Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 112 of 343
Found at i:37766905 original size:51 final size:51
Alignment explanation
Indices: 37766820--37767013 Score: 284
Period size: 51 Copynumber: 3.8 Consensus size: 51
37766810 ACACGATGGC
* *
37766820 CTTT-ACATAGTACCACCCTTGTAG-CCAAATCTATTTTATTCACAAAGTGG
1 CTTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAGTGG
37766870 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
1 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
* * * * *
37766921 CATTCACATAGTACCACACTTTTATCCAAAGCCATTATATTCACAAAGTGG
1 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
* *
37766972 CCTTCACATAGTACCACACTTGTGTCCAAAGTTATTTTATTC
1 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
37767014 CTAAGGTTCA
Statistics
Matches: 129, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
50 5 0.04
51 124 0.96
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (51 bp):
CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
Found at i:37767081 original size:28 final size:27
Alignment explanation
Indices: 37767037--37767128 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 27
37767027 GGGAAATTTC
* *
37767037 TCACTTAGCACCGTGCCATGGACTTAAT
1 TCACTTAGCA-CATGCCATGGACTTATT
37767065 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
37767093 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
37767117 TCACTTAGCACA
1 TCACTTAGCACA
37767129 ATGTCATATT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
24 22 0.39
25 1 0.02
27 2 0.04
28 32 0.56
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:37767114 original size:24 final size:26
Alignment explanation
Indices: 37767050--37767126 Score: 104
Period size: 24 Copynumber: 3.0 Consensus size: 26
37767040 CTTAGCACCG
*
37767050 TGCCATGGACTTAATTCACTTAGCACAT
1 TGCCATGGACTTATTTCACTTAG--CAT
37767078 TGCCATGGACTTATTTCACTTAG-A-
1 TGCCATGGACTTATTTCACTTAGCAT
*
37767102 TGCCATGGTCTTATTTCACTTAGCA
1 TGCCATGGACTTATTTCACTTAGCA
37767127 CAATGTCATA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
24 22 0.48
25 2 0.04
28 22 0.48
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (26 bp):
TGCCATGGACTTATTTCACTTAGCAT
Found at i:37771525 original size:41 final size:44
Alignment explanation
Indices: 37771462--37771585 Score: 155
Period size: 41 Copynumber: 2.9 Consensus size: 44
37771452 ATGCTACCTC
* *
37771462 ATATCGATGCCACTGTCCCAGACATGGTCTTACACGAATCA-A-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAACCATAT
* ** *
37771504 ATA-CGATGCCGATGTTTCAGACATGGTCTTACACGTACCCATAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AACCATAT
*
37771548 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAA
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
37771586 AACACATATC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 28 0.42
42 6 0.09
43 1 0.01
44 4 0.06
45 28 0.42
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAACCATAT
Found at i:37771576 original size:45 final size:43
Alignment explanation
Indices: 37771438--37771583 Score: 154
Period size: 41 Copynumber: 3.4 Consensus size: 43
37771428 CCAACATCCT
* * * *
37771438 AGACGTGGTCTTACATGCTACC-TCATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACG-TACCATAATATCGATGCCAATGTCCC
* * * **
37771481 AGACATGGTCTTACACGAATCA-AATA-CGATGCCGATGTTTC
1 AGACATGGTCTTACACGTACCATAATATCGATGCCAATGTCCC
37771522 AGACATGGTCTTACACGTACCCATATATATCGATGCCAATGTCCC
1 AGACATGGTCTTACACGTA-CCATA-ATATCGATGCCAATGTCCC
*
37771567 AGACGTGGTCTTACACG
1 AGACATGGTCTTACACG
37771584 AAAACACATA
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
41 29 0.35
42 7 0.08
43 16 0.19
44 3 0.04
45 28 0.34
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACACGTACCATAATATCGATGCCAATGTCCC
Found at i:37774640 original size:55 final size:55
Alignment explanation
Indices: 37774478--37774643 Score: 314
Period size: 55 Copynumber: 3.0 Consensus size: 55
37774468 ATCACATTCG
*
37774478 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATATACATATAGC
1 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATATACATATGGC
37774533 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATATACATATGGC
1 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATATACATATGGC
*
37774588 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATACACATATGGC
1 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATATACATATGGC
37774643 T
1 T
37774644 TAACATTCAT
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 109 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (55 bp):
TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATATACATATGGC
Found at i:37777824 original size:39 final size:39
Alignment explanation
Indices: 37777754--37778010 Score: 381
Period size: 39 Copynumber: 6.5 Consensus size: 39
37777744 ACAAAGCATG
* * * *
37777754 CGGGACTTTAAGCCCGGATATAATACTAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
37777794 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
37777834 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
37777873 CGGGACTTAGCTCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
37777912 CGGGACTTAGCCCGGATATAACACCAGCACGAATACCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
37777951 TGGGACTTACCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
37777990 CGGGACTTAGGCAGGATATAA
1 CGGGACTTAGCCCGGATATAA
37778011 TTCTCCATTA
Statistics
Matches: 200, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 179 0.89
40 21 0.10
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:37780828 original size:51 final size:51
Alignment explanation
Indices: 37780751--37780898 Score: 269
Period size: 51 Copynumber: 2.9 Consensus size: 51
37780741 CAGATACATG
* *
37780751 GTGGCCTTCACATAGTACCACCCTTGTGGCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
37780802 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
37780853 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGTTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
37780899 CTAAGGTTCA
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 94 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:37780983 original size:28 final size:28
Alignment explanation
Indices: 37780922--37780984 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
37780912 GGGAAATTTC
*
37780922 TCACTAAGCACCATGCCATGGACTTATT
1 TCACTTAGCACCATGCCATGGACTTATT
37780950 TCACTTAGCA-CATTGCCATGGACTTATT
1 TCACTTAGCACCA-TGCCATGGACTTATT
37780978 TCACTTA
1 TCACTTA
37780985 ATGTAATGCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (28 bp):
TCACTTAGCACCATGCCATGGACTTATT
Found at i:37784363 original size:23 final size:23
Alignment explanation
Indices: 37784327--37784370 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
37784317 CTTCCACCTG
37784327 AAGTTAGAGAGGCTCAAGAAAAA
1 AAGTTAGAGAGGCTCAAGAAAAA
*
37784350 AAGTTAG-GAGGGCTTAAGAAA
1 AAGTTAGAGA-GGCTCAAGAAA
37784371 CAACAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.48, C:0.07, G:0.30, T:0.16
Consensus pattern (23 bp):
AAGTTAGAGAGGCTCAAGAAAAA
Found at i:37787611 original size:31 final size:31
Alignment explanation
Indices: 37787576--37787638 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
37787566 TTTAGTTGAA
*
37787576 ATATTACATAATTATATACAATTTGAACACT
1 ATATTACATAATTAAATACAATTTGAACACT
37787607 ATATTACATAATTAAATACAATTTGAACACT
1 ATATTACATAATTAAATACAATTTGAACACT
37787638 A
1 A
37787639 AGTCTTAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.37
Consensus pattern (31 bp):
ATATTACATAATTAAATACAATTTGAACACT
Found at i:37790555 original size:6 final size:6
Alignment explanation
Indices: 37790546--37790619 Score: 103
Period size: 6 Copynumber: 12.3 Consensus size: 6
37790536 TAGTAGTAGG
* * *
37790546 AGGAGT AGGAGT AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGT
1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
* *
37790594 AAGAGC AGGAGC AGGAGC AAGAGC AG
1 AGGAGC AGGAGC AGGAGC AGGAGC AG
37790620 CAAGAGTAGG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.47, T:0.04
Consensus pattern (6 bp):
AGGAGC
Found at i:37790660 original size:9 final size:9
Alignment explanation
Indices: 37790648--37790769 Score: 73
Period size: 9 Copynumber: 12.9 Consensus size: 9
37790638 TAGCAGCAGT
37790648 AGTAGTAGC
1 AGTAGTAGC
* *
37790657 AGTAGCAAC
1 AGTAGTAGC
*
37790666 AATAGTAGC
1 AGTAGTAGC
*
37790675 CGTAGTAGC
1 AGTAGTAGC
* *
37790684 AGCAATAGC
1 AGTAGTAGC
37790693 AAGAGTAGTAGC
1 ---AGTAGTAGC
*
37790705 TGTAGTAGC
1 AGTAGTAGC
37790714 AGTAGTAGC
1 AGTAGTAGC
* *
37790723 AGTAGCAAC
1 AGTAGTAGC
*
37790732 AGTAGCAGTTGC
1 AGT---AGTAGC
*
37790744 CGTAGTAGC
1 AGTAGTAGC
* *
37790753 AATAGTAAC
1 AGTAGTAGC
37790762 AGTAGTAG
1 AGTAGTAG
37790770 TAGCAGCAGT
Statistics
Matches: 81, Mismatches: 26, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
9 69 0.85
12 12 0.15
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (9 bp):
AGTAGTAGC
Found at i:37790682 original size:30 final size:30
Alignment explanation
Indices: 37790646--37790723 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
37790636 AGTAGCAGCA
*
37790646 GTAGTAGTAGCAGTAGCAACAATAGTAGCC
1 GTAGTAGCAGCAGTAGCAACAATAGTAGCC
* * * *
37790676 GTAGTAGCAGCAATAGCAAGAGTAGTAGCT
1 GTAGTAGCAGCAGTAGCAACAATAGTAGCC
*
37790706 GTAGTAGCAGTAGTAGCA
1 GTAGTAGCAGCAGTAGCA
37790724 GTAGCAACAG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (30 bp):
GTAGTAGCAGCAGTAGCAACAATAGTAGCC
Found at i:37790726 original size:15 final size:15
Alignment explanation
Indices: 37790708--37790783 Score: 62
Period size: 15 Copynumber: 4.9 Consensus size: 15
37790698 TAGTAGCTGT
37790708 AGTAGCAGTAGTAGC
1 AGTAGCAGTAGTAGC
**
37790723 AGTAGCAACAGTAGC
1 AGTAGCAGTAGTAGC
* *
37790738 AGTTGCCGTAGTAGC
1 AGTAGCAGTAGTAGC
* *
37790753 AATAGTAACAGTAGTAGT
1 ---AGTAGCAGTAGTAGC
*
37790771 AGCAGCAGTAGTA
1 AGTAGCAGTAGTA
37790784 ATAGTACGAA
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
15 35 0.76
18 11 0.24
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (15 bp):
AGTAGCAGTAGTAGC
Found at i:37790772 original size:24 final size:24
Alignment explanation
Indices: 37790696--37790789 Score: 80
Period size: 24 Copynumber: 3.9 Consensus size: 24
37790686 CAATAGCAAG
** *
37790696 AGTAGTAGCTGTAGTAGCAGTAGT
1 AGTAGTAGCAATAGTAACAGTAGT
* * * * *
37790720 AGCAGTAGCAACAGTAGCAGTTGC
1 AGTAGTAGCAATAGTAACAGTAGT
*
37790744 CGTAGTAGCAATAGTAACAGTAGT
1 AGTAGTAGCAATAGTAACAGTAGT
* * *
37790768 AGTAGCAGCAGTAGTAATAGTA
1 AGTAGTAGCAATAGTAACAGTA
37790790 CGAAGCCTGG
Statistics
Matches: 54, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (24 bp):
AGTAGTAGCAATAGTAACAGTAGT
Found at i:37790781 original size:30 final size:30
Alignment explanation
Indices: 37790676--37790789 Score: 104
Period size: 30 Copynumber: 3.8 Consensus size: 30
37790666 AATAGTAGCC
* * **
37790676 GTAGTAGCAGCAATAGCAAGAGTAGTAGCT-
1 GTAGTAGCAGCAGTAGCAATAGTAACAG-TA
* * *
37790706 GTAGTAGCAGTAGTAGCAGTAGCAACAGTA
1 GTAGTAGCAGCAGTAGCAATAGTAACAGTA
* * * *
37790736 GCAGTTGCCGTAGTAGCAATAGTAACAGTA
1 GTAGTAGCAGCAGTAGCAATAGTAACAGTA
*
37790766 GTAGTAGCAGCAGTAGTAATAGTA
1 GTAGTAGCAGCAGTAGCAATAGTA
37790790 CGAAGCCTGG
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
29 1 0.02
30 65 0.98
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.22
Consensus pattern (30 bp):
GTAGTAGCAGCAGTAGCAATAGTAACAGTA
Found at i:37790788 original size:21 final size:21
Alignment explanation
Indices: 37790636--37790789 Score: 76
Period size: 21 Copynumber: 7.0 Consensus size: 21
37790626 TAGGAATAAG
*
37790636 AGTAGCAGCAGTAGTAGTAGC
1 AGTAGCAGCAGTAGTAGTAGT
* * **
37790657 AGTAGCAACAATAGTAGCCGT
1 AGTAGCAGCAGTAGTAGTAGT
* *
37790678 AGTAGCAGCAATAGCAAG-AGT
1 AGTAGCAGCAGTAG-TAGTAGT
* * *
37790699 AGTAGCTGTAGTAGCAGTAGTAGC
1 AGTAGC---AGCAGTAGTAGTAGT
* * *
37790723 AGTAGCAACAGTAGCAGTTGCCGT
1 AGTAGCAGCAGTAGTAG-T--AGT
** **
37790747 AGTAGCAATAGTAACAGTAGT
1 AGTAGCAGCAGTAGTAGTAGT
*
37790768 AGTAGCAGCAGTAGTAATAGT
1 AGTAGCAGCAGTAGTAGTAGT
37790789 A
1 A
37790790 CGAAGCCTGG
Statistics
Matches: 98, Mismatches: 27, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
21 63 0.64
22 3 0.03
23 3 0.03
24 29 0.30
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (21 bp):
AGTAGCAGCAGTAGTAGTAGT
Found at i:37791132 original size:23 final size:23
Alignment explanation
Indices: 37791105--37791158 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
37791095 ATTTGACATA
37791105 CATAACTCATACATTTATGCATT
1 CATAACTCATACATTTATGCATT
37791128 CATAACTCATACATTTATGCATT
1 CATAACTCATACATTTATGCATT
37791151 CAT-ACTCA
1 CATAACTCA
37791159 AATACCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 5 0.16
23 26 0.84
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (23 bp):
CATAACTCATACATTTATGCATT
Found at i:37794478 original size:93 final size:93
Alignment explanation
Indices: 37794350--37794521 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
37794340 GCCCATAAGT
* * *
37794350 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAATTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
37794415 CGAGC-TCGGATGCCTAGTTACATCTCTC
66 CGA-CTTCGGATGCCTAGTTACATCTCTC
* * *
37794443 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
37794508 CGACTTCGGATGCC
66 CGACTTCGGATGCC
37794522 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGACTTCGGATGCCTAGTTACATCTCTC
Found at i:37794517 original size:46 final size:46
Alignment explanation
Indices: 37794342--37794510 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
37794332 TGTAACCCGC
* *
37794342 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
37794388 CCATAAGTGAACTCAGACTCAATTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
37794434 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
37794481 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
37794511 CTTCGGATGC
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 60 0.61
47 29 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:37801469 original size:23 final size:23
Alignment explanation
Indices: 37801443--37801491 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
37801433 CAATCTATCC
37801443 AAAGTCAGCAAAAGTGATCTACA
1 AAAGTCAGCAAAAGTGATCTACA
37801466 AAAGTCAGCAAAAGTGATCTACA
1 AAAGTCAGCAAAAGTGATCTACA
37801489 AAA
1 AAA
37801492 TGACACATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16
Consensus pattern (23 bp):
AAAGTCAGCAAAAGTGATCTACA
Found at i:37801670 original size:39 final size:39
Alignment explanation
Indices: 37801627--37801748 Score: 136
Period size: 39 Copynumber: 3.1 Consensus size: 39
37801617 TAAGTTCAAA
* * **
37801627 TCAGGGGTACCAAAGTACTACAGGGGCACATATGTGCAT
1 TCAGGGGTACCGAAGTACAACAGGGGCATGTATGTGCAT
* * * * *
37801666 TCAGGGATTCTGAAGTACAACAAGGGCTTGTATGTGCAT
1 TCAGGGGTACCGAAGTACAACAGGGGCATGTATGTGCAT
* * *
37801705 TCAAGGGTACCGAAGTACAATAGGGGCATGTATGTGCGT
1 TCAGGGGTACCGAAGTACAACAGGGGCATGTATGTGCAT
37801744 TCAGG
1 TCAGG
37801749 TATAATTACA
Statistics
Matches: 65, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (39 bp):
TCAGGGGTACCGAAGTACAACAGGGGCATGTATGTGCAT
Found at i:37804639 original size:27 final size:27
Alignment explanation
Indices: 37804585--37804695 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
37804575 AGCATTGCTG
* *
37804585 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
37804611 CCAGAACATATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
37804638 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
37804665 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
37804692 CCAG
1 CCAG
37804696 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 14 0.19
27 60 0.80
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:37806129 original size:24 final size:24
Alignment explanation
Indices: 37806094--37806170 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
37806084 CCAACACTGT
* *
37806094 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
37806118 CCTCCCTTATCATCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
37806142 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
37806166 TCTCC
1 TCTCC
37806171 TGACAGACTT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.23, C:0.43, G:0.01, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:37812519 original size:27 final size:26
Alignment explanation
Indices: 37812443--37812575 Score: 149
Period size: 27 Copynumber: 5.0 Consensus size: 26
37812433 TTGCTTCCAA
* *
37812443 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
* *
37812469 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
*
37812495 AATAGATAATTGTGGCAGAGCCACCAG
1 AACAGATAA-TGTGGCAGAGCCACCAG
*
37812522 AACAGATATATGTGGCAAAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
** * *
37812549 ATTAGATAAATGTCGCATAGCCACCAG
1 AACAGAT-AATGTGGCAGAGCCACCAG
37812576 GACGCTTCCT
Statistics
Matches: 95, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 34 0.36
27 59 0.62
28 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAG
Found at i:37814420 original size:28 final size:27
Alignment explanation
Indices: 37814389--37814459 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 27
37814379 ATTACACTAT
37814389 ACTGATACTGTATTGGGC-ATAGGCCCAC
1 ACTG-TACTGTATTGGGCTA-AGGCCCAC
* * *
37814417 ACTGTTACTGTATAGGGCTAAGGTCCAG
1 ACTG-TACTGTATTGGGCTAAGGCCCAC
37814445 ACTGTACTGATATTG
1 ACTGTACTG-TATTG
37814460 AATAGGGCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 5 0.14
28 30 0.83
29 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (27 bp):
ACTGTACTGTATTGGGCTAAGGCCCAC
Found at i:37818919 original size:34 final size:34
Alignment explanation
Indices: 37818874--37818956 Score: 121
Period size: 34 Copynumber: 2.4 Consensus size: 34
37818864 GAAACAGCTA
* * *
37818874 GGGCCTTAGCCCTTTTCAGTAACTGTAGCAATCT
1 GGGCCTAAGCCCATTTCAGTAACAGTAGCAATCT
* *
37818908 GGGCCTGAGCCCATTTCAGTAACAGTAGCAGTCT
1 GGGCCTAAGCCCATTTCAGTAACAGTAGCAATCT
37818942 GGGCCTAAGCCCATT
1 GGGCCTAAGCCCATT
37818957 AACATATCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGTAACAGTAGCAATCT
Found at i:37848507 original size:46 final size:44
Alignment explanation
Indices: 37848420--37848583 Score: 134
Period size: 46 Copynumber: 3.5 Consensus size: 44
37848410 ACACTATGAA
* *
37848420 AGCCTATGTAAGACCATGTTTGGGACATGGCATCGCATCGAGACAAGT
1 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGCATCGAGAC--GT
** * * *
37848468 -GTTAGTGTAAGACATGTCCGGGACATGCATCAGCCTCGAGACGT
1 AGCCAATGTAAGACATGTCTGGGACATGCATC-GCATCGAGACGT
*
37848512 AAGCCAATGTAAGACATGTCTGGGACATGCATCGGC-TACGAGATGAT
1 -AGCCAATGTAAGACATGTCTGGGACATGCATC-GCAT-CGAGACG-T
* *
37848559 AGTCAATGTAAGACCATATCTGGGA
1 AGCCAATGTAAGA-CATGTCTGGGA
37848584 TATGGCATTG
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
44 2 0.02
45 6 0.06
46 68 0.72
47 19 0.20
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (44 bp):
AGCCAATGTAAGACATGTCTGGGACATGCATCGCATCGAGACGT
Found at i:37849672 original size:13 final size:13
Alignment explanation
Indices: 37849654--37849689 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
37849644 AATTAATTCC
*
37849654 ACACGGGTGTCAG
1 ACACGGGCGTCAG
37849667 ACACGGGCGTCAG
1 ACACGGGCGTCAG
37849680 ACACGGGCGT
1 ACACGGGCGT
37849690 ATCCCTGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.39, T:0.11
Consensus pattern (13 bp):
ACACGGGCGTCAG
Found at i:37853781 original size:47 final size:45
Alignment explanation
Indices: 37853706--37854026 Score: 174
Period size: 47 Copynumber: 6.8 Consensus size: 45
37853696 TGGGTTATGT
37853706 GAGA-GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA
1 GAGAGGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGA
* * *
37853751 GACGAGGGCTAGTGTAAGA-CGTGTCTGGGACATGCATCAGCCATATTA
1 GA-GA-GGCCAGTGTAAGACCATGTCTGGGACATGCATCAG-CAT-TGA
* * ** *
37853799 TGATA-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGA
1 -GAGAGGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGA
* * * * *
37853845 TATGAGTGCCAGTTTAAGA-CGTGTCTGGGACATGCATCGACCTAAATGA
1 GA-GAG-GCCAGTGTAAGACCATGTCTGGGACATGCATC-AGC--ATTGA
* * * *
37853894 TG-GTA-GCCAGTGTAAGA-CATGTGTGGGACATGCATAAACACTTATA
1 -GAG-AGGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCA-TT-GA
* * * *
37853940 CACGAGAGCTAGTGTAAGACCA--TCTGGGACATGACATCAGCCTCGA
1 GA-GAG-GCCAGTGTAAGACCATGTCTGGGACATG-CATCAGCATTGA
*
37853986 TGAAGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 -G-AGA-GGCCAGTGTAAGACCATGTCTGGGACAT-GCATC
37854027 GGCAACTTAG
Statistics
Matches: 206, Mismatches: 40, Indels: 56
0.68 0.13 0.19
Matches are distributed among these distances:
44 1 0.00
45 4 0.02
46 32 0.16
47 98 0.48
48 49 0.24
49 21 0.10
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGAGGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGA
Found at i:37853828 original size:94 final size:94
Alignment explanation
Indices: 37853701--37854026 Score: 349
Period size: 94 Copynumber: 3.5 Consensus size: 94
37853691 AACATTGGGT
* * *
37853701 TATG-TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTG
1 TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGACACGAGAGCTAGTG
37853765 TAAGACGTGTCTGGGACATGCATCAGCCA
66 TAAGACGTGTCTGGGACATGCATCAGCCA
* * ** * * * * * *
37853794 TATTATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGATATGAGTGCCAGTT
1 TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGACACGAGAGCTAGTG
37853859 TAAGACGTGTCTGGGACATGCATC-GACCTA
66 TAAGACGTGTCTGGGACATGCATCAG-CC-A
* * * * * *
37853889 AATGATGGTAGCCAGTGTAAGA-CATGTGTGGGACAT-GCATAAACACTTATACACGAGAGCTAG
1 TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-TT-GACACGAGAGCTAG
**
37853952 TGTAAGAC-CATCTGGGACATGACATCAGCC-
64 TGTAAGACGTGTCTGGGACATG-CATCAGCCA
*
37853982 TCGATGAAGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 T--ATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
37854027 GGCAACTTAG
Statistics
Matches: 188, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
93 8 0.04
94 101 0.54
95 61 0.32
96 14 0.07
97 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGACACGAGAGCTAGTG
TAAGACGTGTCTGGGACATGCATCAGCCA
Found at i:37868753 original size:27 final size:26
Alignment explanation
Indices: 37868705--37868764 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
37868695 GCGAGGCTGC
* *
37868705 CAGATATTGTGACGAAGTCACCATATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
37868732 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
37868758 CAGATAT
1 CAGATAT
37868765 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37868811 original size:71 final size:67
Alignment explanation
Indices: 37868732--37868873 Score: 169
Period size: 67 Copynumber: 2.1 Consensus size: 67
37868722 TCACCATATA
* * * *
37868732 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAACCCACCAA-ATTGTAGCG
1 CAGATATTGTGGCGAAGCCACCAAAACAG----ATATATGTGGCGAACCCA-CAAGATTGCAGCG
37868796 AGGCTGC
61 AGGCTGC
* **
37868803 CAGATATTGTGGCGAAGTCACCAAAACAGATATATGTGGCGAGGCCACAAGATTGCAGCGAGGCT
1 CAGATATTGTGGCGAAGCCACCAAAACAGATATATGTGGCGAACCCACAAGATTGCAGCGAGGCT
37868868 GC
66 GC
37868870 CAGA
1 CAGA
37868874 ACGCTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
66 3 0.05
67 35 0.56
71 25 0.40
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGGCGAAGCCACCAAAACAGATATATGTGGCGAACCCACAAGATTGCAGCGAGGCT
GC
Found at i:37877880 original size:39 final size:40
Alignment explanation
Indices: 37877804--37877881 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 40
37877794 TAGCTCCTCG
* * *
37877804 TTCAAGTGCCTTCGGGACATAGCCCGGTCATAGTAACTCA
1 TTCAAGTGCCTTCGGGACATAACCCGGTAATAATAACTCA
*
37877844 TTCAA-TGCCTTCGGGACTTAACCCGG-AATTAATAACTC
1 TTCAAGTGCCTTCGGGACATAACCCGGTAA-TAATAACTC
37877882 GCACAAATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.03
39 27 0.82
40 5 0.15
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (40 bp):
TTCAAGTGCCTTCGGGACATAACCCGGTAATAATAACTCA
Found at i:37878974 original size:13 final size:13
Alignment explanation
Indices: 37878956--37878980 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37878946 AGGATGAGCA
37878956 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
37878969 TTTTTTTTCTTT
1 TTTTTTTTCTTT
37878981 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:37880287 original size:13 final size:13
Alignment explanation
Indices: 37880269--37880319 Score: 102
Period size: 13 Copynumber: 3.9 Consensus size: 13
37880259 AAGTAATCAT
37880269 ACACGGGCGTGTC
1 ACACGGGCGTGTC
37880282 ACACGGGCGTGTC
1 ACACGGGCGTGTC
37880295 ACACGGGCGTGTC
1 ACACGGGCGTGTC
37880308 ACACGGGCGTGT
1 ACACGGGCGTGT
37880320 TCCTGCCGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.16, C:0.29, G:0.39, T:0.16
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:37880700 original size:14 final size:14
Alignment explanation
Indices: 37880681--37880707 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37880671 ATATTTGACT
37880681 TGTTCTTAATTATG
1 TGTTCTTAATTATG
37880695 TGTTCTTAATTAT
1 TGTTCTTAATTAT
37880708 TATTATGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:37885326 original size:93 final size:93
Alignment explanation
Indices: 37885213--37885384 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
37885203 GCCCATAAGT
* * *
37885213 GAACTTGGACTCAACTCAACGAG-CTCGGGCGTCCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTC-CGGACATCCGCATCCATAAGTGAACTCAGACTCAACTCA
*
37885277 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCAGATGCCTAGTTACATCTCTC
**
37885306 GAACTCGGACTCAACTCAACGAGTCCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTCCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
37885371 CGAGTTCAGATGCC
66 CGAGCTCAGATGCC
37885385 CAAACATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTCCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:37885375 original size:46 final size:46
Alignment explanation
Indices: 37885205--37885374 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
37885195 TGTAACCCGC
** * * **
37885205 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTCCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
37885251 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
37885301 CTC-T---CGAACTCGGACTCAACTCAACGAG-TCCGGACATTTGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCT-CGGACATTTGCAT
37885344 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
37885375 TTCAGATGCC
Statistics
Matches: 100, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 57 0.57
47 26 0.26
49 1 0.01
50 5 0.05
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:37889644 original size:94 final size:94
Alignment explanation
Indices: 37889530--37889837 Score: 268
Period size: 94 Copynumber: 3.3 Consensus size: 94
37889520 TGTGAGAGCG
* * *
37889530 AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGATGAGGGCTAGTGTATGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGACATGAGAGCTAGTGTAAGACATGTCTG
* *
37889595 GGACATGCATCAGCCACATTACGATAGCC
66 GGACATGCATCGGCCACATTAAGATAGCC
* * * * * * *
37889624 AGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAGATATGAGTGCCAGTGTAAGACGTGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGACATGAGAGCTAGTGTAAGACATGTCTG
* * * * *
37889689 AGACATACATCGGCTA-AGCTT-TG-T-GCT
66 GGACATGCATCGGCCACA--TTAAGATAGCC
* * * * * *
37889716 AGTGTAAGA-CATGTTTGGGACAT-CCATCAGCACTTAAACACGAGAGCTAGTGTAAGACCAGGT
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCA-TT-GACATGAGAGCTAGTGTAAGA-CATGT
* *
37889779 CTGGGACATCGCATCGGCCTCGATGAAGATAGCC
63 CTGGGACAT-GCATCGGCCAC-ATTAAGATAGCC
* *
37889813 AGTGTAAGACCATGTTTGGAACATG
1 AGTGTAAGACCATGTCTGGGACATG
37889838 ACATCGGCAA
Statistics
Matches: 166, Mismatches: 35, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
90 5 0.03
91 14 0.08
92 27 0.16
93 13 0.08
94 78 0.47
95 3 0.02
96 2 0.01
97 11 0.07
98 13 0.08
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGACATGAGAGCTAGTGTAAGACATGTCTG
GGACATGCATCGGCCACATTAAGATAGCC
Found at i:37894571 original size:47 final size:47
Alignment explanation
Indices: 37894455--37894575 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
37894445 GTTATTGTGG
** *
37894455 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGGCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAGGCACAAGACGAGA
* *
37894501 GCCT-GTGTAAGACAATGTATGGGACATGGCATC-GGCATCAAGACGAGT
1 G-CTAGTGTAAGAC-ATGTCTGGGACATGGCATCAGGCA-CAAGACGAGA
*
37894549 GCTAGTGTAAGACATATCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
37894576 ATCGGCCAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
46 10 0.16
47 32 0.51
48 21 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCAGGCACAAGACGAGA
Found at i:37894596 original size:25 final size:26
Alignment explanation
Indices: 37894560--37894608 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
37894550 CTAGTGTAAG
*
37894560 ACATATCTGGGACATG-ATCGGCCAA
1 ACATATCCGGGACATGCATCGGCCAA
37894585 ACATATCCGGGACATGCATCGGCC
1 ACATATCCGGGACATGCATCGGCC
37894609 CCGAGACGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.18
Consensus pattern (26 bp):
ACATATCCGGGACATGCATCGGCCAA
Found at i:37901217 original size:46 final size:44
Alignment explanation
Indices: 37901164--37901336 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 44
37901154 GGTTAGCATC
37901164 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATGTT
* *
37901210 CGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATGTAACTAGGCATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAA-T--G--TT
* *
37901257 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATGTT
* * * *
37901303 CGAGCTCATTGAGTTGAGTCTGAGTTGACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
37901337 GGCGGGTTAC
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.53
47 30 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (44 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAATGTT
Found at i:37901277 original size:47 final size:47
Alignment explanation
Indices: 37901159--37901286 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 47
37901149 AGGAGGGTTA
* *
37901159 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAAT
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAC-GATGCGAAT
*
37901207 G--TTCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATG-TAACT
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTGACGATGCGAA-T
37901250 AGGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACT
1 --GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACT
37901287 TATGGATGTG
Statistics
Matches: 71, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 30 0.42
48 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (47 bp):
GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTGACGATGCGAAT
Found at i:37901328 original size:93 final size:93
Alignment explanation
Indices: 37901159--37901328 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
37901149 AGGAGGGTTA
* * *
37901159 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCATTGAGT
37901224 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * * *
37901252 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCATTGAGT
*
37901317 TGAGTCTGAGTT
66 TGAGTCCGAGTT
37901329 GACTTAGGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:37907662 original size:40 final size:40
Alignment explanation
Indices: 37907588--37907811 Score: 346
Period size: 40 Copynumber: 5.6 Consensus size: 40
37907578 AACCCAAGTA
*
37907588 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
37907627 CCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
37907667 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
37907707 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAC-AAATG
* *
37907748 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA-CAAATG
37907789 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
37907812 CATCCAAATA
Statistics
Matches: 174, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 94 0.54
41 67 0.39
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:37912148 original size:46 final size:44
Alignment explanation
Indices: 37912098--37912270 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 44
37912088 GTTGACCATC
* *
37912098 CGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATGAT
* *
37912144 CGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATGTAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAA-T--G-AT
* **
37912190 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCC
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATGAT
* * *
37912237 CGAGCTCGTTGAGTTGAGTCTGAGTTAACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
37912271 GGCGGGTTAC
Statistics
Matches: 106, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.54
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (44 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAATGAT
Found at i:37912262 original size:93 final size:93
Alignment explanation
Indices: 37912094--37912262 Score: 257
Period size: 93 Copynumber: 1.8 Consensus size: 93
37912084 GATGGTTGAC
* **
37912094 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGTT
1 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGTT
37912159 GAGTCCGAGTTCATGAGATGTAACTAGG
66 GAGTCCGAGTTCATGAGATGTAACTAGG
* * * * *
37912187 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGTT
*
37912252 GAGTCTGAGTT
66 GAGTCCGAGTT
37912263 AACTTAGGGG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
CATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCATGAGATGTAACTAGG
Found at i:37915969 original size:42 final size:42
Alignment explanation
Indices: 37915892--37916030 Score: 156
Period size: 43 Copynumber: 3.3 Consensus size: 42
37915882 TCCCGGATGT
* * * *
37915892 GGTCTTACATGTAACTCAATATCGATGCCTTTGTCCCAGACAG
1 GGTCTTACACGTAAATCAATA-CGATGCCTATGTCCCAGACAC
* *
37915935 GGTCTTACACG-AAATCAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATACGATGCCTATGTCCCAGACAC
* *
37915977 GGTCTTATACGTAAATCTCAAT-CGAGGCCTATGTCCCAGACAC
1 GGTCTTACACGTAAA--TCAATACGATGCCTATGTCCCAGACAC
37916020 GGTCTTACACG
1 GGTCTTACACG
37916031 ATGTCTCAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
42 33 0.40
43 44 0.54
44 2 0.02
45 3 0.04
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGTAAATCAATACGATGCCTATGTCCCAGACAC
Found at i:37920433 original size:51 final size:51
Alignment explanation
Indices: 37920350--37920496 Score: 242
Period size: 51 Copynumber: 2.9 Consensus size: 51
37920340 GGATACACGA
* *
37920350 TGGCCTTCACATAGTACCACCCTTATAG-CCAAAGCTATTTTATTTACAAAG
1 TGGCCTTCACATAGTACCACACTTAT-GTCCAAAGCTATTTTATTCACAAAG
* *
37920401 TGGCCTTGACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTATGTCCAAAGCTATTTTATTCACAAAG
37920452 TGGCCTTCACATAGTACCACACTTATGTCCAAAGCTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTATGTCCAAAGCTATTTTATTC
37920497 CTAAGGTTCA
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 1 0.01
51 88 0.99
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTATGTCCAAAGCTATTTTATTCACAAAG
Found at i:37920564 original size:24 final size:24
Alignment explanation
Indices: 37920532--37920578 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
37920522 ACTTAGTAAA
37920532 ATGCCATGGACTTATTTAACTTAG
1 ATGCCATGGACTTATTTAACTTAG
*
37920556 ATGCCATGGACTTATTTCACTTA
1 ATGCCATGGACTTATTTAACTTA
37920579 TCACATTGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (24 bp):
ATGCCATGGACTTATTTAACTTAG
Found at i:37928939 original size:43 final size:43
Alignment explanation
Indices: 37928873--37928962 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 43
37928863 AAGGTTTGAA
37928873 ATCTAAAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTG
1 ATCTAAAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTG
*
37928916 ATCTGAAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTG
1 ATCTAAAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTG
37928959 ATCT
1 ATCT
37928963 TTATGATTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (43 bp):
ATCTAAAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTG
Found at i:37929840 original size:47 final size:45
Alignment explanation
Indices: 37929789--37929905 Score: 103
Period size: 44 Copynumber: 2.6 Consensus size: 45
37929779 GTGCCATTGT
* *
37929789 AAGACATGTCTGGGACATGCATCGGCCT-CGACGATGGTAGCAAGTGC
1 AAGACATGTCTGGGACATGCATCGGCCTAAGA-G-TGCTA-CAAGTGC
* ** * * * * *
37929836 AAGACGTGTCTACGTCATGCATTGG-CTAAGAGTTCTACTAGTGT
1 AAGACATGTCTGGGACATGCATCGGCCTAAGAGTGCTACAAGTGC
37929880 AAGACATGTCTGGGACATGCATCGGC
1 AAGACATGTCTGGGACATGCATCGGC
37929906 ACATATAAAT
Statistics
Matches: 53, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
44 25 0.47
45 3 0.06
46 3 0.06
47 22 0.42
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (45 bp):
AAGACATGTCTGGGACATGCATCGGCCTAAGAGTGCTACAAGTGC
Found at i:37931680 original size:50 final size:49
Alignment explanation
Indices: 37931561--37931779 Score: 258
Period size: 49 Copynumber: 4.4 Consensus size: 49
37931551 ATGCTACGCA
* ** * *
37931561 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
* ** **
37931610 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * * *
37931660 TAGTAGCCTGCACTTGGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
* *
37931711 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
37931760 TAGTAGCCTGCACTTAGTAC
1 TAGTAGCCTGCACTTAGTAC
37931780 GTGACCTCAC
Statistics
Matches: 140, Mismatches: 27, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 60 0.43
50 44 0.31
51 36 0.26
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:37931734 original size:101 final size:98
Alignment explanation
Indices: 37931561--37931779 Score: 269
Period size: 101 Copynumber: 2.2 Consensus size: 98
37931551 ATGCTACGCA
** *
37931561 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACATGTAGTAGCCTGTACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
37931626 GTACTACACACGTGACCTAACCATCTAATACACG
66 GTACTACACACGCGACC-AACCATCTAATACACG
* * * * *
37931660 TAGTAGCCTGCACTTGGTACTACACACGTG-ATCGAAGTTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCCGGTACACATAGTAGCCTGCAC
* ** **
37931724 TTAGTACTACACATGCGACCAATTATCTGGTACACG
63 TTAGTACTACACACGCGACCAACCATCTAATACACG
37931760 TAGTAGCCTGCACTTAGTAC
1 TAGTAGCCTGCACTTAGTAC
37931780 GTGACCTCAC
Statistics
Matches: 102, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 25 0.25
100 35 0.34
101 42 0.41
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTAATACACG
Found at i:37932061 original size:27 final size:27
Alignment explanation
Indices: 37932031--37932084 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
37932021 TCATACAACC
*
37932031 CATGTAACAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
37932058 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
37932085 TTCACATGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:37937328 original size:43 final size:43
Alignment explanation
Indices: 37937276--37937363 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
37937266 AAATTTAATG
*
37937276 TTAGACCTTTCACTAAATAAGAACAGTTCTGAATAAATTTTGA
1 TTAGACCTTTCACTAAAGAAGAACAGTTCTGAATAAATTTTGA
*
37937319 TTAGACCTTTCACTAAAGAAGAACAGTTTTGAATAAATTTTGA
1 TTAGACCTTTCACTAAAGAAGAACAGTTCTGAATAAATTTTGA
37937362 TT
1 TT
37937364 TACACTTTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (43 bp):
TTAGACCTTTCACTAAAGAAGAACAGTTCTGAATAAATTTTGA
Found at i:37939750 original size:51 final size:51
Alignment explanation
Indices: 37939704--37939840 Score: 181
Period size: 49 Copynumber: 2.7 Consensus size: 51
37939694 GGTTATCTAC
* *
37939704 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGG
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGAACAAAGTTATCCGG
* *
37939755 TACGCATGGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCCGG
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGTG-AACAAAGTTATCCGG
* * *
37939804 TACACGTAGTAGCCTGCACTTAGTACTACGCACGTGA
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGA
37939841 CCTCACAATA
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
49 37 0.49
50 5 0.07
51 33 0.44
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (51 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACACGTGAACAAAGTTATCCGG
Found at i:37942303 original size:13 final size:13
Alignment explanation
Indices: 37942285--37942310 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37942275 AGGCCATGTG
37942285 AAAGGACACGGGC
1 AAAGGACACGGGC
37942298 AAAGGACACGGGC
1 AAAGGACACGGGC
37942311 GTGTGTCCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.38, T:0.00
Consensus pattern (13 bp):
AAAGGACACGGGC
Found at i:37952717 original size:39 final size:39
Alignment explanation
Indices: 37952674--37952831 Score: 217
Period size: 39 Copynumber: 4.1 Consensus size: 39
37952664 GTCCAGCACG
* * *
37952674 TAGCCTGTGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
* * *
37952713 TAGCCTGCAGACATGAAGTCCAGATATAATTCTTGCATA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
*
37952752 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
* ** *
37952791 TAGCCTGTGGACCTGAAGTCTGGATATAATTCTCGCGTA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
37952830 TA
1 TA
37952832 TATATTCACA
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
Found at i:37957779 original size:49 final size:48
Alignment explanation
Indices: 37957618--37957838 Score: 215
Period size: 49 Copynumber: 4.6 Consensus size: 48
37957608 TTATGTGCCC
** * *
37957618 GTGTAAGA-CATGTCTGGGACAT-GCATCGGTCAC-ATTATGAGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-ACCACGATGATGAGAGCCA
** *
37957664 GTGTAAGACCATGTCTGGGACATGGCATCAGTGTA-GA-GATGAGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCA--CCACGATGATGAGAGCCA
* *
37957712 GTGTAAGA-CATGTCTGGGAC-TTGCATCACCACGTAT-ATACGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCACCACG-ATGAT--GAGAGCCA
* * *
37957760 GTGTAAGACCATGTGTGGGACATGGCATCGACCCCGATGATGATAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-ACCACGATGATGAGAGCCA
37957809 GTGTAAGACCATGTCTGGGACATGGCATCA
1 GTGTAAGACCATGTCTGGGACATGGCATCA
37957839 ACAACTTATC
Statistics
Matches: 146, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 18 0.12
47 26 0.18
48 38 0.26
49 47 0.32
50 8 0.05
51 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCACCACGATGATGAGAGCCA
Found at i:37957799 original size:94 final size:94
Alignment explanation
Indices: 37957610--37957838 Score: 239
Period size: 96 Copynumber: 2.4 Consensus size: 94
37957600 CGCATTACTT
* * ** * *
37957610 ATGTGCCCGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGAGTGCCAGTGTAAGACCA
1 ATGTGCCAGTGTAAGACATGTCTGGGACTTGCATC-ACCACATTACGAGAGCCAGTGTAAGACCA
** *
37957675 TGTCTGGGACATGGCATCAGTGTAGAGATG
65 TGTCTGGGACATGGCATCAGTACACAGATG
*
37957705 A-GTGCCAGTGTAAGACATGTCTGGGACTTGCATCACCACGTATATACGAGAGCTAGTGTAAGAC
1 ATGTGCCAGTGTAAGACATGTCTGGGACTTGCATCACCAC--AT-TACGAGAGCCAGTGTAAGAC
* * *
37957769 CATGTGTGGGACATGGCATC-G-ACCCCGATG
63 CATGTCTGGGACATGGCATCAGTACACAGATG
*
37957799 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
1 ATG-T-GCCAGTGTAAGA-CATGTCTGGGAC-TTGCATCA
37957839 ACAACTTATC
Statistics
Matches: 112, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
93 3 0.03
94 36 0.32
95 5 0.04
96 37 0.33
97 12 0.11
98 12 0.11
99 7 0.06
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (94 bp):
ATGTGCCAGTGTAAGACATGTCTGGGACTTGCATCACCACATTACGAGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCAGTACACAGATG
Found at i:37962502 original size:12 final size:12
Alignment explanation
Indices: 37962485--37962509 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37962475 ATGTAAGTGA
37962485 TCTTGATGATTT
1 TCTTGATGATTT
37962497 TCTTGATGATTT
1 TCTTGATGATTT
37962509 T
1 T
37962510 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:37963331 original size:61 final size:61
Alignment explanation
Indices: 37963236--37963357 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
37963226 CCAGTGTAAG
37963236 ACATGTTTGGGACATGCATCGGCCAAATTATGAGTGCCAGTGTAAGACCATGTCTGGGACA
1 ACATGTTTGGGACATGCATCGGCCAAATTATGAGTGCCAGTGTAAGACCATGTCTGGGACA
*
37963297 ACATGTTTGGGACATGCATCGGCCAAATTATGAGTGCCGGTGTAAGACCATGTCTGGGACA
1 ACATGTTTGGGACATGCATCGGCCAAATTATGAGTGCCAGTGTAAGACCATGTCTGGGACA
37963358 TGGCATCAGC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (61 bp):
ACATGTTTGGGACATGCATCGGCCAAATTATGAGTGCCAGTGTAAGACCATGTCTGGGACA
Found at i:37963396 original size:47 final size:44
Alignment explanation
Indices: 37963329--37963505 Score: 151
Period size: 47 Copynumber: 3.9 Consensus size: 44
37963319 CCAAATTATG
*
37963329 AGTGCCGGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAGAT
1 AGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCAT-GAGAT
* * ** *
37963376 AAGTGCCAGTGTAAGACATGTCCGAGACATGCATTGGCCTCGACGAT
1 -AGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCAT-GA-GAT
* * * *
37963423 -GATAGCCAGTGTAAGACGTGTCTAGGACATCCATCGGC-TGAGAGT
1 AG-T-GCCAGTGTAAGACATGTCTGGGACATGCATCAGCATGAGA-T
* *
37963468 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCA
1 AGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCA
37963506 CGTATATACG
Statistics
Matches: 105, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
44 31 0.30
45 5 0.05
46 12 0.11
47 43 0.41
48 14 0.13
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATGAGAT
Found at i:37968657 original size:43 final size:43
Alignment explanation
Indices: 37968609--37968703 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
37968599 TCCTATATAT
** * *
37968609 GGTCTTACATGTTATC-ATATATCGATGCCAATGTCCCAAATAG
1 GGTCTTACATGAAATCGAT-TAACGATGCCAATGTCCCAAACAG
* * *
37968652 GGTCTTACATGAAATCGATTAACGATGCCAATGTTCCAGACAT
1 GGTCTTACATGAAATCGATTAACGATGCCAATGTCCCAAACAG
37968695 GGTCTTACA
1 GGTCTTACA
37968704 CATAATCTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 42 0.95
44 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (43 bp):
GGTCTTACATGAAATCGATTAACGATGCCAATGTCCCAAACAG
Found at i:37969592 original size:15 final size:15
Alignment explanation
Indices: 37969572--37969601 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37969562 ATTATGAAAG
37969572 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
37969587 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
37969602 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:37973536 original size:40 final size:40
Alignment explanation
Indices: 37973473--37973644 Score: 215
Period size: 40 Copynumber: 4.3 Consensus size: 40
37973463 ACCCAAGTAT
37973473 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
*
37973512 CTTCAGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
37973552 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * ** * *
37973592 CTTCGGGACATAGCCCGGATATAGTAACCCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
37973632 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
37973645 TTCGGTTATC
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 10 0.09
40 102 0.89
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:37978042 original size:355 final size:357
Alignment explanation
Indices: 37977388--37978104 Score: 1384
Period size: 355 Copynumber: 2.0 Consensus size: 357
37977378 AGTAACCAGC
37977388 TAGTCCCAAAAAGCTTTGAACCTCAGTAATATTTCTCGGAGGCTTCTAGTTAAGTATGGCTGAAA
1 TAGTCCCAAAAAGCTTTGAACCTCAGTAATATTTCTCGGAGGCTTCTAGTTAAGTATGGCTGAAA
37977453 TTTTGCTCGGATAAACTCGAATACCCGATGCTGATACCACATGACCCAAGAAGCTAACCTCTCTT
66 TTTTGCTCGGATAAACTCGAATACCCGATGCTGATACCACATGACCCAAGAAGCTAACCTCTCTT
*
37977518 AATCAGAACTCGTACTTATTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGGAACACTAA
131 AACCAGAACTCG-ACTTATTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGGAACACTAA
37977583 TCCCAGGTGTTCAGTATGATCGGTTTCATTTCTCGAATAGACCAAAATATCATCAATAAACACAA
195 TCCCAGGTGTTCAGTATGATCGGTTTCATTTCTCGAATAGACCAAAATATCATCAATAAACACAA
*
37977648 CTACAAAGCGATCCAAATACGGTCTGAAGATCCGATTCATCAAATCCATAAATACCGCATGGGCA
260 CTACAAACCGATCCAAATACGGTCTGAAGATCCGATTCATCAAATCCATAAATACCGCATGGGCA
37977713 TTTGTGAGCCCAAACGGTATCACTAAGAATTCG
325 TTTGTGAGCCCAAACGGTATCACTAAGAATTCG
37977746 TAGTCCCAAAAAGCTTTGAACCTCAGTAATATTTCTCGGAGGCTTCTAGTTAAGTATGGCTGAAA
1 TAGTCCCAAAAAGCTTTGAACCTCAGTAATATTTCTCGGAGGCTTCTAGTTAAGTATGGCTGAAA
37977811 TTTTGCTCGGATAAACTCGAATACCCGATGCTGATACCACATGACCCAAGAAGCTAACCTCTCTT
66 TTTTGCTCGGATAAACTCGAATACCCGATGCTGATACCACATGACCCAAGAAGCTAACCTCTCTT
37977876 AACCAGAACTC-ACTTATT-AACTTAGCATATAACTGCTTATCCCGTAAAATTTGGAACACTAAT
131 AACCAGAACTCGACTTATTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGGAACACTAAT
*
37977939 CCCAGGTGTTCAGTATGATCGGTTTCATTTCTCGAATAGACCAAAATATCATCGATAAACACAAC
196 CCCAGGTGTTCAGTATGATCGGTTTCATTTCTCGAATAGACCAAAATATCATCAATAAACACAAC
37978004 TACAAACCGATCCAAATACGGTCTGAAGATCCGATTCATCAAATCCATAAATACCGCATGGGCAT
261 TACAAACCGATCCAAATACGGTCTGAAGATCCGATTCATCAAATCCATAAATACCGCATGGGCAT
37978069 TTGTGAGCCCAAACGGTATCACTAAGAATTCG
326 TTGTGAGCCCAAACGGTATCACTAAGAATTCG
37978101 TAGT
1 TAGT
37978105 GACCGTATCT
Statistics
Matches: 356, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
355 209 0.59
356 7 0.02
358 140 0.39
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (357 bp):
TAGTCCCAAAAAGCTTTGAACCTCAGTAATATTTCTCGGAGGCTTCTAGTTAAGTATGGCTGAAA
TTTTGCTCGGATAAACTCGAATACCCGATGCTGATACCACATGACCCAAGAAGCTAACCTCTCTT
AACCAGAACTCGACTTATTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGGAACACTAAT
CCCAGGTGTTCAGTATGATCGGTTTCATTTCTCGAATAGACCAAAATATCATCAATAAACACAAC
TACAAACCGATCCAAATACGGTCTGAAGATCCGATTCATCAAATCCATAAATACCGCATGGGCAT
TTGTGAGCCCAAACGGTATCACTAAGAATTCG
Found at i:37981897 original size:40 final size:40
Alignment explanation
Indices: 37981822--37981997 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
37981812 ACCCAAGTAT
*
37981822 CTTCGGGAT-TTAG-CCGGATATA-AAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
37981860 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
37981900 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
37981940 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
37981980 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
37981998 TTATCATCCG
Statistics
Matches: 119, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.01
38 11 0.09
39 11 0.09
40 94 0.79
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:37987108 original size:40 final size:40
Alignment explanation
Indices: 37987030--37987210 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
37987020 ACCCAAGTAT
* * *
37987030 CTTCGGAATTTAG-CCGGATATAG-CAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
37987069 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
37987109 CTTCGGGACTTAGCCCGGATATAGTCACTAGGACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
37987149 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
37987189 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
37987211 CATCCAAATA
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 10 0.08
40 116 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:37995759 original size:43 final size:43
Alignment explanation
Indices: 37995711--37995840 Score: 154
Period size: 43 Copynumber: 3.0 Consensus size: 43
37995701 AAATAGGATT
37995711 TCGATATGTGTTCTCGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGTTCTCGTGTAAGACCATGTCTGGGACATTGGCA
* * * * *
37995754 TCGATATGTTTTCTCGTGTAAGACCCTGTCCGGGATAGTGGCA
1 TCGATATGTGTTCTCGTGTAAGACCATGTCTGGGACATTGGCA
* * * * *
37995797 TCGATATGTGATT-ACATGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATGTG-TTCTCGTGTAAGACCATGTCTGGGACATTGGCA
37995840 T
1 T
37995841 TGTACGATAG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 69 0.97
44 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
TCGATATGTGTTCTCGTGTAAGACCATGTCTGGGACATTGGCA
Found at i:37997917 original size:40 final size:40
Alignment explanation
Indices: 37997836--37998024 Score: 294
Period size: 40 Copynumber: 4.7 Consensus size: 40
37997826 TATTCGGATG
37997836 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACT
*
37997877 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
37997917 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
37997957 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
37997997 ATATCC-GGCTAA-ATCCCGAAGGTATTTG
1 ATATCCGGGCTAAGA-CCCGAAGGCATTTG
37998025 GGTTTGGAAA
Statistics
Matches: 140, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.01
39 19 0.14
40 94 0.67
41 26 0.19
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:38000927 original size:37 final size:37
Alignment explanation
Indices: 38000885--38000958 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
38000875 TAGTATAACT
*
38000885 TGTCTTGCCTTACCTTACCTTGCTATTCTCTTTAAAC
1 TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
38000922 TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
1 TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
38000959 CTTCCCATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.18, C:0.28, G:0.08, T:0.46
Consensus pattern (37 bp):
TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
Found at i:38001130 original size:53 final size:54
Alignment explanation
Indices: 38001001--38001255 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
38000991 ACACGGGTAC
* * * *
38001001 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
38001050 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATTCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
38001103 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * ** * *
38001158 CTTATCAATGTCATATCTTGGCATGGTCTTACATGATATCCTTACCTTA-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
38001211 CCTTATCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
38001256 AAACCCTAAT
Statistics
Matches: 174, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 37 0.21
50 1 0.01
52 1 0.01
53 50 0.29
54 11 0.06
55 72 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:38001192 original size:108 final size:110
Alignment explanation
Indices: 38001046--38001248 Score: 277
Period size: 108 Copynumber: 1.9 Consensus size: 110
38001036 GTATCCTTTT
* * * * *
38001046 GAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATTCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATATCTTGACATGGTCTTACATGATATCCTTACCTTA-GAAACCTCACC
38001109 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * * * *
38001154 GAAACTTATCAATGTCATATCTTGGCATGGTCTTACATGATATCCTTACCTTAGAAACCTTATCA
1 GAAACTTACCAATGCCATATCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTCACCA
*
38001219 ATTGTCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
38001249 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.58
109 6 0.07
110 27 0.33
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (110 bp):
GAAACTTACCAATGCCATATCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:38003642 original size:18 final size:18
Alignment explanation
Indices: 38003602--38003647 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
38003592 CTTGGTCCAT
* *
38003602 TGCAGTAATAGTAAATAG
1 TGCAGTAACAATAAATAG
* *
38003620 AGCAGTAACAATAATTAG
1 TGCAGTAACAATAAATAG
38003638 TGCAGTAACA
1 TGCAGTAACA
38003648 GTTTGAACAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.24
Consensus pattern (18 bp):
TGCAGTAACAATAAATAG
Found at i:38009682 original size:39 final size:39
Alignment explanation
Indices: 38009616--38009754 Score: 181
Period size: 39 Copynumber: 3.5 Consensus size: 39
38009606 ATATAATCAA
* * *
38009616 GGGCACGTAAT-TGCAAATCAGGGGTACCAAAGTACAATAG
1 GGGCACGT-ATGTGC-ATTCAGGGGTACCGAAGTACAACAG
* *
38009656 GGGCACGTATGTGTATTTAGGGGTACCGAAGTACAACAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAACAG
** *
38009695 GGGCACGTATGTGCATTCAAAGGTACCGAAGTACAACAA
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAACAG
38009734 GGGCACGTATGTGCATTCAGG
1 GGGCACGTATGTGCATTCAGG
38009755 TATAATTACA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 76 0.88
40 10 0.12
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (39 bp):
GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAACAG
Found at i:38014634 original size:27 final size:27
Alignment explanation
Indices: 38014615--38014770 Score: 195
Period size: 27 Copynumber: 5.8 Consensus size: 27
38014605 ATTACCAAAG
* *
38014615 TACCCTCGATTTATATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
38014642 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
38014669 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
38014696 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
38014723 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
38014750 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
38014771 TTAAAATACC
Statistics
Matches: 115, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:38014662 original size:54 final size:54
Alignment explanation
Indices: 38014615--38014770 Score: 231
Period size: 54 Copynumber: 2.9 Consensus size: 54
38014605 ATTACCAAAG
* * *
38014615 TACCCTCGATTTATATAATTACCATTTTACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* * * *
38014669 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* *
38014723 TACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTA
38014771 TTAAAATACC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
Found at i:38014716 original size:81 final size:81
Alignment explanation
Indices: 38014615--38014770 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
38014605 ATTACCAAAG
* *
38014615 TACCCTCGATTTATATAATTACCATTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATT
*
38014680 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
** * * * *
38014696 TACCCTCGATTTATAAAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATT
38014761 TACAAAATTA
66 TACAAAATTA
38014771 TTAAAATACC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:38014780 original size:27 final size:27
Alignment explanation
Indices: 38014750--38014997 Score: 130
Period size: 27 Copynumber: 9.2 Consensus size: 27
38014740 ATTACTATTT
**
38014750 TACCCTCGATTTACAAAATTATTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
38014777 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
38014804 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * ** * *
38014831 TACCCT-GGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * **
38014857 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
38014884 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *** *
38014911 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
** **
38014938 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
38014965 TACCC-CTAATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
38014992 TACCCT
1 TACCCT
38014998 TGACTTTCTA
Statistics
Matches: 177, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
26 25 0.14
27 151 0.85
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:38014797 original size:54 final size:54
Alignment explanation
Indices: 38014602--38014836 Score: 175
Period size: 54 Copynumber: 4.4 Consensus size: 54
38014592 CTCAAATTGT
* * * * * *
38014602 AAAATTACCAAAGTACCCTCGATTTATATAATTACCATTTTACCCTCGACTTAC
1 AAAATTACTAAAATACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
* ***** * * *
38014656 AGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACTAAAATACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
**** * *
38014710 AAAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
* * * * *** * *
38014764 AAAATTATTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGT
1 AAAATTACTAAAATACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTA-C
*
38014818 AAAATTACCAAAATACCCT
1 AAAATTACTAAAATACCCT
38014837 GGTCTGTAAA
Statistics
Matches: 145, Mismatches: 35, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
53 2 0.01
54 143 0.99
ACGTcount: A:0.35, C:0.22, G:0.07, T:0.36
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
Found at i:38014875 original size:80 final size:81
Alignment explanation
Indices: 38014764--38014970 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 81
38014754 CTCGATTTAC
* * **
38014764 AAAATTATTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
38014828 AAATACC-CTGGTCTGT
65 AAATACCACTGGTCTGT
* * **
38014844 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
*
38014909 AATACCACTGGTTTGT
66 AATACCACTGGTCTGT
* ** **
38014925 GAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCC
38014971 TAATTTACAA
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
79 2 0.02
80 60 0.55
81 48 0.44
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTGGTCTGT
Found at i:38014921 original size:54 final size:53
Alignment explanation
Indices: 38014791--38014969 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 53
38014781 TTTGGTTTAC
* ** * *
38014791 AAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA-CCCTGGTCTGT
1 AAAATTACCAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* *
38014844 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* * * *
38014898 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
38014952 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
38014970 CTAATTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 36 0.33
54 73 0.66
55 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
Found at i:38014963 original size:81 final size:81
Alignment explanation
Indices: 38014791--38014972 Score: 251
Period size: 81 Copynumber: 2.3 Consensus size: 81
38014781 TTTGGTTTAC
* * *
38014791 AAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAA
1 AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAA
**
38014855 AATACCCTTGGTTTGT
66 AATACCCTTAATTTGT
** * * *
38014871 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCG
1 AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACC-CTGGTCTGTAAAATTACCA
38014935 AAATACCCTTAATTTGT
65 AAATACCCTTAATTTGT
38014952 AAAATTACCAAAATACCCCTA
1 AAAATTACCAAAATACCCCTA
38014973 ATTTACAAAG
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 35 0.39
81 55 0.61
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAA
AATACCCTTAATTTGT
Found at i:38014992 original size:54 final size:53
Alignment explanation
Indices: 38014819--38015074 Score: 191
Period size: 54 Copynumber: 4.7 Consensus size: 53
38014809 TCGATCAGTA
* * * *
38014819 AAATTACCA-AAATACCC-TGGTCTGTAAAATTGCTAAAATACC-CTTGGTTTGTA-
1 AAATTA-CAGAAATACCCTTAGTTTGTAAAATTACCAAAATACCAC-TGG-TT-TAC
* **
38014872 AAATTACCA-AAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTA-CAGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTT-AC
* * * **
38014926 AAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTAC
1 AAATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTAC
* * * *
38014979 AAAGTTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTAC
1 AAA-TTACAGAAATACCCTT-AGTTTGT-AAAATTACCA-AAATACCACTGGTTTAC
* * * *
38015035 AAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 -AAATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAA
38015075 CACCCTTGTA
Statistics
Matches: 164, Mismatches: 28, Indels: 21
0.77 0.13 0.10
Matches are distributed among these distances:
52 1 0.01
53 23 0.14
54 90 0.55
55 12 0.07
56 35 0.21
57 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
AAATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTAC
Found at i:38014993 original size:81 final size:80
Alignment explanation
Indices: 38014818--38014997 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 80
38014808 CTCGATCAGT
* * **
38014818 AAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAA
1 AAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCCTTAATTTGTAAAATTACCAAA
* **
38014883 ATACCCCTAGTTTGT
66 ATACCCCTAATTTAC
* * *
38014898 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACC-CTGGTCTGTAAAATTACCAAAATACCCTTAATTTGTAAAATTACCAA
38014963 AATACCCCTAATTTAC
65 AATACCCCTAATTTAC
*
38014979 AAAGTTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
38014998 TGACTTTCTA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 21 0.24
81 66 0.76
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCCTTAATTTGTAAAATTACCAAA
ATACCCCTAATTTAC
Found at i:38015047 original size:27 final size:27
Alignment explanation
Indices: 38015008--38015059 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
38014998 TGACTTTCTA
38015008 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
38015035 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
38015060 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:38015143 original size:27 final size:27
Alignment explanation
Indices: 38015113--38015199 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
38015103 ACCCCTATTA
*
38015113 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAGTGACCGTAAAGCCCCTGTAG
38015140 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAGTGACCGTAAAGCCCCTGTAG
* *
38015167 GGTAAAGTGACAGTAATA-CCCCTGTAT
1 GGTAAAGTGACCGTAA-AGCCCCTGTAG
38015194 GGTAAA
1 GGTAAA
38015200 ATGATGAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (27 bp):
GGTAAAGTGACCGTAAAGCCCCTGTAG
Found at i:38016033 original size:25 final size:25
Alignment explanation
Indices: 38015995--38016089 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
38015985 AGGAAGTGCT
*
38015995 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
38016020 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
38016045 AAAAGGGCTTTGGCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
38016070 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
38016090 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:38016102 original size:24 final size:24
Alignment explanation
Indices: 38015995--38016125 Score: 120
Period size: 25 Copynumber: 5.2 Consensus size: 24
38015985 AGGAAGTGCT
* *
38015995 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
*
38016020 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
* *
38016045 AAAAGGGCTTTGGCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAT-G
*
38016070 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATG
**
38016093 AAAAGAGGCTAGGCCTCCAGTTATATG
1 AAAAG-GGCTTTGCC-CCAGTT-TATG
38016120 ATAAAG
1 A-AAAG
38016126 CAGCTATGCT
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.05
24 11 0.12
25 66 0.73
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:38016113 original size:50 final size:50
Alignment explanation
Indices: 38015993--38016114 Score: 142
Period size: 50 Copynumber: 2.4 Consensus size: 50
38015983 GGAGGAAGTG
* *
38015993 CTAAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
* * *
38016043 CGAAAAGGGCTTTGG-CCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-
1 CTAAAAGGGC-TAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
*
38016091 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTAGGCC-CCAGTT
38016115 ATATGATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
48 8 0.13
49 7 0.12
50 43 0.72
51 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (50 bp):
CTAAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:38016305 original size:42 final size:42
Alignment explanation
Indices: 38016246--38016369 Score: 203
Period size: 42 Copynumber: 3.0 Consensus size: 42
38016236 CAAATAGACC
*
38016246 TGCATACATTGATTGGTATTTCATGTGATATTGAAATGGGCT
1 TGCATACATTCATTGGTATTTCATGTGATATTGAAATGGGCT
38016288 TGCATACATTCATTGGTATTTCATGTGATATTGAAATGGGCT
1 TGCATACATTCATTGGTATTTCATGTGATATTGAAATGGGCT
* ** *
38016330 TGCATACATCCATTGACATTACATGTGATATTGAAATGGG
1 TGCATACATTCATTGGTATTTCATGTGATATTGAAATGGG
38016370 ACTAAGGGCC
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 77 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (42 bp):
TGCATACATTCATTGGTATTTCATGTGATATTGAAATGGGCT
Found at i:38016429 original size:31 final size:31
Alignment explanation
Indices: 38016394--38016472 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
38016384 CGTTTACAGT
*
38016394 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
38016425 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
38016456 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
38016473 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:38019015 original size:29 final size:29
Alignment explanation
Indices: 38018976--38019054 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
38018966 CTTAATAATC
*
38018976 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
38019006 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
38019035 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
38019055 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:38023258 original size:11 final size:11
Alignment explanation
Indices: 38023242--38023272 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
38023232 CTATCTTTTA
*
38023242 TTTATTTTGTT
1 TTTATTTTATT
38023253 TTTATTTTATT
1 TTTATTTTATT
38023264 TTTATTTTA
1 TTTATTTTA
38023273 AAACTCTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:38024288 original size:43 final size:43
Alignment explanation
Indices: 38024201--38024481 Score: 239
Period size: 43 Copynumber: 6.6 Consensus size: 43
38024191 TGATAGACAA
* * *
38024201 AGTGCATCATTGGATAAACCGAA-GCAATATACTAGCACACAC
1 AGTGCATCATCGGATAAACCGAAGGAAATATACTAGCACATAC
*
38024243 AGTGCATCACCGGATAAA-CGAAAGGAAATATACTAGCACATAC
1 AGTGCATCATCGGATAAACCG-AAGGAAATATACTAGCACATAC
* * * *
38024286 AGTGCATCATC-GAGTAAACTGAAGGAAATATACTGGGACATAT
1 AGTGCATCATCGGA-TAAACCGAAGGAAATATACTAGCACATAC
*
38024329 AGTGCATCATCGGATAAATCGAAGGAAATATACTAGCACATAC
1 AGTGCATCATCGGATAAACCGAAGGAAATATACTAGCACATAC
* * * * ** * ** * *
38024372 AATGCATCATTGAATATATAGAAGCATCTATTCT-GACACACAC
1 AGTGCATCATCGGATAAACCGAAGGAAATATACTAG-CACATAC
* ** ** *
38024415 AATGCATCA-CTGGATAAACCGAAATATCTATACTAGCACACAC
1 AGTGCATCATC-GGATAAACCGAAGGAAATATACTAGCACATAC
* *
38024458 AGTGCATCATTGGATAAAACGAAG
1 AGTGCATCATCGGATAAACCGAAG
38024482 CATAACCTGT
Statistics
Matches: 194, Mismatches: 36, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.01
42 21 0.11
43 167 0.86
44 4 0.02
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (43 bp):
AGTGCATCATCGGATAAACCGAAGGAAATATACTAGCACATAC
Found at i:38024484 original size:86 final size:85
Alignment explanation
Indices: 38024201--38024485 Score: 276
Period size: 86 Copynumber: 3.3 Consensus size: 85
38024191 TGATAGACAA
* *
38024201 AGTGCATCATTGGATAAACCGAAGCA-ATATACT-AGCACACACAGTGCATCACCGGATAAACGA
1 AGTGCATCATTGGATAAAACGAAGCATATATACTGA-CACACACAGTGCATCACTGGATAAACGA
38024264 AAGGAAATATACTAGCACATAC
65 AA-GAAATATACTAGCACATAC
* * * ** * *
38024286 AGTGCATCA-TCGAGT-AAACTGAAGGAAATATACTGGGACATATAGTGCATCA-TCGGATAAAT
1 AGTGCATCATTGGA-TAAAAC-GAAGCATATATACTGACACACACAGTGCATCACT-GGATAAA-
*
38024348 CGAAGGAAATATACTAGCACATAC
62 CGAAAGAAATATACTAGCACATAC
* * * * * *
38024372 AATGCATCATTGAATATATA-GAAGCATCTATTCTGACACACACAATGCATCACTGGATAAACCG
1 AGTGCATCATTGGATA-AAACGAAGCATATATACTGACACACACAGTGCATCACTGGATAAA-CG
* ** *
38024436 AAATATCTATACTAGCACACAC
64 AAAGAAATATACTAGCACATAC
38024458 AGTGCATCATTGGATAAAACGAAGCATA
1 AGTGCATCATTGGATAAAACGAAGCATA
38024486 ACCTGTACAT
Statistics
Matches: 157, Mismatches: 32, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
84 6 0.04
85 17 0.11
86 125 0.80
87 7 0.04
88 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (85 bp):
AGTGCATCATTGGATAAAACGAAGCATATATACTGACACACACAGTGCATCACTGGATAAACGAA
AGAAATATACTAGCACATAC
Found at i:38026029 original size:30 final size:30
Alignment explanation
Indices: 38025995--38026055 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
38025985 TTCCCGAGCC
*
38025995 TAGGGATAAAAGTGTAAATATGCAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * * *
38026025 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
38026055 T
1 T
38026056 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:38032442 original size:54 final size:54
Alignment explanation
Indices: 38032311--38032442 Score: 131
Period size: 54 Copynumber: 2.4 Consensus size: 54
38032301 ACCATTGCAA
* * ** * *
38032311 GGCATGGTCTTACTGGGATCTTTCCCTTATAGTAGTTTATCAATGCCATGTCCT
1 GGCATGGTCTTACTGGTATCCTTCCCTTATAGTAACTTACCAATGCCATGCCCT
* * * * * *
38032365 GACATGATCTTACATGATTTCCTTGCCTTGTA-TAACTTACCAATGCCATGCCCT
1 GGCATGGTCTTAC-TGGTATCCTTCCCTTATAGTAACTTACCAATGCCATGCCCT
38032419 GGCATGGTCTTACTTGGTATCCTT
1 GGCATGGTCTTAC-TGGTATCCTT
38032443 AAACCCTAAT
Statistics
Matches: 60, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
54 48 0.80
55 12 0.20
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
GGCATGGTCTTACTGGTATCCTTCCCTTATAGTAACTTACCAATGCCATGCCCT
Found at i:38038254 original size:21 final size:21
Alignment explanation
Indices: 38038228--38038282 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
38038218 CCGTGTGACA
38038228 CACACGGCCGTGTCACAAGAT
1 CACACGGCCGTGTCACAAGAT
* * * * *
38038249 CACACGACCATGTCGCTAGGT
1 CACACGGCCGTGTCACAAGAT
*
38038270 TACACGGCCGTGT
1 CACACGGCCGTGT
38038283 TGGGAGCCCG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.24, C:0.33, G:0.25, T:0.18
Consensus pattern (21 bp):
CACACGGCCGTGTCACAAGAT
Found at i:38039191 original size:18 final size:18
Alignment explanation
Indices: 38039168--38039247 Score: 97
Period size: 18 Copynumber: 4.4 Consensus size: 18
38039158 TACCAATATC
38039168 ATTCAGTAACAATCAATT
1 ATTCAGTAACAATCAATT
* *
38039186 ATTCAGTAGCAATCAGTT
1 ATTCAGTAACAATCAATT
*
38039204 ATTCAGTAATAATCAATT
1 ATTCAGTAACAATCAATT
* * * *
38039222 ACTCAGTAACAGTCAGTC
1 ATTCAGTAACAATCAATT
38039240 ATTCAGTA
1 ATTCAGTA
38039248 TCTTTACTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:38039209 original size:36 final size:36
Alignment explanation
Indices: 38039166--38039247 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 36
38039156 TTTACCAATA
* *
38039166 TCATTCAGTAACAATCAATTATTCAGTAGCAATCAG
1 TCATTCAGTAACAATCAATTACTCAGTAACAATCAG
* * *
38039202 TTATTCAGTAATAATCAATTACTCAGTAACAGTCAG
1 TCATTCAGTAACAATCAATTACTCAGTAACAATCAG
38039238 TCATTCAGTA
1 TCATTCAGTA
38039248 TCTTTACTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (36 bp):
TCATTCAGTAACAATCAATTACTCAGTAACAATCAG
Found at i:38040933 original size:15 final size:17
Alignment explanation
Indices: 38040904--38040935 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
38040894 TACTCAAATG
38040904 CATATATTACAATTGTT
1 CATATATTACAATTGTT
38040921 CATATA-TAC-ATTGTT
1 CATATATTACAATTGTT
38040936 ACATTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
CATATATTACAATTGTT
Found at i:38041058 original size:20 final size:20
Alignment explanation
Indices: 38041029--38041068 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
38041019 AACTAATTTA
38041029 ATATAATTTATTAC-TAATAT
1 ATATAATTTA-TACTTAATAT
*
38041049 ATATATTTTATACTTAATAT
1 ATATAATTTATACTTAATAT
38041069 CTAAGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATAATTTATACTTAATAT
Found at i:38050272 original size:17 final size:17
Alignment explanation
Indices: 38050247--38050280 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38050237 TGTTGGTGCA
*
38050247 TATTTTCATTGCATTTT
1 TATTATCATTGCATTTT
38050264 TATTATCATTGCATTTT
1 TATTATCATTGCATTTT
38050281 AATGTTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.62
Consensus pattern (17 bp):
TATTATCATTGCATTTT
Found at i:38053358 original size:93 final size:93
Alignment explanation
Indices: 38053199--38053369 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
38053189 GGATGGTTGA
* *
38053199 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
38053264 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
38053292 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
38053357 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
38053370 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:38053372 original size:46 final size:46
Alignment explanation
Indices: 38053203--38053374 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
38053193 GGTTGAGCAT
* * * *
38053203 CCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
38053249 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
38053294 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
38053342 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
38053375 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:38060785 original size:46 final size:46
Alignment explanation
Indices: 38060735--38060908 Score: 221
Period size: 46 Copynumber: 3.7 Consensus size: 46
38060725 TGGTTGAGCA
38060735 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
38060781 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-C--GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
38060827 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
38060875 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
38060909 GGGGCGGGTT
Statistics
Matches: 111, Mismatches: 7, Indels: 20
0.80 0.05 0.14
Matches are distributed among these distances:
43 4 0.04
44 5 0.05
45 1 0.01
46 62 0.56
48 30 0.27
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:38060893 original size:94 final size:94
Alignment explanation
Indices: 38060732--38060903 Score: 317
Period size: 94 Copynumber: 1.8 Consensus size: 94
38060722 GGATGGTTGA
* *
38060732 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
38060797 TGAGTCCGAGTTCCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCCGTGAGATGTAACTAG
*
38060826 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
38060891 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
38060904 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (94 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCCGTGAGATGTAACTAG
Found at i:38076706 original size:14 final size:15
Alignment explanation
Indices: 38076679--38076707 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
38076669 GAACTTTTAA
38076679 GTGGTTGAGTTGTGG
1 GTGGTTGAGTTGTGG
38076694 GTGGTTG-GTTGTGG
1 GTGGTTGAGTTGTGG
38076708 CTGAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.03, C:0.00, G:0.55, T:0.41
Consensus pattern (15 bp):
GTGGTTGAGTTGTGG
Found at i:38078243 original size:18 final size:18
Alignment explanation
Indices: 38078220--38078259 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
38078210 CATTATTTAT
38078220 TGCACTATTTACTATTAC
1 TGCACTATTTACTATTAC
* * *
38078238 TGCACTGTTTAGTGTTAC
1 TGCACTATTTACTATTAC
38078256 TGCA
1 TGCA
38078260 ATGGCCAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (18 bp):
TGCACTATTTACTATTAC
Found at i:38081631 original size:13 final size:13
Alignment explanation
Indices: 38081613--38081640 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
38081603 ACTGTTTGGC
38081613 AAACTCTTATGTT
1 AAACTCTTATGTT
38081626 AAACTCTTATGTT
1 AAACTCTTATGTT
38081639 AA
1 AA
38081641 GTGAACGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (13 bp):
AAACTCTTATGTT
Found at i:38082936 original size:16 final size:16
Alignment explanation
Indices: 38082915--38082946 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
38082905 ATACCGAATA
38082915 CATAAAGCTTAGTAAG
1 CATAAAGCTTAGTAAG
38082931 CATAAAGCTTAGTAAG
1 CATAAAGCTTAGTAAG
38082947 TTTCATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (16 bp):
CATAAAGCTTAGTAAG
Found at i:38083282 original size:47 final size:47
Alignment explanation
Indices: 38083213--38083434 Score: 203
Period size: 47 Copynumber: 4.7 Consensus size: 47
38083203 TAAGGTATCA
* *
38083213 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCGTATCTC-ATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TATCTCGATGCCG
* * *
38083260 ATGCCATGTCCTAGACATGGTCTTACACT-G-ACTATCCTATC-ATAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTAT-C--TCGAT-GCCG
* * *
38083308 ATG-CATGTCCCAGAAAT-GTCTTACACTTGCT-TACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTA--TCTCGATGCCG
*
38083354 ATG-CATGTCCCAGACAT-GTCTTACACTAGAACTC-GTCTCGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG--CTCTATCTCGATGCCG
*
38083400 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT
38083435 CATAATGTGG
Statistics
Matches: 145, Mismatches: 15, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
44 3 0.02
45 2 0.01
46 59 0.41
47 60 0.41
48 20 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTATCTCGATGCCG
Found at i:38083357 original size:46 final size:45
Alignment explanation
Indices: 38083307--38083430 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 45
38083297 TATCATAGCT
*
38083307 GATGCATGTCCCAGAAATGTCTTACACTTG-CTTACGTCTCGAGGCC
1 GATGCATGTCCCAGAAATGTCTTACACTAGAC-T-CGTCTCGAGGCC
* *
38083353 GATGCATGTCCCAGACATGTCTTACACTAGAACTCGTCTCGATGCC
1 GATGCATGTCCCAGAAATGTCTTACACTAG-ACTCGTCTCGAGGCC
38083399 GATGCCATGTCCCA-AACATGGTCTTACACTAG
1 GATG-CATGTCCCAGAA-AT-GTCTTACACTAG
38083431 CTCTCATAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
46 44 0.64
47 12 0.17
48 13 0.19
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGAAATGTCTTACACTAGACTCGTCTCGAGGCC
Found at i:38083469 original size:140 final size:139
Alignment explanation
Indices: 38083217--38083470 Score: 327
Period size: 140 Copynumber: 1.8 Consensus size: 139
38083207 GTATCAATGC
* * *
38083217 CATGTCCCAGACACGGTCTTACACTAGCTCGTATCTCATGTCGATGCCATGTCCTAGACATGGTC
1 CATGTCCCAGACACGGTCTTACACTAGCTCG-ATCTCATGCCGATGCCATGTCCCAAACATGGTC
* *
38083282 TTACACTGACTATCCTATCATAGCTGATGCATGTCCCAGAAATGTCTTACACTTGCTTACGTCTC
65 TTACACTGACTATCATATCATAGCTGATGCATGTCACAGAAATGTCTTACACTTGCTTACGTCTC
38083347 GAGGCCGATG
130 GAGGCCGATG
*
38083357 CATGTCCCAGACA-TGTCTTACACTAGAACTCG-TCTCGATGCCGATGCCATGTCCCAAACATGG
1 CATGTCCCAGACACGGTCTTACACTAG--CTCGATCTC-ATGCCGATGCCATGTCCCAAACATGG
* * * * *
38083420 TCTTACACT-AGCTCTCATAAT-GTGGCTGATGCATGTCATAGACATGTCTTA
63 TCTTACACTGA-CTATCAT-ATCATAGCTGATGCATGTCACAGAAATGTCTTA
38083471 AACTAGCCCA
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
139 17 0.17
140 75 0.77
141 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (139 bp):
CATGTCCCAGACACGGTCTTACACTAGCTCGATCTCATGCCGATGCCATGTCCCAAACATGGTCT
TACACTGACTATCATATCATAGCTGATGCATGTCACAGAAATGTCTTACACTTGCTTACGTCTCG
AGGCCGATG
Found at i:38090972 original size:57 final size:57
Alignment explanation
Indices: 38090878--38091018 Score: 183
Period size: 57 Copynumber: 2.5 Consensus size: 57
38090868 TATCATATAA
* * * *
38090878 TAGGAGTACCAGTTCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGTGCTTAAT
1 TAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAAT
* * * *
38090935 TAGGATTACTAGTCCAGGCTAAATCCTTTCTCTAACATATGCTCAGAAGAGCTCAAT
1 TAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAAT
* * *
38090992 TAGAATTGCCAGTCCAAGCTAAATCCT
1 TAGGATTACCAGTCCAGGCTAAATCCT
38091019 ATCTATAATG
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 72 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (57 bp):
TAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAAT
Done.