAACCCCAGCTCACCAATCCAATTGGC
1 GAACCCCAGCTCACCAA-CCAA-TGGC
* * *
37132425 GAACCCTAACTCACCAAACCTATAGGC
1 GAACCCCAGCTCACC-AACCAAT-GGC
*
37132452 GAACCCCCAGCTCACCAGACCAACTGGT
1 GAA-CCCCAGCTCACCA-ACCAA-TGGC
* **
37132480 GAACCCTAGCTTGCCAAACCAACTGGC
1 GAACCCCAGCTCACC-AACCAA-TGGC
*
37132507 GAGCCCCAG
1 GAACCCCAG
37132516 TTCGCTAAAC
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
26 1 0.01
27 48 0.67
28 22 0.31
29 1 0.01
ACGTcount: A:0.31, C:0.40, G:0.17, T:0.13
Consensus pattern (25 bp):
GAACCCCAGCTCACCAACCAATGGC
Found at i:37137681 original size:55 final size:55
Alignment explanation
Indices: 37137562--37137683 Score: 127
Period size: 55 Copynumber: 2.2 Consensus size: 55
37137552 CTTCCAAAAC
* * ** *
37137562 AACACGGGCGTGCGACACGCCCGTGCCTTGAAACCGTGGCCAAACCTGTCAAATT
1 AACACAGGCGTGCGACACGCACGTGCCAAGAAACCGTGGCCAAACCTATCAAATT
* * * * * *
37137617 AACACAGGCGTGCGACACGCATGTGCCAAGCAACCGTGGTCGAACCTATTAGATT
1 AACACAGGCGTGCGACACGCACGTGCCAAGAAACCGTGGCCAAACCTATCAAATT
* *
37137672 CACATAGGCGTG
1 AACACAGGCGTG
37137684 AGACTATATA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.17
Consensus pattern (55 bp):
AACACAGGCGTGCGACACGCACGTGCCAAGAAACCGTGGCCAAACCTATCAAATT
Found at i:37148907 original size:766 final size:739
Alignment explanation
Indices: 37146224--37149748 Score: 2594
Period size: 743 Copynumber: 4.7 Consensus size: 739
37146214 GATAGGCCGT
* * * * * *
37146224 AGCCCTTACCCAACATCTTTTTTACTCTCATTGTCAATATGGCATTAGACATAAATTAAGGTCAC
1 AGCCCTTACCCAACATCTTTTCTACTTTCATTGTC-ATATGGCAATAGACATAAATTGAGCTCGC
* * * *** * * * * *
37146289 TCACCTGCCACTACAATTT-CCTGGTCTTCACTATTTTACAAAGGGACTCTTTTCAATTTGAAGT
65 TCACCTACCACTACAATTTCCCT-GCCTTCACTGTTTCGTAAAGTGACTTTTTTTAGTTCGAAGT
*
37146353 CAATCTTGGCTTTATGCTCAGCCAACCAATTCATCCCCAAGATTACATCAAACACATAGAATGGA
129 CAATCTTGGCTTTATGCTCAGCCAACCAATCCAT-CCCAAGATTACATCAAACACATAGAATGGA
* * * * * * * * *
37146418 AACTTCTA-AAACTTTGCGTAGAAAACTTGGCCTTGGATTAGTAAAGAACA-CTTGTGGTACACT
193 AAC-TCTATCAA-GTT-CGCAGAAAACTTGCCCTT-GATCACTAACGGACACCTT-T-CTACACT
* * * * * * *
37146481 TTGTTGACCAATATATTGTCTCCAAATGAACTAGTGACT-CTCACACCCTTATCTATGATTTCTA
252 TTATTGACCAATATACTGTCCCCAAACGAACTAGTGA-TAGTCACGCCCTTATCTATGGTTTCTA
* * * * *
37146545 C-ATGAATTCCCAACTCAC-AGGCAAGTTCACTCAAAGCATACAAGTGCATGGAACTAGATTCAA
316 CTA-GAATTCCCAACTGACTA-GCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTCAA
** * * * * * *
37146608 TGAAGGAAAA-AATGGAATAGTTCGTAGAGTTAAAGTAGTTGGGATAACATTGGTCGAGCCCTGA
379 TGAAGGAAAACAAT-GAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCGGTCAAGCCCTGA
* * * *
37146672 TCTTGTGGTTACCTTACAACATAGA-T-TTGTACAAGGCCTCCTAACTCATCTTGGGTAGCAACA
443 TCTTGTGGTTCCCTTACAACATAGACTCATGT--GAGGCCTCCT-ACTCATCTTGAGTAGCAACA
*** * * * ** * * *
37146735 ACT-TGAGATAAAGTTTGCTACCCAACTTGCATTGCATCCTAGCC-TTTTCCTCGACCTCATCCA
505 A-TGTGAGATAAAGTACACTGCCCAACTAGCATTGTATAGT-GCCATCTT-CTCAACCTCGTCCA
* * ** * * * * * *
37146798 TGAGCCCCAACTCGTACTCGGAGGGGGTCACATT-TG-GCATCTGTGAGTTTTCC-TGTCTATTT
567 CGAGCACCAACTCACAC-CCGAGGGGATCACATTCTGTGCA--TGTCA-TTTCCCTTATCTATAT
* * * * * * ** * ** ***
37146860 GGGCAATCTT-TTCTC-ATTTGGAAAAATATTATGAAAGTCCTTGACA-ATACGTATCTCGTGGA
628 GGGAAATCTTCTT-TCGA-CTAGAAACACATTAGGAGTGTCCTTCACAGA-AAATATCTCGCAAA
* * * * *
37146922 CCCTTATAACCTTGTCCATTA--AACCCATAAAAAATGCGAGATAGACTTTC-C
690 CCCCTATAGCCTTGTCC--TACGAACCCATCAGAAATGC-AGATAGGC-TTCGC
** * * * * * *** *
37146973 AGCTATTACCCAACATCTTTACTGCTTTCAATGTTAAGACCACAATAGAAATAAATTGAGCTCGC
1 AGCCCTTACCCAACATCTTTTCTACTTTCATTG-TCATATGGCAATAGACATAAATTGAGCTCGC
* * ** * * * * * * * * * *
37147038 ACACCTACCACTACAATTTCCTTATCTTTATTTTTTTTTGCAAAATGACTCTATTTCAATTCCAA
65 TCACCTACCACTACAATTTCCCTGCCTTCA--CTGTTTCGTAAAGTGACT-TTTTTTAGTTCGAA
* **
37147103 GTCAATCTTGGCTTTATGCTCAGCCAACCAATCCATTCC-----TA-AT--ATTACATAGAATGG
127 GTCAATCTTGGCTTTATGCTCAGCCAACCAATCCATCCCAAGATTACATCAAACACATAGAATGG
* * * * * * * *
37147160 CAACTCCCA-AAACTTCACATAGAAAACTTGCCCTTGGATCACTAAAGAACA-CTTATGGTA-AC
192 AAACT-CTATCAAGTTCGC--AGAAAACTTGCCCTT-GATCACTAACGGACACCTT-T-CTACAC
* * * *
37147222 TTTATTGACTAATATATTGTCTCCAAACAAACTAGTGATAGTCACGCCCTTAT-TAATGGTTTCT
251 TTTATTGACCAATATACTGTCCCCAAACGAACTAGTGATAGTCACGCCCTTATCT-ATGGTTTCT
* * * * *
37147286 ACTGGAATTCCCAATTCAC-ATGCTAGTTCACTCAAAACATACAAGTGTGTGGAACTAGATTCAA
315 ACTAGAATTCCCAACTGACTA-GCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTCAA
* * * * * * ** * *
37147350 CGAAGGAAAAGAATGGAATAGTTCATAGAGTGAAGGTAGTTGTAATAACATCAGTTGAGCCATGG
379 TGAAGGAAAACAAT-GAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCGGTCAAGCCCTGA
* ** * *
37147415 TCTTGTGGTTCCCTTACAACATAGACTCGTGCAAGGCCTCCTAACTCATCTTGGGTAGCAACAGT
443 TCTTGTGGTTCCCTTACAACATAGACTCATGTGAGGCCTCCT-ACTCATCTTGAGTAGCAACAAT
* * * * * * * * * * * * *
37147480 TTGAGATAAATTTCGCTCCCCAACTTA-CCTTGTATCATTG-CGTCTTCCTCGACCCCATTCATG
507 GTGAGATAAAGTACACTGCCCAAC-TAGCATTGTAT-AGTGCCATCTT-CTCAACCTCGTCCACG
* ** * * * *
37147543 AGC-CCTAGCTCGTACTCGGAGGGGTTCACATT-TG-GCACATG-CGATTTCTCC-TATTTATTT
569 AGCACC-AACTCACAC-CCGAGGGGATCACATTCTGTG--CATGTC-ATTTC-CCTTATCTATAT
* * * * ** * * * * ** *
37147603 GGGAAATCTT-TTCTCGTCTGGAAAAACATTAGAAAAGTCCCTGATAGTACGTATCTC-AAGAAC
628 GGGAAATCTTCTT-TCGACTAGAAACACATTAGGAGTGTCCTTCACAGAAAATATCTCGCA-AAC
*
37147666 CCCTATAGCCTTGTCC-ATCGAACCCATCAGAAATACAAGATAGGCTTCGC
691 CCCTATAGCCTTGTCCTA-CGAACCCATCAGAAATGC-AGATAGGCTTCGC
* ** * * * ***
37147716 AACTGTTACCCAACATCTTTACTACTTTCAATGTCGAGACCACAATAGACATAAATTGAGCTCGC
1 AGCCCTTACCCAACATCTTTTCTACTTTCATTGTC-ATATGGCAATAGACATAAATTGAGCTCGC
* * * *
37147781 TCACCTACCACTACAATTTCCTTGCCTTCGCTGTTTCGTAAAATGACTCTTTTTCT-GTTCCAAG
65 TCACCTACCACTACAATTTCCCTGCCTTCACTGTTTCGTAAAGTGACT-TTTTT-TAGTTCGAAG
*
37147845 TCAATCTTGGCTTTATGCTCAGCCAACCAATCCATCCCCAAGATTACATCAAACACATAGAATGA
128 TCAATCTTGGCTTTATGCTCAGCCAACCAATCCAT-CCCAAGATTACATCAAACACATAGAATGG
* * *
37147910 AAAGT-TCATCATGTTCAAGTCA-AAAACTTGCCCTTGGATCATTAACGGACA-C---CTACACT
192 AAACTCT-ATCAAGTTC--G-CAGAAAACTTGCCCTT-GATCACTAACGGACACCTTTCTACACT
*
37147969 TTATTGACCAATATAGTGTCCCCAAACGAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTAC
252 TTATTGACCAATATACTGTCCCCAAACGAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTAC
* * * * * *
37148034 TAGAATTCCCAACTCAC-ACGTTAGTTCACTCAAAACATACGAGTGTGTGTAAAC-ATATTCAAT
317 TAGAATTCCCAACTGACTA-GCTAGTTCACTCAAAACATACTAGTGCGTG-GAACTAGATTCAAT
* * * * * *
37148097 CAAGGAAAAAGAATGAATAGTTCACAA-AGTGAATGTACTTGTGATAAAATCGGTCAAACCTTGA
380 GAAGG-AAAACAATGAATAGTTCA-AAGAGTGAAGGTACTTGTGATAACATCGGTCAAGCCCTGA
* * * * * *
37148161 TTTTGTGGTTCCCGTACAATATAGACTCATGCGAGGCCTCCTAATACATCTTGAGTAGTAACAAT
443 TCTTGTGGTTCCCTTACAACATAGACTCATGTGAGGCCTCCTACT-CATCTTGAGTAGCAACAAT
* ** * * * *
37148226 GTAAGATTTAGTACATTGCCCAACTTGCCTTGTATTATTG-CATCTTCAT-AACCTCGTCCACGA
507 GTGAGATAAAGTACACTGCCCAACTAGCATTGTA-TAGTGCCATCTTC-TCAACCTCGTCCACGA
** * * * * *
37148289 GCACCAACTCACACTTGGGTGGGGTCATATTCTGCACTTGGGATTTTTCTTATCTCTCTAGGCAA
570 GCACCAACTCACACCCGAG-GGGATCACATTCTG----T-GCA--TGTC--AT-T-TC----C--
* *
37148354 TCATTTATC-ATATGGGAAATCTTCTTTCGTCTAGAAGCACATTAGGAAAGT-TCC-TCACA-AA
617 -C--TTATCTATATGGGAAATCTTCTTTCGACTAGAAACACATTAGG--AGTGTCCTTCACAGAA
* * * *
37148415 AATAGATCTCGCAAACCCCTATAGCCTTGTCCTACAAACCCATAAAAAATGCGAGATAGGCTTTG
677 AAT--ATCTCGCAAACCCCTATAGCCTTGTCCTACGAACCCATCAGAAATGC-AGATAGGCTTCG
*
37148480 T
739 C
* * *
37148481 AGCCCTTACCCAACATCTTTTCTACTATCATTGTCATTATGGCATTAGACATAAATTGAGGTCGC
1 AGCCCTTACCCAACATCTTTTCTACTTTCATTGTCA-TATGGCAATAGACATAAATTGAGCTCGC
* * * * * *
37148546 TCACCTACAACTATAATTTCCCAGCCTTCAATGTTTCGTAAAGTGACTTTTTTTAGTTTGAAATC
65 TCACCTACCACTACAATTTCCCTGCCTTCACTGTTTCGTAAAGTGACTTTTTTTAGTTCGAAGTC
* * ** *
37148611 AATTTTGGCTATATGCTCAGCCAACCAATCTGTCCCAAAGATTACATCAAACACATAAAATGGAA
130 AATCTTGGCTTTATGCTCAGCCAACCAATCCATCCC-AAGATTACATCAAACACATAGAATGGAA
* * *
37148676 ACTCTATCAAGTTCGCAGATAACTTGCCCTTGTATCACTAACGGAAACCTTTGCTATACTTTATT
194 ACTCTATCAAGTTCGCAGAAAACTTGCCCTTG-ATCACTAACGGACACCTTT-CTACACTTTATT
* * *
37148741 GACCAATA-ACTGTCCCCAAACAAACTAGTGACT-GTCACACCCTTATCTATAGTTTCTACTAGA
257 GACCAATATACTGTCCCCAAACGAACTAGTGA-TAGTCACGCCCTTATCTATGGTTTCTACTAGA
*
37148804 ATTCCAAACTGACTAGCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTCAATGAAGGA
321 ATTCCCAACTGACTAGCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTCAATGAAGGA
** * * * *
37148869 AAACAATAGAATAGTTCGTAGAGTGAAGGTAGTTGTGATCACATTGGTCAAGCCCTGGTCTTGTG
386 AAACAAT-GAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCGGTCAAGCCCTGATCTTGTG
* * * * * *
37148934 GTTCCCTTACAACAAAGACTCGTGTGAGGTCTCCCGACTCATCTT-AGCTAGCAACTATTTGAGA
450 GTTCCCTTACAACATAGACTCATGTGAGGCCT-CCTACTCATCTTGAG-TAGCAACAATGTGAGA
* * * * * * * *
37148998 TAAAGTTCACTGCCCAACTAGCATTGTATCGTGCCTTCTTCTCGACCTTGTCCATGAGTACCAGC
513 TAAAGTACACTGCCCAACTAGCATTGTATAGTGCCATCTTCTCAACCTCGTCCACGAGCACCAAC
* * * *
37149063 TCACACCCGAGGGGATCACATTTTGTGCATGTCATTTCCCTTATCTATCTGGGCAATCTTTTTTC
578 TCACACCCGAGGGGATCACATTCTGTGCATGTCATTTCCCTTATCTATATGGGAAATCTTCTTTC
* * * * ** *
37149128 GACTTGAAACACATTAGGAGTGTCCTTGACAGTACATATCTCGTGAACCCCTATAACCTTGTCCT
643 GACTAGAAACACATTAGGAGTGTCCTTCACAGAAAATATCTCGCAAACCCCTATAGCCTTGTCCT
* *
37149193 CCGAACCCATCAGAAATGCAGGATAGGCTTCAC
708 ACGAACCCATCAGAAATGCA-GATAGGCTTCGC
* ** *
37149226 AGCCCTTACCCAACGTCTTTTC-ACTTTTGTTGTCAATATGGCAATAGACATAAATTGAGCTTGC
1 AGCCCTTACCCAACATCTTTTCTACTTTCATTGTC-ATATGGCAATAGACATAAATTGAGCTCGC
* * * ** *
37149290 TCACCTACCACTACAACTTCACTGCCTTCACTATTTCACAAAGTGACTCTTTTTAGTTCGAAGTC
65 TCACCTACCACTACAATTTCCCTGCCTTCACTGTTTCGTAAAGTGACTTTTTTTAGTTCGAAGTC
37149355 AATCTTGGCTTTATGCTCAGCCAACCAATCCATCCCAA-ATTACATCAAACACATAGAAT-GACA
130 AATCTTGGCTTTATGCTCAGCCAACCAATCCATCCCAAGATTACATCAAACACATAGAATGGA-A
* * * *
37149418 ACTCCATCAAGTTCACGTAGAAAACTTTCCCTTAGATCACTAAAGGACACCTATTCTACACTTTA
194 ACTCTATCAAGTT--CGCAGAAAACTTGCCCTT-GATCACTAACGGACACCT-TTCTACACTTTA
* * * *
37149483 TTGACCAATATATTGTCCACAAATGAACTAGTGATAGTCATGCCCTTATCTATGGTTTCTACTAG
255 TTGACCAATATACTGTCCCCAAACGAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTACTAG
* * ** *
37149548 AATCCCCAACTGA-TCGGCTAGTTCGTTGAAAACATACTAGTGCGTGGAACTAGATTCAATGAAG
320 AATTCCCAACTGACT-AGCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTCAATGAAG
* *
37149612 GAAAACAATGGAATAGTTCAAAGAGTGAAGTTATTTGTGATAACATCGGTCAAGCCCTGATCTTG
384 GAAAACAAT-GAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCGGTCAAGCCCTGATCTTG
* * * *
37149677 TGGTTGCTTTACAACATAGACTCTTGTGAAGCCTCCTGACTCATCTTCG-GTAGCAACAATGTGA
448 TGGTTCCCTTACAACATAGACTCATGTGAGGCCTCCT-ACTCATCTT-GAGTAGCAACAATGTGA
37149741 GATAAAGT
511 GATAAAGT
37149749 TCGCTGCCTC
Statistics
Matches: 2258, Mismatches: 395, Indels: 250
0.78 0.14 0.09
Matches are distributed among these distances:
740 1 0.00
741 66 0.03
742 169 0.07
743 410 0.18
744 181 0.08
745 335 0.15
746 281 0.12
747 20 0.01
748 2 0.00
749 69 0.03
750 50 0.02
751 16 0.01
752 47 0.02
753 2 0.00
754 4 0.00
755 2 0.00
756 4 0.00
758 3 0.00
759 1 0.00
760 2 0.00
761 4 0.00
762 26 0.01
763 7 0.00
764 110 0.05
765 178 0.08
766 243 0.11
767 25 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (739 bp):
AGCCCTTACCCAACATCTTTTCTACTTTCATTGTCATATGGCAATAGACATAAATTGAGCTCGCT
CACCTACCACTACAATTTCCCTGCCTTCACTGTTTCGTAAAGTGACTTTTTTTAGTTCGAAGTCA
ATCTTGGCTTTATGCTCAGCCAACCAATCCATCCCAAGATTACATCAAACACATAGAATGGAAAC
TCTATCAAGTTCGCAGAAAACTTGCCCTTGATCACTAACGGACACCTTTCTACACTTTATTGACC
AATATACTGTCCCCAAACGAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTACTAGAATTCC
CAACTGACTAGCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTCAATGAAGGAAAACA
ATGAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCGGTCAAGCCCTGATCTTGTGGTTCCC
TTACAACATAGACTCATGTGAGGCCTCCTACTCATCTTGAGTAGCAACAATGTGAGATAAAGTAC
ACTGCCCAACTAGCATTGTATAGTGCCATCTTCTCAACCTCGTCCACGAGCACCAACTCACACCC
GAGGGGATCACATTCTGTGCATGTCATTTCCCTTATCTATATGGGAAATCTTCTTTCGACTAGAA
ACACATTAGGAGTGTCCTTCACAGAAAATATCTCGCAAACCCCTATAGCCTTGTCCTACGAACCC
ATCAGAAATGCAGATAGGCTTCGC
Found at i:37149868 original size:745 final size:741
Alignment explanation
Indices: 37148276--37149868 Score: 1676
Period size: 745 Copynumber: 2.1 Consensus size: 741
37148266 CATCTTCATA
* * * * * *
37148276 ACCTCGTCCACGAGCACCAACTCACACTTGGGT-GGGGTCATATTCTGCACTTGGGATTTTTCTT
1 ACCTCGTCCATGAGTACCAACTCACACTTGGGTAGGGGTCACATTCTACACTTGGGATTTCTCAT
* * * * * *
37148340 ATCTCTCTAGGCAATCATTTATCATATGGGAAATCTTCTTTCGTCTAGAAGCACATTAGGAAAGT
66 -TCTATCTAGACATTCATTTATCATATGGGAAATCTTTTTTCGACTAGAAACACATTAGG-AAGT
*
37148405 TCCTCACAAAAATAGATCTCGCAAACCCCTATAGCCTTGTCCTACAAACCCATAAAAAATGCGAG
129 TCCTCACAAAAATA-ATCTCGCAAACCCCTATAACCTTGTCCTACAAACCCATAAAAAATGCGAG
*** * *
37148470 ATAGGCTTTGTAGCCCTTACCCAACATCTTTTCTACTATCATTGTCATTATGGCATTAGACATAA
193 ATAGGCTTCACAGCCCTTACCCAACATCTTTTCTACTATCATTGTCAATATGGCAATAGACATAA
* * * * * ** *
37148535 ATTGAGGTCGCTCACCTACAACTATAATTTCCCAGCCTTCAATGTTTCGTAAAGTGACTTTTTTT
258 ATTGAGCTCGCTCACCTACAACTACAACTTCACAGCCTTCAATATTTCACAAAGTGACTCTTTTT
* * **
37148600 AGTTTGAAATCAATTTTGGCTATATGCTCAGCCAACCAATCTGTCCCAAAGATTACATCAAACAC
323 AGTTCGAAATCAATCTTGGCTATATGCTCAGCCAACCAATCCATCCCAAAGATTACATCAAACAC
* * *
37148665 ATAAAATGGAAACTCTATCAAGTTCGCAGATAACTTGCCCTTGTATCACTAACGGAAACCTTTGC
388 ATAAAATGGAAACTCCATCAAGTTCGCAGAAAACTTGCCCTTGTATCACTAAAGGAAACCTTTGC
* *
37148730 TATACTTTATTGACCAATAACTGTCCCCAAACAAACTAGTGACTGTCACACCCTTATCTATAGTT
453 TACACTTTATTGACCAATAACTGTCCACAAACAAACTAGTGACTGTCACACCCTTATCTATAGTT
*
37148795 TCTACTAGAATTCCAAACTGACTAGCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTC
518 TCTACTAGAATCCCAAACTGACTAGCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTC
** * *
37148860 AATGAAGGAAAACAATAGAATAGTTCGTAGAGTGAAGGTAGTTGTGATCACATTGGTCAAGCCCT
583 AATGAAGGAAAACAATAGAATAGTTCAAAGAGTGAAGGTAGTTGTGATAACATCGGTCAAGCCCT
* * * *
37148925 GGTCTTGTGGTTCCCTTACAACAAAGACTCGTGTGAGGTCTCCCGACTCATCTTAGCTAGCAACT
648 GATCTTGTGGTTCCCTTACAACAAAGACTCGTGTGAAGCCTCCCGACTCATCTTAGCTAGCAACA
*
37148990 ATTTGAGATAAAGTTCACTGCCCAACTAG
713 ATGTGAGATAAAGTTCACTGCCCAACTAG
* * * * ** * *** * * * ** ***
37149019 -CATTGT--AT-CGTGCCTTCTTCTCGACCTTGTCCATGAGT-ACCA-GCTCACACCCGAGGGGA
1 ACCTCGTCCATGAGTACCAAC-TCAC-A-CTTGGGTAGGGGTCA-CATTCT-ACACTTG-GGATT
* * * * ** * * *
37149078 TCACATTTTGTGC-ATGTCATTTCCCTTATCTATCTGGGCAATCTTTTTTCGACTTGAAACACAT
60 TCTCATTCTAT-CTA-GACA-TTCATTTATC-ATATGGGAAATCTTTTTTCGACTAGAAACACAT
* * * ** * * *
37149142 TAGG-AGTGTCCTTGACAGTACAT-ATCTCGTGAACCCCTATAACCTTGTCCTCCGAACCCATCA
121 TAGGAAGT-TCC-TCACA-AAAATAATCTCGCAAACCCCTATAACCTTGTCCTACAAACCCATAA
* * * **
37149205 GAAATGC-AGGATAGGCTTCACAGCCCTTACCCAACGTCTTTTC-ACTTTTGTTGTCAATATGGC
183 AAAATGCGA-GATAGGCTTCACAGCCCTTACCCAACATCTTTTCTACTATCATTGTCAATATGGC
* * * *
37149268 AATAGACATAAATTGAGCTTGCTCACCTACCACTACAACTTCACTGCCTTCACTATTTCACAAAG
247 AATAGACATAAATTGAGCTCGCTCACCTACAACTACAACTTCACAGCCTTCAATATTTCACAAAG
* *
37149333 TGACTCTTTTTAGTTCGAAGTCAATCTTGGCTTTATGCTCAGCCAACCAATCCATCCC-AA-ATT
312 TGACTCTTTTTAGTTCGAAATCAATCTTGGCTATATGCTCAGCCAACCAATCCATCCCAAAGATT
* * *
37149396 ACATCAAACACATAGAAT-GACAACTCCATCAAGTTCACGTAGAAAACTTTCCCTTAG-ATCACT
377 ACATCAAACACATAAAATGGA-AACTCCATCAAGTT--CGCAGAAAACTTGCCCTT-GTATCACT
* * **
37149459 AAAGGACACCTATT-CTACACTTTATTGACCAATATATTGTCCACAAATGAACTAGTGA-TAGTC
438 AAAGGAAACCT-TTGCTACACTTTATTGACCAATA-ACTGTCCACAAACAAACTAGTGACT-GTC
** * * * ** *
37149522 ATGCCCTTATCTATGGTTTCTACTAGAATCCCCAACTGA-TCGGCTAGTTCGTTGAAAACATACT
500 ACACCCTTATCTATAGTTTCTACTAGAATCCCAAACTGACT-AGCTAGTTCACTCAAAACATACT
* * *
37149586 AGTGCGTGGAACTAGATTCAATGAAGGAAAACAATGGAATAGTTCAAAGAGTGAAGTTATTTGTG
564 AGTGCGTGGAACTAGATTCAATGAAGGAAAACAATAGAATAGTTCAAAGAGTGAAGGTAGTTGTG
* * * * *
37149651 ATAACATCGGTCAAGCCCTGATCTTGTGGTTGCTTTACAACATAGACTCTTGTGAAGCCTCCTGA
629 ATAACATCGGTCAAGCCCTGATCTTGTGGTTCCCTTACAACAAAGACTCGTGTGAAGCCTCCCGA
* * * ** *
37149716 CTCATCTTCGGTAGCAACAATGTGAGATAAAGTTCGCTGCCTCTTTCTCG
694 CTCATCTTAGCTAGCAACAATGTGAGATAAAGTTCACTGCC-C-AACTAG
* * * *
37149766 ACCTCGTCCATGAGTACCAGCTCGCACTTGGGTAGGGGTCACATTCTACACTTGTGATTTCTCCT
1 ACCTCGTCCATGAGTACCAACTCACACTTGGGTAGGGGTCACATTCTACACTTGGGATTTCTCAT
*
37149831 GTCTATCTAGACATTCTTTTATCATATGGGAAATCTTT
66 -TCTATCTAGACATTCATTTATCATATGGGAAATCTTT
37149869 CTGGGCAATC
Statistics
Matches: 671, Mismatches: 146, Indels: 64
0.76 0.17 0.07
Matches are distributed among these distances:
739 4 0.01
740 4 0.01
741 3 0.00
742 44 0.07
743 14 0.02
744 184 0.27
745 322 0.48
746 44 0.07
747 15 0.02
748 23 0.03
749 4 0.01
750 5 0.01
751 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (741 bp):
ACCTCGTCCATGAGTACCAACTCACACTTGGGTAGGGGTCACATTCTACACTTGGGATTTCTCAT
TCTATCTAGACATTCATTTATCATATGGGAAATCTTTTTTCGACTAGAAACACATTAGGAAGTTC
CTCACAAAAATAATCTCGCAAACCCCTATAACCTTGTCCTACAAACCCATAAAAAATGCGAGATA
GGCTTCACAGCCCTTACCCAACATCTTTTCTACTATCATTGTCAATATGGCAATAGACATAAATT
GAGCTCGCTCACCTACAACTACAACTTCACAGCCTTCAATATTTCACAAAGTGACTCTTTTTAGT
TCGAAATCAATCTTGGCTATATGCTCAGCCAACCAATCCATCCCAAAGATTACATCAAACACATA
AAATGGAAACTCCATCAAGTTCGCAGAAAACTTGCCCTTGTATCACTAAAGGAAACCTTTGCTAC
ACTTTATTGACCAATAACTGTCCACAAACAAACTAGTGACTGTCACACCCTTATCTATAGTTTCT
ACTAGAATCCCAAACTGACTAGCTAGTTCACTCAAAACATACTAGTGCGTGGAACTAGATTCAAT
GAAGGAAAACAATAGAATAGTTCAAAGAGTGAAGGTAGTTGTGATAACATCGGTCAAGCCCTGAT
CTTGTGGTTCCCTTACAACAAAGACTCGTGTGAAGCCTCCCGACTCATCTTAGCTAGCAACAATG
TGAGATAAAGTTCACTGCCCAACTAG
Found at i:37155465 original size:46 final size:46
Alignment explanation
Indices: 37155408--37155572 Score: 149
Period size: 46 Copynumber: 3.6 Consensus size: 46
37155398 TACATCTCAC
*
37155408 GAACTCAGACTCAACTCCACGAGTTCAGACGTTCACATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGT
* * * * * * *
37155454 GAACTCGGACTCCACTCAAAGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCAGACTCAACTCAACGAGTTC--A-GAC--GTTCACATCCATAAGT
* * *
37155501 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGT
*
37155547 GAACTCAGACTCAACTCAACAAGTTC
1 GAACTCAGACTCAACTCAACGAGTTC
37155573 GGATGCCCAA
Statistics
Matches: 92, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 2 0.02
46 45 0.49
47 23 0.25
48 3 0.03
49 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
GAACTCAGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGT
Found at i:37155506 original size:47 final size:47
Alignment explanation
Indices: 37155361--37155529 Score: 177
Period size: 47 Copynumber: 3.6 Consensus size: 47
37155351 GCCCATAAGT
*
37155361 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * * *
37155408 GAACTCAGACTCAACTCCACGAGTTC--A-GAC--GTTCACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
* *
37155454 GAACTCGGACTCCACTCAAAGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
*
37155501 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
37155530 CGTTCGCATC
Statistics
Matches: 95, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 3 0.03
45 3 0.03
46 21 0.22
47 48 0.51
48 3 0.03
49 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:37155512 original size:93 final size:93
Alignment explanation
Indices: 37155353--37155579 Score: 366
Period size: 93 Copynumber: 2.4 Consensus size: 93
37155343 TGTTACCCGC
*
37155353 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
1 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
*
37155418 TCAACTCCACGAGTTCAGACGTTCACAT
66 TCAACTCAACGAGTTCAGACGTTCACAT
* *
37155446 CCATAAGTGAACTCGGACTCCACTCAAAGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
* *
37155511 TCAACTCAACGAGTTCGGACGTTCGCAT
66 TCAACTCAACGAGTTCAGACGTTCACAT
* *
37155539 CCATAAGTGAACTCAGACTCAACTCAACA-AGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAA-AGAGCTCGGATGCC
37155580 CAAATATCCG
Statistics
Matches: 124, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
93 123 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
TCAACTCAACGAGTTCAGACGTTCACAT
Found at i:37158039 original size:15 final size:15
Alignment explanation
Indices: 37158011--37158073 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
37158001 AGAAAACCGA
*
37158011 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
* *
37158026 ATAGAGAAACCCAAA
1 ATAAAGAAACCCAAG
* *
37158041 AAAAAGAAATCC-AG
1 ATAAAGAAACCCAAG
37158055 AATAAAGAAACCCAAG
1 -ATAAAGAAACCCAAG
37158071 ATA
1 ATA
37158074 TGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 1 0.03
15 34 0.92
16 2 0.05
ACGTcount: A:0.62, C:0.16, G:0.13, T:0.10
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:37158048 original size:30 final size:30
Alignment explanation
Indices: 37158013--37158069 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37158003 AAAACCGAAT
*
37158013 AAAGAAATCCA-AGATAGAGAAACCCAAAAA
1 AAAGAAATCCAGA-ATAAAGAAACCCAAAAA
37158043 AAAGAAATCCAGAATAAAGAAACCCAA
1 AAAGAAATCCAGAATAAAGAAACCCAA
37158070 GATATGATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.63, C:0.18, G:0.12, T:0.07
Consensus pattern (30 bp):
AAAGAAATCCAGAATAAAGAAACCCAAAAA
Found at i:37161116 original size:47 final size:47
Alignment explanation
Indices: 37161047--37161220 Score: 187
Period size: 47 Copynumber: 3.7 Consensus size: 47
37161037 CGCCCATAAG
*
37161047 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
37161094 CGAACTCAGACTCAACTCAACGAGTTC--A-GAC--GTTCGCATCCATAA
1 CGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA
* * *
37161139 GTGAACTCGGACTCCACTCAACGAGCTCGGATGCCTAGTTACATCTCA
1 -CGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
* *
37161187 CGAACTCAGACTCAACTCAACGAGTTTGGATGCC
1 CGAACTCAGACTCAACTCAACGAGCTCGGATGCC
37161221 CAAATATCCG
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 23 0.23
47 54 0.53
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (47 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:37161199 original size:93 final size:93
Alignment explanation
Indices: 37161040--37161212 Score: 328
Period size: 93 Copynumber: 1.9 Consensus size: 93
37161030 TGTAACCCGC
37161040 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
37161105 TCAACTCAACGAGTTCAGACGTTCGCAT
66 TCAACTCAACGAGTTCAGACGTTCGCAT
* *
37161133 CCATAAGTGAACTCGGACTCCACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
37161198 TCAACTCAACGAGTT
66 TCAACTCAACGAGTT
37161213 TGGATGCCCA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (93 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGAC
TCAACTCAACGAGTTCAGACGTTCGCAT
Found at i:37163157 original size:15 final size:15
Alignment explanation
Indices: 37163129--37163163 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
37163119 TCCATTTTCT
37163129 TTATTCTTTCTTTTA
1 TTATTCTTTCTTTTA
37163144 TTATT-TTTCATTTTA
1 TTATTCTTTC-TTTTA
37163159 TTATT
1 TTATT
37163164 ATAACATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (15 bp):
TTATTCTTTCTTTTA
Found at i:37171168 original size:3 final size:3
Alignment explanation
Indices: 37171160--37171341 Score: 51
Period size: 3 Copynumber: 59.3 Consensus size: 3
37171150 CCCTATATGT
*
37171160 TTA TTA TTA TTA TTA TTA TTA -TA TATA TATA TTTA TATA TTG TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA -TTA T-TA TTA TT-A
* * * **
37171206 TTG TT- TTA TTG TTA -TA CCTTA TTT TTA -TA TTA TATA TTA -TA AAA
1 TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* *
37171250 TTA TT- TTA TATA TTA TT- TATA TTA TTA TTTA TTA TGTT TTA TTT TTCA
1 TTA TTA TTA T-TA TTA TTA T-TA TTA TTA -TTA TTA T-TA TTA TTA TT-A
** * * *
37171298 CAAA TTA TTA TTA TT- TTA -CA TTA TCA TTT TTA -TA TTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37171341 T
1 T
37171342 ATTTTTACTT
Statistics
Matches: 132, Mismatches: 24, Indels: 46
0.65 0.12 0.23
Matches are distributed among these distances:
2 18 0.14
3 85 0.64
4 26 0.20
5 3 0.02
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:37184043 original size:204 final size:205
Alignment explanation
Indices: 37183722--37184224 Score: 760
Period size: 205 Copynumber: 2.5 Consensus size: 205
37183712 CGGAGAGTAG
*
37183722 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
*
37183787 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGGG-GCAGACACATA
66 TCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGCAGACACATA
* * * * *
37183851 GCAGATC-CAAACTTCAGAT-GTCTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCT
131 GCAGATCTC-AACTTCAGATGGT-TATACTGAAGCAGATCCAACACGATTTAGCATCCTTGTGCT
37183914 TACAAGGAGCAA
194 TACAAGGAGCAA
* * *
37183926 ATCGAAGACATAACTGATTTGGCTTTCACGTGCTTACGTCGAAGCAAATTTAAGATGATTTGGCA
1 ATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * *
37183991 TCTTTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGTAGATACATA
66 TCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGCAGACACATA
*
37184056 GCAGATCTCACCTTCAGATGGTTATACTGAAGCAGATCCAACACGATTTAGCATCCTTGTGCTTA
131 GCAGATCTCAACTTCAGATGGTTATACTGAAGCAGATCCAACACGATTTAGCATCCTTGTGCTTA
37184121 CAAGGAGCAA
196 CAAGGAGCAA
* * * * *
37184131 ATCAAAGACACAACTGATTTGGCTTTCATGTGTTTATGTTAAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * * *
37184196 TCTCTATATTGGCGGAGAGCAGATCGAAG
66 TCTCTGTATTGTCAGAGAGCAAATCGAAG
37184225 ATACCAGATT
Statistics
Matches: 269, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
204 112 0.42
205 154 0.57
206 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGCAGACACATA
GCAGATCTCAACTTCAGATGGTTATACTGAAGCAGATCCAACACGATTTAGCATCCTTGTGCTTA
CAAGGAGCAA
Found at i:37184951 original size:13 final size:13
Alignment explanation
Indices: 37184933--37184959 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37184923 GCCATCAACA
37184933 CCGTGATTCCAGG
1 CCGTGATTCCAGG
37184946 CCGTGATTCCAGG
1 CCGTGATTCCAGG
37184959 C
1 C
37184960 TTCAAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.30, T:0.22
Consensus pattern (13 bp):
CCGTGATTCCAGG
Found at i:37185921 original size:3 final size:3
Alignment explanation
Indices: 37185913--37186106 Score: 109
Period size: 3 Copynumber: 63.3 Consensus size: 3
37185903 CCCTATATGT
37185913 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TATA TGTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA T-TA TTA
* * *
37185961 TTAA TTG TT- TTA TTG TTA -TA CCTTA TTT TTA -TA TTA TATA TTA -TA
1 TT-A TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA T-TA TTA TTA
** *
37186006 AAA TTA TT- TTA TTA TATA TTA TT- TATA TTA TTA TTTA TTA TGTT TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA T-TA TTA TTA -TTA TTA T-TA TTA
* * * * *
37186053 TTT TTCA CTAA TTA TTA TTA TTA TT- TTA -CA TTA TCA TTT TTA -TA
1 TTA TT-A -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37186097 TTA TTA TTA T
1 TTA TTA TTA T
37186107 ATTTTTACTT
Statistics
Matches: 149, Mismatches: 22, Indels: 40
0.71 0.10 0.19
Matches are distributed among these distances:
2 16 0.11
3 105 0.70
4 25 0.17
5 3 0.02
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:37186020 original size:16 final size:16
Alignment explanation
Indices: 37185992--37186036 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
37185982 CTTATTTTTA
37185992 TATTATATATTATAAAAT
1 TATT-TATATTAT-AAAT
*
37186010 TATTT-TATTATATAT
1 TATTTATATTATAAAT
37186025 TATTTATATTAT
1 TATTTATATTAT
37186037 TATTTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 12 0.48
17 1 0.04
18 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTTATATTATAAAT
Found at i:37186266 original size:17 final size:19
Alignment explanation
Indices: 37186245--37186361 Score: 70
Period size: 19 Copynumber: 6.2 Consensus size: 19
37186235 ATTATATAAC
37186245 ATTTATTATATT-TTTATT
1 ATTTATTATATTATTTATT
37186263 -TTTATTCTATATTATTTATT
1 ATTTA-T-TATATTATTTATT
*
37186283 ATTT-TTATAGGTTATATA-T
1 ATTTATTATA--TTATTTATT
* *
37186302 A-TCA-TATATTATCTATT
1 ATTTATTATATTATTTATT
37186319 ATATTATT-TATGT-TTATATT
1 AT-TTATTATAT-TATT-TATT
* *
37186339 ATTCATTATATTATTTATA
1 ATTTATTATATTATTTATT
37186358 ATTT
1 ATTT
37186362 TAAAAGTTGT
Statistics
Matches: 76, Mismatches: 8, Indels: 29
0.67 0.07 0.26
Matches are distributed among these distances:
16 6 0.08
17 6 0.08
18 10 0.13
19 26 0.34
20 25 0.33
21 3 0.04
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (19 bp):
ATTTATTATATTATTTATT
Found at i:37186267 original size:31 final size:30
Alignment explanation
Indices: 37186231--37186288 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
37186221 TTAAAATATA
37186231 TTTTATTATATAACATTTATTATATTTTTAT
1 TTTTATTATATAACATTTATTAT-TTTTTAT
* **
37186262 TTTTATTCTATATTATTTATTATTTTT
1 TTTTATTATATAACATTTATTATTTTT
37186289 ATAGGTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 4 0.17
31 20 0.83
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (30 bp):
TTTTATTATATAACATTTATTATTTTTTAT
Found at i:37187970 original size:41 final size:41
Alignment explanation
Indices: 37187906--37188042 Score: 188
Period size: 41 Copynumber: 3.3 Consensus size: 41
37187896 ACATAAAATT
* *
37187906 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGCACAGAGCC
1 TGCTAGGCAATAAA-CCTGA-TATAATACACCGGCACAAAGCC
37187947 TGCTAGGCAATAAACCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAACCTGATATAATACACCGGCACAAAGCC
* *
37187988 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAACCTGATATAATACACCGGCACAAAGCC
**
37188029 TGCTAACCAATAAA
1 TGCTAGGCAATAAA
37188043 GCCTAAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
41 81 0.93
42 6 0.07
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAACCTGATATAATACACCGGCACAAAGCC
Found at i:37195069 original size:42 final size:42
Alignment explanation
Indices: 37195010--37195093 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
37195000 CGATCCAAAT
37195010 CCGAAATCCACTTTTGCCAATATAATTAATATCAAAATTAAC
1 CCGAAATCCACTTTTGCCAATATAATTAATATCAAAATTAAC
* *
37195052 CCGAATTCCACTTTTGCCAATCTAATTAATATCAAAATTAAC
1 CCGAAATCCACTTTTGCCAATATAATTAATATCAAAATTAAC
37195094 TCAATTATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (42 bp):
CCGAAATCCACTTTTGCCAATATAATTAATATCAAAATTAAC
Found at i:37199141 original size:17 final size:16
Alignment explanation
Indices: 37199121--37199272 Score: 105
Period size: 17 Copynumber: 9.4 Consensus size: 16
37199111 ATAAAAACAA
37199121 TATATATTATTTTTAAT
1 TATATATTATTTTT-AT
*
37199138 TATATGTTATTTTTAT
1 TATATATTATTTTTAT
* *
37199154 TATTTA-TA-TTTCAT
1 TATATATTATTTTTAT
*
37199168 TATATTTTATATTTTAT
1 TATATATTAT-TTTTAT
* *
37199185 TACATATCATATTTTAT
1 TATATATTAT-TTTTAT
37199202 TATATATTATTTCTTA-
1 TATATATTATTT-TTAT
* **
37199218 TATTATCTTCCTTTTAT
1 TA-TATATTATTTTTAT
**
37199235 TATATATTA-TTACAT
1 TATATATTATTTTTAT
* *
37199250 TATTTATTATTTATTAG
1 TATATATTATTT-TTAT
37199267 TATATA
1 TATATA
37199273 AAAATTAAAA
Statistics
Matches: 103, Mismatches: 24, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
14 9 0.09
15 16 0.16
16 20 0.19
17 58 0.56
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.62
Consensus pattern (16 bp):
TATATATTATTTTTAT
Found at i:37199159 original size:7 final size:7
Alignment explanation
Indices: 37199125--37199265 Score: 53
Period size: 7 Copynumber: 19.7 Consensus size: 7
37199115 AAACAATATA
37199125 TATTATT
1 TATTATT
*
37199132 T-TTAAT
1 TATTATT
37199138 TA-TATGT
1 TATTAT-T
37199145 TATT-TT
1 TATTATT
37199151 TATTATT
1 TATTATT
37199158 TA-TATT
1 TATTATT
37199164 TCATTATAT
1 T-ATTAT-T
*
37199173 TTTATATTT
1 TAT-TA-TT
**
37199182 TATTACA
1 TATTATT
37199189 TATCATATTT
1 TAT--TA-TT
*
37199199 TATTATA
1 TATTATT
37199206 TATTATT
1 TATTATT
*
37199213 TCTTA--
1 TATTATT
37199218 TATTATCT
1 TATTAT-T
**
37199226 TCCT-TT
1 TATTATT
*
37199232 TATTATA
1 TATTATT
37199239 TATTATT
1 TATTATT
*
37199246 ACATTATT
1 -TATTATT
37199254 TATTATT
1 TATTATT
37199261 TATTA
1 TATTA
37199266 GTATATAAAA
Statistics
Matches: 97, Mismatches: 20, Indels: 34
0.64 0.13 0.23
Matches are distributed among these distances:
5 4 0.04
6 20 0.21
7 43 0.44
8 17 0.18
9 9 0.09
10 4 0.04
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.64
Consensus pattern (7 bp):
TATTATT
Found at i:37199175 original size:24 final size:24
Alignment explanation
Indices: 37199144--37199221 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
37199134 TAATTATATG
37199144 TTAT-TTTTATTATTTATATTTCA
1 TTATATTTTATTATTTATATTTCA
*
37199167 TTATATTTTA-TATTT-TATTACA
1 TTATATTTTATTATTTATATTTCA
*
37199189 TATCATATTTTATTATATATTATTTC-
1 T-T-ATATTTTATTATTTA-TATTTCA
37199215 TTATATT
1 TTATATT
37199222 ATCTTCCTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
22 7 0.15
23 10 0.22
24 18 0.39
25 5 0.11
26 1 0.02
27 5 0.11
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.65
Consensus pattern (24 bp):
TTATATTTTATTATTTATATTTCA
Found at i:37208152 original size:18 final size:18
Alignment explanation
Indices: 37208129--37208164 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
37208119 TTTATTTCAC
37208129 AATTAACCGAGAAATATG
1 AATTAACCGAGAAATATG
37208147 AATTAACCGAGAAATATG
1 AATTAACCGAGAAATATG
37208165 TCCTATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (18 bp):
AATTAACCGAGAAATATG
Found at i:37211439 original size:44 final size:44
Alignment explanation
Indices: 37211382--37212172 Score: 952
Period size: 44 Copynumber: 18.1 Consensus size: 44
37211372 ACCAATAGTC
* * * * *
37211382 GATTTGGCGTCTCTGTATTGTCAGAAAACAGATCGAAGATAGTA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* *
37211426 GATTTGGCATCTCTATATTGCCAGAGAGCAGATCGAAGATACCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* *
37211470 GATTTGGCATCTCCGTATTGCCAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
** * *
37211514 GATTTGGCATCTCCATATTGCCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* * * **
37211558 GATTTGACATCTCTGTATTGCCAGAGAGTAGATCAAAGATAGTG
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
** * * * *
37211602 GATTTGGCATCTCCATATTACCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
37211646 GATTTGG-AGTCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCA-TCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* *
37211690 GATTTGGCATCTCTGTATTGCTAGAGAGCAGATCGAATATAGCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* * *
37211734 GATTTGGCGTCTCTGTATTGCCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* * *
37211778 GATTTGGCGTCTCTGTATAGCCAAAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* *
37211822 GATTTGGCATC-CTTGTATTGCCAGAGAGCAGATCAAAGATAACA
1 GATTTGGCATCTC-TGTATTGCCAGAGAGCAGATCGAAGATAGCA
* ** * *
37211866 AATTTGGTGTCTCTGTATTGCTAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* * *
37211910 GATTTGGCGTCTCTGTATTACCAGAGAGCAAATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
*
37211954 GATTTGGCATCTCTGTATTGTC--AGAG-AG--C--AGATAGCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* ** * * * *
37211991 GATTTGGCATCCCCATATTGCCGGAGAACAAATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* * *
37212035 GATTTAGCGTCTCTGCATTGCCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* * *
37212079 GATTTGGCATCTTTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
* * * * *
37212123 GGTTTGGCACCTCCGTATTGTCAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
37212167 GATTTG
1 GATTTG
37212173 ATATTCCTGA
Statistics
Matches: 636, Mismatches: 100, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
37 26 0.04
39 4 0.01
40 1 0.00
41 1 0.00
42 5 0.01
43 2 0.00
44 595 0.94
45 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCA
Found at i:37213757 original size:24 final size:23
Alignment explanation
Indices: 37213730--37213803 Score: 62
Period size: 24 Copynumber: 3.1 Consensus size: 23
37213720 ATTATATGTT
37213730 TTTTGTTATTTATATTTCATTATA
1 TTTT-TTATTTATATTTCATTATA
* *
37213754 TTTTATATTT-TATTACATATCATA
1 TTTTTTATTTATATTTCAT-T-ATA
*
37213778 TTTTATTATATATTATTTC-TTATA
1 TTTT-TTATTTA-TATTTCATTATA
37213802 TT
1 TT
37213804 ATCTTCCTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
22 7 0.17
23 6 0.15
24 16 0.40
25 5 0.12
26 1 0.03
27 5 0.12
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.65
Consensus pattern (23 bp):
TTTTTTATTTATATTTCATTATA
Found at i:37213760 original size:17 final size:17
Alignment explanation
Indices: 37213739--37213826 Score: 76
Period size: 17 Copynumber: 5.2 Consensus size: 17
37213729 TTTTTGTTAT
* *
37213739 TTATATTTCATTATATT
1 TTATATTTTATTATATA
*
37213756 TTATATTTTATTACATA
1 TTATATTTTATTATATA
*
37213773 TCATATTTTATTATATA
1 TTATATTTTATTATATA
37213790 TTAT-TTCTTA-TAT-TA
1 TTATATT-TTATTATATA
*
37213805 TCT-TCCTTTTATTATATA
1 T-TAT-ATTTTATTATATA
37213823 TTAT
1 TTAT
37213827 TACATTATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
15 4 0.07
16 9 0.16
17 41 0.71
18 4 0.07
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATATTTTATTATATA
Found at i:37218452 original size:36 final size:36
Alignment explanation
Indices: 37218405--37218476 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
37218395 AGTTTATTTG
*
37218405 GTTTATTCACACTCTGTTTTTTGTAAGGTTTGATCT
1 GTTTATTCACACTCTGGTTTTTGTAAGGTTTGATCT
37218441 GTTTATTCACACTCTGGTTTTTGTAAGGTTTGATCT
1 GTTTATTCACACTCTGGTTTTTGTAAGGTTTGATCT
37218477 CACTAAGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.17, C:0.14, G:0.18, T:0.51
Consensus pattern (36 bp):
GTTTATTCACACTCTGGTTTTTGTAAGGTTTGATCT
Found at i:37220416 original size:46 final size:45
Alignment explanation
Indices: 37220366--37220540 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
37220356 TGGTTGAGCA
37220366 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
37220412 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
37220459 TCCGAGCTCGTTGAGTTGAGTCCG-GTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
37220504 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37220541 GGGTTACATG
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 27 0.25
46 45 0.41
47 27 0.25
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:37220521 original size:92 final size:93
Alignment explanation
Indices: 37220363--37220532 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
37220353 GGATGGTTGA
* *
37220363 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37220428 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
37220456 GCATCCGAGCTCGTTGAGTTGAGTCCG-GTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37220520 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37220533 ACTTATGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 47 0.64
93 26 0.36
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:37223487 original size:15 final size:15
Alignment explanation
Indices: 37223467--37223535 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
37223457 GTATCTTGGG
37223467 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
37223482 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
37223497 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
37223512 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
37223527 TTTCTTTAT
1 TTTCTTTAT
37223536 TCGTTTTCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:37223536 original size:30 final size:30
Alignment explanation
Indices: 37223458--37223537 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
37223448 CATAGTATCG
* * *
37223458 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
37223488 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
37223518 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
37223538 GTTTTCTTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:37225958 original size:46 final size:45
Alignment explanation
Indices: 37225908--37226083 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
37225898 TGGTTGAGCA
*
37225908 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
37225954 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
37226001 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
37226047 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37226084 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:37226064 original size:93 final size:93
Alignment explanation
Indices: 37225905--37226075 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
37225895 GGATGGTTGA
* *
37225905 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37225970 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
37225998 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37226063 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37226076 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:37230198 original size:12 final size:12
Alignment explanation
Indices: 37230181--37230207 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37230171 TATTAATAAA
37230181 TAAATCAAATCT
1 TAAATCAAATCT
37230193 TAAATCAAATCT
1 TAAATCAAATCT
37230205 TAA
1 TAA
37230208 TTTTGAACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAATCAAATCT
Found at i:37232890 original size:19 final size:19
Alignment explanation
Indices: 37232866--37232903 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
37232856 AAAATTCTGA
37232866 AATTTAAAATAAAAGTATT
1 AATTTAAAATAAAAGTATT
* *
37232885 AATTTAATATAAAATTATT
1 AATTTAAAATAAAAGTATT
37232904 GAAAAGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
AATTTAAAATAAAAGTATT
Found at i:37234587 original size:19 final size:19
Alignment explanation
Indices: 37234549--37234588 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37234539 TTTATTATTA
**
37234549 ATATATTTATAATTGTAAT
1 ATATATTTATAATTAAAAT
*
37234568 ATATATTTGTAATTAAAAT
1 ATATATTTATAATTAAAAT
37234587 AT
1 AT
37234589 TAATATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
ATATATTTATAATTAAAAT
Found at i:37234653 original size:15 final size:16
Alignment explanation
Indices: 37234633--37234663 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37234623 TATTTTAAAC
37234633 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
37234648 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
37234664 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:37234728 original size:16 final size:16
Alignment explanation
Indices: 37234684--37234728 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 16
37234674 CACAACATTA
37234684 AATAATTTATTAAA-T
1 AATAATTTATTAAATT
37234699 AATAATTTA-T--ATT
1 AATAATTTATTAAATT
37234712 AATAATTTATTAAATT
1 AATAATTTATTAAATT
37234728 A
1 A
37234729 TTAAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 1 0.04
13 10 0.38
14 2 0.08
15 9 0.35
16 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATAATTTATTAAATT
Found at i:37234737 original size:28 final size:29
Alignment explanation
Indices: 37234684--37234743 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
37234674 CACAACATTA
*
37234684 AATAATTTATTAAATAATAATTTATAT-T
1 AATAATTTATTAAATAATAATATATATAT
*
37234712 AATAATTTATTAAATTATTAA-ATATATAT
1 AATAATTTATTAAA-TAATAATATATATAT
37234741 AAT
1 AAT
37234744 TAAATATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
AATAATTTATTAAATAATAATATATATAT
Found at i:37242133 original size:28 final size:28
Alignment explanation
Indices: 37242076--37242229 Score: 105
Period size: 28 Copynumber: 5.5 Consensus size: 28
37242066 AGTCCCCACG
* *
37242076 GACTTCCACATTTAAGAGT-TTCCT-AGCA
1 GACTTCCACATTTAAGA-TCATCTTGA-CA
*
37242104 GACTTCCACATTTTAGATCATCTTGACA
1 GACTTCCACATTTAAGATCATCTTGACA
* * * * **
37242132 GACTTTCGCATTTAAGATTATCCTGATG
1 GACTTCCACATTTAAGATCATCTTGACA
* * *
37242160 GATTTCCACATTTAAGATCATCTTGGCG
1 GACTTCCACATTTAAGATCATCTTGACA
* * * ** *
37242188 GGCTTCTACATTTTAGATTGTCTTAACA
1 GACTTCCACATTTAAGATCATCTTGACA
*
37242216 AACTTCCACATTTA
1 GACTTCCACATTTA
37242230 CAGTAATGCC
Statistics
Matches: 94, Mismatches: 30, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
27 1 0.01
28 92 0.98
29 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (28 bp):
GACTTCCACATTTAAGATCATCTTGACA
Found at i:37242136 original size:56 final size:56
Alignment explanation
Indices: 37242076--37242229 Score: 143
Period size: 56 Copynumber: 2.8 Consensus size: 56
37242066 AGTCCCCACG
*
37242076 GACTTCCACATTTAAGAGTT-TCCTAGCAGACTTCCACATTTTAGATCATCTTGACA
1 GACTTCCACATTTAAGA-TTATCCTAGCAGACTTCCACATTTAAGATCATCTTGACA
* * * * *
37242132 GACTTTCGCATTTAAGATTATCCT-G-ATGGATTTCCACATTTAAGATCATCTTGGCG
1 GACTTCCACATTTAAGATTATCCTAGCA--GACTTCCACATTTAAGATCATCTTGACA
* * * * * * *
37242188 GGCTTCTACATTTTAGATTGTCTTAACAAACTTCCACATTTA
1 GACTTCCACATTTAAGATTATCCTAGCAGACTTCCACATTTA
37242230 CAGTAATGCC
Statistics
Matches: 77, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
54 1 0.01
55 3 0.04
56 72 0.94
58 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (56 bp):
GACTTCCACATTTAAGATTATCCTAGCAGACTTCCACATTTAAGATCATCTTGACA
Found at i:37244898 original size:40 final size:40
Alignment explanation
Indices: 37244843--37244977 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
37244833 TATGTGCATA
37244843 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
37244883 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
37244923 ACATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
37244963 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
37244978 GTTACATCCG
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:37245001 original size:80 final size:80
Alignment explanation
Indices: 37244844--37245001 Score: 226
Period size: 80 Copynumber: 2.0 Consensus size: 80
37244834 ATGTGCATAG
* *
37244844 CATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGG
1 CATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGA
** *
37244909 GTTAAGTCCCGAAGA
66 GCCAAATCCCGAAGA
* * * *
37244924 CATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTACATCCGA
1 CATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGA
*
37244989 GCCAAATTCCGAA
66 GCCAAATCCCGAA
37245002 AGTATTTATG
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
CATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGA
GCCAAATCCCGAAGA
Found at i:37252703 original size:40 final size:40
Alignment explanation
Indices: 37252653--37252728 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
37252643 AATTAAAAAT
*
37252653 AAAATCTAAAATC-TAATAAAAATAAAAAAATAGTTTTAATA
1 AAAATCTAAAAACATAA-AAAAATAAAAAAAT-GTTTTAATA
* *
37252694 AAAAT-TAAAAACATAAAATAATAAATAAATGTTTT
1 AAAATCTAAAAACATAAAAAAATAAAAAAATGTTTT
37252729 TAAACATCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
39 5 0.16
40 18 0.58
41 8 0.26
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (40 bp):
AAAATCTAAAAACATAAAAAAATAAAAAAATGTTTTAATA
Found at i:37259809 original size:19 final size:22
Alignment explanation
Indices: 37259781--37259821 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
37259771 CTTTGAATCA
37259781 GGGCACACGC-C-CGTGTGGAG
1 GGGCACACGCGCTCGTGTGGAG
37259801 GGGCA-ACGCGCTCGTGTGGAG
1 GGGCACACGCGCTCGTGTGGAG
37259822 ACTTGAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 9 0.47
ACGTcount: A:0.15, C:0.27, G:0.46, T:0.12
Consensus pattern (22 bp):
GGGCACACGCGCTCGTGTGGAG
Found at i:37261218 original size:44 final size:48
Alignment explanation
Indices: 37260957--37261218 Score: 156
Period size: 47 Copynumber: 5.5 Consensus size: 48
37260947 TATAATGCCA
* * * *
37260957 ATGCCATGTCCCAGACATGGTCTTGCACTGGC-TCATCCATCAAGT-T-G
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACCA-CCAT-ACGTGTCG
* * * * * *
37261004 ATGCTATGTCCCAAACATGGTCTTACACTGACTATCGA-AAT-CGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CCACCATACG-TGTCG
* * * * *
37261053 ACGCCATGTCCCATACATGGTCTTACACT-AGCTCTCA-CATATTCATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CACCATA--CGTGTCG
**
37261103 ATGTTATGTCCC-GAACATGGTCTTACACTGACACCACCATACGTGTCG
1 ATGCCATGTCCCAG-ACATGGTCTTACACTGACACCACCATACGTGTCG
* *
37261151 ATGCCATGTCCTAG-CATGGTCTTACACTGACA-CATC-T-CGTAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACCACCATACGT-GTCG
37261196 ATG-CATGTCCCAGACAT-GTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
37261219 TGCTAGCTCT
Statistics
Matches: 168, Mismatches: 30, Indels: 37
0.71 0.13 0.16
Matches are distributed among these distances:
44 18 0.11
45 11 0.07
46 4 0.02
47 47 0.28
48 20 0.12
49 31 0.18
50 35 0.21
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACACCACCATACGTGTCG
Found at i:37268745 original size:48 final size:49
Alignment explanation
Indices: 37268628--37268760 Score: 205
Period size: 48 Copynumber: 2.7 Consensus size: 49
37268618 CCATTAAGTT
* **
37268628 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTCTACATATTCGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACACCTACATA-TCGTGCC
*
37268678 GATGCCATGTCCCAAACATGGTCTTACACTAACACCTCCATA-CGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACACCTACATATCGTGCC
*
37268726 GATGCCATGTCCCAGACATGGTCTTACACTAACAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACAC
37268761 ATCTCGTAGT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
48 40 0.51
50 38 0.49
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAACACCTACATATCGTGCC
Found at i:37278506 original size:43 final size:42
Alignment explanation
Indices: 37278408--37278523 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 42
37278398 AGGGTTACTA
* *
37278408 AGATTACGTGTAAGACCATACCTGGGATATGCCATCAATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGACATCAATATG
* * *
37278450 AGACTT-CGTGTAAGACCATATCTGGGCTGTTGACATCGATATG
1 AGA-TTACGTGTAAGACCATATCTGGGAT-ATGACATCAATATG
*
37278493 AGATTACATGTAAGACCATATCTGGGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATG
37278524 GCATTGGTAC
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 27 0.43
43 36 0.57
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGACATCAATATG
Found at i:37279869 original size:8 final size:8
Alignment explanation
Indices: 37279856--37279884 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
37279846 AAGGGTGGAA
37279856 AAATGGCT
1 AAATGGCT
37279864 AAATGGCT
1 AAATGGCT
37279872 AAATGGCT
1 AAATGGCT
37279880 AAATG
1 AAATG
37279885 TCTAGGCCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (8 bp):
AAATGGCT
Found at i:37283401 original size:38 final size:38
Alignment explanation
Indices: 37283355--37283471 Score: 175
Period size: 38 Copynumber: 3.1 Consensus size: 38
37283345 TAACCCGCAT
* *
37283355 ATTT-TTCCAGCACT-TAGCCTACGGACTTTAAGTCCGA
1 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTCCGG
*
37283392 ATTTATTCCATCATATAGCCTGCGGACTTTAAGTCCGG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCGG
*
37283430 ATTTATTCTAGCATATAGCCTGCGGACTTTAAGTCCGG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCGG
37283468 ATTT
1 ATTT
37283472 CTTCTTTTAC
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
37 5 0.07
38 68 0.93
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (38 bp):
ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCGG
Found at i:37292182 original size:40 final size:40
Alignment explanation
Indices: 37292088--37292232 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
37292078 TACTCGAATG
*
37292088 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
37292129 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
37292169 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
37292209 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
37292233 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:37293966 original size:38 final size:38
Alignment explanation
Indices: 37293910--37294026 Score: 177
Period size: 38 Copynumber: 3.1 Consensus size: 38
37293900 TAACCCGGAT
37293910 ATTT-TTCCAGCACT-TAGCCTGCGGACTTTAAGTTCGG
1 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTTCGG
* *
37293947 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCGA
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTTCGG
37293985 ATTTATTCCAGCATATAGCCTGCGGACTTTAAG-TCTGG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTTC-GG
37294023 ATTT
1 ATTT
37294027 CTTCATTTAC
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
37 6 0.08
38 67 0.92
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (38 bp):
ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTTCGG
Found at i:37306939 original size:37 final size:37
Alignment explanation
Indices: 37306880--37306991 Score: 154
Period size: 37 Copynumber: 3.0 Consensus size: 37
37306870 AGCTCAGATG
** *
37306880 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACA-
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-AT
37306917 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
* * *
37306954 ATATTTCCACACGTAGTCATCGGGTCTTACCCAGAAT
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
37306991 A
1 A
37306992 TATTTCCAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
36 1 0.01
37 67 0.99
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
Found at i:37306992 original size:37 final size:37
Alignment explanation
Indices: 37306898--37306999 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
37306888 ACACAAAGTT
* *
37306898 ATCGGGTCTTACCCGGACA-AAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGA-ATATATTTCCACACGTAGTC
37306935 ATCGGGTCTTACCCGGAATATATTTCCACACGTAGTC
1 ATCGGGTCTTACCCGGAATATATTTCCACACGTAGTC
*
37306972 ATCGGGTCTTACCCAGAATATATTTCCA
1 ATCGGGTCTTACCCGGAATATATTTCCA
37307000 AGTTTCATGT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 1 0.02
37 60 0.98
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGAATATATTTCCACACGTAGTC
Found at i:37307188 original size:48 final size:48
Alignment explanation
Indices: 37307135--37307374 Score: 390
Period size: 48 Copynumber: 5.0 Consensus size: 48
37307125 CCACACCTCC
* * * *
37307135 TACATACTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
37307183 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
37307233 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
37307281 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
37307329 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
37307375 TAATCTTGTG
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
48 136 0.76
50 44 0.24
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:37307288 original size:98 final size:96
Alignment explanation
Indices: 37307135--37307373 Score: 388
Period size: 98 Copynumber: 2.5 Consensus size: 96
37307125 CCACACCTCC
* * * * *
37307135 TACATACTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACACTAG
37307200 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTC--A
* * *
37307233 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCCCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACACTAG
37307298 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
37307329 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
37307374 TTAATCTTGT
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
96 44 0.34
98 87 0.66
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:37313046 original size:29 final size:29
Alignment explanation
Indices: 37312980--37313098 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
37312970 AATTTCACAT
* * * *
37312980 ACATGTATCTGGCCCATTAAG-CCTAATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
* *
37313008 ATATTCATATGGCCCATTAGGCCCAAATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
37313037 AC-TTGTATATGGCCCATTAGGCCCAAATC
1 ACATT-TATATGGCCCATTAGGCCCAAATC
* *
37313066 ACATTTATATGGCCCGTTTGGCCC-AATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
37313094 ACATT
1 ACATT
37313099 CATAATCATG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
28 27 0.35
29 49 0.63
30 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
ACATTTATATGGCCCATTAGGCCCAAATC
Found at i:37319405 original size:56 final size:56
Alignment explanation
Indices: 37319319--37319438 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
37319309 ACAAGGGATG
37319319 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
37319375 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
37319431 ATGGGCAA
1 ATGGGCAA
37319439 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:37320655 original size:40 final size:40
Alignment explanation
Indices: 37320565--37320789 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
37320555 TCGAATGATG
* * * *
37320565 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37320605 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
37320645 TTCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37320684 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37320724 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37320765 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37320790 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 117 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37320803 original size:40 final size:39
Alignment explanation
Indices: 37320652--37320822 Score: 147
Period size: 40 Copynumber: 4.3 Consensus size: 39
37320642 AATTTCAGGC
*
37320652 TAAG-CCCGAAGGCATTGGTG-CGAGTTACTA-AATCCGGGT
1 TAAGTCCCGAAGGCATT--TGAAGAGTTACTATAA-CCGGGT
**
37320691 TAAGTCCCGAAGGCATTTGTGTGAGTTACTA-AATCCGGGT
1 TAAGTCCCGAAGGCATTTG-AAGAGTTACTATAA-CCGGGT
* *
37320731 TAAGTCCCGAAGGCATTTGTGAGAGTTACTATAACCGGGC
1 TAAGTCCCGAAGGCATTTG-AAGAGTTACTATAACCGGGT
* *
37320771 TATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
1 TAAGTCCCGAAGGCATTTGAA-GAGTTA-CTATAACCGGGT
* *
37320810 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
37320823 TACGTGATTT
Statistics
Matches: 116, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.02
39 19 0.16
40 93 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTTGAAGAGTTACTATAACCGGGT
Found at i:37320807 original size:80 final size:79
Alignment explanation
Indices: 37320604--37320822 Score: 212
Period size: 80 Copynumber: 2.8 Consensus size: 79
37320594 AAGTGACCAT
* ** * * * *
37320604 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTTCAGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTTACTAA-ATCCGGTTAAGTCCCGAAGGCAT
*
37320667 TGGTGCGAGTTACTAA
64 TGGTGAGAGTTACTAA
* ***
37320683 ATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAGTCCCGAAGGCATT
*
37320748 TGTGAGAGTTACTATA
65 GGTGAGAGTTACTA-A
* * * *
37320764 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAAGTCCCGAAGG
37320823 TACGTGATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.47
80 57 0.48
81 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAGTCCCGAAGGCATTG
GTGAGAGTTACTAA
Found at i:37320811 original size:119 final size:119
Alignment explanation
Indices: 37320565--37320822 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 119
37320555 TCGAATGATG
* *
37320565 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** **
37320630 GTGCGAGATACTAATTTCAGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGAGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
37320684 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
37320747 TTGTGAGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGAGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
37320804 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37320823 TACGTGATTT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 82 0.71
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGAGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:37327319 original size:56 final size:56
Alignment explanation
Indices: 37327233--37327352 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
37327223 ACAAGGGATG
37327233 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
37327289 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
37327345 ATGGGCAA
1 ATGGGCAA
37327353 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:37332156 original size:18 final size:18
Alignment explanation
Indices: 37332133--37332168 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
37332123 TGTGTTATCA
37332133 GGTTGCTTACTGATTTTC
1 GGTTGCTTACTGATTTTC
37332151 GGTTGCTTACTGATTTTC
1 GGTTGCTTACTGATTTTC
37332169 TTTTCATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (18 bp):
GGTTGCTTACTGATTTTC
Found at i:37339320 original size:22 final size:22
Alignment explanation
Indices: 37339292--37339336 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37339282 TGACGTAATG
37339292 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
37339314 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
37339336 T
1 T
37339337 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:37343093 original size:22 final size:22
Alignment explanation
Indices: 37343065--37343109 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37343055 AGGGGGAGTG
37343065 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
37343087 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
37343109 T
1 T
37343110 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:37350437 original size:48 final size:47
Alignment explanation
Indices: 37350376--37350529 Score: 179
Period size: 48 Copynumber: 3.3 Consensus size: 47
37350366 ATTACGAGAA
*
37350376 CTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGAGATGCAAG
1 CTAGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGAGATGCAAG
* * *
37350424 CTAGTGTAAGACATGTCTGAGACATGTATCGGCATTGAGACGA-G--AG
1 CTAGTGTAAGACATGTCTG-GACATGCATCGGCCTCGAGA-GATGCAAG
* * * *
37350470 CTGGTGCAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAG
1 CTAGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGAGATGCAAG
37350518 CTAGTGTAAGAC
1 CTAGTGTAAGAC
37350530 CTATTTGGGA
Statistics
Matches: 87, Mismatches: 13, Indels: 12
0.78 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 35 0.40
47 2 0.02
48 47 0.54
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGAGATGCAAG
Found at i:37350541 original size:48 final size:47
Alignment explanation
Indices: 37350329--37350529 Score: 176
Period size: 46 Copynumber: 4.3 Consensus size: 47
37350319 TGATATGTGT
* * * * *
37350329 GCTAGTGTAAGACATGTCTGGGATATGCATCAG--AC-ACATTACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAATAC-A-A
* * * *
37350375 ACTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGAGATGCAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-ATACAA
* * * * ** *
37350423 GCTAGTGTAAGACATGTCTGAGACATGTATCGGCATTGAGACGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAATACAA
* *
37350469 GCTGGTGCAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-ATACAA
37350517 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
37350530 CTATTTGGGA
Statistics
Matches: 118, Mismatches: 31, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
46 64 0.54
47 1 0.01
48 48 0.41
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAATACAA
Found at i:37353154 original size:19 final size:19
Alignment explanation
Indices: 37353130--37353168 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
37353120 TGTACGAGAT
**
37353130 TTGCACTTTGGTGCCTTTG
1 TTGCACTTCAGTGCCTTTG
37353149 TTGCACTTCAGTGCCTTTG
1 TTGCACTTCAGTGCCTTTG
37353168 T
1 T
37353169 ATACACTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.08, C:0.23, G:0.23, T:0.46
Consensus pattern (19 bp):
TTGCACTTCAGTGCCTTTG
Found at i:37353177 original size:20 final size:19
Alignment explanation
Indices: 37353140--37353177 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
37353130 TTGCACTTTG
*
37353140 GTGCCTTTGTTGCACTTCA
1 GTGCCTTTGTTACACTTCA
37353159 GTGCCTTTGTATACACTTC
1 GTGCCTTTGT-TACACTTC
37353178 CGTGTCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.42
Consensus pattern (19 bp):
GTGCCTTTGTTACACTTCA
Found at i:37358378 original size:55 final size:53
Alignment explanation
Indices: 37358258--37358445 Score: 202
Period size: 55 Copynumber: 3.5 Consensus size: 53
37358248 AACTTACCAT
* * *
37358258 TGCCATGTCTTGACATGGTCTTACGT-GGTATCCTTGCCTTA-CGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATAGG-A-CCTTGCCTTATAGAACTCATCAA
* *
37358311 TGCCATGCCTTGACATGGTCTTACATAGGACCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATAGGACC-TTGCCTTATAG-AACTCATCAA
*** *
37358366 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACAT-AGGACCTTGCCTTATAGAACTCATCAA
* *
37358420 TGCCATG-CTTTGGCATGGTCTCACAT
1 TGCCATGTC-TTGACATGGTCTTACAT
37358446 GATATCCTTA
Statistics
Matches: 116, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
52 2 0.02
53 33 0.28
54 34 0.29
55 44 0.38
56 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATAGGACCTTGCCTTATAGAACTCATCAA
Found at i:37358697 original size:44 final size:44
Alignment explanation
Indices: 37358648--37358731 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
37358638 TCCTTAACCA
* *
37358648 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTTTG
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTTTG
* *
37358692 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
37358732 GAGATATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTTTG
Found at i:37363294 original size:40 final size:41
Alignment explanation
Indices: 37363250--37363327 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
37363240 ACCAACATTT
** *
37363250 AGCCTGCTAGGTTTTAAACCTGAATTCA-TCACCGGCACGA
1 AGCCTGCTAGACTTTAAACCTGAACTCATTCACCGGCACGA
**
37363290 AGCCTGCTAGACTTTAAGTCTGAACTCATTCACCGGCA
1 AGCCTGCTAGACTTTAAACCTGAACTCATTCACCGGCA
37363328 TTTCGCCTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 23 0.72
41 9 0.28
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACTTTAAACCTGAACTCATTCACCGGCACGA
Found at i:37363391 original size:43 final size:43
Alignment explanation
Indices: 37363318--37363441 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 43
37363308 TCTGAACTCA
* *
37363318 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* * * *
37363360 TTCACTGGCATTATAGCCTACTAGGCCTGAAGCCTGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* *
37363403 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
37363442 ATATTATTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
42 11 0.16
43 59 0.84
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
Found at i:37381005 original size:40 final size:40
Alignment explanation
Indices: 37380927--37381150 Score: 258
Period size: 40 Copynumber: 5.5 Consensus size: 40
37380917 ACCCAAGTAT
* *
37380927 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
37380966 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
37381006 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
37381046 TTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
37381089 CTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
37381129 AC-TCGGGACTTAGCCTGGATAT
1 -CTTCGGGACTTAGCCCGGATAT
37381151 CATCCGAATA
Statistics
Matches: 158, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 12 0.08
40 110 0.70
41 2 0.01
43 34 0.22
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:37381123 original size:83 final size:80
Alignment explanation
Indices: 37380927--37381150 Score: 263
Period size: 83 Copynumber: 2.8 Consensus size: 80
37380917 ACCCAAGTAT
* * * * *
37380927 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCATTCGGGACTTAGCCCGGATATAGT
**
37380991 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* * * *
37381006 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCTTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCATTCGGGACTTAGCCCGGATATAGT
37381070 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * * *
37381089 CTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATGCACTCGGGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCATTCGGGACTTAGCCCGGATAT
37381151 CATCCGAATA
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 13 0.11
80 47 0.39
83 62 0.51
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCATTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:37386499 original size:13 final size:13
Alignment explanation
Indices: 37386481--37386508 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37386471 TGGTGAACAA
37386481 AACCAAAATGAAG
1 AACCAAAATGAAG
37386494 AACCAAAATGAAG
1 AACCAAAATGAAG
37386507 AA
1 AA
37386509 GAAAACTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.14, G:0.14, T:0.07
Consensus pattern (13 bp):
AACCAAAATGAAG
Found at i:37390766 original size:17 final size:19
Alignment explanation
Indices: 37390737--37390773 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
37390727 TTAGAATTCT
37390737 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
37390755 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
37390773 T
1 T
37390774 GGGTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:37396930 original size:27 final size:27
Alignment explanation
Indices: 37396900--37397212 Score: 326
Period size: 27 Copynumber: 11.6 Consensus size: 27
37396890 TTAGTTTACC
37396900 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
37396927 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37396954 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
37396981 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37397008 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
37397035 AAATCACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
37397062 AAATTACCAAAATA-CCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37397088 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
37397115 AAATTACCAAAATACCCCTAATTTGCA
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
37397142 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** **
37397169 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
37397196 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
37397213 TTGATTACAG
Statistics
Matches: 242, Mismatches: 41, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 27 0.11
27 213 0.88
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:37396965 original size:54 final size:54
Alignment explanation
Indices: 37396900--37397159 Score: 387
Period size: 54 Copynumber: 4.8 Consensus size: 54
37396890 TTAGTTTACC
37396900 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
37396954 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
37397008 AAATTACCAAAATACCCTTGGTTTGTAAAATCACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
37397062 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
** * *
37397115 AAATTACCAAAATACCCCTAATTTGCAAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
37397160 CGACCTGTAA
Statistics
Matches: 184, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 48 0.26
54 136 0.74
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:37397037 original size:81 final size:80
Alignment explanation
Indices: 37396900--37397212 Score: 365
Period size: 81 Copynumber: 3.9 Consensus size: 80
37396890 TTAGTTTACC
* *
37396900 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATCACCAAA
*
37396965 ATACCCCTGGTTTGTA
65 ATACCCCTAGTTTGTA
* ** *
37396981 AAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATCACTAAA
1 AAATTACCAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATCACCAAA
* * *
37397046 ATACCCTTTGTTTATA
65 ATACCCCTAGTTTGTA
* *
37397062 AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATCACCAAAA
* *
37397127 TACCCCTAATTTGCA
66 TACCCCTAGTTTGTA
** *** ** * ** *
37397142 AAATTACTGAAATACCCTCGACCTGTAAAATTATTAAAATACCCTCGACTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATCACCAAA
*
37397207 GTACCC
65 ATACCC
37397213 TTGATTACAG
Statistics
Matches: 198, Mismatches: 32, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
80 71 0.36
81 127 0.64
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATCACCAAAA
TACCCCTAGTTTGTA
Found at i:37397169 original size:54 final size:54
Alignment explanation
Indices: 37396900--37397218 Score: 367
Period size: 54 Copynumber: 5.9 Consensus size: 54
37396890 TTAGTTTACC
*
37396900 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
* * * * *
37396954 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
* *
37397008 AAATTACCAAAATACCCTTGGTTTGTAAAATCACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC-TTGATTTATA
* *
37397062 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTT-AGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGA-TTTATA
** * * * ** *
37397115 AAATTACCAAAATACCCCTAATTTGCAAAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
** ** * *
37397169 AAATTATTAAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATT
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCTTGATT
37397219 ACAGAATTAC
Statistics
Matches: 226, Mismatches: 33, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
52 2 0.01
53 49 0.22
54 171 0.76
55 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
Found at i:37397238 original size:134 final size:133
Alignment explanation
Indices: 37396925--37397261 Score: 325
Period size: 134 Copynumber: 2.5 Consensus size: 133
37396915 CCCTGGTTTG
* * * * *
37396925 TAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCA
1 TAAAATTACCAAAATACCC-TGGATTACAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCA
* ** * *** *
37396990 AAATACCATTGGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATCACTAAAATACCCTTT
64 AAATACCACTAATTTACAAAATTACCAAAATACCCTCGACCTGTAAAATCACTAAAATACCCTTC
*
37397055 GTTTA
129 GCTTA
* **
37397060 TAAAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAA
1 TAAAATTACCAAAATACCCTGGATTACAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAA
* * ** * *
37397125 AATACCCCTAATTTGCAAAATTACTGAAATACCCTCGACCTGTAAAATTATTAAAATACCC-TCG
65 AATACCACTAATTTACAAAATTACCAAAATACCCTCGACCTGTAAAATCACTAAAATACCCTTCG
*
37397189 ACTTG
130 -CTTA
* * * **** * *
37397194 TAAAATTACCAAAGTACCCTTGATTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCAA
1 TAAAATTACCAAAATACCCTGGATTACAAAATTACCAAAATACCCTAG-TTTGTAAAATTACCAA
37397259 AAT
65 AAT
37397262 GCCCTTGTAG
Statistics
Matches: 167, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
133 7 0.04
134 142 0.85
135 18 0.11
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (133 bp):
TAAAATTACCAAAATACCCTGGATTACAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAA
ATACCACTAATTTACAAAATTACCAAAATACCCTCGACCTGTAAAATCACTAAAATACCCTTCGC
TTA
Found at i:37397266 original size:27 final size:27
Alignment explanation
Indices: 37396900--37397266 Score: 280
Period size: 27 Copynumber: 13.7 Consensus size: 27
37396890 TTAGTTTACC
*
37396900 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * *
37396927 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
37396954 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * **
37396981 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
37397008 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
37397035 AAATCACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
37397062 AAATTACCAAAATACCCT-GGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
37397088 AAATTACCAAAATACCCT-TAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
37397115 AAATTACCAAAATACCC-CTAATTTGCA
1 AAATTACCAAAATACCCTC-GATTTGTA
** **
37397142 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
37397169 AAATTATTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
37397196 AAATTACCAAAGTACCCTTGA-TTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** *
37397222 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
37397249 AAATTACCAAAATGCCCT
1 AAATTACCAAAATACCCT
37397267 TGTAGGGTAG
Statistics
Matches: 277, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.00
26 42 0.15
27 229 0.83
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:37397283 original size:27 final size:27
Alignment explanation
Indices: 37397250--37397768 Score: 709
Period size: 27 Copynumber: 19.3 Consensus size: 27
37397240 CGATTTATAA
* * *
37397250 AATTACCAAAATGCCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37397277 AAATACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37397304 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37397331 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37397358 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37397385 AATTACCGGAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37397412 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
37397439 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37397466 AATTACCGAAAAACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37397493 AATTACCGGAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37397520 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37397547 AATTACC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
37397574 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
37397601 AATTACTGGAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
37397628 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37397655 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
37397682 AACTACCGAAATAACTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
37397709 AATTACCAAAATACCCATGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
37397736 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
37397762 AATTACC
1 AATTACC
37397769 ATTTTGCCCC
Statistics
Matches: 434, Mismatches: 56, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
26 17 0.04
27 416 0.96
28 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:37398228 original size:22 final size:22
Alignment explanation
Indices: 37398198--37398259 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
37398188 AAGCCTTATG
* *
37398198 ATTATGGCTTTGTGTCAACCTA
1 ATTATGGCTCTGTGCCAACCTA
37398220 CA-TATGGCTCTGTGCCAACCTA
1 -ATTATGGCTCTGTGCCAACCTA
*
37398242 ATTATGGCTGTGTGCCAA
1 ATTATGGCTCTGTGCCAA
37398260 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAACCTA
Found at i:37398478 original size:27 final size:27
Alignment explanation
Indices: 37398425--37398491 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
37398415 TAAGTGCCGT
* * *
37398425 TGCCACATTATCTAT-TCTGGTGGCTC
1 TGCCACAATATCTGTATCTGGTGACTC
*
37398451 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
*
37398478 TGTCACAATATCTG
1 TGCCACAATATCTG
37398492 ATAACTGAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 12 0.35
27 22 0.65
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:37398666 original size:6 final size:6
Alignment explanation
Indices: 37398628--37398798 Score: 86
Period size: 6 Copynumber: 27.3 Consensus size: 6
37398618 TTGCATTCAC
* * *
37398628 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG A-TTCTG ATTCTG
* * * *
37398679 -TTACTTG ATACTG ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
37398729 ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTG ATTCTG -TCACGTG
1 ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
37398779 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
37398799 AATGTTTCTT
Statistics
Matches: 126, Mismatches: 18, Indels: 42
0.68 0.10 0.23
Matches are distributed among these distances:
5 11 0.09
6 83 0.66
7 26 0.21
8 5 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:37398693 original size:19 final size:19
Alignment explanation
Indices: 37398639--37398696 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
37398629 TTCTGATTTT
*
37398639 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACTTGATAC
*
37398658 TGATTCTG--A-TT--T-T
1 TGATTCTGTTACTTGATAC
37398671 TGATTCTGTTACTTGATAC
1 TGATTCTGTTACTTGATAC
37398690 TGATTCT
1 TGATTCT
37398697 AATTTTGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 12
0.67 0.07 0.27
Matches are distributed among these distances:
13 8 0.27
14 1 0.03
15 1 0.03
16 3 0.10
17 1 0.03
18 1 0.03
19 15 0.50
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.50
Consensus pattern (19 bp):
TGATTCTGTTACTTGATAC
Found at i:37398706 original size:31 final size:31
Alignment explanation
Indices: 37398636--37398790 Score: 220
Period size: 31 Copynumber: 5.0 Consensus size: 31
37398626 ACATTCTGAT
*
37398636 TTTTGATTCTGTTACCTGATACTGATTCTGAT
1 TTTTGATTCTGTTACCTGATACTGATTCT-AA
*
37398668 TTTTGATTCTGTTACTTGATACTGATTCTAA
1 TTTTGATTCTGTTACCTGATACTGATTCTAA
*
37398699 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTAA
* *
37398730 TTTTGATTCTGTTACCTGATATTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTAA
* * * *
37398761 TTCTGATTCTGTCACGTGATTCTGATTCTA
1 TTTTGATTCTGTTACCTGATACTGATTCTA
37398791 GTTCTGATAA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 84 0.75
32 28 0.25
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTAA
Found at i:37398730 original size:25 final size:23
Alignment explanation
Indices: 37398720--37398815 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
37398710 TTACCTGATA
* *
37398720 CTGATTCTGATTTTGATTCTGTT
1 CTGATACTGATTCTGATTCTGTT
*
37398743 ACCTGATATTGATTCTGATTCTGATT
1 --CTGATACTGATTCTGATTCTG-TT
37398769 CTG-TCACGTGATTCTGATTCTAGTT
1 CTGAT-AC-TGATTCTGATTCT-GTT
* * *
37398794 CTGATAATGTTTCTTATTCTGT
1 CTGATACTGATTCTGATTCTGT
37398816 AATGGGTTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
23 3 0.05
24 15 0.25
25 37 0.63
26 4 0.07
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.50
Consensus pattern (23 bp):
CTGATACTGATTCTGATTCTGTT
Found at i:37398754 original size:19 final size:19
Alignment explanation
Indices: 37398701--37398759 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
37398691 GATTCTAATT
37398701 TTGATTCTGTTACCTGATA
1 TTGATTCTGTTACCTGATA
*
37398720 CTGATTCTG--A--T--T-
1 TTGATTCTGTTACCTGATA
37398732 TTGATTCTGTTACCTGATA
1 TTGATTCTGTTACCTGATA
37398751 TTGATTCTG
1 TTGATTCTG
37398760 ATTCTGATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
12 8 0.26
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 17 0.55
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.49
Consensus pattern (19 bp):
TTGATTCTGTTACCTGATA
Found at i:37401231 original size:24 final size:23
Alignment explanation
Indices: 37401195--37401314 Score: 81
Period size: 24 Copynumber: 5.2 Consensus size: 23
37401185 GACACAAACG
37401195 TAGCTCTTTATGAG-TGTCCTGATA
1 TAGCTC-TTATGAGCT-TCCTGATA
37401219 TAGGCTCTTATGAGCTTCCTGATA
1 TA-GCTCTTATGAGCTTCCTGATA
*
37401243 TAGCTCTCT-TGAACTTCCT-AT-
1 TAGCTCT-TATGAGCTTCCTGATA
* *
37401264 TAAGCTC-AATGAGCTTCCT-ATTT
1 T-AGCTCTTATGAGCTTCCTGA-TA
* * *
37401287 TAAACTCTTATGAGTTTCTTGATA
1 T-AGCTCTTATGAGCTTCCTGATA
37401311 TAGC
1 TAGC
37401315 CTAGATAAGA
Statistics
Matches: 78, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
21 11 0.14
22 8 0.10
23 22 0.28
24 31 0.40
25 6 0.08
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (23 bp):
TAGCTCTTATGAGCTTCCTGATA
Found at i:37401259 original size:23 final size:24
Alignment explanation
Indices: 37401211--37401261 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
37401201 TTTATGAGTG
*
37401211 TCCTGATATAGGCTCTTATGAGCT
1 TCCTGATATAGGCTCTTATGAACT
37401235 TCCTGATATA-GCTCTCT-TGAACT
1 TCCTGATATAGGCTCT-TATGAACT
37401258 TCCT
1 TCCT
37401262 ATTAAGCTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (24 bp):
TCCTGATATAGGCTCTTATGAACT
Done.