Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 111 of 343
Found at i:37406165 original size:31 final size:31
Alignment explanation
Indices: 37406123--37406199 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
37406113 TAACGGTTAT
*
37406123 TGGGCCAAAGCCTTTTCATAAATCAAATCAC
1 TGGGCCGAAGCCTTTTCATAAATCAAATCAC
*
37406154 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCAAATCAC
37406185 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
37406200 ATTGTAAACG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCAAATCAC
Found at i:37406283 original size:42 final size:42
Alignment explanation
Indices: 37406223--37406314 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
37406213 TGGCCCATAG
*
37406223 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
37406265 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
37406307 GCCCATTT
1 GCCCATTT
37406315 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:37406501 original size:26 final size:26
Alignment explanation
Indices: 37406459--37406607 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
37406449 CCTCTTTAAT
*
37406459 AACTGGGGCA-AAGCCTTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
* *
37406484 AACTTGGG-AAAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
37406509 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
* *
37406535 AACTGGGGCATAATCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
***
37406561 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTGGTA
37406587 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
37406608 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
24 1 0.01
25 28 0.25
26 84 0.74
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTTGGTA
Found at i:37406682 original size:20 final size:20
Alignment explanation
Indices: 37406657--37406713 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
37406647 TTATGAATTC
*
37406657 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
37406676 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
37406697 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
37406714 CCACGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:37407452 original size:27 final size:27
Alignment explanation
Indices: 37407415--37407514 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
37407405 TATTCATCAT
*
37407415 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCCTACAGGGGTATTACGGTCAC
*
37407442 TTTACCCTACAGGGGCATTACGGTCAC
1 TTTACCCTACAGGGGTATTACGGTCAC
* *
37407469 TTTACCCTGCAGGGGCT-TTACGGTCAT
1 TTTACCCTACAGGGG-TATTACGGTCAC
*
37407496 TTTA-CCTAATAGGGGTATT
1 TTTACCCT-ACAGGGGTATT
37407515 TTAGTCATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
26 4 0.06
27 59 0.94
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (27 bp):
TTTACCCTACAGGGGTATTACGGTCAC
Found at i:37407585 original size:27 final size:27
Alignment explanation
Indices: 37407555--37407638 Score: 82
Period size: 27 Copynumber: 3.0 Consensus size: 27
37407545 GTAAATCTAC
37407555 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
37407582 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
37407608 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
37407638 A
1 A
37407639 GATCAGAGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
26 1 0.02
27 22 0.48
28 5 0.11
29 17 0.37
30 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:37407760 original size:27 final size:27
Alignment explanation
Indices: 37407646--37407744 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
37407636 GTAGATCAGA
* *
37407646 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTCTACAAACTAG-G
* * * *
37407673 GGTATTTCGATAATT-TCACAAACCAGT
1 GGTATTTTGGTAATTCT-ACAAACTAGG
*
37407700 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTCTACAAACTAGG
37407727 GGTATTTTGGTAATTCTA
1 GGTATTTTGGTAATTCTA
37407745 TCCTACAGGG
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 56 0.95
28 2 0.03
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTCTACAAACTAGG
Found at i:37407807 original size:27 final size:27
Alignment explanation
Indices: 37407773--37407970 Score: 256
Period size: 27 Copynumber: 7.3 Consensus size: 27
37407763 ATAATTTCAC
*
37407773 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
37407800 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
37407827 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
37407854 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
37407881 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
37407908 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* **
37407935 AATCGAGGGTAAAATC-GTAATTCTACA
1 AATCGAGGGTAAAA-CGGTAATTTTGTA
37407962 AATCGAGGG
1 AATCGAGGG
37407971 CATTTTAGTA
Statistics
Matches: 152, Mismatches: 16, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 149 0.98
28 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:37407842 original size:54 final size:54
Alignment explanation
Indices: 37407773--37407970 Score: 283
Period size: 54 Copynumber: 3.7 Consensus size: 54
37407763 ATAATTTCAC
* * *
37407773 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
37407827 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * *
37407881 AATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* **
37407935 AATCGAGGGTAAAATC-GTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAA-CGGTAATTTTGTAAATCGAGGG
37407971 CATTTTAGTA
Statistics
Matches: 132, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
54 130 0.98
55 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:37407888 original size:81 final size:81
Alignment explanation
Indices: 37407773--37407970 Score: 288
Period size: 81 Copynumber: 2.4 Consensus size: 81
37407763 ATAATTTCAC
* * * * * *
37407773 AATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
* *
37407838 AAACGGTAATTTTGTA
66 AAACGGTAATTCTATA
*
37407854 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
37407919 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* * *
37407935 AATCGAGGGTAAAATCGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGG
37407971 CATTTTAGTA
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:37417585 original size:38 final size:38
Alignment explanation
Indices: 37417534--37417610 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
37417524 TCCATAATCA
37417534 AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
1 AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
*
37417572 AATTTGATTTATTCTCCCTTTTTATTCTATTGGATTTT
1 AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
37417610 A
1 A
37417611 TCTTTTTATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.13, G:0.06, T:0.60
Consensus pattern (38 bp):
AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
Found at i:37432737 original size:8 final size:8
Alignment explanation
Indices: 37432724--37432770 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
37432714 ACACCCAGAT
37432724 TCACATAA
1 TCACATAA
37432732 TCACATATA
1 TCACATA-A
37432741 T-ACATAA
1 TCACATAA
* *
37432748 TCTCATGA
1 TCACATAA
*
37432756 GCACATAA
1 TCACATAA
37432764 TCACATA
1 TCACATA
37432771 GTTCCTAGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
7 2 0.06
8 27 0.87
9 2 0.06
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (8 bp):
TCACATAA
Found at i:37438731 original size:20 final size:20
Alignment explanation
Indices: 37438706--37438746 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
37438696 GAATACGAAG
37438706 GAGTCTGAGTTGAAAATTGA
1 GAGTCTGAGTTGAAAATTGA
37438726 GAGTCTGAGTTGAAAATTGA
1 GAGTCTGAGTTGAAAATTGA
37438746 G
1 G
37438747 TTAGTACTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.32, T:0.29
Consensus pattern (20 bp):
GAGTCTGAGTTGAAAATTGA
Found at i:37444353 original size:18 final size:18
Alignment explanation
Indices: 37444330--37444375 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
37444320 CTTGGTATTT
37444330 TTTCGATTTTAGCCCGAA
1 TTTCGATTTTAGCCCGAA
37444348 TTTCGATTTTAGCCCGAA
1 TTTCGATTTTAGCCCGAA
37444366 TTTCGATTTT
1 TTTCGATTTT
37444376 CCTTTCTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (18 bp):
TTTCGATTTTAGCCCGAA
Found at i:37446816 original size:30 final size:29
Alignment explanation
Indices: 37446774--37446830 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
37446764 AAAGATAACA
* *
37446774 AGAAAACCGAATAAAGAAATCTAAGATTG
1 AGAAAACCGAATAAAAAAATCCAAGATTG
*
37446803 AGAAACCCAGAATAAAAAAATCCAAGAT
1 AGAAAACC-GAATAAAAAAATCCAAGAT
37446831 ACGATACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.58, C:0.14, G:0.14, T:0.14
Consensus pattern (29 bp):
AGAAAACCGAATAAAAAAATCCAAGATTG
Found at i:37449847 original size:46 final size:46
Alignment explanation
Indices: 37449789--37449937 Score: 151
Period size: 46 Copynumber: 3.2 Consensus size: 46
37449779 ACTCAGACGA
*
37449789 AACTCAATGAGCTCGGGCGTTTGCATCCATAACTGAACTCGGACTC
1 AACTCAACGAGCTCGGGCGTTTGCATCCATAACTGAACTCGGACTC
* * * *
37449835 AACTCAACGAGCTCGAATGCCTAGTTACAT-C-TCAC-GAACTCGGACTC
1 AACTCAACGAGCTCG--GGCGT--TTGCATCCATAACTGAACTCGGACTC
* * * * *
37449882 AACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTC
1 AACTCAACGAGCTCGGGCGTTTGCATCCATAACTGAACTCGGACTC
37449928 AACTCAACGA
1 AACTCAACGA
37449938 CTTCGGATGC
Statistics
Matches: 82, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
43 4 0.05
44 1 0.01
45 4 0.05
46 35 0.43
47 26 0.32
48 6 0.07
49 1 0.01
50 5 0.06
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
AACTCAACGAGCTCGGGCGTTTGCATCCATAACTGAACTCGGACTC
Found at i:37450876 original size:13 final size:13
Alignment explanation
Indices: 37450858--37450882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37450848 TAATGGTATA
37450858 TTGAATCCATGAT
1 TTGAATCCATGAT
37450871 TTGAATCCATGA
1 TTGAATCCATGA
37450883 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:37452591 original size:51 final size:49
Alignment explanation
Indices: 37452455--37453068 Score: 987
Period size: 49 Copynumber: 12.6 Consensus size: 49
37452445 TTATTCATTG
* *
37452455 GAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
37452502 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
37452551 GAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37452602 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
37452651 GAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGAT
37452702 GAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGAT
37452753 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37452802 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
37452851 GAATGTGAAAGTGTATATATATGTGCTAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
37452900 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
37452947 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
37452994 GAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
37453041 GGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GAATGTGAAAGTGTATATATATGTGATAAG
37453069 TCCCGAAGGG
Statistics
Matches: 540, Mismatches: 19, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
47 153 0.28
48 1 0.00
49 238 0.44
51 148 0.27
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:37452624 original size:100 final size:98
Alignment explanation
Indices: 37452455--37453068 Score: 987
Period size: 100 Copynumber: 6.3 Consensus size: 98
37452445 TTATTCATTG
* *
37452455 GAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
37452518 ATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 ATATATGTGATAAGGCCTAATGGCCAATGTGAT
37452551 GAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 GAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37452616 ATATATATGTGATAAGGCCTAATGGCCAATGTGAT
64 ATATATATGTGATAAGGCCTAATGGCCAATGTGAT
37452651 GAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 GAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
*
37452716 ATATATATATGTGATAAGGCCTAATGGCCGATGTGAT
63 -TATATATATGTGATAAGGCCTAATGGCCAATGTGAT
37452753 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
37452818 ATATATGTGATAAGGCCTAATGGCCAATGTGAT
66 ATATATGTGATAAGGCCTAATGGCCAATGTGAT
* *
37452851 GAATGTGAAAGTGTATATATATGTGCTAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
37452914 ATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 ATATATGTGATAAGGCCTAATGGCCAATGTGAT
37452947 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * *
37453008 ATATATGTGACAGGGCCGAGTGGCCAACGTGAT
66 ATATATGTGATAAGGCCTAATGGCCAATGTGAT
*
37453041 GGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GAATGTGAAAGTGTATATATATGTGATAAG
37453069 TCCCGAAGGG
Statistics
Matches: 493, Mismatches: 17, Indels: 18
0.93 0.03 0.03
Matches are distributed among these distances:
94 95 0.19
95 1 0.00
96 61 0.12
98 95 0.19
100 193 0.39
102 48 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (98 bp):
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCAATGTGAT
Found at i:37467323 original size:37 final size:37
Alignment explanation
Indices: 37467273--37467351 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37467263 TTATTACGAA
* * *
37467273 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37467310 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37467347 GTCTT
1 GTCTT
37467352 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37467607 original size:47 final size:47
Alignment explanation
Indices: 37467470--37467940 Score: 687
Period size: 47 Copynumber: 10.1 Consensus size: 47
37467460 CCTTTCGGGA
* * * * * * * * *
37467470 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37467517 CTTGTCACATATATATAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37467563 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37467610 CTTATCACA-ACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37467656 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
37467703 CCTATCACACATATACACTTTCACATTCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37467750 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37467797 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37467844 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37467891 C-TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37467937 CTTA
1 CTTA
37467941 CTATCATTTC
Statistics
Matches: 392, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
46 125 0.32
47 267 0.68
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37471467 original size:37 final size:39
Alignment explanation
Indices: 37471383--37471608 Score: 252
Period size: 40 Copynumber: 5.9 Consensus size: 39
37471373 CCCGATAACG
* * * *
37471383 TCACCAGCATGATTGCT-TTCGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
* * * * *
37471421 ACACCAGCACGAATG--CTTCTGG-GTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATA
* *
37471458 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATATA
37471498 TCACTAGCATGAATGCTCTTCGGACTTAGCCC-G--ATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
*
37471534 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATA
37471574 TCACTAGCATGAATGCTC-TCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGA
37471609 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 19
0.83 0.08 0.10
Matches are distributed among these distances:
36 23 0.14
37 38 0.23
38 18 0.11
39 30 0.18
40 54 0.33
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
Found at i:37471501 original size:40 final size:40
Alignment explanation
Indices: 37471444--37471608 Score: 259
Period size: 40 Copynumber: 4.2 Consensus size: 40
37471434 TGCTTCTGGG
* * * *
37471444 TTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGAC
37471484 TTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGAC
1 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGAC
37471523 TTAGCCC-GAT--ATCACTAGCATGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGAC
37471560 TTAGCCCGGATACATCACTAGCATGAATGCTC-TCGGGAC
1 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGAC
37471599 TTAGCCCGGA
1 TTAGCCCGGA
37471609 CATCATTCAA
Statistics
Matches: 117, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
36 22 0.19
37 11 0.09
38 6 0.05
39 27 0.23
40 51 0.44
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGAC
Found at i:37471540 original size:76 final size:76
Alignment explanation
Indices: 37471455--37471606 Score: 270
Period size: 76 Copynumber: 2.0 Consensus size: 76
37471445 TAGCACGGAT
37471455 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-
1 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTC-TCG
37471519 GGACTTAGCCCG
65 GGACTTAGCCCG
* *
37471531 ATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTCGG
1 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTCGG
37471596 GACTTAGCCCG
66 GACTTAGCCCG
37471607 GACATCATTC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
75 2 0.03
76 71 0.97
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (76 bp):
ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTCGG
GACTTAGCCCG
Found at i:37471950 original size:29 final size:29
Alignment explanation
Indices: 37471911--37471989 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
37471901 CTTAATAATC
*
37471911 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
37471941 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
37471970 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37471990 AATCTCACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37473928 original size:37 final size:37
Alignment explanation
Indices: 37473878--37473956 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37473868 TTATTACGAA
* * *
37473878 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37473915 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37473952 GTCTT
1 GTCTT
37473957 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37474162 original size:47 final size:47
Alignment explanation
Indices: 37474075--37474550 Score: 709
Period size: 47 Copynumber: 10.1 Consensus size: 47
37474065 CCTTTCGGGA
* * * * * * * * *
37474075 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37474122 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37474169 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37474216 CTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37474263 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37474310 CCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37474357 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37474404 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37474451 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37474498 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37474547 CTTA
1 CTTA
37474551 CTATCATTTC
Statistics
Matches: 400, Mismatches: 27, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
47 359 0.90
49 41 0.10
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37477066 original size:46 final size:46
Alignment explanation
Indices: 37477016--37477189 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
37477006 GTTGAGCATT
*
37477016 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
37477062 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* * *
37477109 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
37477155 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37477190 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:37484604 original size:46 final size:46
Alignment explanation
Indices: 37484554--37484726 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
37484544 GTTGAGCGTT
37484554 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
* *
37484600 CGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAATGT-AACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G--TC
* * * *
37484646 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
* *
37484692 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37484727 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
41 2 0.02
42 7 0.06
44 2 0.02
46 88 0.81
48 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
Found at i:37490788 original size:40 final size:40
Alignment explanation
Indices: 37490733--37490837 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
37490723 TATTCGGATG
* *
37490733 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCAAAGGCAATTGTGCTAGTTACT
*
37490773 ATATCCGGACTAAGATCCAAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCAAAGGCAATTGTGCTAGTTACT
* **
37490813 ATAACCGGGTTAAG-TCCCAAAGGCA
1 ATATCCGGACTAAGAT-CCAAAGGCA
37490838 TTCGTGCGGG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.02
40 57 0.98
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCAAAGGCAATTGTGCTAGTTACT
Found at i:37490851 original size:40 final size:40
Alignment explanation
Indices: 37490752--37490889 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
37490742 CTAAGATCCG
* * * * **
37490752 AAGGCATTTGTGCTAGTTACTATATCCGGACTAAGAT-CCA
1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAG-TCCCA
*
37490792 AAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTCCCA
1 AAGGC-ATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCA
* *
37490832 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCA
37490872 AAGGCATTCGTGCTGGTT
1 AAGGCATTCGTGCTGGTT
37490890 GTTACATCCG
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 4 0.05
40 80 0.92
41 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (40 bp):
AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCA
Found at i:37498373 original size:45 final size:46
Alignment explanation
Indices: 37498211--37498392 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
37498201 TATATATACA
* * * *
37498211 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
37498257 CATCTCATACACGTTTCGTATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
37498303 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
37498349 CATCT-ATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
37498393 ATACACTTCC
Statistics
Matches: 126, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
45 37 0.29
46 89 0.71
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:37498422 original size:92 final size:91
Alignment explanation
Indices: 37498226--37498424 Score: 258
Period size: 92 Copynumber: 2.2 Consensus size: 91
37498216 CATACATATC
* * * *
37498226 TCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCGTATTAGCCATTCGGCT
1 TCACATTAGCCATTCGGCTTTACCTCATATCCATCT-ATACACATTTCGCATTAGCCATTCGGCT
* * *
37498291 TTACCTCATATCCATCTCATACACGTT--
65 TTACCACATAT--ATCACTTACACGTTCA
*
37498318 TCGCATTAGCCATTCGGCTTTACCTCATATCCATCTATACACATTTCGCATTAGCCATTCGGCTT
1 TCACATTAGCCATTCGGCTTTACCTCATATCCATCTATACACATTTCGCATTAGCCATTCGGCTT
*
37498383 TACCACATATATACACTTCCACGTTCA
66 TACCACATATAT-CACTTACACGTTCA
*
37498410 TCACATTGGCCATTC
1 TCACATTAGCCATTC
37498425 TGTCTTATCA
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
89 2 0.02
90 9 0.10
91 36 0.39
92 46 0.49
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.35
Consensus pattern (91 bp):
TCACATTAGCCATTCGGCTTTACCTCATATCCATCTATACACATTTCGCATTAGCCATTCGGCTT
TACCACATATATCACTTACACGTTCA
Found at i:37498440 original size:47 final size:47
Alignment explanation
Indices: 37498366--37498737 Score: 472
Period size: 47 Copynumber: 8.1 Consensus size: 47
37498356 ACACATTTCG
* * * * * * *
37498366 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
37498413 CATTGGCCATTCTGTCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
* *
37498460 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
*
37498507 CATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
* *
37498554 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
*
37498601 TATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
*
37498648 CATTGGCCATTC-G----GT--CATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
** * * * **
37498688 CATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
37498735 CAT
1 CAT
37498738 AAAATCCTAA
Statistics
Matches: 291, Mismatches: 26, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
40 35 0.12
41 1 0.00
42 1 0.00
45 1 0.00
46 2 0.01
47 251 0.86
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:37498577 original size:22 final size:21
Alignment explanation
Indices: 37498456--37498530 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 21
37498446 GTTCACATTC
37498456 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTC-GCCTT
* * * *
37498478 ATCACATATATGCATATTCACATT
1 ATCACAT-T-GGC-CATTCGCCTT
37498502 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTC-GCCTT
37498525 ATCACA
1 ATCACA
37498531 CATATGCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (21 bp):
ATCACATTGGCCATTCGCCTT
Found at i:37498678 original size:40 final size:40
Alignment explanation
Indices: 37498623--37498701 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
37498613 AGCCTTATCA
37498623 CATATATGCATGTTCACATTCATCACATTGGCCATTCGGT
1 CATATATGCATGTTCACATTCATCACATTGGCCATTCGGT
**
37498663 CATATATGCATGTTCACATTCATCACATTTTCCATTCGG
1 CATATATGCATGTTCACATTCATCACATTGGCCATTCGG
37498702 CCTTATCTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (40 bp):
CATATATGCATGTTCACATTCATCACATTGGCCATTCGGT
Found at i:37502578 original size:28 final size:28
Alignment explanation
Indices: 37502547--37502646 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
37502537 CTGACTGGTT
*
37502547 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
37502575 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
37502604 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
37502632 TCGCACACATAGTGC
1 TCGCACACATAGTGC
37502647 CTCAACTACT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.02
28 36 0.59
29 23 0.38
30 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:37502607 original size:29 final size:29
Alignment explanation
Indices: 37502574--37502673 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 29
37502564 GATTAAAGAA
37502574 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
37502603 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
37502631 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
37502660 CTGGCACACATAGT
1 CTCGCACACATAGT
37502674 ACTCGGTTGG
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.39
29 36 0.61
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:37502673 original size:57 final size:57
Alignment explanation
Indices: 37502547--37502707 Score: 214
Period size: 57 Copynumber: 2.8 Consensus size: 57
37502537 CTGACTGGTT
* * *
37502547 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
**
37502604 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * * * *
37502661 TGGCACACATAGTACTCGGTTGGAGAACTTGTACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
37502708 TAATTCCAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 92 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:37502779 original size:40 final size:40
Alignment explanation
Indices: 37502735--37503189 Score: 775
Period size: 40 Copynumber: 11.4 Consensus size: 40
37502725 CCTTCGAGGT
*
37502735 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
37502775 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
37502815 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
37502855 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
37502895 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
37502935 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
37502975 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
37503015 TTAGCCTGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
37503055 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
37503095 TTAGCCCGGATACATCACTAGCACTAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
**
37503135 TTAGCCCGGATATATCACTAGGGCGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
37503175 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
37503190 ATAACTCTCA
Statistics
Matches: 394, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 394 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:37504693 original size:46 final size:46
Alignment explanation
Indices: 37504640--37504822 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
37504630 TATATATACA
* * * * *
37504640 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACAGATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
37504686 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
37504732 CATCTCATACACGTTTTGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
37504778 CATCTCATACACATTTCGCATTAGCCACTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
37504823 ATACACTTCC
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:37504892 original size:47 final size:47
Alignment explanation
Indices: 37504838--37505128 Score: 492
Period size: 47 Copynumber: 6.2 Consensus size: 47
37504828 CTTCCACGTG
* *
37504838 CATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
* *
37504885 CAACACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
37504932 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
*
37504979 CATAACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
* ** *
37505026 CGTCACATTGGCCATTCAACCTTATCACACATATGCATGTTCCCATT
1 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
*
37505073 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
37505120 CATCACATT
1 CATCACATT
37505129 ACATTCATCA
Statistics
Matches: 229, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 229 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
Found at i:37504914 original size:22 final size:22
Alignment explanation
Indices: 37504888--37504960 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
37504878 TCACATTCAA
37504888 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCGGCCTTAT
* * *
37504910 CACATATATG-CATGTTC-ACATTCAT
1 CACAT-T-GGCCA--TTCGGCCTT-AT
37504935 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCGGCCTTAT
37504957 CACA
1 CACA
37504961 CATATGCATG
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 14 0.37
23 7 0.18
24 7 0.18
25 10 0.26
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (22 bp):
CACATTGGCCATTCGGCCTTAT
Found at i:37505004 original size:141 final size:147
Alignment explanation
Indices: 37504841--37505202 Score: 529
Period size: 141 Copynumber: 2.4 Consensus size: 147
37504831 CCACGTGCAT
* *
37504841 CACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCAACACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
*
37504906 TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
66 TTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
37504971 -T-TCACATT-CA-T-A
131 TTATCACATTACATTCA
* * **
37504983 -ACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCGTCACATTGGCCATTCAACC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
* *
37505047 TTATCACACATATGCATGTTCCCATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATG
66 TTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
37505112 TTCACATTCATCACATTACATTCA
131 ------TT-ATCACATTACATTCA
37505136 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 -CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
37505201 CT
65 CT
37505203 ATAGTATCCT
Statistics
Matches: 193, Mismatches: 13, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
141 120 0.62
148 1 0.01
150 7 0.04
151 2 0.01
152 1 0.01
153 1 0.01
155 61 0.32
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (147 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
TTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
TTATCACATTACATTCA
Found at i:37505134 original size:14 final size:14
Alignment explanation
Indices: 37505115--37505142 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37505105 ATGCATGTTC
37505115 ACATTCATCACATT
1 ACATTCATCACATT
37505129 ACATTCATCACATT
1 ACATTCATCACATT
37505143 GGCCATTCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (14 bp):
ACATTCATCACATT
Found at i:37505135 original size:61 final size:61
Alignment explanation
Indices: 37505069--37505189 Score: 242
Period size: 61 Copynumber: 2.0 Consensus size: 61
37505059 TGCATGTTCC
37505069 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTA
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTA
37505130 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
37505190 GGCCATTCGG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (61 bp):
CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTA
Found at i:37506529 original size:46 final size:45
Alignment explanation
Indices: 37506479--37506650 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
37506469 TGGTTGAGCA
37506479 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
37506525 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
37506571 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
37506617 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37506651 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:37506633 original size:92 final size:92
Alignment explanation
Indices: 37506476--37506645 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
37506466 GGATGGTTGA
* *
37506476 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37506541 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
37506568 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37506633 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37506646 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:37513966 original size:45 final size:45
Alignment explanation
Indices: 37513916--37514085 Score: 195
Period size: 45 Copynumber: 3.7 Consensus size: 45
37513906 GGTTGAGCAT
37513916 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
37513961 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCAT-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATG
*
37514008 CCGAACTCGTTGAGTTGAGTCCGA-TTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
37514052 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37514086 GGGCGGGTTA
Statistics
Matches: 103, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 2 0.02
45 53 0.51
46 14 0.14
47 25 0.24
48 4 0.04
49 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37514069 original size:92 final size:92
Alignment explanation
Indices: 37513912--37514080 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
37513902 GGATGGTTGA
* *
37513912 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGAACTCGTTGAGTT
37513977 GAGTCCGAGTTCGTGAAATGTAACTAG
66 GAGTCCGAGTTCGTGAAATGTAACTAG
*
37514004 GCATCCGAACTCGTTGAGTTGAGTCCGA-TTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAACTCGTTGAGT
37514068 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
37514081 ACTTAGGGCG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 19 0.26
92 54 0.74
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37517535 original size:43 final size:43
Alignment explanation
Indices: 37517487--37517572 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
37517477 GTTACATGAA
*
37517487 TCGCATCCATTATGAACTCAGACCTCTCAACAAGCTCAGATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAACAAGCTCAGATGC
* * *
37517530 TCGCATCCATAATGAACTCGGACCTCTCAACGAGCTCTGATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAACAAGCTCAGATGC
37517573 CATATATCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.28, C:0.33, G:0.16, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCAGACCTCTCAACAAGCTCAGATGC
Found at i:37525299 original size:40 final size:40
Alignment explanation
Indices: 37525244--37525465 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
37525234 TATTCGAATG
* *
37525244 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
37525284 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37525324 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
37525364 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37525404 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
37525444 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37525466 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 151 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37532037 original size:40 final size:40
Alignment explanation
Indices: 37531970--37532220 Score: 314
Period size: 40 Copynumber: 6.3 Consensus size: 40
37531960 ACCCAAGTAT
* *
37531970 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCGCAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
37532009 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
37532049 CTTCGGGTCTTAGCCCGGA-ATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
37532088 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
37532128 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
37532168 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
37532208 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
37532221 TCCAGTTATC
Statistics
Matches: 180, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 45 0.25
40 132 0.73
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:37532196 original size:80 final size:80
Alignment explanation
Indices: 37531970--37532220 Score: 393
Period size: 79 Copynumber: 3.2 Consensus size: 80
37531960 ACCCAAGTAT
* ** * * *
37531970 CTTCGGGAT-TTAG-CCGGATATAA-CAACTCGCGCAAATGCCCTCGGGTCTTAGCCCGGATATA
1 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
37532032 GCAACTCGCACAAATGC
64 GCAACTCGCACAAATGC
37532049 CTTCGGGTCTTAGCCCGGA-ATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
37532113 AACTCGCACAAATGC
66 AACTCGCACAAATGC
37532128 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
37532193 AACTCGCACAAATGC
66 AACTCGCACAAATGC
*
37532208 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
37532221 TCCAGTTATC
Statistics
Matches: 161, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
78 1 0.01
79 82 0.51
80 78 0.48
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
AACTCGCACAAATGC
Found at i:37540525 original size:40 final size:40
Alignment explanation
Indices: 37540458--37540714 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
37540448 ACCCAAGTAT
*
37540458 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
37540497 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
37540537 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
37540577 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
37540617 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
37540657 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
37540697 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
37540715 TTATCATCCG
Statistics
Matches: 187, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.07
40 168 0.90
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:37540591 original size:80 final size:80
Alignment explanation
Indices: 37540458--37540714 Score: 412
Period size: 80 Copynumber: 3.2 Consensus size: 80
37540448 ACCCAAGTAT
* * * * *
37540458 CTTCGGGAT-TTAG-CCGGATATAA-CAACTCGCACAAATGCCCTCGGGTCTTAGCCCGGATATA
1 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
37540520 GCAACTCGCACAAATGC
64 GCAACTCGCACAAATGC
37540537 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
37540602 AACTCGCACAAATGC
66 AACTCGCACAAATGC
37540617 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
37540682 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* *
37540697 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
37540715 TTATCATCCG
Statistics
Matches: 168, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
78 1 0.01
79 11 0.07
80 155 0.92
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
AACTCGCACAAATGC
Found at i:37544691 original size:38 final size:38
Alignment explanation
Indices: 37544640--37544726 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
37544630 GGGCAATGTA
37544640 TGTGTTTTGAATTGATGGAATGGAGAGGATGCTTTAAT
1 TGTGTTTTGAATTGATGGAATGGAGAGGATGCTTTAAT
37544678 TGTGTTTTGAATTGATGGAATGGAGAGGATGCTTTAAT
1 TGTGTTTTGAATTGATGGAATGGAGAGGATGCTTTAAT
*
37544716 TGTGTTATGAA
1 TGTGTTTTGAA
37544727 CAATTATATG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.26, C:0.02, G:0.31, T:0.40
Consensus pattern (38 bp):
TGTGTTTTGAATTGATGGAATGGAGAGGATGCTTTAAT
Found at i:37546157 original size:40 final size:40
Alignment explanation
Indices: 37546099--37546263 Score: 260
Period size: 40 Copynumber: 4.1 Consensus size: 40
37546089 TATTCGAATG
*
37546099 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37546139 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37546179 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
37546219 ATATCCGGGCTTAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
37546259 ATATC
1 ATATC
37546264 TGGCTAAATC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 114 0.98
41 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37547797 original size:40 final size:40
Alignment explanation
Indices: 37547745--37547857 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
37547735 TCACGGGCCG
* * *
37547745 GCTCACACAAGCTGACAATCAGGATGTAACTATACGGGCT
1 GCTCACACAAGCTGACAGTCAGGATGTAACTACAAGGGCT
* *
37547785 GCTCACATAAGCTGACGGTCAGGATGTAACTACAAGGGCT
1 GCTCACACAAGCTGACAGTCAGGATGTAACTACAAGGGCT
* * *
37547825 GCTCATACAATCTGACAGTCAGGAAGTAACTAC
1 GCTCACACAAGCTGACAGTCAGGATGTAACTAC
37547858 TCAGGCTTGT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.20
Consensus pattern (40 bp):
GCTCACACAAGCTGACAGTCAGGATGTAACTACAAGGGCT
Found at i:37557594 original size:27 final size:27
Alignment explanation
Indices: 37557563--37557740 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37557553 TAAATTGTAC
37557563 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37557590 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37557616 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37557644 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37557672 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37557699 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37557726 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37557741 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37557677 original size:82 final size:81
Alignment explanation
Indices: 37557564--37557719 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37557554 AAATTGTACA
* *
37557564 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37557628 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37557645 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37557710 TGCGAGTTGA
65 TGCGAATTGA
37557720 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37557731 original size:82 final size:81
Alignment explanation
Indices: 37557560--37557740 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37557550 GATTAAATTG
* *
37557560 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37557625 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37557641 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37557705 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37557723 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37557741 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37565629 original size:27 final size:27
Alignment explanation
Indices: 37565598--37565775 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37565588 TAAATTGTAC
37565598 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37565625 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37565651 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37565679 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37565707 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37565734 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37565761 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37565776 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37565712 original size:82 final size:81
Alignment explanation
Indices: 37565599--37565754 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37565589 AAATTGTACA
* *
37565599 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37565663 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37565680 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37565745 TGCGAGTTGA
65 TGCGAATTGA
37565755 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37565766 original size:82 final size:81
Alignment explanation
Indices: 37565595--37565775 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37565585 GATTAAATTG
* *
37565595 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37565660 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37565676 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37565740 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37565758 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37565776 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37571042 original size:32 final size:32
Alignment explanation
Indices: 37570963--37571043 Score: 110
Period size: 32 Copynumber: 2.5 Consensus size: 32
37570953 ACAGTCTCAA
**
37570963 TTGGGCCTAGCCCATCATAGAATCAATATCAG
1 TTGGGCCTAGCCCATTTTAGAATCAATATCAG
* *
37570995 TTTGGCCTCGCCCATTTTAGAAT-AAGTATCAG
1 TTGGGCCTAGCCCATTTTAGAATCAA-TATCAG
37571027 TTGGGCCTAGCCCATTT
1 TTGGGCCTAGCCCATTT
37571044 CAATATCAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.05
32 40 0.95
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (32 bp):
TTGGGCCTAGCCCATTTTAGAATCAATATCAG
Found at i:37585196 original size:39 final size:38
Alignment explanation
Indices: 37585114--37585213 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 38
37585104 AAAATCCTTG
* *
37585114 TTATAATTATTGTAATTATAATTTACTATCAAATATTA
1 TTATAATTATTGTAATTGTAATTTACTATCAAACATTA
* ** *
37585152 TTATAATTATTGTAATTGTATTTTTTTGGTCAAACATTA
1 TTATAATTATTGTAATTGTAATTTACT-ATCAAACATTA
**
37585191 TTATAATTACAGTAATTGTAATT
1 TTATAATTATTGTAATTGTAATT
37585214 ATTATATTTG
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
38 23 0.44
39 29 0.56
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (38 bp):
TTATAATTATTGTAATTGTAATTTACTATCAAACATTA
Found at i:37593611 original size:52 final size:51
Alignment explanation
Indices: 37593490--37593666 Score: 227
Period size: 51 Copynumber: 3.5 Consensus size: 51
37593480 CGGATACCTG
* * ** * *
37593490 GTGGCCTGCACATAGTACCACCCTTGTGGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCATAAA
37593541 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCATAAA
*
37593593 GTGGCCTTCATA-AGGTACCACACTTGTGACC-AAGCTATC-TCTTC-TCAAA
1 GTGGCCTTCACATA-GTACCACACTTGTGACCAAAGCTATCTTCTTCAT-AAA
*
37593642 GTGGCCTTCACATAGTACCCCACTT
1 GTGGCCTTCACATAGTACCACACTT
37593667 AAGTCACTAG
Statistics
Matches: 113, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
48 1 0.01
49 29 0.26
50 1 0.01
51 44 0.39
52 38 0.34
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCATAAA
Found at i:37596553 original size:47 final size:47
Alignment explanation
Indices: 37596427--37596727 Score: 422
Period size: 47 Copynumber: 6.4 Consensus size: 47
37596417 CCCTTCTGGA
* * * * *
37596427 CTTATCACATTTATACGCTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37596474 CTTATCTTCATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATC-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37596522 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37596569 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37596616 CTTATCACATATACACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37596663 CGTATCACATATATACACTTTCACATTCATAACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37596710 CTTATCACATATACACAC
1 CTTATCACATATATACAC
37596728 CTTGTACATC
Statistics
Matches: 226, Mismatches: 27, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
47 186 0.82
48 40 0.18
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37596627 original size:94 final size:94
Alignment explanation
Indices: 37596427--37596727 Score: 476
Period size: 94 Copynumber: 3.2 Consensus size: 94
37596417 CCCTTCTGGA
* * * * *
37596427 CTTATCACATTTATACGCTTTCACATCCATCACATTGGCCATTCGGCCTTATCTTCATATATACA
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC-ACATATATACA
* * *
37596492 CCTTCACATCCATCACATCGGCCATTAGGT
65 CTTTCACATTCATCACATCGGCCATTAGGC
* *
37596522 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
37596587 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
37596616 CTTATCACATATACACACCTTCACATTCATCACATTGGCCATTCGGCCGTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
37596681 TTTCACATTCATAACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
37596710 CTTATCACATATACACAC
1 CTTATCACATATACACAC
37596728 CTTGTACATC
Statistics
Matches: 193, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
94 144 0.75
95 49 0.25
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:37598771 original size:29 final size:27
Alignment explanation
Indices: 37598753--37598822 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37598743 ATATTAAGTC
37598753 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
37598780 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
37598808 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
37598823 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:37598816 original size:28 final size:28
Alignment explanation
Indices: 37598753--37598850 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37598743 ATATTAAGTC
*
37598753 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37598780 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37598808 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37598837 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37598851 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37606795 original size:29 final size:27
Alignment explanation
Indices: 37606777--37606846 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37606767 ATATTAAGTC
37606777 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
37606804 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
37606832 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
37606847 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:37606840 original size:28 final size:28
Alignment explanation
Indices: 37606777--37606874 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37606767 ATATTAAGTC
*
37606777 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37606804 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37606832 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37606861 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37606875 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37616049 original size:43 final size:47
Alignment explanation
Indices: 37615928--37616088 Score: 127
Period size: 48 Copynumber: 3.5 Consensus size: 47
37615918 CATTAAGGTT
* * *
37615928 ATATGTGATCCGATGTAAGACCATGTCTGGGACATGGATTTGGCATCG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACAT-GATTCGACATCG
* * ** * *
37615976 ATATATAATTTCGTATAAGACCATAG-CTGGG-C-T-A-TCGACATCG
1 ATATGTGATCCCATGTAAGACCAT-GTCTGGGACATGATTCGACATCG
* *
37616019 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGTGTTTG-CATCG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACAT-G-ATTCGACATCG
* *
37616067 ATCTGCGATCCCATGTAAGACC
1 ATATGTGATCCCATGTAAGACC
37616089 CTGTACGAGA
Statistics
Matches: 86, Mismatches: 19, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
42 1 0.01
43 30 0.35
44 2 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 47 0.55
49 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (47 bp):
ATATGTGATCCCATGTAAGACCATGTCTGGGACATGATTCGACATCG
Found at i:37630459 original size:39 final size:38
Alignment explanation
Indices: 37630416--37630573 Score: 107
Period size: 39 Copynumber: 4.1 Consensus size: 38
37630406 CGATATATGT
37630416 GCATGATTATTCGGA-TGATATCCGGGCTAAGTCCCGAAG
1 GCATG-TTATTC-GACTGATATCCGGGCTAAGTCCCGAAG
*
37630455 GCATGGTGCTAGT-GACT-ATATCCGGGCTAAGTCCCGAAG
1 GCAT-GT--TATTCGACTGATATCCGGGCTAAGTCCCGAAG
37630494 GCAGTTGTGCTATT-GACT-ATA-CCGGGCTAAGTCCCGAAG
1 GCA--TGT--TATTCGACTGATATCCGGGCTAAGTCCCGAAG
* * * *
37630533 GCGT-TTGTGCGAGTTGCTATATCCGGGCTAAGT-CCGAAG
1 GCATGTTATTCGA-CTG--ATATCCGGGCTAAGTCCCGAAG
37630572 GC
1 GC
37630574 TTTTGTGCTA
Statistics
Matches: 101, Mismatches: 6, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
34 2 0.02
35 2 0.02
36 2 0.02
37 1 0.01
39 63 0.62
40 27 0.27
41 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (38 bp):
GCATGTTATTCGACTGATATCCGGGCTAAGTCCCGAAG
Found at i:37630579 original size:39 final size:41
Alignment explanation
Indices: 37630433--37630650 Score: 287
Period size: 39 Copynumber: 5.6 Consensus size: 41
37630423 TATTCGGATG
*
37630433 ATATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
*
37630472 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
* *
37630512 ATA-CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
*
37630551 ATATCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
*
37630590 ATATCC-GGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTGACT
*
37630629 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37630651 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 10, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
38 10 0.06
39 120 0.75
40 31 0.19
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
Found at i:37630640 original size:117 final size:118
Alignment explanation
Indices: 37630433--37630650 Score: 320
Period size: 117 Copynumber: 1.9 Consensus size: 118
37630423 TATTCGGATG
*
37630433 ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAG
1 ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAG
*
37630498 TTGTGCTATTGACTATACCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCT
66 TTGTGCTATTGACTATACCGGGCTAAATCCCGAAGGCGTTTGTGCGAGTTGCT
* *
37630551 ATATCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAGTGACTATATCC-GGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGC-ATGGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
37630614 TTTGTG-TGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
65 GTTGTGCT-A-TTGACTATA-CCGGGCTAAATCCCGAAGG
37630651 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 5, Indels: 9
0.87 0.05 0.09
Matches are distributed among these distances:
116 1 0.01
117 51 0.56
118 39 0.43
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (118 bp):
ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAG
TTGTGCTATTGACTATACCGGGCTAAATCCCGAAGGCGTTTGTGCGAGTTGCT
Found at i:37638996 original size:40 final size:40
Alignment explanation
Indices: 37638905--37639125 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
37638895 TATTCGGATG
* * *
37638905 ATATCCGGGCTAAGTCCTGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
37638944 ATATCCGAGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* *
37638984 ATACCCGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
37639024 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
37639064 ATATCCGGGCTAAGACCCGAAGG-TGTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
*
37639104 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37639126 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 41 0.26
40 112 0.71
41 5 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:37639041 original size:80 final size:80
Alignment explanation
Indices: 37638909--37639125 Score: 296
Period size: 80 Copynumber: 2.7 Consensus size: 80
37638899 CGGATGATAT
* * * * *
37638909 CCGGGCTAAGTCCTGAAGGC-ATGGTGCTAG-TGACTATATCCGAGCTAAGTCCCGAAGGCAGTT
1 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTT
*
37638972 GTGCTATTGACTATAC
65 GTGCTAGTGACTATAC
**
37638988 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
*
37639053 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
37639068 CCGGGCTAAGACCCGAAGGTGTTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
37639126 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
79 34 0.27
80 88 0.71
81 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
TGCTAGTGACTATAC
Found at i:37641606 original size:40 final size:40
Alignment explanation
Indices: 37641562--37641706 Score: 272
Period size: 40 Copynumber: 3.6 Consensus size: 40
37641552 GCTACTAGCT
37641562 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
37641602 CAAATGCCTTCGGGACTTAGCCCGGTGATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
37641642 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
37641682 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
37641707 GTATCAATTC
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:37647929 original size:40 final size:40
Alignment explanation
Indices: 37647874--37648026 Score: 297
Period size: 40 Copynumber: 3.8 Consensus size: 40
37647864 CGAGTTCCAA
37647874 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
*
37647914 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTGATAGT
1 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
37647954 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
37647994 AACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 AACTCGCACAAATGCCTTCGGGACTTAGCCCGG
37648027 GTATCAATTC
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
Found at i:37650993 original size:27 final size:27
Alignment explanation
Indices: 37650958--37651135 Score: 234
Period size: 27 Copynumber: 6.7 Consensus size: 27
37650948 CTAAATTAAT
37650958 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* * *
37650985 AAATAACTATTTTACCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* * *
37651012 AAATGATTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
37651039 AAATGATTGTTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
37651066 AAATGA-T-TGTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
37651091 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
37651118 AGATGACTGTTTTGCCCT
1 AAATGACTATTTTGCCCT
37651136 ATGTGATGTA
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
25 22 0.16
26 2 0.01
27 111 0.82
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATATGGTA
Found at i:37651104 original size:52 final size:52
Alignment explanation
Indices: 37650969--37651128 Score: 230
Period size: 52 Copynumber: 3.0 Consensus size: 52
37650959 AATGACTATT
* * * *
37650969 TTGCCCTTATATGGTAAAATAACTATTTTACCCTTATGTGGTAAAATGATTG
1 TTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGATTG
* *
37651021 TTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCCTTATATGGTAAAATGATTG
1 --TTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGATTG
* *
37651075 TTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAGATGACTG
1 TTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGATTG
37651127 TT
1 TT
37651129 TTGCCCTATG
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 50 0.52
54 46 0.48
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (52 bp):
TTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGATTG
Found at i:37651108 original size:79 final size:81
Alignment explanation
Indices: 37650958--37651135 Score: 261
Period size: 79 Copynumber: 2.2 Consensus size: 81
37650948 CTAAATTAAT
* * * *
37650958 AAATGACTATTTTGCCCTTATATGGTAAAATAACTATTTTACCCTTATGTGGTAAAATGATTGTT
1 AAATGACTGTTTTGCCCTTATATGGTAAAATAACTATGTTACCCTTATGTGGTAAAATGACTATT
*
37651023 TTGCCCTTATGTGGTA
66 TTGCCCTTATATGGTA
* * *
37651039 AAATGATTGTTTTGCCCTTATATGGTAAAATGA-T-TGTTGCCCTTATGTGGTAAAATGACTATT
1 AAATGACTGTTTTGCCCTTATATGGTAAAATAACTATGTTACCCTTATGTGGTAAAATGACTATT
37651102 TTGCCCTTATATGGTA
66 TTGCCCTTATATGGTA
*
37651118 AGATGACTGTTTTGCCCT
1 AAATGACTGTTTTGCCCT
37651136 ATGTGATGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 56 0.64
80 1 0.01
81 30 0.34
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (81 bp):
AAATGACTGTTTTGCCCTTATATGGTAAAATAACTATGTTACCCTTATGTGGTAAAATGACTATT
TTGCCCTTATATGGTA
Found at i:37657434 original size:28 final size:28
Alignment explanation
Indices: 37657368--37657495 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
37657358 CATGAGATTG
* * **
37657368 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
37657397 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37657425 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
37657454 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
37657482 ACACTAACTGTGCG
1 GCACTAAGTGTGCG
37657496 GACTTACTAT
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 44 0.50
29 44 0.50
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37657457 original size:57 final size:57
Alignment explanation
Indices: 37657368--37657495 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 57
37657358 CATGAGATTG
*
37657368 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
37657425 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* *
37657482 ACACTAACTGTGCG
1 GCACTAAGTGTGCG
37657496 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:37665477 original size:28 final size:28
Alignment explanation
Indices: 37665411--37665538 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
37665401 CATGAGATTG
* * **
37665411 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
37665440 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37665468 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
37665497 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37665525 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
37665539 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37665500 original size:57 final size:57
Alignment explanation
Indices: 37665411--37665538 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
37665401 CATGAGATTG
*
37665411 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
37665468 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
37665525 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
37665539 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:37667217 original size:40 final size:40
Alignment explanation
Indices: 37667162--37667312 Score: 214
Period size: 40 Copynumber: 3.8 Consensus size: 40
37667152 CAGGATTTAT
*
37667162 CCGGATATAACAACTCGCACAAATGCCTTCGAGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGAGTCTTAGC
*
37667202 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGAGTCTTAGC
* * * * *
37667242 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACATAGC
1 CCGGATAT-AGCAACTCGCACAAATGCCTTCGAGTCTTAGC
*
37667282 CCGGATATAGCAACTCGCACGAATGCCTTCG
1 CCGGATATAGCAACTCGCACAAATGCCTTCG
37667313 GACTTAGTCC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 93 0.96
41 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGAGTCTTAGC
Found at i:37667295 original size:80 final size:80
Alignment explanation
Indices: 37667162--37667313 Score: 243
Period size: 80 Copynumber: 1.9 Consensus size: 80
37667152 CAGGATTTAT
* * *
37667162 CCGGATATAACAACTCGCACAAATGCCTTCGAGTCTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCGGATATAACAACTAGCACAAATGCCTTCGAGACATAGCCCGGATATAGCAACTCGCACAAATG
37667227 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
* *
37667242 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACATAGCCCGGATATAGCAACTCGCACGAAT
1 CCGGATATAA-CAACTAGCACAAATGCCTTCGAGACATAGCCCGGATATAGCAACTCGCACAAAT
37667306 GCCTTCGG
65 GCCTTCGG
37667314 ACTTAGTCCG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
80 65 0.98
81 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGAGACATAGCCCGGATATAGCAACTCGCACAAATG
CCTTCGGGTCTTAGC
Found at i:37675149 original size:40 final size:40
Alignment explanation
Indices: 37675082--37675298 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 40
37675072 ACCCAAGTAT
*
37675082 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
37675121 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
37675161 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
37675201 CTTCGGGTCTTAGCCCAGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
37675241 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
37675281 CTTCCGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
37675299 TTATCATCCG
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 141 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:37680681 original size:21 final size:21
Alignment explanation
Indices: 37680657--37680710 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
37680647 TGCAGGGCTC
**
37680657 ACACACTCGTGTG-GTCTAGAG
1 ACACACTCGTGTGACCCTA-AG
*
37680678 ACACGCTCGTGTGACCCTAAG
1 ACACACTCGTGTGACCCTAAG
37680699 ACACACTCGTGT
1 ACACACTCGTGT
37680711 TGTAGGCTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (21 bp):
ACACACTCGTGTGACCCTAAG
Found at i:37702608 original size:40 final size:40
Alignment explanation
Indices: 37702564--37702682 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
37702554 ATGTGCATTT
* *
37702564 AGGGGTGCCGAAGTACAAACAGGGGCATGTAACTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAATC
* *
37702604 AGGGGTACCGAAGTACAAATAGGGGCATTTAAGTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAATC
** * *
37702644 AGGGGTACTAAAGTACAAACATGGGCACGTAAGTGCAAT
1 AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAAT
37702683 AATTCAATAA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAATC
Found at i:37702647 original size:20 final size:20
Alignment explanation
Indices: 37702583--37702648 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
37702573 GAAGTACAAA
* *
37702583 CAGGGGCATGTAACTGCAAT
1 CAGGGGCATCTAAGTGCAAT
* * * *
37702603 CAGGGGTACCGAAGTACAAAT
1 CAGGGGCATCTAAGTGC-AAT
*
37702624 -AGGGGCATTTAAGTGCAAT
1 CAGGGGCATCTAAGTGCAAT
37702643 CAGGGG
1 CAGGGG
37702649 TACTAAAGTA
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.32, C:0.17, G:0.33, T:0.18
Consensus pattern (20 bp):
CAGGGGCATCTAAGTGCAAT
Found at i:37702657 original size:20 final size:20
Alignment explanation
Indices: 37702597--37702657 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
37702587 GGCATGTAAC
**
37702597 TGCAATCAGGGGTACCGAAG
1 TGCAATCAGGGGTACTAAAG
* * * *
37702617 TACAAAT-AGGGGCATTTAAG
1 TGC-AATCAGGGGTACTAAAG
37702637 TGCAATCAGGGGTACTAAAG
1 TGCAATCAGGGGTACTAAAG
37702657 T
1 T
37702658 ACAAACATGG
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 3 0.10
20 24 0.80
21 3 0.10
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (20 bp):
TGCAATCAGGGGTACTAAAG
Found at i:37705639 original size:27 final size:26
Alignment explanation
Indices: 37705595--37705646 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37705585 GGACTACCGA
* *
37705595 TTTACCCCTGGAGGGTAAAATGACTAT
1 TTTACCCCTCGAGCGT-AAATGACTAT
*
37705622 TTTACCCCTCGTGCGTAAATGACTA
1 TTTACCCCTCGAGCGTAAATGACTA
37705647 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
TTTACCCCTCGAGCGTAAATGACTAT
Found at i:37706348 original size:31 final size:32
Alignment explanation
Indices: 37706310--37706371 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
37706300 CTCGCTGCAA
* *
37706310 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
37706341 TCTGGTGGCCTAGCCACAATATATGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
37706372 ATGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:37717489 original size:20 final size:21
Alignment explanation
Indices: 37717461--37717503 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
37717451 ACCCCTGCAG
*
37717461 TTTTAAAAAATTTTAT-TGTT
1 TTTTAAAAAATTCTATATGTT
*
37717481 TTTTGAAAAATTCTATATGTT
1 TTTTAAAAAATTCTATATGTT
37717502 TT
1 TT
37717504 CGATTTAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (21 bp):
TTTTAAAAAATTCTATATGTT
Found at i:37725976 original size:24 final size:24
Alignment explanation
Indices: 37725914--37725977 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
37725904 TGGGAGGTTG
***
37725914 GAGTGATTTATGGAGTGTATCATA
1 GAGTGATTTATGGAGAAAATCATA
*
37725938 GAGAGATATTA-GGAGAAAATCA-A
1 GAGTGAT-TTATGGAGAAAATCATA
37725961 TGAGTGATTTATGGAGA
1 -GAGTGATTTATGGAGA
37725978 GATTTAAGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
23 4 0.12
24 25 0.78
25 3 0.09
ACGTcount: A:0.38, C:0.03, G:0.30, T:0.30
Consensus pattern (24 bp):
GAGTGATTTATGGAGAAAATCATA
Found at i:37729752 original size:38 final size:39
Alignment explanation
Indices: 37729706--37729793 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
37729696 GAAATCCTTG
* *
37729706 TTATAATTATTGTAATTATAA-TTTACGATCAAATATTA
1 TTATAATTATTCTAATTATAATTTTACGATCAAACATTA
* * *
37729744 TTATAATTATTCTAATTGTAATTTTTCGGTCAAACATTA
1 TTATAATTATTCTAATTATAATTTTACGATCAAACATTA
37729783 TTATAATTATT
1 TTATAATTATT
37729794 ATATTCAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 19 0.43
39 25 0.57
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.50
Consensus pattern (39 bp):
TTATAATTATTCTAATTATAATTTTACGATCAAACATTA
Found at i:37732530 original size:46 final size:46
Alignment explanation
Indices: 37732476--37732648 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
37732466 TGTTTGGGCA
*
37732476 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
37732522 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
37732569 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
37732615 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37732649 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:37732631 original size:93 final size:93
Alignment explanation
Indices: 37732472--37732643 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
37732462 AGGATGTTTG
* * *
37732472 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCAAACTCGTTGAG
37732537 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
37732565 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCAAACTCGTTGAG
37732630 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
37732644 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:37743279 original size:31 final size:31
Alignment explanation
Indices: 37743211--37743269 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
37743201 TTTAACGGTT
37743211 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
37743242 ACTGGGCCGAAGCCTTTTCATAAATCAT
1 ACTGGGCCGAAGCCTTTTCATAAATCAT
37743270 TTCTATGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:37743286 original size:31 final size:31
Alignment explanation
Indices: 37743211--37743289 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
37743201 TTTAACGGTT
*
37743211 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
* *
37743242 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
*
37743273 TA-TGGGCTAAAGCCTTT
1 -ACTGGGCCAAAGCCTTT
37743290 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (31 bp):
ACTGGGCCAAAGCCTTTTCATAAATCATATC
Found at i:37743360 original size:42 final size:42
Alignment explanation
Indices: 37743313--37743404 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
37743303 TGGCCCATAG
* ** *
37743313 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
37743355 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37743397 GCCCATTT
1 GCCCATTT
37743405 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:37743580 original size:26 final size:26
Alignment explanation
Indices: 37743550--37743699 Score: 216
Period size: 26 Copynumber: 5.8 Consensus size: 26
37743540 CTCTTTTAAT
37743550 AACTGGGGCA-AAGCCCTTTTCATGTA
1 AACTGGGGCATAAGCCCTTTTCA-GTA
*
37743576 AACTGGGGCA-AATCCCTTTTCATGTA
1 AACTGGGGCATAAGCCCTTTTCA-GTA
*
37743602 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
37743627 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
37743653 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
37743679 AATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
37743700 GCACTTCCTC
Statistics
Matches: 115, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 12 0.10
26 103 0.90
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:37743774 original size:20 final size:20
Alignment explanation
Indices: 37743749--37743815 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
37743739 TTATGAATAC
37743749 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
37743769 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
37743789 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
37743809 ATCATGT
1 ATCATGT
37743816 ATATCATATC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:37743879 original size:25 final size:25
Alignment explanation
Indices: 37743851--37743898 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
37743841 ATAATTAAAC
* * *
37743851 CCTAAGGGTATAATGGTCATTTTTA
1 CCTAAGGGCAAAATAGTCATTTTTA
*
37743876 CCTAGGGGCAAAATAGTCATTTT
1 CCTAAGGGCAAAATAGTCATTTT
37743899 CATACTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAAGGGCAAAATAGTCATTTTTA
Found at i:37744886 original size:27 final size:27
Alignment explanation
Indices: 37744856--37745137 Score: 165
Period size: 27 Copynumber: 10.4 Consensus size: 27
37744846 GTAATTTCAC
*
37744856 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * * *
37744883 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* ** *
37744910 AATCGAGGGTATAACAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
***
37744937 AATCGAGGGTACTTTGGTAATTTT-TA
1 AATCGAGGGTAAAATGGTAATTTTATA
*** * *
37744963 CAAGTCGAGGGTATTTTAGTAATTTTACA
1 -AA-TCGAGGGTAAAATGGTAATTTTATA
* *** * *
37744992 AATCAGGGGGTATTTTAGTAATTTTACA
1 AATC-GAGGGTAAAATGGTAATTTTATA
* *** * *
37745020 AA-CTAGGGGT-TTTTAGTAATTTTGTA
1 AATCGA-GGGTAAAATGGTAATTTTATA
* *
37745046 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
37745073 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * * * *
37745100 AATCAAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
37745127 AATCGGGGGTA
1 AATCGAGGGTA
37745138 CTTTGGTAAT
Statistics
Matches: 212, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
26 22 0.10
27 143 0.67
28 46 0.22
29 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.33
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:37744930 original size:54 final size:54
Alignment explanation
Indices: 37744856--37745137 Score: 194
Period size: 54 Copynumber: 5.2 Consensus size: 54
37744846 GTAATTTCAC
* * * *
37744856 AATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTATAATAGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTGTA
* * * *** *
37744910 AATCGAGGGTATAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTATAATAGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTGTA
** * * *** *
37744963 CAAGTCGAGGGTATTTTAGTAATTTTACAAATCAGGGGGTATTTTAGTAATT-T-TA
1 -AA-TCGAGGGTATAATAGTAATTTTATAAATCA-AGGGTAAAATGGTAATTCTGTA
* * ** * * * *
37745018 CAAACTAGGGGT-TTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 -AATCGA-GGGTATAATAGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTGTA
* * * * *
37745073 AATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTATAATAGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTGTA
*
37745127 AATCGGGGGTA
1 AATCGAGGGTA
37745138 CTTTGGTAAT
Statistics
Matches: 178, Mismatches: 43, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
53 18 0.10
54 110 0.62
55 35 0.20
56 15 0.08
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.33
Consensus pattern (54 bp):
AATCGAGGGTATAATAGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTGTA
Found at i:37744974 original size:28 final size:27
Alignment explanation
Indices: 37744644--37745056 Score: 198
Period size: 27 Copynumber: 15.2 Consensus size: 27
37744634 CTATAAACCA
** * *
37744644 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAATCG
* * * *
37744671 ATGGTATTTCT-CTAATTTTTAGAAAGTCA
1 AGGGTATTT-TAGTAA-TTTTACAAA-TCG
* *
37744700 AGGGTATTTCT-GTAATTTTATAAAT-T
1 AGGGTATTT-TAGTAATTTTACAAATCG
* *
37744726 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTAGTAATTTTACAAATCG
* * *
37744754 AGGGTA-TTTCGATAATTTCACAAA-CT
1 AGGGTATTTTAG-TAATTTTACAAATCG
* *
37744780 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTAGTAATTTTACAAATCG
* * * ** *
37744807 AGGGGTGTTTTGGTAATTCTACCCTATAG
1 A-GGGTATTTTAGTAATTTTA-CAAATCG
* *
37744836 -GGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
*** * ** *
37744861 AGGGTAAAATGGTAATTTTGTAAATCA
1 AGGGTATTTTAGTAATTTTACAAATCG
*** * **
37744888 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
*** * *
37744915 AGGGTATAACAGTAATTCTATAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
* * *
37744942 AGGGTACTTTGGTAATTTTTACAAGTCG
1 AGGGTATTTTAGTAA-TTTTACAAATCG
37744970 AGGGTATTTTAGTAATTTTACAAATCAG
1 AGGGTATTTTAGTAATTTTACAAATC-G
* *
37744998 GGGGTATTTTAGTAATTTTACAAA-CT
1 AGGGTATTTTAGTAATTTTACAAATCG
**
37745024 AGGGGT-TTTTAGTAATTTTGTAAATCG
1 A-GGGTATTTTAGTAATTTTACAAATCG
37745051 AGGGTA
1 AGGGTA
37745057 AAACGGTAAT
Statistics
Matches: 305, Mismatches: 62, Indels: 38
0.75 0.15 0.09
Matches are distributed among these distances:
25 3 0.01
26 41 0.13
27 176 0.58
28 70 0.23
29 15 0.05
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAATCG
Found at i:37744995 original size:55 final size:53
Alignment explanation
Indices: 37744925--37745056 Score: 149
Period size: 55 Copynumber: 2.4 Consensus size: 53
37744915 AGGGTATAAC
* * *
37744925 AGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAAGTCGA-GGGTATTTT
1 AGTAATTTTATAAATCGAGGGTACTTTAGTAA-TTTTACAA-ACGAGGGGT-TTTT
* * * *
37744980 AGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACTAGGGGTTTTT
1 AGTAATTTTATAAATC-GAGGGTACTTTAGTAATTTTACAAACGAGGGGTTTTT
*
37745034 AGTAATTTTGTAAATCGAGGGTA
1 AGTAATTTTATAAATCGAGGGTA
37745057 AAACGGTAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
53 6 0.09
54 20 0.31
55 26 0.40
56 13 0.20
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (53 bp):
AGTAATTTTATAAATCGAGGGTACTTTAGTAATTTTACAAACGAGGGGTTTTT
Found at i:37745040 original size:26 final size:28
Alignment explanation
Indices: 37744925--37745042 Score: 120
Period size: 28 Copynumber: 4.3 Consensus size: 28
37744915 AGGGTATAAC
* * * *
37744925 AGTAATTCTATAAATC-GAGGGTACTTT
1 AGTAATTTTACAAATCAGGGGGTATTTT
* * *
37744952 GGTAATTTTTACAAGTC-GAGGGTATTTT
1 AGTAA-TTTTACAAATCAGGGGGTATTTT
37744980 AGTAATTTTACAAATCAGGGGGTATTTT
1 AGTAATTTTACAAATCAGGGGGTATTTT
37745008 AGTAATTTTACAAA-CTA-GGGGT-TTTT
1 AGTAATTTTACAAATC-AGGGGGTATTTT
37745034 AGTAATTTT
1 AGTAATTTT
37745043 GTAAATCGAG
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
26 13 0.16
27 20 0.25
28 47 0.59
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (28 bp):
AGTAATTTTACAAATCAGGGGGTATTTT
Found at i:37745067 original size:190 final size:189
Alignment explanation
Indices: 37744783--37745149 Score: 490
Period size: 190 Copynumber: 1.9 Consensus size: 189
37744773 ACAAACTAGT
* * * **
37744783 GGTATTTTGGTAATTTTACAAACTAGGGGTGTTTTGGTAATTCTACCCTATAGGGGTATTTCAGT
1 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAGTAATTCTACCAAATAGGGGTATTTCAGT
* * * *
37744848 AATTTCACAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAAT
66 AATTTCACAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAAT
* *
37744913 CGAGGGTATAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAAGTCGAG
131 CAAGGGTAGAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAAGTCGAG
* *
37744972 GGTATTTTAGTAATTTTACAAA-TCAGGGGGTATTTTAGTAATTTTA-CAAACTAGGGGT-TTTT
1 GGTATTTTAGTAATTTTACAAACT-A-GGGGTATTTTAGTAATTCTACCAAA-TAGGGGTATTTC
* * *
37745034 AGTAATTTTGTA-AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
63 AGTAA-TTT-CACAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTA
* * *
37745098 TAAATCAAGGGTAGAACGGTAATTCTGTAAATCGGGGGTACTTTGGTAATTT
126 TAAATCAAGGGTAGAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTT
37745150 GGTAAACTAA
Statistics
Matches: 154, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
188 1 0.01
189 32 0.21
190 120 0.78
191 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.36
Consensus pattern (189 bp):
GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAGTAATTCTACCAAATAGGGGTATTTCAGT
AATTTCACAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAAT
CAAGGGTAGAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAAGTCGAG
Found at i:37745145 original size:27 final size:27
Alignment explanation
Indices: 37744617--37745148 Score: 161
Period size: 27 Copynumber: 19.6 Consensus size: 27
37744607 TCATCCTACA
* * * *
37744617 AGGGTGTTTTGGTAAATCTATAAACCA
1 AGGGTATTTTGGTAATTCTATAAATCG
* * * * *
37744644 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTCTATAAATCG
* * * * *
37744671 ATGGTATTTCT-CTAATTTTTAGAAAGTCA
1 AGGGTATTT-TGGTAA-TTCTATAAA-TCG
* *
37744700 AGGGTATTTCT-GTAATTTTATAAAT-T
1 AGGGTATTT-TGGTAATTCTATAAATCG
* * *
37744726 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTCTATAAATCG
* * * *
37744754 AGGGTATTTCGATAATT-TCACAAA-CT
1 AGGGTATTTTGGTAATTCT-ATAAATCG
* * *
37744780 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTCTATAAATCG
* *** *
37744807 AGGGGTGTTTTGGTAATTCTACCCTATAG
1 A-GGGTATTTTGGTAATTCTA-TAAATCG
** *
37744836 -GGGTATTTCAGTAATT-TCA-CAATCG
1 AGGGTATTTTGGTAATTCT-ATAAATCG
*** * * *
37744861 AGGGTAAAATGGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTCTATAAATCG
*** * *
37744888 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
****
37744915 AGGGTATAACAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
* *
37744942 AGGGTACTTTGGTAATT-TTTACAAGTCG
1 AGGGTATTTTGGTAATTCTATA-AA-TCG
* * *
37744970 AGGGTATTTTAGTAATTTTACAAATCAG
1 AGGGTATTTTGGTAATTCTATAAATC-G
* * * * *
37744998 GGGGTATTTTAGTAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTCTATAAATCG
* * *
37745024 AGGGGT-TTTTAGTAATTTTGTAAATCG
1 A-GGGTATTTTGGTAATTCTATAAATCG
****
37745051 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
*** *
37745078 AGGGTAAAATGGTAATTCTATAAATCA
1 AGGGTATTTTGGTAATTCTATAAATCG
**** *
37745105 AGGGTAGAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
* *
37745132 GGGGTACTTTGGTAATT
1 AGGGTATTTTGGTAATT
37745149 TGGTAAACTA
Statistics
Matches: 401, Mismatches: 81, Indels: 46
0.76 0.15 0.09
Matches are distributed among these distances:
25 4 0.01
26 40 0.10
27 275 0.69
28 65 0.16
29 17 0.04
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTCTATAAATCG
Found at i:37759030 original size:28 final size:27
Alignment explanation
Indices: 37758984--37759036 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
37758974 ACAGGGGCTT
*
37758984 TCACATGGCCTGACACGCCAATGTCCC
1 TCACACGGCCTGACACGCCAATGTCCC
*
37759011 TCACACGGCCATGACACGCCCATGTC
1 TCACACGGCC-TGACACGCCAATGTC
37759037 TAAAAACCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.23, C:0.42, G:0.19, T:0.17
Consensus pattern (27 bp):
TCACACGGCCTGACACGCCAATGTCCC
Found at i:37760139 original size:49 final size:48
Alignment explanation
Indices: 37759983--37760156 Score: 156
Period size: 49 Copynumber: 3.6 Consensus size: 48
37759973 GATAAAATGC
* * * *
37759983 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTAGCA-C-ATTAAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTA-TCAGGT
* * * * *
37760031 CGATGCCGTGTCCCAGACAGGTCTTACACTGACTTTAATATATCGAGG-
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AGGT
* * * *
37760079 CTAATGTCATGTCCCAGACAGTTCTTACACTGGCTCTCATCTATCAGTGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG-GT
*
37760129 CGATGCCATGTCCCAAACAGGTCTTACA
1 CGATGCCATGTCCCAGACAGGTCTTACA
37760157 TTAACACACA
Statistics
Matches: 99, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
47 15 0.15
48 21 0.21
49 62 0.63
50 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAGGT
Found at i:37762725 original size:49 final size:48
Alignment explanation
Indices: 37762571--37762927 Score: 158
Period size: 46 Copynumber: 7.6 Consensus size: 48
37762561 AAGATGCCGG
* * *
37762571 TGTCATGTCCCAGACATGGTCTTACACTGGCTAACACATC-A-A-AGTCGA
1 TGTCATGTCCCAGACA-GGTCTTACACTGG--ATCTCATCTATAGGGTCGA
* * * *
37762619 TGCCATGTCCCAGACAGGTCTTACACT-GACTTTCATATATCGAGGTC-A
1 TGTCATGTCCCAGACAGGTCTTACACTGGA-TCTCATCTATAG-GGTCGA
37762667 T-TGCTATGTCCCAGACAGGTCTTACACTGGATCTCATCTATAGGTGTCGA
1 TGT-C-ATGTCCCAGACAGGTCTTACACTGGATCTCATCTATAGG-GTCGA
** * * * * *
37762717 TGTCATGTCCCAGACAAATCTTACACT-GA-CACA-CAACAAGCT-GA
1 TGTCATGTCCCAGACAGGTCTTACACTGGATCTCATCTATAGGGTCGA
* * * * * * * * *
37762761 CG-CTATGTCCCAAACAGGTCTTACACTAGCT-TGTATATCTCGAGGCCGA
1 TGTC-ATGTCCCAGACAGGTCTTACACTGGATCT-CATCTATAG-GGTCGA
* * * * * *
37762810 TG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCA-A-TGACGA
1 TGTCATGTCCCAGACAGGTCTTACACTGGATCTCATCT-ATAGGGTCGA
* * * *
37762856 TG-CATGTCCCAGACATGTCTTACACTGGCTCTCAT-AAT-GTGGCCGA
1 TGTCATGTCCCAGACAGGTCTTACACTGGATCTCATCTATAG-GGTCGA
*
37762902 TG-CATGTCCCAGACATGTCTTACACT
1 TGTCATGTCCCAGACAGGTCTTACACT
37762928 AGCACACATC
Statistics
Matches: 238, Mismatches: 48, Indels: 48
0.71 0.14 0.14
Matches are distributed among these distances:
43 1 0.00
44 25 0.11
45 5 0.02
46 74 0.31
47 14 0.06
48 49 0.21
49 64 0.27
50 5 0.02
51 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
TGTCATGTCCCAGACAGGTCTTACACTGGATCTCATCTATAGGGTCGA
Found at i:37762830 original size:48 final size:47
Alignment explanation
Indices: 37762765--37762930 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 47
37762755 AGCTGACGCT
* *
37762765 ATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCCGATGC
* ** * * *
37762813 ATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGACGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATGC
* * * *
37762859 ATGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCCGATGC
37762905 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
37762931 ACACATCTCA
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 70 0.72
47 2 0.02
48 25 0.26
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATGC
Done.