Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 126 of 343
Found at i:42103964 original size:47 final size:47
Alignment explanation
Indices: 42103907--42104263 Score: 576
Period size: 47 Copynumber: 7.6 Consensus size: 47
42103897 TATTTGAATA
* *
42103907 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
42103954 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
42104001 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42104050 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42104097 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
42104144 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
42104191 AATGTGAAAGTGTATATATGTGATAAGG-CGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
42104237 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
42104264 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
46 43 0.15
47 204 0.70
49 45 0.15
50 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:42104164 original size:25 final size:25
Alignment explanation
Indices: 42104136--42104214 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
42104126 CGAATGGCCA
42104136 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
42104161 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
42104183 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
42104208 ATGTGAT
1 ATGTGAT
42104215 AAGGCGAATG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 15 0.38
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:42107476 original size:46 final size:46
Alignment explanation
Indices: 42107322--42107476 Score: 249
Period size: 46 Copynumber: 3.3 Consensus size: 46
42107312 CACATAAGTT
42107322 GATGCCATGTCTCAGACGTGTCTTACACTAGCTTATGTCTCGAGGTC
1 GATG-CATGTCTCAGACGTGTCTTACACTAGCTTATGTCTCGAGGTC
*
42107369 GATGCATGTC-CTAGACGTGTCTTACACTAGCTTACGTCTCGAGGTC
1 GATGCATGTCTC-AGACGTGTCTTACACTAGCTTATGTCTCGAGGTC
* * *
42107415 GATACATGTCACAGACGTGTCTTACACTGGCTTATGTCTCGAGGTC
1 GATGCATGTCTCAGACGTGTCTTACACTAGCTTATGTCTCGAGGTC
42107461 GATGCATGTCTCAGAC
1 GATGCATGTCTCAGAC
42107477 ATGTTGATCG
Statistics
Matches: 100, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
45 1 0.01
46 94 0.94
47 5 0.05
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (46 bp):
GATGCATGTCTCAGACGTGTCTTACACTAGCTTATGTCTCGAGGTC
Found at i:42107704 original size:13 final size:13
Alignment explanation
Indices: 42107686--42107714 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
42107676 GGTTGTTTAT
42107686 TAAACTAATTAAC
1 TAAACTAATTAAC
42107699 TAAACTAATTAAC
1 TAAACTAATTAAC
42107712 TAA
1 TAA
42107715 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:42115992 original size:13 final size:13
Alignment explanation
Indices: 42115974--42115999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42115964 GGTTGTTTAT
42115974 TAAACTAATTAAC
1 TAAACTAATTAAC
42115987 TAAACTAATTAAC
1 TAAACTAATTAAC
42116000 AAATTAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:42124074 original size:43 final size:42
Alignment explanation
Indices: 42123958--42124080 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 42
42123948 GAATTTTCTT
* *
42123958 TTACGTGTAAAACCATGTCTTGGAC-TTCGGCATCGTATCTGA
1 TTACATGTAAAACCATGTCTGGGACGTT-GGCATCGTATCTGA
* * * * * *
42124000 TTTCATGTAACACCCTGTCTGGGATAG-TGGCATCGATGTTTGA
1 TTACATGTAAAACCATGTCTGGGA-CGTTGGCATCG-TATCTGA
* *
42124043 TTACATGTAAGACCATGTCTGGGACGTTGGCATTGTAT
1 TTACATGTAAAACCATGTCTGGGACGTTGGCATCGTAT
42124081 ATGTTCTCTG
Statistics
Matches: 63, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (42 bp):
TTACATGTAAAACCATGTCTGGGACGTTGGCATCGTATCTGA
Found at i:42130052 original size:64 final size:66
Alignment explanation
Indices: 42129873--42130057 Score: 189
Period size: 64 Copynumber: 2.8 Consensus size: 66
42129863 TACAGATGTG
** * * *
42129873 TGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTA
1 TGTAGCTAGGTCACATGCGTGGTGAT-AGTGTACACCATGTGTACAAGAGAGCTAC-AGACATTA
42129938 TGA
64 TGA
* * * * *
42129941 TGTAGCTAGGTCACATGGGTGATAATATGTGTACACCTTGTAG-ACAAGAGAGCTAC-GAGA-TA
1 TGTAGCTAGGTCACATGCGTGGTGATA-GTGTACACCATGT-GTACAAGAGAGCTACAGACATTA
42130003 T-A
64 TGA
* *
42130005 TGTAGCTAGGTCCCATGCGTGGTGATGAGTGTTCACCATGTGTACAAGAGAGC
1 TGTAGCTAGGTCACATGCGTGGTGAT-AGTGTACACCATGTGTACAAGAGAGC
42130058 CAAACTATAT
Statistics
Matches: 98, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
63 1 0.01
64 44 0.45
65 4 0.04
66 3 0.03
67 1 0.01
68 44 0.45
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (66 bp):
TGTAGCTAGGTCACATGCGTGGTGATAGTGTACACCATGTGTACAAGAGAGCTACAGACATTATG
A
Found at i:42138090 original size:30 final size:30
Alignment explanation
Indices: 42138056--42138113 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
42138046 TTTTCGAGCA
* *
42138056 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTATCAAAGTT
42138086 TAGGGGCAAAATGGTCATTTTATCAAAG
1 TAGGGGCAAAATGGTCATTTTATCAAAG
42138114 ATGTGAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTATCAAAGTT
Found at i:42138674 original size:47 final size:47
Alignment explanation
Indices: 42138448--42138711 Score: 174
Period size: 47 Copynumber: 5.7 Consensus size: 47
42138438 TGTGTGAACT
* * * * *
42138448 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACA-GATGTGAGCC
* * * **
42138494 AGTGTAAGACCATGTCTGGGGCATGGCATCAGCATTGAAACGA-GT--GTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACT-ACA-GATGTGAGCC
* * * * *
42138542 AGTGTAAGA-CATGTCTGGAACAT-GCATTGGCCT-CGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCGACTAC-AGATGTGAGCC
* * *
42138588 AGTGTAAGA-CATGTCTGGGACAT-GCATAGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTAC-AGATG-TGAGCC
*
42138634 AGTGTAAGACCATATCTGGGACATGGCATCGACTTA-AGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TACAGATGTGAGCC
*
42138681 AGTGTAAGACCGTGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
42138712 GCACCTTACC
Statistics
Matches: 173, Mismatches: 29, Indels: 31
0.74 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
44 3 0.02
45 5 0.03
46 58 0.34
47 77 0.45
48 21 0.12
49 3 0.02
50 1 0.01
51 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTACAGATGTGAGCC
Found at i:42138705 original size:140 final size:140
Alignment explanation
Indices: 42138448--42138705 Score: 319
Period size: 140 Copynumber: 1.8 Consensus size: 140
42138438 TGTGTGAACT
* * *
42138448 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCAAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATAGGCCACATGATGAGAGCAAGTGTAAGACCATATCTGG
* * **
42138513 GGCATGGCATCAGCATTGAAACGAGTGTTAGTGTAAGACATGTCTGGAACATGCATTGGCCTCGA
66 GACATGGCATCAGCATTGAAACGAGAGCCAGTGTAAGACATGTCTGGAACATGCATTGGCCTCGA
42138578 GACGTAAGCC
131 GACGTAAGCC
* *
42138588 AGTGTAAGACATGTCTGGGACATGCATAGGCTACGA-GATGATAGTC-AGTGTAAGACCATATCT
1 AGTGTAAGACATGTCTGGGACATGCATAGGCCAC-ATGATGAGAG-CAAGTGTAAGACCATATCT
* * * *
42138651 GGGACATGGCATC-G-ACTT-AAGATGTGAGCCAGTGTAAGACCGTGTCTGGGACATG
64 GGGACATGGCATCAGCA-TTGAA-ACGAGAGCCAGTGTAAGA-CATGTCTGGAACATG
42138706 GCATCGGCAC
Statistics
Matches: 100, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
138 3 0.03
139 16 0.16
140 79 0.79
141 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATAGGCCACATGATGAGAGCAAGTGTAAGACCATATCTGG
GACATGGCATCAGCATTGAAACGAGAGCCAGTGTAAGACATGTCTGGAACATGCATTGGCCTCGA
GACGTAAGCC
Found at i:42139617 original size:42 final size:42
Alignment explanation
Indices: 42139537--42139623 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
42139527 GGGTAGAGAT
* * * ** *
42139537 ACGGTTGTGTGTCTCAGCCGTGTGAATGACGCGGCCCAGTAC
1 ACGGTCGTGTGTCTCAGCCGTGTGAAGGACACAACCCAGCAC
*
42139579 ACGGTCGTGTGTCTCAGCTGTGTGAAGGACACAACCCAGCAC
1 ACGGTCGTGTGTCTCAGCCGTGTGAAGGACACAACCCAGCAC
42139621 ACG
1 ACG
42139624 AGCGTTTAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (42 bp):
ACGGTCGTGTGTCTCAGCCGTGTGAAGGACACAACCCAGCAC
Found at i:42140515 original size:17 final size:17
Alignment explanation
Indices: 42140465--42140515 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
42140455 TGGAAACATG
*
42140465 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
* *
42140482 ATATTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
42140501 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
42140516 ATTTTGTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 14 0.50
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:42140515 original size:22 final size:23
Alignment explanation
Indices: 42140487--42140529 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
42140477 ATGCAATATT
42140487 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
42140509 AGATATGATTTTGTAATCTTA
1 AGATATGATTATGTAATCTTA
42140530 TAGATTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:42140534 original size:22 final size:23
Alignment explanation
Indices: 42140486--42140541 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
42140476 TATGCAATAT
*
42140486 TAGATATGA-TATGTAATCTTAG
1 TAGATATGATTTTGTAATCTTAG
*
42140508 AAGATATGATTTTGTAATCTTA-
1 TAGATATGATTTTGTAATCTTAG
*
42140530 TAGATTTGATTT
1 TAGATATGATTT
42140542 GTAGATACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (23 bp):
TAGATATGATTTTGTAATCTTAG
Found at i:42145654 original size:17 final size:17
Alignment explanation
Indices: 42145604--42145654 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
42145594 TAGACACATG
*
42145604 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
42145621 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
42145640 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
42145655 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:42145654 original size:22 final size:21
Alignment explanation
Indices: 42145626--42145683 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
42145616 ATGCAATCTT
*
42145626 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
42145647 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
42145670 AGATTTGATTTGTA
1 AGATATGATTTGTA
42145684 GATACCCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:42150769 original size:40 final size:40
Alignment explanation
Indices: 42150695--42150914 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
42150685 AAGTATCTTT
* * *
42150695 GGGATTTAG-CCGGATATAG-CAACTCGCAGAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
* **
42150734 GGGTCTTAGCCCGGATATAGTCACTAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
42150774 GGGATTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
42150814 GGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCCTTC
* * * *
42150857 GGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCCTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
42150897 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
42150915 CATCCGAATA
Statistics
Matches: 157, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 8 0.05
40 113 0.72
41 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:42150877 original size:83 final size:80
Alignment explanation
Indices: 42150707--42150914 Score: 258
Period size: 83 Copynumber: 2.6 Consensus size: 80
42150697 GATTTAGCCG
* * * **
42150707 GATATAG-CAACTCGCAGAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGCC
1 GATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
* *
42150771 TTCGGGATTTAGCCCG
65 TTCGGGACTTAGCCCA
*
42150787 GATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAAT
1 GATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAAT
42150851 GCCTTCGGGACTTAGCCCA
62 GCCTTCGGGACTTAGCCCA
* * *
42150870 GATATAGTAACTTGCACAAATGCCCTCGGGACTTAGCCCGGATAT
1 GATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
42150915 CATCCGAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
79 1 0.01
80 45 0.41
81 1 0.01
83 64 0.58
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (80 bp):
GATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCT
TCGGGACTTAGCCCA
Found at i:42154684 original size:24 final size:24
Alignment explanation
Indices: 42154656--42154780 Score: 164
Period size: 24 Copynumber: 5.2 Consensus size: 24
42154646 AAAGGCTATT
*
42154656 AGGAGAAGATTTAGGAGCTAATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
42154680 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
42154704 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
42154728 AGGA-AAGGATTTAGGAGCTGATAA
1 AGGAGAA-GATTTAGGAGCTGATAA
*
42154752 AGGA-AAGGATTTAGGAGCTGATCA
1 AGGAGAA-GATTTAGGAGCTGATAA
42154776 AGGAG
1 AGGAG
42154781 CAGGAGTTGG
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
23 1 0.01
24 92 0.99
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATAA
Found at i:42154737 original size:48 final size:48
Alignment explanation
Indices: 42154656--42154779 Score: 185
Period size: 48 Copynumber: 2.6 Consensus size: 48
42154646 AAAGGCTATT
* * * *
42154656 AGGAGAAGATTTAGGAGCTAATAAGGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAGGATTTAGGAGCTGATAAAGGAAAGGATTTAGGAGCTGATAA
*
42154704 GGGAGAGGATTTAGGAGCTGATAAAGGAAAGGATTTAGGAGCTGATAA
1 AGGAGAGGATTTAGGAGCTGATAAAGGAAAGGATTTAGGAGCTGATAA
* *
42154752 AGGAAAGGATTTAGGAGCTGATCAAGGA
1 AGGAGAGGATTTAGGAGCTGATAAAGGA
42154780 GCAGGAGTTG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.20
Consensus pattern (48 bp):
AGGAGAGGATTTAGGAGCTGATAAAGGAAAGGATTTAGGAGCTGATAA
Found at i:42155637 original size:16 final size:18
Alignment explanation
Indices: 42155608--42155647 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
42155598 AGTTTGTTTC
42155608 GGTAGTAGATTAA-TGT-
1 GGTAGTAGATTAATTGTA
42155624 GGTAGTA-ATATAATTGTA
1 GGTAGTAGAT-TAATTGTA
42155642 GGTAGT
1 GGTAGT
42155648 TCGAGCGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.10
16 10 0.48
17 3 0.14
18 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (18 bp):
GGTAGTAGATTAATTGTA
Found at i:42158928 original size:46 final size:46
Alignment explanation
Indices: 42158878--42159046 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
42158868 TGAGCATCCA
42158878 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
42158924 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
42158971 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-G
*
42159017 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
42159047 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 54 0.53
47 28 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:42159030 original size:93 final size:93
Alignment explanation
Indices: 42158871--42159041 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
42158861 GGATGGTTGA
*
42158871 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
42158936 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
42158964 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
42159028 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
42159042 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:42161996 original size:15 final size:15
Alignment explanation
Indices: 42161973--42162032 Score: 84
Period size: 15 Copynumber: 4.0 Consensus size: 15
42161963 GTATCGTATC
*
42161973 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
42161988 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * *
42162003 CTGGATTTCTCTATC
1 TTGGATTTCTTTATT
42162018 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
42162033 CGGTTTCCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.12, C:0.12, G:0.15, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:42164001 original size:46 final size:45
Alignment explanation
Indices: 42163945--42164120 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
42163935 TGGTTGAGCA
*
42163945 TCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
42163991 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
42164038 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
42164084 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
42164121 GCGGTTACAT
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:42164101 original size:93 final size:93
Alignment explanation
Indices: 42163942--42164112 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
42163932 GGATGGTTGA
* * **
42163942 GCATCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
42164007 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
42164035 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
42164100 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
42164113 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:42166690 original size:83 final size:82
Alignment explanation
Indices: 42166454--42166707 Score: 444
Period size: 81 Copynumber: 3.1 Consensus size: 82
42166444 GGCCGGCCAT
42166454 GAGCATGGGTGGACAAGATGTTATGGCCTAAAACATGTCAT-AACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGG-CTAAAACATGTCATAAACATGTTGGGGTAGTGCATT-T
42166518 GTAAGGATTAAT-AA-AAA
64 GTAAGGATTAATAAATAAA
42166535 GAGCATGGGTGGACAAGATGTTATGGCTAAAACATGTCATAAACATGTT-GGGTAGTGCATTTGT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAACATGTCATAAACATGTTGGGGTAGTGCATTTGT
42166599 AAGGATTAATAAATAAA
66 AAGGATTAATAAATAAA
42166616 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTTG
1 GAGCATGGGTGGACAAGATGTTATGGCT-AAAACATGTCATAAACATGTTGGGGTAGTGCATTTG
42166681 TAAGGATTAATAAATAAA
65 TAAGGATTAATAAATAAA
*
42166699 GGGCATGGG
1 GAGCATGGG
42166708 CAATAAAATT
Statistics
Matches: 167, Mismatches: 1, Indels: 8
0.95 0.01 0.05
Matches are distributed among these distances:
79 13 0.08
80 28 0.17
81 65 0.39
82 21 0.13
83 40 0.24
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (82 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAACATGTCATAAACATGTTGGGGTAGTGCATTTGT
AAGGATTAATAAATAAA
Found at i:42168036 original size:49 final size:47
Alignment explanation
Indices: 42167957--42168548 Score: 824
Period size: 47 Copynumber: 12.6 Consensus size: 47
42167947 ATTTTGAATA
*
42167957 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42168004 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42168053 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42168100 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
42168149 AATGTGAAAGTG--TATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
42168194 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGGCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42168243 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
42168290 AATGTGACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42168336 AATGTGAACA-TGTGTATGTGTGATAA-GCCGAATGGCCAATG-GATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
42168381 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
42168428 AATGTGAACA-TGCATATATGAGATAAGGCCGAATTGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
42168475 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
42168522 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
42168549 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 28, Indels: 26
0.90 0.05 0.05
Matches are distributed among these distances:
45 73 0.14
46 72 0.14
47 223 0.44
49 135 0.27
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:42168288 original size:22 final size:22
Alignment explanation
Indices: 42168261--42168334 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
42168251 CATGTGTATG
42168261 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
42168283 TGTGATGAATG-TGACAT-GCATATA
1 TGTGAT-AAGGCCGA-ATGGC-CA-A
*
42168307 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
42168329 TGTGAT
1 TGTGAT
42168335 GAATGTGAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
22 16 0.42
23 12 0.32
24 10 0.26
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:42171291 original size:14 final size:15
Alignment explanation
Indices: 42171267--42171319 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 15
42171257 GTATCTTGGG
42171267 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
42171282 TTTC-TTATTCTGGA
1 TTTCTTTATTCTGGA
*
42171296 TTTC--CA-TCTTGGA
1 TTTCTTTATTC-TGGA
42171309 TTTCTTTATTC
1 TTTCTTTATTC
42171320 GTTTCCTTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 9 0.28
14 14 0.44
15 5 0.16
16 2 0.06
ACGTcount: A:0.13, C:0.17, G:0.11, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:42174529 original size:93 final size:93
Alignment explanation
Indices: 42174370--42174840 Score: 647
Period size: 93 Copynumber: 5.1 Consensus size: 93
42174360 GAAATGATAG
* * *
42174370 TAAGGCCTAATGGCCGATGTG--GAATGTGAAAGTGTATATATAGTGATAGGGCCTAATGGTCGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGATAAGGCCTAATGGCCGA
*
42174433 TGTGATGAATGTGAAAGTGTATATACGTGA
65 TGTGATGAATGTGAAAGTGTATAT-TGTGA
* * * *
42174463 TAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTGTA-ATACGTGATAAGGCCTAATGGCTGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
42174527 GTGATGAATGTGAAAGTGTATAGTTGTTGA
66 GTGATGAATGTGAAAGTGTATA-TTG-TGA
* * *
42174557 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGAT-AGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
42174621 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATAT-TGTGA
* * * *
42174650 TAAGGCCTAATAGCCGATGTGAAGAAT-TGAAAGTGTATATGTGTGATAA-GCCTAATAGCCGAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
42174713 GTGATGAAT-TGTAAAGTG--TATTGTGGTA
66 GTGATGAATGTG-AAAGTGTATATTGT-G-A
42174741 TAAGGCCTAATAGCCGATGTGATGAAT-TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
42174805 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATAT-TGTGA
*
42174834 CAAGGCC
1 TAAGGCC
42174841 GAGTGGCCAA
Statistics
Matches: 342, Mismatches: 21, Indels: 30
0.87 0.05 0.08
Matches are distributed among these distances:
89 3 0.01
90 4 0.01
91 50 0.15
92 75 0.22
93 102 0.30
94 84 0.25
95 24 0.07
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (93 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATTGTGA
Found at i:42174698 original size:187 final size:184
Alignment explanation
Indices: 42174370--42174840 Score: 673
Period size: 187 Copynumber: 2.5 Consensus size: 184
42174360 GAAATGATAG
* *
42174370 TAAGGCCTAATGGCCGATGTG--GAATGTGAAAGTGTATATATAGTGATAGGGCCTAATGGTCGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGATA-GGCCTAATGGCCGA
* * **
42174433 TGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGT
64 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAAGAATGTGAAAGT
* * * *
42174498 GTAATACGTGATAAGGCCTAATGGCTGATGTGATGAA-TGTGAAAGTGTATAGTTGTTGA
129 GTAATACGTGATAA-GCCTAATAGCCGACGTGATGAATTGT-AAAGTGTATAG-TGGT-A
* * *
42174557 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGCCTAATAGCCGATG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATG
*
42174622 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGAAGAAT-TGAAAGTGT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAAGAATGTGAAAGTGT
** *
42174686 ATATGTGTGATAAGCCTAATAGCCGACGTGATGAATTGTAAAGTGTATTGTGGTA
131 A-ATACGTGATAAGCCTAATAGCCGACGTGATGAATTGTAAAGTGTATAGTGGTA
42174741 TAAGGCCTAATAGCCGATGTGATGAAT-TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGAT
*
42174805 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
65 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
42174841 GAGTGGCCAA
Statistics
Matches: 257, Mismatches: 22, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
183 19 0.07
184 76 0.30
185 3 0.01
186 39 0.15
187 95 0.37
188 6 0.02
189 19 0.07
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (184 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAAGAATGTGAAAGTGT
AATACGTGATAAGCCTAATAGCCGACGTGATGAATTGTAAAGTGTATAGTGGTA
Found at i:42174863 original size:47 final size:47
Alignment explanation
Indices: 42174370--42174840 Score: 649
Period size: 46 Copynumber: 10.1 Consensus size: 47
42174360 GAAATGATAG
*
42174370 TAAGGCCTAATGGCCGATGTG--GAATGTGAAAGTGTATATATAGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGA
* * * *
42174416 TAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
42174463 TAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTGTA-ATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
42174509 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAGT-TGTTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA-TATG-TGA
* *
42174557 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
42174604 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
42174650 TAAGGCCTAATAGCCGATGTGAAGAAT-TGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
42174696 TAA-GCCTAATAGCCGACGTGATGAAT-TGTAAAGTGTAT-TGTG-GTA
1 TAAGGCCTAATAGCCGATGTGATGAATGTG-AAAGTGTATATATGTG-A
42174741 TAAGGCCTAATAGCCGATGTGATGAAT-TGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
42174787 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
42174834 CAAGGCC
1 TAAGGCC
42174841 GAGTGGCCAA
Statistics
Matches: 392, Mismatches: 20, Indels: 25
0.90 0.05 0.06
Matches are distributed among these distances:
44 1 0.00
45 40 0.10
46 193 0.49
47 96 0.24
48 62 0.16
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:42175055 original size:37 final size:36
Alignment explanation
Indices: 42174999--42175076 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
42174989 CCGAGCTCTA
* * *
42174999 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCC-GGT
* *
42175036 AAGACCCTATAACTTCGTGTGGAGATTATGTCCGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
42175072 AAGAC
1 AAGAC
42175077 TTCGTAAAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 8 0.22
37 28 0.78
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
Found at i:42176952 original size:42 final size:42
Alignment explanation
Indices: 42176891--42176988 Score: 171
Period size: 42 Copynumber: 2.3 Consensus size: 42
42176881 TTGGTTTTCA
42176891 GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAG-TTG
*
42176934 GCACTAAGTG-GCGCGCAATAAGTGTTCACGGTTGTGAGTTG
1 GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAGTTG
42176975 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
42176989 GGCTTGAAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
41 13 0.25
42 30 0.57
43 10 0.19
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (42 bp):
GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAGTTG
Found at i:42177008 original size:29 final size:29
Alignment explanation
Indices: 42176973--42177046 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
42176963 GGTTGTGAGT
* *
42176973 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
42177002 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
42177031 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
42177047 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:42177419 original size:40 final size:40
Alignment explanation
Indices: 42177351--42177584 Score: 310
Period size: 40 Copynumber: 5.9 Consensus size: 40
42177341 TTGAATGATG
42177351 TCCGGGCTAAGT-CCG-AGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
42177389 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
*
42177429 TCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* * *
42177469 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* ** ** * * * *
42177509 TCCGTGCTAAACCCCGAAGAGCATTCGCGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* * *
42177549 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
42177585 CGTGTATTCG
Statistics
Matches: 173, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 12 0.07
39 3 0.02
40 158 0.91
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
Found at i:42181277 original size:140 final size:138
Alignment explanation
Indices: 42181025--42181543 Score: 819
Period size: 140 Copynumber: 3.7 Consensus size: 138
42181015 GAAATGATAG
* *
42181025 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGCCTAATAGCCGA
* *
42181090 TGTGATGAATGTGAAAGTGTATA--CGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
64 TGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
42181153 GTATATACGTGA
129 GTATAT--GTGA
* * *
42181165 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATAGCCGAT
42181230 GTGATGAATGTGAAAGTGTATATGTGTGAT-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
65 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
42181294 TATATGTGTGA
130 TATA--TGTGA
* *
42181305 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGCCTAATAGCCGATG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATAGCCGATG
*
42181370 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
*
42181435 ATGTGTGA
131 ATATGTGA
*
42181443 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATAGCCGAT
* *
42181508 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
65 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
42181544 GAGTGGCCAA
Statistics
Matches: 357, Mismatches: 15, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
138 62 0.17
139 130 0.36
140 159 0.45
141 5 0.01
142 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (138 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATAGCCGATG
TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
ATATGTGA
Found at i:42181309 original size:93 final size:93
Alignment explanation
Indices: 42181025--42181536 Score: 834
Period size: 93 Copynumber: 5.5 Consensus size: 93
42181015 GAAATGATAG
* * *
42181025 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG--TATATATGTGATAGGCCTAATAGCCGA
*
42181090 TGTGATGAATGTGAAAGTGTATA--CGTGA
64 TGTGATGAATGTGAAAGTGTATATGTGTGA
* * * *
42181118 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATAGCCGAT
42181183 GTGATGAATGTGAAAGTGTATATGTGTGA
65 GTGATGAATGTGAAAGTGTATATGTGTGA
*
42181212 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGCCTAATAGCCGATG
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATAGCCGATG
42181277 TGATGAATGTGAAAGTGTATATGTGTGA
66 TGATGAATGTGAAAGTGTATATGTGTGA
*
42181305 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGCCTAATAGCCGATG
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATAGCCGATG
42181370 TGATGAATGTGAAAGTGTATATGTGTGA
66 TGATGAATGTGAAAGTGTATATGTGTGA
*
42181398 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG--TATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATAGCCGAT
*
42181461 GTGATGAATGTGAAAGTGTATATATGTGA
65 GTGATGAATGTGAAAGTGTATATGTGTGA
* *
42181490 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
42181537 CAAGGCCGAG
Statistics
Matches: 402, Mismatches: 11, Indels: 11
0.95 0.03 0.03
Matches are distributed among these distances:
91 21 0.05
92 116 0.29
93 209 0.52
94 56 0.14
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (93 bp):
TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATAGCCGATG
TGATGAATGTGAAAGTGTATATGTGTGA
Found at i:42181572 original size:47 final size:47
Alignment explanation
Indices: 42181025--42181543 Score: 836
Period size: 47 Copynumber: 11.1 Consensus size: 47
42181015 GAAATGATAG
* *
42181025 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* *
42181074 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA--CGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* **
42181118 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
42181165 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
42181212 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
42181259 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
42181305 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
42181352 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
42181398 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG--TATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
42181443 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
42181490 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
42181537 CAAGGCC
1 TAAGGCC
42181544 GAGTGGCCAA
Statistics
Matches: 450, Mismatches: 13, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
44 5 0.01
45 82 0.18
46 94 0.21
47 234 0.52
48 34 0.08
49 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:42181762 original size:37 final size:37
Alignment explanation
Indices: 42181706--42181784 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
42181696 CCGAGCTCTA
* * *
42181706 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
42181743 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
42181780 AAGAC
1 AAGAC
42181785 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:42184815 original size:46 final size:45
Alignment explanation
Indices: 42184759--42184934 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
42184749 TGGTTGAGCA
*
42184759 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
42184805 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
42184852 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
42184898 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
42184935 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:42184915 original size:93 final size:93
Alignment explanation
Indices: 42184756--42184926 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
42184746 GGATGGTTGA
* * **
42184756 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
42184821 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
42184849 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
42184914 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
42184927 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:42188075 original size:46 final size:44
Alignment explanation
Indices: 42188025--42188197 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 44
42188015 TGGTTGAGCA
42188025 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *
42188071 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAGGAA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GGAAG
* *
42188118 TCTGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *
42188164 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
42188198 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 62 0.58
47 30 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:42194590 original size:24 final size:24
Alignment explanation
Indices: 42194557--42194654 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
42194547 AAGGCTTTCA
* *
42194557 GGAGAAGATTTAGGAGCTGATATG
1 GGAGAGGATTTAGGAGCTGATAAG
42194581 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
42194605 GGAGAGGATTTAAGAGCTGATAAA
1 GGAGAGGATTTAGGAGCTGATAAG
*
42194629 GGAGAGGGTTTAGGAGCTGATCAAG
1 GGAGAGGATTTAGGAGCTGAT-AAG
42194654 G
1 G
42194655 AGCAGGAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 63 0.95
25 3 0.05
ACGTcount: A:0.34, C:0.05, G:0.40, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:42196341 original size:33 final size:34
Alignment explanation
Indices: 42196264--42196344 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
42196254 TATGGGCCAT
* *
42196264 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCACAGTTC
* * **
42196298 AATGTAATCTGAA-AA-GGGCTCTGGCACAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCACAGT-TC
42196331 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
42196345 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCACAGTTC
Found at i:42199162 original size:47 final size:48
Alignment explanation
Indices: 42198928--42199199 Score: 163
Period size: 47 Copynumber: 5.8 Consensus size: 48
42198918 GTCATTCGTG
* * **
42198928 TGTGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCAT-TAGCCATATTA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTATAAGA
* * * * *
42198974 TGAGAGCCAGTGTAAGACCATGTCTGGTG-CATGGCATTG-GTATTAACA
1 TGTGAGCTAGTGTAAGACCATGTCTGG-GACATGGCATCGACTA-TAAGA
*** * * * * *
42199022 CAAGTGCTACTGTAAGA-CATGTCTGAGACAT-GCATCGGCCTCT-AGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTATAAGA
* * * * *
42199068 CGTAAGCTAGTGTAAGA-CATGTCTGGGACAT-CCATCTACTATGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTATAAGA
* *
42199114 TGAT-AGTTAGTGTAAGACCATGTTTGGGACATGGCATCGACT-TAAGA
1 TG-TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTATAAGA
* ** *
42199161 TGTGAGCCAGTGTAAGACTGTGTCTAGGACATGGCATCG
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
42199200 GCCCTTACCC
Statistics
Matches: 174, Mismatches: 39, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
45 3 0.02
46 68 0.39
47 75 0.43
48 28 0.16
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTATAAGA
Found at i:42202685 original size:22 final size:22
Alignment explanation
Indices: 42202643--42202686 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
42202633 AATTATTTAC
* *
42202643 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
42202665 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
42202687 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:42202987 original size:40 final size:40
Alignment explanation
Indices: 42202913--42203134 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
42202903 AACCCAAGTA
* * *
42202913 CCTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
42202952 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
42202992 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
42203032 TCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
42203072 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
42203112 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
42203135 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 153 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:42211504 original size:53 final size:54
Alignment explanation
Indices: 42211417--42211624 Score: 175
Period size: 53 Copynumber: 3.9 Consensus size: 54
42211407 TTCCTTTTTA
* ** * * *
42211417 AACTTACCATTGCCATGTATTGACAAGGTTTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG
* * * * * *
42211470 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTTCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG
** * * * * * * * *
42211524 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTATCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG
* * *
42211579 AACTTACCAATGCTATGCCTTGGCATGGTCTTACTTGGTATCCTTA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTA
42211625 AACCCTAATG
Statistics
Matches: 120, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG
Found at i:42217272 original size:53 final size:54
Alignment explanation
Indices: 42217204--42217411 Score: 195
Period size: 53 Copynumber: 3.9 Consensus size: 54
42217194 TTCCTTTTTA
* * *
42217204 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG
* * * * * *
42217257 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTTCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG
** * ** * * * * *
42217311 TAGTTTATCAATGCCATATCTTGACATGGTCTTACATGAT-TCTTTTATCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTACCTTATAG
* *
42217366 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTTA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTA
42217412 AACCCTAATG
Statistics
Matches: 122, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
53 46 0.38
54 37 0.30
55 39 0.32
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG
Found at i:42228619 original size:34 final size:33
Alignment explanation
Indices: 42228565--42228662 Score: 117
Period size: 34 Copynumber: 2.9 Consensus size: 33
42228555 TTTGCATCTT
42228565 TGATACT-ATACTGAATTGGGCTAAGGCCCACAC
1 TGATACTGATACTGAA-TGGGCTAAGGCCCACAC
* *
42228598 TGATACTGGTACTGTAATGGGCTAGGGCCCACAC
1 TGATACTGATACTG-AATGGGCTAAGGCCCACAC
* **
42228632 TGATATTGCCACTGATATGGGCTAAGGCCCA
1 TGATACTGATACTGA-ATGGGCTAAGGCCCA
42228663 AACCATTTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
33 8 0.14
34 46 0.82
35 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (33 bp):
TGATACTGATACTGAATGGGCTAAGGCCCACAC
Found at i:42232444 original size:30 final size:30
Alignment explanation
Indices: 42232410--42232470 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
42232400 ACCTTAACTC
42232410 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
42232440 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
42232470 A
1 A
42232471 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:42246846 original size:93 final size:93
Alignment explanation
Indices: 42246716--42246885 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
42246706 CCATAAGTGT
* * *
42246716 ACTCAGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGGCTCAACTCAACG
1 ACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
42246781 AGCTCGGATGCCTAGTTACATCTCTCGA
66 AGCTCGGATGCCTAGTTACATCTCTCGA
* *
42246809 ACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 ACTCAGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
42246873 GAGTTCGGATGCC
65 GAGCTCGGATGCC
42246886 CAAATATCCT
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
ACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTCGA
Found at i:42246881 original size:46 final size:45
Alignment explanation
Indices: 42246706--42246880 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
42246696 TGTAACCCGC
* * * *
42246706 CCATAAGTGTACTCAGACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
42246752 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
42246798 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
42246845 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
42246881 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 63 0.60
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:42246900 original size:46 final size:44
Alignment explanation
Indices: 42246757--42246900 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
42246747 CGCATCCATA
* * *
42246757 AGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
42246806 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
42246849 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
42246896 AGTGA
1 AGTGA
42246901 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 27 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:42249073 original size:46 final size:46
Alignment explanation
Indices: 42249021--42249284 Score: 422
Period size: 46 Copynumber: 5.7 Consensus size: 46
42249011 ATCCATAGTG
* * * *
42249021 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
42249067 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
42249113 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
42249159 TCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
42249205 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
42249251 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
42249285 AGAGCACACT
Statistics
Matches: 205, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 201 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:42263499 original size:27 final size:27
Alignment explanation
Indices: 42263469--42263614 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
42263459 TGGATAAGTT
* *
42263469 GTAGAATTACCAAAATACCCCTGTAGA
1 GTAGAATTACCGAAATACCCCTGTAGG
*
42263496 GTAGAATTACCTAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
42263523 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
42263550 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
42263577 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
42263604 GTAAAATTACC
1 GTAGAATTACC
42263615 ATTTTGCCCT
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:42263624 original size:27 final size:28
Alignment explanation
Indices: 42263594--42263656 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
42263584 TACCGAGATA
*
42263594 CCCTTGTGGGGTAAAATTACCATTTTG-
1 CCCTTGTGGGGTAAAATGACCATTTTGC
* * *
42263621 CCCTTAG-GGTGTTAAATGACTATTTTGC
1 CCCTT-GTGGGGTAAAATGACCATTTTGC
42263649 CCCTTGTG
1 CCCTTGTG
42263657 CGTAAATGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (28 bp):
CCCTTGTGGGGTAAAATGACCATTTTGC
Found at i:42264948 original size:17 final size:17
Alignment explanation
Indices: 42264898--42264955 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 17
42264888 AGGTGAGAAG
42264898 TAAAAGTTTAGGGGAAAAA
1 TAAAAGTTTAGGGG--AAA
*
42264917 TAAAAAGTTTTGGGG-AA
1 T-AAAAGTTTAGGGGAAA
42264934 TAAAAGTTTGAGGGGAAA
1 TAAAAGTTT-AGGGGAAA
42264952 TAAA
1 TAAA
42264956 TAGGGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 7 0.21
18 6 0.18
19 1 0.03
20 12 0.35
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (17 bp):
TAAAAGTTTAGGGGAAA
Found at i:42265264 original size:21 final size:21
Alignment explanation
Indices: 42265230--42265270 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
42265220 GGGGGAAAGT
*
42265230 GGGAAGAAGTAAAAGTTTTGA
1 GGGAAGAAGTAAAAGGTTTGA
42265251 GGGAA-AAGTAAAAAGGTTTG
1 GGGAAGAAGT-AAAAGGTTTG
42265271 GGAATTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (21 bp):
GGGAAGAAGTAAAAGGTTTGA
Found at i:42265412 original size:18 final size:18
Alignment explanation
Indices: 42265386--42265420 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
42265376 AATTGAGTTG
*
42265386 ACTCGAATAACTCGATTA
1 ACTCAAATAACTCGATTA
*
42265404 ACTCAAATAACTTGATT
1 ACTCAAATAACTCGATT
42265421 CGTTTAACTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:42265553 original size:27 final size:26
Alignment explanation
Indices: 42265509--42265559 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
42265499 CTCGCTGCAA
*
42265509 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
42265536 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
42265560 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:42265651 original size:27 final size:26
Alignment explanation
Indices: 42265599--42265657 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
42265589 CCACATATAT
*
42265599 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
42265625 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
42265652 ATATCT
1 ATATCT
42265658 AGTAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:42268015 original size:13 final size:13
Alignment explanation
Indices: 42267997--42268021 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42267987 GGTTTGTTTA
42267997 TTAAACTAATTAT
1 TTAAACTAATTAT
42268010 TTAAACTAATTA
1 TTAAACTAATTA
42268022 ACGGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:42271728 original size:51 final size:51
Alignment explanation
Indices: 42271668--42271907 Score: 279
Period size: 51 Copynumber: 4.8 Consensus size: 51
42271658 ATTAGTCGCA
* *
42271668 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
*
42271719 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
* * *** * ** * *
42271770 TGTGTAGTAATAACTGCAGGCTACTACATGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
* * * * * * *
42271820 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-TTTG-TCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
42271869 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
42271908 GCTTTGGCTA
Statistics
Matches: 162, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 38 0.23
50 43 0.27
51 81 0.50
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
Found at i:42271833 original size:101 final size:99
Alignment explanation
Indices: 42271714--42271894 Score: 263
Period size: 101 Copynumber: 1.8 Consensus size: 99
42271704 ATAACTTCGA
* * *
42271714 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGCGTACCCGATAA-TTCG-TCACATGTGTAGTA
42271779 ATAACTGCAGGCTACTACATGTATCAGATGGTTAGG
64 ATAACTGCAGGCTACTACATGTATCAGATGGTTAGG
* * * * *
42271815 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTTGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGCGTACCCGATAATTCGTCACATGTGTAGTAAT
*
42271880 AAGTGCAGGCTACTA
66 AACTGCAGGCTACTA
42271895 TGCGTACCAG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 27 0.38
100 3 0.04
101 41 0.58
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGCGTACCCGATAATTCGTCACATGTGTAGTAAT
AACTGCAGGCTACTACATGTATCAGATGGTTAGG
Found at i:42278411 original size:28 final size:28
Alignment explanation
Indices: 42278346--42278496 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
42278336 GAGATTGGCG
* * * *
42278346 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
42278375 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
42278403 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
42278431 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
42278459 CTAAGTGTACGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
42278486 CTGAGTGTGCG
1 CTAAGTGTGCG
42278497 GACTTAATAT
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 23 0.21
28 73 0.66
29 15 0.14
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:42287903 original size:42 final size:41
Alignment explanation
Indices: 42287790--42287908 Score: 103
Period size: 43 Copynumber: 2.8 Consensus size: 41
42287780 CGGAAAGCTC
* * ***
42287790 ATACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCC-ATGTCCCAGACATGGTCTTACACAAAATCAA
* * * * *
42287832 ATATTGATGCCACTATCCTAGAAAAGGTCTTACACAAAATCAA
1 ATA-CGATGCCA-TGTCCCAGACATGGTCTTACACAAAATCAA
*
42287875 ATACGATGCCGATGTCCCAGACATGGTCTCACAC
1 ATACGATGCC-ATGTCCCAGACATGGTCTTACAC
42287909 GTAAGTCATA
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
42 27 0.47
43 31 0.53
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (41 bp):
ATACGATGCCATGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:42290736 original size:20 final size:20
Alignment explanation
Indices: 42290711--42290751 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
42290701 TTTTAACAAA
42290711 AATCAAGAAAATATGCATAT
1 AATCAAGAAAATATGCATAT
42290731 AATCAAGAAAATATGCATAT
1 AATCAAGAAAATATGCATAT
42290751 A
1 A
42290752 GTGAGATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.24
Consensus pattern (20 bp):
AATCAAGAAAATATGCATAT
Found at i:42291131 original size:42 final size:42
Alignment explanation
Indices: 42291085--42291168 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
42291075 TTATTTATTT
*
42291085 TATTTTTAAATATATATTTATCATTTAAATTTATGGTTTCAG
1 TATTTTTAAATATATATTTATCATCTAAATTTATGGTTTCAG
*
42291127 TATTTTTAAATATATATTTATCATCTAAATTTGTGGTTTCAG
1 TATTTTTAAATATATATTTATCATCTAAATTTATGGTTTCAG
42291169 ACGCTGATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.32, C:0.06, G:0.08, T:0.54
Consensus pattern (42 bp):
TATTTTTAAATATATATTTATCATCTAAATTTATGGTTTCAG
Found at i:42297626 original size:42 final size:42
Alignment explanation
Indices: 42297567--42297646 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
42297557 CGGCATCATG
*
42297567 CTAGTAAAGTCATAACACTATGGACAGATTGCACTTATCGTT
1 CTAGTAAAGTCATAACACTATGGACAAATTGCACTTATCGTT
* *
42297609 CTAGTAAAGTCGTAACACTATTGACAAATTGCACTTAT
1 CTAGTAAAGTCATAACACTATGGACAAATTGCACTTAT
42297647 TGTCGCGACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (42 bp):
CTAGTAAAGTCATAACACTATGGACAAATTGCACTTATCGTT
Found at i:42299858 original size:100 final size:100
Alignment explanation
Indices: 42299685--42299870 Score: 345
Period size: 100 Copynumber: 1.9 Consensus size: 100
42299675 GGCCTTGCAA
*
42299685 GGGGCACTTTGGTGTTCGAGCATCATAGTGGATATAAGATAAGACAATATTGATGGCTTTAAGGT
1 GGGGCACTTTGGTGTTCGAGCATCATAGTGGATATAAGATAAGACAATATTGATGGCTTTAAAGT
42299750 TCCACAGAGCAACACCACGACAATAGTCCTTATAG
66 TCCACAGAGCAACACCACGACAATAGTCCTTATAG
*
42299785 GGGGCACTTTGGTGTTCGAGCATCATGGTGGATATAAGATAAGACAATATTGATGGCTTTAAAGT
1 GGGGCACTTTGGTGTTCGAGCATCATAGTGGATATAAGATAAGACAATATTGATGGCTTTAAAGT
*
42299850 TTCACAGAGCAACACCACGAC
66 TCCACAGAGCAACACCACGAC
42299871 GACAGTCAAC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (100 bp):
GGGGCACTTTGGTGTTCGAGCATCATAGTGGATATAAGATAAGACAATATTGATGGCTTTAAAGT
TCCACAGAGCAACACCACGACAATAGTCCTTATAG
Found at i:42302467 original size:51 final size:50
Alignment explanation
Indices: 42302371--42302511 Score: 219
Period size: 51 Copynumber: 2.8 Consensus size: 50
42302361 TTAATAAAGT
* *
42302371 CATGCATTCTGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
1 CATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCATAAATAATGA
*
42302421 CATGCATTATGCAACTCTCATGATTAGTTAAGTTTGCATCATAAATAATGA
1 CATGCATTATGTAACTCTCATG-TTAGTTAAGTTTGCATCATAAATAATGA
* *
42302472 CATGCATTACGTAACTCACATGTTAGTTAAAGTTTGCATC
1 CATGCATTATGTAACTCTCATGTTAGTT-AAGTTTGCATC
42302512 TTTAAATTAA
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
50 26 0.31
51 57 0.69
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (50 bp):
CATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCATAAATAATGA
Found at i:42304722 original size:31 final size:31
Alignment explanation
Indices: 42304687--42304756 Score: 131
Period size: 31 Copynumber: 2.2 Consensus size: 31
42304677 GTAGTTTAAG
42304687 TTATTTAGGAGTTTTATATCAATAAGAAAGT
1 TTATTTAGGAGTTTTATATCAATAAGAAAGT
42304718 TTATTTAGGAGTTTTATATCAATAAGAAAGT
1 TTATTTAGGAGTTTTATATCAATAAGAAAGT
42304749 TTAATTTA
1 TT-ATTTA
42304757 AAACAACTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 33 0.87
32 5 0.13
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.44
Consensus pattern (31 bp):
TTATTTAGGAGTTTTATATCAATAAGAAAGT
Found at i:42311567 original size:29 final size:29
Alignment explanation
Indices: 42311529--42311584 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
42311519 TAAGCCTCCA
*
42311529 TATTGTATTTATTAAGTTTTATATTTTTTG
1 TATTGTATTTATT-ACTTTTATATTTTTTG
*
42311559 TATT-TATTTATTCCTTTTATATTTTT
1 TATTGTATTTATTACTTTTATATTTTT
42311585 AAGTATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 12 0.50
29 8 0.33
30 4 0.17
ACGTcount: A:0.21, C:0.04, G:0.05, T:0.70
Consensus pattern (29 bp):
TATTGTATTTATTACTTTTATATTTTTTG
Found at i:42316655 original size:20 final size:19
Alignment explanation
Indices: 42316632--42316671 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
42316622 GCTTTAACTC
42316632 CTTTTCATTTTCTTTTATTT
1 CTTTTCA-TTTCTTTTATTT
* *
42316652 CTTTTTATTTCTTTTTTTT
1 CTTTTCATTTCTTTTATTT
42316671 C
1 C
42316672 CCCCTTCCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (19 bp):
CTTTTCATTTCTTTTATTT
Found at i:42316657 original size:10 final size:10
Alignment explanation
Indices: 42316640--42316671 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
42316630 TCCTTTTCAT
42316640 TTTC-TTTTA
1 TTTCTTTTTA
42316649 TTTCTTTTTA
1 TTTCTTTTTA
42316659 TTTCTTTTT-
1 TTTCTTTTTA
42316668 TTTC
1 TTTC
42316672 CCCCTTCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTCTTTTTA
Found at i:42320703 original size:18 final size:18
Alignment explanation
Indices: 42320680--42320716 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
42320670 TCGCATCTTT
*
42320680 TTTCAACTAATAATCCCA
1 TTTCAACGAATAATCCCA
*
42320698 TTTCAACGAATTATCCCA
1 TTTCAACGAATAATCCCA
42320716 T
1 T
42320717 CCATAATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (18 bp):
TTTCAACGAATAATCCCA
Found at i:42332503 original size:19 final size:20
Alignment explanation
Indices: 42332479--42332516 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
42332469 TGGTACACCA
42332479 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
42332498 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
42332517 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:42332855 original size:93 final size:93
Alignment explanation
Indices: 42332745--42332915 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
42332735 GCCCCTAAGT
* *
42332745 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
42332810 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
42332838 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
42332903 CGAGTTCGGATGC
66 CGAGTTCGGATGC
42332916 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:42332912 original size:46 final size:46
Alignment explanation
Indices: 42332740--42332912 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
42332730 AACCCGCCCC
* * * *
42332740 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
42332786 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
42332834 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
42332879 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
42332913 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:42335001 original size:42 final size:42
Alignment explanation
Indices: 42334948--42335067 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
42334938 ACATAGTAAT
* * *
42334948 ATACCAATGCCATATCCCAGATATGGTCTTACATGAGATCTC
1 ATACCGATGCCATATCCCAGATATGGTCTTACACGAAATCTC
* * ** * * *
42334990 ATATCGATGCCAATAGCCCATCTGTGGCCTTACACGAAATCTT
1 ATACCGATGCC-ATATCCCAGATATGGTCTTACACGAAATCTC
42335033 ATACCGATGCCATATCCCAGATATGGTCTTACACG
1 ATACCGATGCCATATCCCAGATATGGTCTTACACG
42335068 TAAACTCTAA
Statistics
Matches: 61, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (42 bp):
ATACCGATGCCATATCCCAGATATGGTCTTACACGAAATCTC
Found at i:42342303 original size:28 final size:28
Alignment explanation
Indices: 42342271--42342398 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
42342261 ATAGTAAGTC
*
42342271 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
42342299 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
42342328 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
42342356 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
42342385 CGCACACTTAGTGC
1 CGCACACTTAGTGC
42342399 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:42342361 original size:57 final size:57
Alignment explanation
Indices: 42342270--42342398 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
42342260 TATAGTAAGT
*
42342270 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
42342327 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
42342384 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
42342399 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:42346608 original size:40 final size:40
Alignment explanation
Indices: 42346553--42346632 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
42346543 TTAAGCCATG
* * *
42346553 AAAGTTTCTTTTCTCTCTCCTAGGGTTTCCATGTATTTTA
1 AAAGTTCCTTCTCTCTCTCCTAGAGTTTCCATGTATTTTA
42346593 AAAGTTCCTTCTCTCTCTCCTAGAGTTTCCATGTATTTTA
1 AAAGTTCCTTCTCTCTCTCCTAGAGTTTCCATGTATTTTA
42346633 GGTTGAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.19, C:0.23, G:0.11, T:0.47
Consensus pattern (40 bp):
AAAGTTCCTTCTCTCTCTCCTAGAGTTTCCATGTATTTTA
Found at i:42348399 original size:28 final size:29
Alignment explanation
Indices: 42348362--42348427 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
42348352 TAAAGTGATT
* *
42348362 TTTGACAAAAATGTCAATT-AGGGATTAA
1 TTTGAGAAAAATGTAAATTGAGGGATTAA
* *
42348390 TTTGAGAAAAGTGTAAATTGAGGGGTTAA
1 TTTGAGAAAAATGTAAATTGAGGGATTAA
* *
42348419 ATTGTGAAA
1 TTTGAGAAA
42348428 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.32
Consensus pattern (29 bp):
TTTGAGAAAAATGTAAATTGAGGGATTAA
Found at i:42348990 original size:44 final size:42
Alignment explanation
Indices: 42348913--42349022 Score: 114
Period size: 44 Copynumber: 2.5 Consensus size: 42
42348903 AGCTTTGGCT
* * *
42348913 ATATGTGGCACTAAGTGTGCGATACTAAGATAGCTTCTGTTTA
1 ATATGTGACACTAAGTGTGCGATACTAAGATAGCTTCAG-CTA
**
42348956 ATATGATGACACTAAGTGTGCGATA-TCATTATAGCTTCAGCTA
1 ATATG-TGACACTAAGTGTGCGATACT-AAGATAGCTTCAGCTA
*
42348999 ATCATTTTGACACTAAGTGTGCGA
1 AT-A-TGTGACACTAAGTGTGCGA
42349023 GTTCCTTGAG
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
43 10 0.18
44 46 0.81
45 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
ATATGTGACACTAAGTGTGCGATACTAAGATAGCTTCAGCTA
Found at i:42353862 original size:30 final size:30
Alignment explanation
Indices: 42353828--42353889 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
42353818 TTCCCGAGCC
42353828 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
* * *
42353858 TAGGGGCAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
42353888 TA
1 TA
42353890 AGTTAAGGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGAAAAAGTT
Found at i:42354671 original size:68 final size:66
Alignment explanation
Indices: 42354599--42354765 Score: 169
Period size: 67 Copynumber: 2.5 Consensus size: 66
42354589 CATCATGTGT
* * * *
42354599 ACAAGAGAGCTACAAGACATTATGATATAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATATAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
42354662 TGTAG
62 TGTAG
** * *
42354667 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTACCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATATAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
42354732 AG
65 AG
* * *
42354734 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTC
1 ACAAGAGAGCTACGACATATATATAGCTAGGTC
42354766 ATATGGGTGG
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
64 24 0.28
65 3 0.04
66 13 0.15
67 32 0.38
68 13 0.15
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATATAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:42364102 original size:43 final size:42
Alignment explanation
Indices: 42364007--42364119 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
42363997 TTACATATGG
* * *
42364007 ATGCCACTGTCCCAGACAGGGTCTTACACGAAACCGATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAACC-ATTAACA
* ** *
42364050 ATGCTAATGTCTTAGACATGGTCTTACACGAAATC-TTAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAACCATT-A-ACA
42364093 ATGCCAATGTCCCAGACAT-GTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
42364120 TGCAATCACA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 2 0.03
42 9 0.16
43 47 0.81
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAACCATTAACA
Found at i:42371472 original size:67 final size:65
Alignment explanation
Indices: 42371273--42371456 Score: 180
Period size: 67 Copynumber: 2.8 Consensus size: 65
42371263 ATATAGTTCG
* * * * * *
42371273 GCTCTCTTGTAC-ACATGGTG-AACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCG
1 GCTCTCTTGT-CTACATGGTGCTACACAT-AGAACCACCCATGCGACCTAGCTACATATATCCCG
42371334 TA
64 TA
* * * *
42371336 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG--CTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCG
42371401 TA
64 TA
* * *
42371403 GCTCTCTTGTCTACATGGTG-TACACATAGTATCACCCATTCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGCTACACATAGAACCACCCATGCGACCTAGCTACAT
42371457 CATAATGTCT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 27 0.27
66 22 0.22
67 31 0.31
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.29
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGCTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:42372224 original size:30 final size:30
Alignment explanation
Indices: 42372189--42372249 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
42372179 CCCTTAACTC
*
42372189 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
42372219 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
42372249 A
1 A
42372250 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:42376409 original size:79 final size:82
Alignment explanation
Indices: 42376298--42376482 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
42376288 GCTACTCGTT
* * *
42376298 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
42376361 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
42376378 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
42376441 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
42376458 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
42376483 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:42376482 original size:40 final size:40
Alignment explanation
Indices: 42376279--42376482 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
42376269 CGGAATTTAA
** *
42376279 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
42376319 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
42376359 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
42376398 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
42376438 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
42376478 CCGGA
1 CCGGA
42376483 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:42387521 original size:27 final size:26
Alignment explanation
Indices: 42387465--42387521 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
42387455 CAACCTTAAC
* *
42387465 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
42387491 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
42387518 CCTA
1 CCTA
42387522 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:42388794 original size:18 final size:17
Alignment explanation
Indices: 42388746--42388797 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
42388736 CAGCTATAGA
42388746 GAAAAAGAAGAAGAAGAG
1 GAAAAAGAAGAAG-AGAG
* *
42388764 GAAATAGATGAAGAGAG
1 GAAAAAGAAGAAGAGAG
42388781 GAGAAAAGAAGAAGAGA
1 GA-AAAAGAAGAAGAGA
42388798 AAAAAATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 6 0.21
18 23 0.79
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.04
Consensus pattern (17 bp):
GAAAAAGAAGAAGAGAG
Found at i:42389820 original size:15 final size:15
Alignment explanation
Indices: 42389783--42389811 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
42389773 CTTTCCTATC
42389783 TAATAATAATAATTA
1 TAATAATAATAATTA
42389798 TAATAATAATAATT
1 TAATAATAATAATT
42389812 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:42389923 original size:17 final size:19
Alignment explanation
Indices: 42389901--42389946 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
42389891 ACATACATAC
42389901 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
42389918 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
42389937 AATACTAATT
1 AATAATAATT
42389947 AAAATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:42395172 original size:23 final size:22
Alignment explanation
Indices: 42395120--42395172 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
42395110 TCCACGTCTT
*
42395120 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
42395142 -TTCATTTTCTATTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
42395165 TTTCTTTT
1 TTTCTTTT
42395173 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.11, C:0.17, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:42400950 original size:20 final size:21
Alignment explanation
Indices: 42400908--42400950 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
42400898 GTTTTCATTA
*
42400908 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
42400929 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
42400949 TT
1 TT
42400951 TGTTAAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:42402684 original size:31 final size:31
Alignment explanation
Indices: 42402646--42402707 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
42402636 GAGACACAAG
**
42402646 CGTGTGTCTCAACTGTGTGTGATACATGGTC
1 CGTGTGTCTCAACCATGTGTGATACATGGTC
* *
42402677 CGTGTGTCTTAGCCATGTGTGATACATGGTC
1 CGTGTGTCTCAACCATGTGTGATACATGGTC
42402708 AGGTTACACG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.16, C:0.19, G:0.29, T:0.35
Consensus pattern (31 bp):
CGTGTGTCTCAACCATGTGTGATACATGGTC
Found at i:42406084 original size:47 final size:47
Alignment explanation
Indices: 42406030--42406125 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
42406020 GTTGAATTTA
* *
42406030 AAGCTTGTTAAATTTGCTCTTAATATTTCCGAATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGAAGAAGTTACTTAGTT
* *
42406077 AAGCTTGTTAAATTTGCCCTTATTATTTCCGGAGAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGAAGAAGTTACTTAGTT
42406124 AA
1 AA
42406126 AGAAAATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.43
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCGAAGAAGTTACTTAGTT
Found at i:42407002 original size:45 final size:44
Alignment explanation
Indices: 42406947--42407109 Score: 215
Period size: 45 Copynumber: 3.7 Consensus size: 44
42406937 TTATTCATGC
42406947 CTTTGAGCCTAGCAGGCTATAATACCGGTGAGATACTATTCGGG
1 CTTTGAGCCTAGCAGGCTATAATACCGGTGAGATACTATTCGGG
* *
42406991 CCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATACTATTCGGG
1 -CTTTGAGCCTAGCAGGCTATAATACCGGTGAGATACTATTCGGG
* *
42407036 CTTTCGAGCCTAGCACGCTATAATACCGGTGAAATGA-TA-TCGGG
1 CTTT-GAGCCTAGCAGGCTATAATACCGGTGAGAT-ACTATTCGGG
* * *
42407080 CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 CTTTGAGCCTAGCAGGCTATAATACCGGTGA
42407110 ATGAATTCAG
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
42 10 0.09
43 13 0.12
44 12 0.11
45 70 0.66
46 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (44 bp):
CTTTGAGCCTAGCAGGCTATAATACCGGTGAGATACTATTCGGG
Found at i:42413674 original size:47 final size:47
Alignment explanation
Indices: 42413621--42413713 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
42413611 GAATTTAAAA
*
42413621 CTTGTTAAATTTGCTCTTAATATTT-TCGGATAAGTTACTTAGTTAAG
1 CTTGTTAAATTTGCCCTTAATATTTCT-GGATAAGTTACTTAGTTAAG
*
42413668 CTTGTTAAATTTTCCCTTAATATTTCTGGATAAGTTACTTAGTTAA
1 CTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTTAA
42413714 AGTAAATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.47
Consensus pattern (47 bp):
CTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTTAAG
Found at i:42414588 original size:45 final size:44
Alignment explanation
Indices: 42414524--42414695 Score: 215
Period size: 45 Copynumber: 3.9 Consensus size: 44
42414514 CGCACAGTAT
42414524 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
42414569 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
** ** *
42414614 TATTTAGGCTTTCGAGCCTAGCAGGCTATAATGCTAGTGAAATGA-
1 TATTCGGGCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
42414659 TA-TCGGGCTTCGAGCCTAGCAGGCGA-AATGTCGGTGA
1 TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
42414696 ATGAATTTAG
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
42 8 0.07
43 14 0.12
44 10 0.09
45 80 0.71
46 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (44 bp):
TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:42420525 original size:47 final size:47
Alignment explanation
Indices: 42420467--42420676 Score: 321
Period size: 47 Copynumber: 4.5 Consensus size: 47
42420457 ATTCAGCCAA
*
42420467 GAAAGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
42420514 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
42420561 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
42420608 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
42420655 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
42420677 TCCCGAAGGG
Statistics
Matches: 149, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 149 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:42420851 original size:37 final size:37
Alignment explanation
Indices: 42420795--42420873 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
42420785 CCGAGCTCTA
* *
42420795 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
42420832 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
42420869 AAGAC
1 AAGAC
42420874 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:42431641 original size:40 final size:40
Alignment explanation
Indices: 42431604--42431788 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
42431594 GCTACTCGTT
* *
42431604 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
42431644 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
42431684 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
42431723 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
42431764 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
42431789 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 75 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:42431715 original size:79 final size:80
Alignment explanation
Indices: 42431604--42431786 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
42431594 GCTACTCGTT
* ** *
42431604 CAAACGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGAAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
42431667 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
42431684 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
42431748 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
42431764 CAAAGCCTTCGGGACTTAGCCCG
1 CAAAGCCTTCGGGACTTAGCCCG
42431787 GACATCATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.61
80 31 0.36
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:42431725 original size:39 final size:40
Alignment explanation
Indices: 42431632--42431735 Score: 156
Period size: 39 Copynumber: 2.6 Consensus size: 40
42431622 AGCCCGGTTA
* * *
42431632 TAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
*
42431672 TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGAAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
*
42431711 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
42431736 ATCTTAGTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 34 0.58
40 25 0.42
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
Found at i:42438889 original size:79 final size:82
Alignment explanation
Indices: 42438778--42438962 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
42438768 GCTACTCGTT
* * *
42438778 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
42438841 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
42438858 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
42438921 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
42438938 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
42438963 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:42438962 original size:40 final size:40
Alignment explanation
Indices: 42438759--42438962 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
42438749 CGGAATTTAA
** *
42438759 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
42438799 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
42438839 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
42438878 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
42438918 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
42438958 CCGGA
1 CCGGA
42438963 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:42454463 original size:40 final size:40
Alignment explanation
Indices: 42454428--42454593 Score: 296
Period size: 40 Copynumber: 4.2 Consensus size: 40
42454418 CCCGGATGTC
42454428 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
*
42454468 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCTGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
* *
42454508 ATTCCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACG
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
*
42454548 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACC
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
42454588 ATTCCA
1 ATTCCA
42454594 CATCAAATAA
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
Found at i:42464723 original size:19 final size:20
Alignment explanation
Indices: 42464685--42464723 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
42464675 TATTTTCGCA
*
42464685 TAGCTTCCTCGAGTTCCCATG
1 TAGCTTCATCGAG-TCCCATG
42464706 TAGCTTCATCGA-TCCCAT
1 TAGCTTCATCGAGTCCCAT
42464724 TTTTTATGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.33, G:0.15, T:0.33
Consensus pattern (20 bp):
TAGCTTCATCGAGTCCCATG
Found at i:42469067 original size:42 final size:42
Alignment explanation
Indices: 42469020--42469146 Score: 150
Period size: 43 Copynumber: 3.0 Consensus size: 42
42469010 AGTACCATAC
* * **
42469020 CAATGCCATATCCCAGAAATGGTCTTACATGGGATCTCAAAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAAT
* *
42469062 CAATGCCAATAGCCCA-ACTATGGTCTTACACGAAATCTCATAT
1 CAATGCC-ATATCCCAGA-TATGGTCTTACACGAAATCTCAAAT
*
42469105 CGATGCCATATCCCAGATATGGTCTTACACGTAAA-CTCAAAT
1 CAATGCCATATCCCAGATATGGTCTTACACG-AAATCTCAAAT
42469147 AACCCTAATG
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
42 35 0.49
43 37 0.51
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAAT
Found at i:42470561 original size:19 final size:19
Alignment explanation
Indices: 42470537--42470574 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
42470527 GAAATGAATA
*
42470537 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
42470556 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
42470575 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:42472128 original size:44 final size:44
Alignment explanation
Indices: 42472070--42476169 Score: 5666
Period size: 44 Copynumber: 94.4 Consensus size: 44
42472060 CCCCGTCTAA
42472070 TACAGAGACGCCAAAT-TCGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCT-GTTATCTTCGATCTGCTCTCCGCCGC
* *
42472114 TACAGAGACGCCAAATCTGTTATCTTTGATCTCCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42472158 TATAGAGACACCAAATCTGTTATCTTCGATATACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42472202 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42472246 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42472290 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42472334 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * *
42472378 TATAGATACGCCAAATCTGCTATCTCCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42472422 TACAGAGATGCCAAATC----ATCTACGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42472462 TATAGAGATGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42472506 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42472550 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42472594 TACGGAGAGGCCAAATTTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42472638 TACGGAGACGCCAAATC----ATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42472678 TACAGAGACGCCAAATCTGTTTTCTTCGATCTACTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42472722 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42472762 TACAGAGACGCCAAATCTATTATCTTTGATCTACTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42472806 TACGGAGACGCAAAATCTG--ATCTTCGATCTACTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
** *
42472848 TATGGAGACGCCAAATCTATTATCTTCGATCTGCTC-CCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42472891 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
42472935 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42472979 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
42473023 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42473067 TACAGAGACGCCAAATCTGTTATATTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42473111 TACAGATACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42473155 TACAGAGATGCCAAATC----ATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42473195 TACAGATATGCCAAATCTGTTATCTTCGATCTGCTCTCCACTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42473239 TACGGAGACGCCAAATTTGTTATCTTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
42473283 TA-AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42473326 TACAGAGAGGCCAAATCTGTTATCTTCGATCTGCTCTCTGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42473370 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCACCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42473414 TACAGGGACGCTAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42473458 TATAGATACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42473502 TATAGGGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42473546 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42473590 TACAGATACGCCAAATCTCTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42473634 TATAGAGATGCCAAATC----ATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42473674 TACAGATATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42473718 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
42473762 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42473806 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42473850 TACAGATACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42473894 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42473934 TACAGATATGCCAAATTTGTTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42473978 TACCA-AGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCAC
1 TA-CAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42474022 TACGGAGACGCCAAATCTGATATCTTCGATCTACTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42474066 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42474110 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42474154 TACGGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474198 TACGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42474242 TACAGATACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42474286 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474326 TACAGATATGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474370 TACAGAGACGCTAAATTTGTTATCTTCGATCTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42474414 TA-AGAGACGTCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474457 TACGGAGAGGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * ***
42474501 TACGGAGACGCCAAATCTGGTATCTTCTATCTGCTCTCCGCTAT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474545 TATAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474589 TACAAAGATGCCAAATC----ATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* ** * *
42474629 TATAGAGACGCCAAATCTAATATCTTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474673 TAC-GAAGACGCCAAATCTGATATCTTCGATCTACTCTCCACCGC
1 TACAG-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42474717 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474761 TACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTGCCGA
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42474805 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* **
42474849 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474893 TACAGAGATGCGAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42474937 TATAGGGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42474981 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42475025 TACAGATACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42475069 TACAGAGATGCCAAATC----ATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42475109 TACAGATATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42475153 TATAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42475197 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42475241 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42475285 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42475329 TACAGAGACCCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42475373 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42475417 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42475461 TACAGGGACGCTAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42475505 TATAGATACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * **
42475549 TACAAAGATGCCAAATC----ATCTACGATCTGCTCTCTACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42475589 TATAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42475633 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
** * *
42475677 TATGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42475721 TACGGAGACGCCAAATCTGTTATCTTCTATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42475765 TACAGAGACGCCAAATTTGTTATCTTCGATCTACTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * **
42475809 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCACTAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42475849 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * **
42475893 TACGGAGACGCCAAATTTGTTATCTTCGATCTGCTCTCTACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
42475937 TACGGAGACGCCAAATCTGTTATCTTCGATTTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42475981 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* ***
42476025 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCATTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
42476065 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42476109 TACAGAAACGCCAAATCTATTATCTTCGATCTACTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
42476153 TACAGAGATGCTAAATC
1 TACAGAGACGCCAAATC
42476170 ATCTTGGATT
Statistics
Matches: 3607, Mismatches: 391, Indels: 116
0.88 0.10 0.03
Matches are distributed among these distances:
40 435 0.12
42 36 0.01
43 120 0.03
44 3012 0.84
45 4 0.00
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.30
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:42476262 original size:216 final size:212
Alignment explanation
Indices: 42472070--42476174 Score: 4462
Period size: 216 Copynumber: 18.9 Consensus size: 212
42472060 CCCCGTCTAA
* *
42472070 TACAGAGACGCCAAAT-TCGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGT
1 TACA-AGACGCCAAATCT-GTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---
* * * * * *
42472134 TATCTTTGATCTCCTCTCCGCCGCTATAGAGACACCAAATCTGTTATCTTCGATATACTCTCCGC
61 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
* *
42472199 CGCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
126 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC-
*
42472264 GTTATCTTCGATCTGCTCTCTGTCGC
190 --TATCTTCGATCTGCTCTC-GCCGC
* * *
42472290 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* * * * * * *
42472355 ATCTTCGATCTGCTCTCTGTCGCTATAGATACGCCAAATCTGCTATCTCCGATCTGCTCTCTGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * * *
42472420 GCTACAGAGATGCCAAATC----ATCTACGATCTGCTCTCCGCCGCTATAGAGATGCCAAATCTA
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
42472481 TTATCTTCGATCTGCTCTCCGCCGC
190 -TATCTTCGATCTGCTCT-CGCCGC
* *
42472506 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC-ACTACAGAGACGCCAAATCTGT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGA-TACAGAGATGCCAAATC---
* * * * *
42472570 TATCTTTGATCTGCTCTCCGCCGCTACGGAGAGGCCAAATTTGTTATCTTCGATCTGCTCTCTGC
61 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
* *
42472635 CGCTACGGAGACGCCAAATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
126 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC-
* * *
42472696 GTTTTCTTCGATCTACTCTCCGCCAC
190 --TATCTTCGATCTGCTCT-CGCCGC
* * * *
42472722 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTATT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* * * * * * *
42472783 ATCTTTGATCTACTCTCCGCCACTACGGAGACGCAAAATCTG--ATCTTCGATCTACTCTCCACC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
** * * *
42472846 GCTATGGAGACGCCAAATCTATTATCTTCGATCTGCTC-CCGCCGCTACGGAGACGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
42472910 TTATCTTCGATCTGCTCTCTGCCGC
190 -TATCTTCGATCTGCTCTC-GCCGC
* *
42472935 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* *
42473000 ATCTTCGATCTGCTCTCTGCCGTTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * *
42473065 GCTACAGAGACGCCAAATCTGTTATATTCGATCTGCTCTCCGTCGCTACAGATACGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAA--T-
42473130 CTATCTTCGATCTGCTCTCTGCCGC
189 CTATCTTCGATCTGCTCTC-GCCGC
* * * *
42473155 TACAGAGATGCCAAATC----ATCTTTGATCTGCTCTCCGCCGCTACAGATATGCCAAATCTGTT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* * * * *
42473216 ATCTTCGATCTGCTCTCCACTGCTACGGAGACGCCAAATTTGTTATCTTCGATCTGCTCTCTGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * *
42473281 ACTA-AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGAGGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
*
42473345 TTATCTTCGATCTGCTCTCTGCTGC
190 -TATCTTCGATCTGCTCTC-GCCGC
* * * * * * *
42473370 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCACCACCGCTACAGGGACGCTAAATCTGTT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* * * * *
42473435 ATCTTCGATCTGCTCTCTGTCGCTATAGATACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
42473500 GCTATAGGGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
*
42473565 TTATCTTCGATCTGCTCTCCGTCGC
190 -TATCTTCGATCTGCTCT-CGCCGC
* * * * *
42473590 TACAGATACGCCAAATCTCTTATCTTCGATCTGCTCTCTGCCGCTATAGAGATGCCAAATC-ATC
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATCTATC
* * *
42473654 TTCGATCTACTCTCCGCCGCTACAGATATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
65 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * *
42473719 ATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGCTACAGAGACGCCAAATCTGTTA
130 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC---TA
42473784 TCTTCGATCTGCTCTCCGCCGC
192 TCTTCGATCTGCTCT-CGCCGC
* * * * *
42473806 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCGCTACAGATACGCCAAATCTGTT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* *
42473871 ATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * * *
42473932 GCTACAGATATGCCAAATTTGTTATCTTCGATCTACTCTCCGCCGCTACCA-AGACGCCAAATCT
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTA-CAGAGACGCCAAATC-
*
42473996 ATTATCTTCGATCTGCTCTCCGCCAC
190 --TATCTTCGATCTGCTCT-CGCCGC
* * * * * * *
42474022 TACGGAGACGCCAAATCTGATATCTTCGATCTACTCTCCACCGCTACGGAGACGCCAAATCTGTT
1 TAC-AAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* *
42474087 ATCTTCGATCTGCTCTCCGCTGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * * *
42474152 GCTACGGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACGGAGATGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
*
42474217 TTATCTTCGATCTGCTCTCCGTCGC
190 -TATCTTCGATCTGCTCT-CGCCGC
* * *
42474242 TACAGATACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATC-ATC
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATCTATC
* * *
42474306 TTCGATCTGCTCTCCGCCGCTACAGATATGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCT
65 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * * * *
42474371 ACAGAGACGCTAAATTTGTTATCTTCGATCTGCTCTCCGCCACTA-AGAGACGTCAAATCTGTTA
130 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC---TA
42474435 TCTTCGATCTGCTCTCCGCCGC
192 TCTTCGATCTGCTCT-CGCCGC
* * * * * *
42474457 TACGGAGAGGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACGGAGACGCCAAATCTGGT
1 TAC-AAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* *** * *
42474522 ATCTTCTATCTGCTCTCCGCTATTATAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * ** *
42474587 ACTACAAAGATGCCAAATC----ATCTTCGATCTGCTCTCCACCGCTATAGAGACGCCAAATCTA
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
*
42474648 ATATCTTCGATCTGCTCTCTGCCAC
190 -TATCTTCGATCTGCTCTC-GCCGC
* * * * * *
42474673 TACGAAGACGCCAAATCTGATATCTTCGATCTACTCTCCACCGCTACGGAGACGCCAAATCTGTT
1 TAC-AAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* * *
42474738 ATCTTCGATCTGCTCTCCGCTGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * *
42474803 GATACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
*
42474868 TTATCTTCGATCTGCTCTCTACCGC
190 -TATCTTCGATCTGCTCTC-GCCGC
* * * * * * *
42474893 TACAGAGATGCGAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTATAGGGACGCCAAATCTGTT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* *
42474958 ATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
42475023 GCTACAGATACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATC-A
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTA
*
42475087 TCTTCGATCTACTCTCCGCCGC
192 TCTTCGATCTGCTCT-CGCCGC
* * * * *
42475109 TACAGATATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTATAGAGACGCCAAATCTATT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* *
42475174 ATCTTCGATCTGCTCTCCGCTGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * *
42475239 GCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
42475304 TTATCTTCGATCTGCTCTCTGCCGC
190 -TATCTTCGATCTGCTCTC-GCCGC
* * *
42475329 TACAGAGACCCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
* * *
42475394 ATCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * * *
42475459 GCTACAGGGACGCTAAATCTGTTATCTTCGATCTGCTCTCTGTCGCTATAGATACGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAA--T-
42475524 CTATCTTCGATCTGCTCTCTGCCGC
189 CTATCTTCGATCTGCTCTC-GCCGC
* * ** * *
42475549 TACAAAGATGCCAAATC----ATCTACGATCTGCTCTCTACCGCTATAGAGATGCCAAATCTGTT
1 TAC-AAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATC---T
*
42475610 ATCTTCGATCTGCTCTCCGCCGCTATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
62 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* ** * *
42475675 ACTATGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCGCTACGGAGACGCCAAATCTG
127 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC--
* *
42475740 TTATCTTCTATCTGCTCTCCGCTGC
190 -TATCTTCGATCTGCTCT-CGCCGC
* * *
42475765 TACAGAGACGCCAAATTTGTTATCTTCGATCTACTCTCTGCC-ACTACAGAGATGCCAAATC-AT
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGA-TACAGAGATGCCAAATCTAT
* ** * * *
42475828 CTTCGATCTGCTCTCCACTACTACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCTGCCAC
64 CTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
42475893 TACGGAGACGCCAAATTTGTTATCTTCGATCTGCTCTCTACCGCTACGGAGACGCCAAATCTGTT
129 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATC---T
* *
42475958 ATCTTCGATTTGCTCTCCGCCAC
191 ATCTTCGATCTGCTCT-CGCCGC
* *
42475981 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC-ATC
1 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATCTATC
*** *
42476045 TTCGATCTGCTCTCCATTGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCT
65 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * * * *
42476110 ACAGAAACGCCAAATCTATTATCTTCGATCTACTCTCTGCCGCTACAGAGATGCTAAATC-ATCT
130 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATCT
42476174 T
195 T
42476175 GGATTTACTT
Statistics
Matches: 3442, Mismatches: 370, Indels: 154
0.87 0.09 0.04
Matches are distributed among these distances:
210 36 0.01
212 84 0.02
213 63 0.02
214 16 0.00
215 207 0.06
216 1722 0.50
217 82 0.02
219 223 0.06
220 1002 0.29
221 3 0.00
222 2 0.00
223 2 0.00
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.30
Consensus pattern (212 bp):
TACAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGATACAGAGATGCCAAATCTATCT
TCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTA
CAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATCTT
CGATCTGCTCTCGCCGC
Found at i:42476494 original size:61 final size:64
Alignment explanation
Indices: 42476376--42476498 Score: 166
Period size: 61 Copynumber: 2.0 Consensus size: 64
42476366 TCATGCATCC
*
42476376 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATAAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGAATGCTATGATTGAAATAAATCAAATGCTCCTAACTAAATGTG
* *
42476440 ATGCTTTATGTCAAATAATTAGAATG-T-T-A-TGAAATGAAA-CAAATGTTCCTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGAATGCTATGATTGAAAT-AAATCAAATGCTCCTAACTAAATG
42476499 AATGGTTATG
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
61 25 0.46
62 4 0.07
63 1 0.02
64 5 0.09
65 19 0.35
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGAATGCTATGATTGAAATAAATCAAATGCTCCTAACTAAATGTG
Done.