Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 127 of 343
Found at i:42480892 original size:79 final size:80
Alignment explanation
Indices: 42480761--42480908 Score: 228
Period size: 79 Copynumber: 1.9 Consensus size: 80
42480751 TATTCGGATG
* *
42480761 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
42480825 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
42480840 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTAAGTGCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
42480904 ATTTG
65 ATTTG
42480909 AGCAAGTAGC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.03
79 47 0.76
80 13 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:42480922 original size:40 final size:40
Alignment explanation
Indices: 42480761--42480908 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
42480751 TATTCGGATG
* *
42480761 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
42480801 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
42480840 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
42480880 ATAACTGGGCTAAGTGCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
42480909 AGCAAGTAGC
Statistics
Matches: 99, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
39 35 0.35
40 64 0.65
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:42480930 original size:79 final size:79
Alignment explanation
Indices: 42480761--42480931 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 79
42480751 TATTCGGATG
* *
42480761 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
42480826 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
* * *
42480840 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTAAGTGCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
42480904 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
*
42480920 ATATCC-GGCTAA
1 ATAACCGGGCTAA
42480932 ATTCTGAAGG
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 55 0.68
80 24 0.30
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:42484731 original size:93 final size:93
Alignment explanation
Indices: 42484619--42484790 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
42484609 TGCCCATAAG
* * *
42484619 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
42484684 ATGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
42484712 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
42484777 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
42484791 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:42484787 original size:46 final size:46
Alignment explanation
Indices: 42484620--42484787 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
42484610 GCCCATAAGC
* * *
42484620 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
* * * ** *
42484666 GAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCCA-TAAAT
*
42484713 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
*
42484759 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
42484788 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 61 0.61
47 30 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
Found at i:42491229 original size:27 final size:27
Alignment explanation
Indices: 42491198--42491375 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
42491188 TAAATTGTAC
42491198 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
42491225 TGCACTAAGTGTGCGAAATGA--ATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
42491250 GATGCACTAAGTGTGCGAATTGACCATGC
1 -A-GCACTAAGTGTGCGATTTGACTATGT
*
42491279 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
42491307 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
42491334 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
42491361 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
42491376 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.03
27 99 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:42491339 original size:82 final size:81
Alignment explanation
Indices: 42491199--42491354 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
42491189 AAATTGTACA
* *
42491199 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
42491264 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
**
42491280 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCACTAAG
*
42491343 TGTGCGAGTTGA
63 TGTGCGAATTGA
42491355 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 15 0.22
82 48 0.72
83 1 0.01
84 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:42491366 original size:82 final size:81
Alignment explanation
Indices: 42491195--42491375 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
42491185 GATTAAATTG
* *
42491195 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
42491260 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * **
42491276 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCAC
* **
42491339 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
42491358 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
42491376 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 17 0.20
82 63 0.75
83 1 0.01
84 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
GTGTGCGAATTGACCA
Found at i:42499419 original size:27 final size:27
Alignment explanation
Indices: 42499388--42499565 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
42499378 TAAATTGTAC
42499388 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
42499415 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
42499441 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
42499469 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
42499497 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
42499524 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
42499551 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
42499566 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:42499502 original size:82 final size:81
Alignment explanation
Indices: 42499389--42499544 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
42499379 AAATTGTACA
* *
42499389 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
42499453 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
42499470 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
42499535 TGCGAGTTGA
65 TGCGAATTGA
42499545 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:42499556 original size:82 final size:81
Alignment explanation
Indices: 42499385--42499565 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
42499375 GATTAAATTG
* *
42499385 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
42499450 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
42499466 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
42499530 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
42499548 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
42499566 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:42503387 original size:93 final size:93
Alignment explanation
Indices: 42503275--42503446 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
42503265 CGCCCATAAG
* * *
42503275 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
42503340 ATGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
42503368 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
42503433 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
42503447 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:42503443 original size:46 final size:46
Alignment explanation
Indices: 42503276--42503443 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
42503266 GCCCATAAGC
* * *
42503276 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
* * * ** *
42503322 GAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCCA-TAAAT
*
42503369 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
*
42503415 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
42503444 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 61 0.61
47 30 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
Found at i:42512583 original size:19 final size:19
Alignment explanation
Indices: 42512559--42512596 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
42512549 GAAATGAATA
*
42512559 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
42512578 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
42512597 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:42517180 original size:18 final size:18
Alignment explanation
Indices: 42517154--42517240 Score: 111
Period size: 18 Copynumber: 4.8 Consensus size: 18
42517144 AAAAATAAAT
*
42517154 AGTGCAGTAACAGTAATT
1 AGTGCAGTAACAGTAATC
* *
42517172 GGTGTAGTAACAGTAATC
1 AGTGCAGTAACAGTAATC
42517190 AGTGCAGTAACAGTAATC
1 AGTGCAGTAACAGTAATC
* * * *
42517208 GGTGCATTAATAGTAATA
1 AGTGCAGTAACAGTAATC
42517226 AGTGCAGTAACAGTA
1 AGTGCAGTAACAGTA
42517241 TAGAAGTCCT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.26
Consensus pattern (18 bp):
AGTGCAGTAACAGTAATC
Found at i:42517194 original size:36 final size:36
Alignment explanation
Indices: 42517154--42517240 Score: 129
Period size: 36 Copynumber: 2.4 Consensus size: 36
42517144 AAAAATAAAT
* * *
42517154 AGTGCAGTAACAGTAATTGGTGTAGTAACAGTAATC
1 AGTGCAGTAACAGTAATCGGTGCAGTAACAGTAATA
* *
42517190 AGTGCAGTAACAGTAATCGGTGCATTAATAGTAATA
1 AGTGCAGTAACAGTAATCGGTGCAGTAACAGTAATA
42517226 AGTGCAGTAACAGTA
1 AGTGCAGTAACAGTA
42517241 TAGAAGTCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.26
Consensus pattern (36 bp):
AGTGCAGTAACAGTAATCGGTGCAGTAACAGTAATA
Found at i:42524602 original size:18 final size:18
Alignment explanation
Indices: 42524581--42524661 Score: 72
Period size: 18 Copynumber: 4.5 Consensus size: 18
42524571 AAACAGTTTT
**
42524581 GTAACAGTAATCGGTACA
1 GTAACAGTAATAAGTACA
* *
42524599 GTAACAATAATAAGTGCA
1 GTAACAGTAATAAGTACA
* *
42524617 GTAACAGTAATTAGTATA
1 GTAACAGTAATAAGTACA
* * *
42524635 GTAAGAGTAATTAGTGCA
1 GTAACAGTAATAAGTACA
*
42524653 GTAATAGTA
1 GTAACAGTA
42524662 TAGAAGTCAT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.27
Consensus pattern (18 bp):
GTAACAGTAATAAGTACA
Found at i:42524621 original size:36 final size:36
Alignment explanation
Indices: 42524559--42524661 Score: 100
Period size: 36 Copynumber: 2.9 Consensus size: 36
42524549 CTTGGCCCAT
*** *
42524559 TACAGTAACAATAA-ACAGTTTTGTAACAGTAATCGG
1 TACAGTAACAATAATA-AGTGCAGTAACAGTAATCAG
*
42524595 TACAGTAACAATAATAAGTGCAGTAACAGTAATTAG
1 TACAGTAACAATAATAAGTGCAGTAACAGTAATCAG
* * * * *
42524631 TATAGTAAGAGTAATTAGTGCAGTAATAGTA
1 TACAGTAACAATAATAAGTGCAGTAACAGTA
42524662 TAGAAGTCAT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
36 55 0.98
37 1 0.02
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (36 bp):
TACAGTAACAATAATAAGTGCAGTAACAGTAATCAG
Found at i:42527498 original size:23 final size:23
Alignment explanation
Indices: 42527472--42527549 Score: 104
Period size: 23 Copynumber: 3.3 Consensus size: 23
42527462 AGCTAAAACG
42527472 GTAAGCT-CTGACGAGCTGAATTA
1 GTAAGCTCCT-ACGAGCTGAATTA
*
42527495 GTAAGCTCCTACGAGCTGAATCA
1 GTAAGCTCCTACGAGCTGAATTA
* *
42527518 GTAAGCTCCTATGAGCTGAGAATA
1 GTAAGCTCCTACGAGCTGA-ATTA
42527542 GTAAGCTC
1 GTAAGCTC
42527550 TTATGAGTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 37 0.76
24 12 0.24
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (23 bp):
GTAAGCTCCTACGAGCTGAATTA
Found at i:42527501 original size:46 final size:46
Alignment explanation
Indices: 42527448--42527550 Score: 111
Period size: 46 Copynumber: 2.2 Consensus size: 46
42527438 CCCGACGGAC
* * *
42527448 AGTAAGCTCTATTGAGCTAAAACGGTAAGCT-CTGACGAGCTGA-ATT
1 AGTAAGCTCTA-CGAGCTAAAACAGTAAGCTCCT-ACGAGCTGAGAAT
* * *
42527494 AGTAAGCTCCTACGAGCTGAATCAGTAAGCTCCTATGAGCTGAGAAT
1 AGTAAGCT-CTACGAGCTAAAACAGTAAGCTCCTACGAGCTGAGAAT
42527541 AGTAAGCTCT
1 AGTAAGCTCT
42527551 TATGAGTTGA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
46 33 0.69
47 15 0.31
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (46 bp):
AGTAAGCTCTACGAGCTAAAACAGTAAGCTCCTACGAGCTGAGAAT
Found at i:42533477 original size:17 final size:18
Alignment explanation
Indices: 42533443--42533500 Score: 73
Period size: 17 Copynumber: 3.2 Consensus size: 18
42533433 CACTGTTTAT
42533443 TGCACTGTTTACTATTAC
1 TGCACTGTTTACTATTAC
*
42533461 TGCACTG-TTACTGTTAC
1 TGCACTGTTTACTATTAC
* *
42533478 TACACTGGTTTACTATTAT
1 TGCACT-GTTTACTATTAC
42533497 TGCA
1 TGCA
42533501 ATGGGCCAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
17 14 0.42
18 8 0.24
19 11 0.33
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (18 bp):
TGCACTGTTTACTATTAC
Found at i:42538008 original size:47 final size:47
Alignment explanation
Indices: 42537945--42538385 Score: 702
Period size: 47 Copynumber: 9.4 Consensus size: 47
42537935 CCCTTCGGGA
* * * *
42537945 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
42537992 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42538039 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
42538086 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42538133 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42538180 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42538227 CTTATCACATATATACACTTTAACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42538274 CATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42538321 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42538368 CTTATCACATATACACAC
1 CTTATCACATATATACAC
42538386 CTTGTACACC
Statistics
Matches: 373, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 373 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:42538142 original size:22 final size:22
Alignment explanation
Indices: 42538114--42538236 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
42538104 TTTCACATTC
42538114 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
42538136 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
42538160 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * * *
42538183 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
42538207 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
42538230 ATCACAT
1 ATCACAT
42538237 ATATACACTT
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 29 0.41
23 10 0.14
24 10 0.14
25 22 0.31
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:42538330 original size:22 final size:22
Alignment explanation
Indices: 42538302--42538377 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
42538292 TTTCACATTC
42538302 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
42538324 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
42538348 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
42538371 ATCACAT
1 ATCACAT
42538378 ATACACACCT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:42542174 original size:40 final size:40
Alignment explanation
Indices: 42542142--42542413 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
42542132 CCAGCATGAT
* * * * * *
42542142 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
42542182 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
42542222 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
42542262 TGCTCTTCTAGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
42542302 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
42542342 TGCTCTTCGGGACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
42542382 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
42542414 CTCAATTCTC
Statistics
Matches: 211, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:42542325 original size:23 final size:23
Alignment explanation
Indices: 42542299--42542361 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 23
42542289 TCACTAGCAT
42542299 GAATGCTCTTCGGGACTTAGCCC
1 GAATGCTCTTCGGGACTTAGCCC
* * *
42542322 GAAT-AT-ATC---AC-TAGCAC
1 GAATGCTCTTCGGGACTTAGCCC
42542339 GAATGCTCTTCGGGACTTAGCCC
1 GAATGCTCTTCGGGACTTAGCCC
42542362 AGATACATCA
Statistics
Matches: 28, Mismatches: 6, Indels: 12
0.61 0.13 0.26
Matches are distributed among these distances:
17 9 0.32
18 3 0.11
19 2 0.07
21 2 0.07
22 3 0.11
23 9 0.32
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (23 bp):
GAATGCTCTTCGGGACTTAGCCC
Found at i:42544149 original size:47 final size:47
Alignment explanation
Indices: 42544079--42544472 Score: 572
Period size: 47 Copynumber: 8.4 Consensus size: 47
42544069 CCCTTTGGGA
* * * *
42544079 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
42544126 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
42544173 CTTAACTCATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
42544220 CTTATCACATATACACACATTCACATTCATCACATTGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42544267 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42544314 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42544361 CTTATCACATATTTACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42544408 CATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42544455 CTTATCACATATACACAC
1 CTTATCACATATATACAC
42544473 CTTGTACACC
Statistics
Matches: 314, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 314 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:42544323 original size:22 final size:22
Alignment explanation
Indices: 42544295--42544370 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
42544285 TTTCACATTC
42544295 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
*** ** *
42544317 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTTGGCCTT
*
42544341 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
42544364 ATCACAT
1 ATCACAT
42544371 ATTTACACTT
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 9 0.24
25 7 0.18
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:42547763 original size:27 final size:28
Alignment explanation
Indices: 42547679--42547776 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
42547669 CATGAGATTG
* * * *
42547679 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
42547708 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
42547736 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
42547763 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
42547777 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:42547787 original size:27 final size:27
Alignment explanation
Indices: 42547707--42547789 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
42547697 TAAATTGTAC
* *
42547707 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
42547735 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
42547762 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
42547789 A
1 A
42547790 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:42547790 original size:29 final size:27
Alignment explanation
Indices: 42547679--42547790 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
42547669 CATGAGATTG
** * *
42547679 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
42547708 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
42547736 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
42547763 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
42547791 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:42555813 original size:27 final size:28
Alignment explanation
Indices: 42555729--42555826 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
42555719 CATAAGATTG
* * * * *
42555729 GCACTAAGTTTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
42555758 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
42555786 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
42555813 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
42555827 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.35
29 17 0.27
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:42555840 original size:29 final size:27
Alignment explanation
Indices: 42555757--42555840 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
42555747 TAAATTGTAC
* *
42555757 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
42555785 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
42555812 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
42555841 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:42557402 original size:24 final size:24
Alignment explanation
Indices: 42557361--42557406 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
42557351 TCCATAGCTA
42557361 CAATGACCGAAAGATCTAGACATCT
1 CAATGACCGAAAGATCTA-ACATCT
**
42557386 CAAT-ACCGAAATTTCTAACAT
1 CAATGACCGAAAGATCTAACAT
42557407 GGGTTGCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 11 0.58
25 4 0.21
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (24 bp):
CAATGACCGAAAGATCTAACATCT
Found at i:42560724 original size:22 final size:24
Alignment explanation
Indices: 42560688--42560735 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
42560678 AATTTTATGC
42560688 TAAATTGATAAAGAT-TAA-TATA
1 TAAATTGATAAAGATATAATTATA
42560710 TAAATT-ATAATAGATATAATTATA
1 TAAATTGATAA-AGATATAATTATA
42560734 TA
1 TA
42560736 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTGATAAAGATATAATTATA
Found at i:42572649 original size:65 final size:65
Alignment explanation
Indices: 42572542--42572694 Score: 162
Period size: 65 Copynumber: 2.4 Consensus size: 65
42572532 TGCAGACTGC
* * * *
42572542 CGCAACTCTTTGTGATCATCCTGTTATATGATCAATTTTGATCTCATATATATTGCAGACACAAA
1 CGCAAATCTTTGTGAGCATCCTGTTATATGATCAATTGTGATCTCACATATATTGCAGACACAAA
* * *** ** *
42572607 CGCAAATCTTTGTGAGCGTCTTGTTATATGATTGGTTGTGATCTTGCATATGTTGCAGACACAAA
1 CGCAAATCTTTGTGAGCATCCTGTTATATGATCAATTGTGATCTCACATATATTGCAGACACAAA
* * **
42572672 TGTAGCTCTTTGTGAGCATCCTG
1 CGCAAATCTTTGTGAGCATCCTG
42572695 ATATGGCTCG
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
65 70 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (65 bp):
CGCAAATCTTTGTGAGCATCCTGTTATATGATCAATTGTGATCTCACATATATTGCAGACACAAA
Found at i:42572877 original size:26 final size:26
Alignment explanation
Indices: 42572826--42572877 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
42572816 TGATAGGCTC
*
42572826 TTTGTGAGCTTCTTGATTAATGGCTT
1 TTTGTGAGCTTCTTGATTAATAGCTT
*
42572852 TTTGTGAGGTTCTTG-TTATATAGCTT
1 TTTGTGAGCTTCTTGATTA-ATAGCTT
42572878 GAGAGAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.15, C:0.10, G:0.23, T:0.52
Consensus pattern (26 bp):
TTTGTGAGCTTCTTGATTAATAGCTT
Found at i:42575720 original size:18 final size:18
Alignment explanation
Indices: 42575685--42575720 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
42575675 TTTTCGGATA
**
42575685 ATTCTAATTCTATTATTT
1 ATTCTAATTCTAAAATTT
42575703 ATTCTAATTCTAAAATTT
1 ATTCTAATTCTAAAATTT
42575721 GGTAGTGGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTCTAATTCTAAAATTT
Found at i:42577739 original size:46 final size:45
Alignment explanation
Indices: 42577609--42577823 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 45
42577599 TATCTGTGCT
* * *
42577609 GATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA-G-CT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTCGTCTCG-AGGACC
* ** *
42577655 GATGCATGCCCCAGACATGTCTTACACCAACTTACGTCTCGAGGA-A
1 GATGCATGTCCCAGACATGTCTTACACTGAC-T-CGTCTCGAGGACC
** *
42577701 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTC-AATATC
1 GATGCATGTCCCAGACATGTCTTACACT-G-ACTCGTCTCGAGGACC
* * * *
42577747 GATGCGATGTCCCAGACATGGTCTTACGCTGGCTC-TCACAATGTGACC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGACTCGTCTCGA-G-GACC
42577795 GATGCATGTCCCAGACATGTCTTACACTG
1 GATGCATGTCCCAGACATGTCTTACACTG
42577824 GCTTACAATA
Statistics
Matches: 138, Mismatches: 19, Indels: 24
0.76 0.10 0.13
Matches are distributed among these distances:
44 11 0.08
45 19 0.14
46 62 0.45
47 28 0.20
48 18 0.13
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTCGTCTCGAGGACC
Found at i:42580114 original size:40 final size:40
Alignment explanation
Indices: 42580059--42580280 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
42580049 TATTCGAATG
*
42580059 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
42580099 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* **
42580139 ATATCCAGGCTAAGTCATGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
42580179 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
42580219 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
42580259 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
42580281 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.09
40 148 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:42582830 original size:16 final size:15
Alignment explanation
Indices: 42582806--42582835 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
42582796 AACTGTTTTA
42582806 TTACAAATTTCACTC
1 TTACAAATTTCACTC
42582821 TTACATAATTTCACT
1 TTACA-AATTTCACT
42582836 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:42583154 original size:50 final size:50
Alignment explanation
Indices: 42583047--42583475 Score: 267
Period size: 50 Copynumber: 8.5 Consensus size: 50
42583037 CTGGTACGCA
* * * * * *
42583047 TAGTAGCCTGCACTTAGTACGACACATGTG-ACCAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGATACACG
* *
42583096 TAGTAGCCTGTACTTAGTACTATACACGTGAACTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGATACACG
* * * *** * * * *
42583146 TAGTAGCCTGTACTTAGTACTACAAACGTG-ATTGAAGTTGTCGGGTACCCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACT-AA-CCATCTGATACACG
** * * * * *
42583197 TAGTATTCTACACTTAGTACTGCACAAGTGACCTAACTATCT-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGA-TACACG
* * * *
42583247 TAGTACCCTACACTTAGTACTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGATACACG
* * *** * * ** *
42583297 TAATAGCCTGCACTTAGTACTACACACGTG-ATTGAAGTTGTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACT-AA-CCATCTGATACACG
* * * **
42583348 TAGTAGCCTCCACTTAGTACTACACA--TGCAACTTAACTATCTGGTACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG-AAC-TAACCATCTGATACACG
* * * * * *
42583398 TAGTAGCCTGCACTTAGTACTACACACATGACCTAAAAGCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACT--AACCATCTGATACACG
* *
42583450 TAGTAGCCTGCACATAGGACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
42583476 TGTGTTCTCA
Statistics
Matches: 291, Mismatches: 74, Indels: 27
0.74 0.19 0.07
Matches are distributed among these distances:
49 31 0.11
50 157 0.54
51 67 0.23
52 36 0.12
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGATACACG
Found at i:42583312 original size:151 final size:151
Alignment explanation
Indices: 42583039--42583433 Score: 542
Period size: 151 Copynumber: 2.6 Consensus size: 151
42583029 GAAGCTATCT
* *
42583039 GGTACGCATAGTAGCCTGCACTTAGTAC-GACACATGTGACC-AACAATCTGGTACATGTAGTAG
1 GGTACGCATAGTAGCCTACACTTAGTACTG-CACATGTGACCTAACTATCTGGTACATGTAGTAG
* * * * *
42583102 CCTGTACTTAGTACTATACACGTGAACTAACCATCTGATACACGTAGTAGCCTGTACTTAGTACT
65 CCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAATAGCCTGCACTTAGTACT
42583167 ACAAACGTGATTGAAGTTGTCG
130 ACAAACGTGATTGAAGTTGTCG
* ** * * * *
42583189 GGTACCCATAGTATTCTACACTTAGTACTGCACAAGTGACCTAACTATCTAGTACACGTAGTACC
1 GGTACGCATAGTAGCCTACACTTAGTACTGCACATGTGACCTAACTATCTGGTACATGTAGTAGC
* *
42583254 CTACACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAATAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAATAGCCTGCACTTAGTACTA
*
42583319 CACACGTGATTGAAGTTGTCG
131 CAAACGTGATTGAAGTTGTCG
* * * ** * *
42583340 GGTATGCATAGTAGCCTCCACTTAGTACTACACATGCAACTTAACTATCTGGTACGTGTAGTAGC
1 GGTACGCATAGTAGCCTACACTTAGTACTGCACATGTGACCTAACTATCTGGTACATGTAGTAGC
*
42583405 CTGCACTTAGTACTACACACATGACCTAA
66 CTGCACTTAGTACTACACACGTGACCTAA
42583434 AAGCATCTTA
Statistics
Matches: 210, Mismatches: 33, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
150 34 0.16
151 176 0.84
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTACACTTAGTACTGCACATGTGACCTAACTATCTGGTACATGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAATAGCCTGCACTTAGTACTA
CAAACGTGATTGAAGTTGTCG
Found at i:42604251 original size:16 final size:16
Alignment explanation
Indices: 42604232--42604262 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
42604222 CTTCTTCACT
42604232 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
42604248 TACTTACTTACTTAA
1 TACTCACTTACTTAA
42604263 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:42604268 original size:20 final size:20
Alignment explanation
Indices: 42604229--42604268 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
42604219 AAACTTCTTC
* *
42604229 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
42604249 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
42604269 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:42604583 original size:53 final size:53
Alignment explanation
Indices: 42604462--42604698 Score: 234
Period size: 55 Copynumber: 4.5 Consensus size: 53
42604452 ACCTTGCCAT
* * * * *
42604462 TGCCATGACTTGTCATGGTCTTACGTGGTA--TT--CTTTTGAAACTTACCAT
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAACTTACCAA
* *
42604511 TGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAAACTTACCAA
* * * * *
42604564 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-GAAACTTACCAA
* * *
42604619 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATGAAA-CTTACCAA
*
42604673 TTGCCATGCCTTGGCATGGTCTTACA
1 -TGCCATGCCTTGACATGGTCTTACA
42604699 CGGAATCCTT
Statistics
Matches: 155, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
49 27 0.17
52 4 0.03
53 46 0.30
54 13 0.08
55 63 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAACTTACCAA
Found at i:42604645 original size:108 final size:110
Alignment explanation
Indices: 42604501--42604698 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
42604491 ATTCTTTTGA
* *
42604501 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
42604564 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
* ** *
42604609 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
42604674 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
42604699 CGGAATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
Found at i:42611409 original size:20 final size:20
Alignment explanation
Indices: 42611384--42611423 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
42611374 AAACTTCTTC
*
42611384 ACTTACTCACTTAATTAAAT
1 ACTTACTCACTTAATCAAAT
*
42611404 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
42611424 TTATTAATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:42611863 original size:55 final size:55
Alignment explanation
Indices: 42611654--42611863 Score: 189
Period size: 55 Copynumber: 3.9 Consensus size: 55
42611644 GGATCCTTTT
* * * * *
42611654 GAAACTTACCATTGCCATGTCTTGACACGGTCTTACATGGT-TGCCTTGCCTAAT-
1 GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTAT-CCTTGCCTTATA
* * *
42611708 G-AGCTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTATA
* * * * * * *
42611762 GTAACTTATCAATGACATGTCTTGACATGGTCTTACATGATTTCCTTGCC-T-TA
1 GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATA
**
42611815 GAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACCCGGTATCCTT
1 GAAA-CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
42611864 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
52 2 0.02
53 45 0.37
54 10 0.08
55 64 0.52
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (55 bp):
GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:42632623 original size:57 final size:56
Alignment explanation
Indices: 42632556--42632719 Score: 206
Period size: 58 Copynumber: 2.9 Consensus size: 56
42632546 GTGAGCATGG
* * *
42632556 ATATAATGTGATTTGGGCCGGATGGGCCATATAAATGAGATTTGGCCTAACGGGCC
1 ATATAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCTAACGGGCC
*
42632612 ATATAAATGTGAATTGGGCCTA-ATGGGCCATATGAATATGA-ATTGGGCCTAATGGGCC
1 ATAT-AATGTGAATTGGGCC-AGATGGGCCATAT-AA-ATGAGATTGGGCCTAACGGGCC
** *
42632670 ATATGAACATGAATTGGGCCAGATGGGCCATATAAATGAGGTTGGGCCTA
1 ATAT-AATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCTA
42632720 GTGAGCCATA
Statistics
Matches: 94, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
56 8 0.09
57 37 0.39
58 45 0.48
59 4 0.04
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (56 bp):
ATATAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCTAACGGGCC
Found at i:42632727 original size:28 final size:28
Alignment explanation
Indices: 42632568--42632730 Score: 179
Period size: 29 Copynumber: 5.7 Consensus size: 28
42632558 ATAATGTGAT
**
42632568 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCTAATGGGCCATATAAATGAGA
* * *
42632596 TTTGGCCTAACGGGCCATATAAATGTGAA
1 TTGGGCCTAATGGGCCATATAAATGAG-A
42632625 TTGGGCCTAATGGGCCATATGAATATGA-A
1 TTGGGCCTAATGGGCCATAT-AA-ATGAGA
42632654 TTGGGCCTAATGGGCCATATGAACATGA-A
1 TTGGGCCTAATGGGCCATAT-AA-ATGAGA
*
42632683 TTGGGCC-AGATGGGCCATATAAATGAGG
1 TTGGGCCTA-ATGGGCCATATAAATGAGA
* *
42632711 TTGGGCCTAGTGAGCCATAT
1 TTGGGCCTAATGGGCCATAT
42632731 GTATGTATGT
Statistics
Matches: 117, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
27 4 0.03
28 41 0.35
29 67 0.57
30 2 0.02
31 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAATGAGA
Found at i:42634505 original size:29 final size:29
Alignment explanation
Indices: 42634462--42634562 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 29
42634452 TGAATGTGAC
42634462 TGGGCCTAATAGGCCATATAAATGTAATT
1 TGGGCCTAATAGGCCATATAAATGTAATT
* * * * *
42634491 TGTGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATAGGCCATATAAATGTAATT
* * *
42634520 TGGGCCTAACAGGCCA-ATGAATATAA-T
1 TGGGCCTAATAGGCCATATAAATGTAATT
* *
42634547 TGGGCTTAATGGGCCA
1 TGGGCCTAATAGGCCA
42634563 GATACAAGTA
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
27 14 0.25
28 5 0.09
29 37 0.66
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATAGGCCATATAAATGTAATT
Found at i:42648409 original size:47 final size:47
Alignment explanation
Indices: 42648338--42648786 Score: 765
Period size: 47 Copynumber: 9.6 Consensus size: 47
42648328 CCCTTCGGGA
* * * * * *
42648338 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42648385 CCTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42648431 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42648478 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42648525 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
42648572 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42648619 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42648666 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42648713 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42648760 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
42648787 TATTCAAATA
Statistics
Matches: 384, Mismatches: 17, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
46 44 0.11
47 340 0.89
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:42653228 original size:223 final size:223
Alignment explanation
Indices: 42652575--42653239 Score: 1230
Period size: 223 Copynumber: 3.0 Consensus size: 223
42652565 TGTTGTTAGC
42652575 CAAAATTGAG-ATTTGGTGAGAGTTTTAATAGCCAGTTGAGTATAATAAGGTGGAGAGATTTTAG
1 CAAAATTGAGAATTTGGTGAGAGTTTTAATAGCCAGTTGAGTATAATAAGGTGGAGAGATTTTAG
42652639 GAGAGGGATAAGGGAAGGAAAAAGGGGAGTTTGAGGTTTAGTGGAGTTGTGCCGAATTTGGGGAG
66 GAGAGGGATAAGGGAAGGAAAAAGGGGAGTTTGAGGTTTAGTGGAGTTGTGCCGAATTTGGGGAG
* *
42652704 TTGTGGATAGGGACTTTCGGCTGAATGACTTTTCCCTAAGACTTTCAG-TTTGGCTACTCTTTTG
131 TTGTGGATAGGGACTTTCGGCTGAGTGACTTTTCCCTAAGACTTTCGGTTTTGGCTACTCTTTTG
*
42652768 GGGTTCTTTTCTCTATATTTTCTCTCAG
196 GGGTTCTTTTCTCTATATTTTCTCTCGG
42652796 CAAAATTGAGAATTTGGTGAGAGTTTTAATAGCCAGTTGAGTATAATAAGGTGGAGAGATTTTAG
1 CAAAATTGAGAATTTGGTGAGAGTTTTAATAGCCAGTTGAGTATAATAAGGTGGAGAGATTTTAG
42652861 GAGAGGGATAAGGGAA--AAAAAGGGGAGTTTGAGGTTTAGTGGAGTTGTGCCGAATTTGGGGAG
66 GAGAGGGATAAGGGAAGGAAAAAGGGGAGTTTGAGGTTTAGTGGAGTTGTGCCGAATTTGGGGAG
* *
42652924 TTATGGATAGGGACTTTCGGCTCAGTGACTTTTCCCTAAGACTTTCGGTTTTGGCTACTCTTTTG
131 TTGTGGATAGGGACTTTCGGCTGAGTGACTTTTCCCTAAGACTTTCGGTTTTGGCTACTCTTTTG
42652989 GGGTTCTTTTCTCTATATTTTCTCTCGG
196 GGGTTCTTTTCTCTATATTTTCTCTCGG
*
42653017 CAAAATTGAGAATTTAGTGAGAGTTTTAATAGCCAGTTGAGTATAATAAGGTGGAGAGATTTTAG
1 CAAAATTGAGAATTTGGTGAGAGTTTTAATAGCCAGTTGAGTATAATAAGGTGGAGAGATTTTAG
* *
42653082 GAGAGGGATAAGGGAAGGAAAAAGGGGAGTTTGAGGTTTAATGAAGTTGTGCCGAATTTGGGGAG
66 GAGAGGGATAAGGGAAGGAAAAAGGGGAGTTTGAGGTTTAGTGGAGTTGTGCCGAATTTGGGGAG
42653147 TTGTGGATAGGGACTTTCGGCTGAGTGACTTTTCCCTAAGACTTTCGGTTTTGGCTACTCTTTTG
131 TTGTGGATAGGGACTTTCGGCTGAGTGACTTTTCCCTAAGACTTTCGGTTTTGGCTACTCTTTTG
42653212 GGGTTCTTTTCTCTATATTTTCTCTCGG
196 GGGTTCTTTTCTCTATATTTTCTCTCGG
42653240 GTTTGTACAA
Statistics
Matches: 430, Mismatches: 10, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
220 91 0.21
221 133 0.31
222 70 0.16
223 136 0.32
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.35
Consensus pattern (223 bp):
CAAAATTGAGAATTTGGTGAGAGTTTTAATAGCCAGTTGAGTATAATAAGGTGGAGAGATTTTAG
GAGAGGGATAAGGGAAGGAAAAAGGGGAGTTTGAGGTTTAGTGGAGTTGTGCCGAATTTGGGGAG
TTGTGGATAGGGACTTTCGGCTGAGTGACTTTTCCCTAAGACTTTCGGTTTTGGCTACTCTTTTG
GGGTTCTTTTCTCTATATTTTCTCTCGG
Found at i:42655739 original size:28 final size:26
Alignment explanation
Indices: 42655672--42655765 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 26
42655662 ATTTGATACT
** *
42655672 GAGCACTAAGTGTGCACGTTGGTTTT
1 GAGCACTAAGTGTGCAAATTGGTTTC
* *
42655698 AAGTACTAAGTGTGCAAATTGGATTTCC
1 GAGCACTAAGTGTGCAAATTGG-TTT-C
* *
42655726 GAGCACTAAGTGTGCGAAATCGGTTATA
1 GAGCACTAAGTGTGC-AAATTGGTT-TC
42655754 GAGCACTAAGTG
1 GAGCACTAAGTG
42655766 CGCGAGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
26 18 0.33
27 3 0.05
28 27 0.49
29 7 0.13
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (26 bp):
GAGCACTAAGTGTGCAAATTGGTTTC
Found at i:42663061 original size:26 final size:28
Alignment explanation
Indices: 42663026--42663090 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 28
42663016 TCGGTCATTG
**
42663026 AGCACTAAGTGTGCACGTTGG-TTT-TA
1 AGCACTAAGTGTGCAAATTGGATTTCTA
* *
42663052 AGCACTAAGTCTGCAAATTGGATTTCTG
1 AGCACTAAGTGTGCAAATTGGATTTCTA
42663080 AGCACTAAGTG
1 AGCACTAAGTG
42663091 CTCGAGAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 18 0.56
27 3 0.09
28 11 0.34
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCAAATTGGATTTCTA
Found at i:42663087 original size:28 final size:26
Alignment explanation
Indices: 42662996--42663089 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 26
42662986 AATTTGATAC
* * * *
42662996 TGAGCACTAACTGTGCGAAATCGGTCAT
1 TGAGCACTAAGTCTGC-AAATTGGT-TT
* **
42663024 TGAGCACTAAGTGTGCACGTTGGTTT
1 TGAGCACTAAGTCTGCAAATTGGTTT
*
42663050 TAAGCACTAAGTCTGCAAATTGGATTT
1 TGAGCACTAAGTCTGCAAATTGG-TTT
42663077 CTGAGCACTAAGT
1 -TGAGCACTAAGT
42663090 GCTCGAGAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 20 0.37
27 8 0.15
28 26 0.48
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
TGAGCACTAAGTCTGCAAATTGGTTT
Found at i:42666110 original size:42 final size:43
Alignment explanation
Indices: 42666029--42666122 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
42666019 TCTAGACGTA
* *
42666029 GTCTTACATGTAATCAAATATAGATGCCACTATCCCAGACAAG
1 GTCTTACACGAAATCAAATATAGATGCCACTATCCCAGACAAG
* **
42666072 GTCTTACACGAAATCAAATAT-GATGCCAAC-GTCCCAGACGTG
1 GTCTTACACGAAATCAAATATAGATGCC-ACTATCCCAGACAAG
42666114 GTCTTACAC
1 GTCTTACAC
42666123 ATAAATCATA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 24 0.53
43 21 0.47
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATAGATGCCACTATCCCAGACAAG
Found at i:42666129 original size:43 final size:43
Alignment explanation
Indices: 42666011--42666167 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
42666001 CTCGTACAAA
* * **
42666011 GCCAACGTTCTAGACGTAGTCTTACATGT-AATCAAATATAGAT
1 GCCAACGTCCCAGACGTAGTCTTACACATAAATCAAATAT-GAT
* * *
42666054 GCC-ACTATCCCAGAC-AAGGTCTTACAC-GAAATCAAATATGAT
1 GCCAAC-GTCCCAGACGTA-GTCTTACACATAAATCAAATATGAT
* *
42666096 GCCAACGTCCCAGACGTGGTCTTACACATAAATCATAAGT-CGAT
1 GCCAACGTCCCAGACGTAGTCTTACACATAAATCA-AA-TATGAT
* *
42666140 ACCAGCGTCCCAGACGTAGTCTTACACA
1 GCCAACGTCCCAGACGTAGTCTTACACA
42666168 ATAACACATA
Statistics
Matches: 92, Mismatches: 14, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
42 26 0.28
43 35 0.38
44 30 0.33
45 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTAGTCTTACACATAAATCAAATATGAT
Found at i:42668191 original size:43 final size:44
Alignment explanation
Indices: 42668135--42668223 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
42668125 ACATAGGACT
* * *
42668135 TCGATATGTGATTT-TGTGTTAGACCATGTCTGGGAAATTGGCA
1 TCGATATGAGATTTATGTGTAAGACCATGTCTGGGAAAGTGGCA
* * * *
42668178 TCGATTTGAGATTTATGTGTAAGACCTTGTTTGGGACAGTGGCA
1 TCGATATGAGATTTATGTGTAAGACCATGTCTGGGAAAGTGGCA
42668222 TC
1 TC
42668224 AATAGTTGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 12 0.32
44 26 0.68
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.37
Consensus pattern (44 bp):
TCGATATGAGATTTATGTGTAAGACCATGTCTGGGAAAGTGGCA
Found at i:42675048 original size:26 final size:26
Alignment explanation
Indices: 42675018--42675094 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
42675008 GCCAACACAC
42675018 CAATATCGCAGCAAAGCTGCCAGTAA
1 CAATATCGCAGCAAAGCTGCCAGTAA
* * *
42675044 TAATATCACAGCAGAGCTGCCAGTAA
1 CAATATCGCAGCAAAGCTGCCAGTAA
* *
42675070 CAGTAACGCAGCAAAGCTGCCAGTA
1 CAATATCGCAGCAAAGCTGCCAGTA
42675095 TTTGTATATG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (26 bp):
CAATATCGCAGCAAAGCTGCCAGTAA
Found at i:42690314 original size:50 final size:50
Alignment explanation
Indices: 42690257--42690625 Score: 272
Period size: 50 Copynumber: 7.7 Consensus size: 50
42690247 TATGTGTGCC
*
42690257 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGATCT
* * ** * *
42690307 AGTGTAAGACCATGTCTGGGGCATGGCATCAGC-TTGATATAT--G-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGATCT
* * * * *
42690352 AGTGTAAGATCATGTTTGGGACATGGCATCGACATCGACAAATGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGATCT
* * * *
42690402 AGTGTAAGACCATGTCTGGGATATGGCATC-G-ACTTG--ATATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGACAGATGAGATCT
* * * *
42690447 AGTGTAAGACCATGCCTGGGACATGGCATTGGCACCAACAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGATCT
* * * ** *
42690497 AGTGTAAGGCCATGTCTAGGACATGGCATCAGC-TTG---GTATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAG-ATGAGATCT
* *
42690542 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATATATGAGAGTC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGACAGATGAGA-TCT
* * * * *
42690592 AATATAAAACCATATCTGGGATATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
42690626 TCGATATGTG
Statistics
Matches: 246, Mismatches: 53, Indels: 39
0.73 0.16 0.12
Matches are distributed among these distances:
45 85 0.35
46 13 0.05
47 12 0.05
48 11 0.04
49 9 0.04
50 116 0.47
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGATCT
Found at i:42690419 original size:95 final size:95
Alignment explanation
Indices: 42690251--42690636 Score: 490
Period size: 95 Copynumber: 4.1 Consensus size: 95
42690241 TACTGTTATG
*
42690251 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGA
1 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGA
*
42690316 CCATGTCTGGGGCATGGCATCAGCTTGATA
66 CCATGTCTGGGACATGGCATCAGCTTGATA
* * * * * * *
42690346 TATGTCAGTGTAAGATCATGTTTGGGACATGGCATCGACATCGACAAATGAGATCTAGTGTAAGA
1 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGA
*
42690411 CCATGTCTGGGATATGGCATC-GACTTGATA
66 CCATGTCTGGGACATGGCATCAG-CTTGATA
* * * *
42690441 TGTGTCAGTGTAAGACCATGCCTGGGACATGGCATTGGCACCAACAGATGAGAGCTAGTGTAAGG
1 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGA
* *
42690506 CCATGTCTAGGACATGGCATCAGCTTGGTA
66 CCATGTCTGGGACATGGCATCAGCTTGATA
* * * *
42690536 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATATATGAGAG-TCAATATAA
1 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGACAGATGAGAGCT-AGTGTAA
* * * * *
42690599 AACCATATCTGGGATATGGCATCGGCATCGATA
64 GACCATGTCTGGGACATGGCATCAGC-TTGATA
42690632 TGTGT
1 TGTGT
42690637 AAGATTTCTC
Statistics
Matches: 247, Mismatches: 39, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
94 3 0.01
95 234 0.95
96 10 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (95 bp):
TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGA
CCATGTCTGGGACATGGCATCAGCTTGATA
Found at i:42690612 original size:190 final size:191
Alignment explanation
Indices: 42690251--42690636 Score: 560
Period size: 190 Copynumber: 2.0 Consensus size: 191
42690241 TACTGTTATG
* * *
42690251 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGA
1 TGTGTCAGTGTAAGACCATGCCTGGGACATGGCATCGGCACCAACAGATGAGAGCTAGTGTAAGA
* * * *
42690316 CCATGTCTGGGGCATGGCATCAGCTTGATATATGTCAGTGTAAGATCATGTTTGGGACATGGCAT
66 CCATGTCTAGGACATGGCATCAGCTTGATATATGTCAGTGTAAGACCATGTCTGGGACATGGCAT
* * * * *
42690381 CGACATCGACAAATGAGATCTAGTGTAAGACCATGTCTGGGATATGGCATCGAC-TTGATA
131 CGACATCGACAAATGAGATCTAATATAAAACCATATCTGGGATATGGCATCGACATCGATA
* *
42690441 TGTGTCAGTGTAAGACCATGCCTGGGACATGGCATTGGCACCAACAGATGAGAGCTAGTGTAAGG
1 TGTGTCAGTGTAAGACCATGCCTGGGACATGGCATCGGCACCAACAGATGAGAGCTAGTGTAAGA
* *
42690506 CCATGTCTAGGACATGGCATCAGCTTGGTATGTGTCAGTGTAAGACCATGTCTGGGACATGGCAT
66 CCATGTCTAGGACATGGCATCAGCTTGATATATGTCAGTGTAAGACCATGTCTGGGACATGGCAT
* * * * *
42690571 CGGCCTCGATATATGAGAGTC-AATATAAAACCATATCTGGGATATGGCATCGGCATCGATA
131 CGACATCGACAAATGAGA-TCTAATATAAAACCATATCTGGGATATGGCATCGACATCGATA
42690632 TGTGT
1 TGTGT
42690637 AAGATTTCTC
Statistics
Matches: 173, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
190 161 0.93
191 12 0.07
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (191 bp):
TGTGTCAGTGTAAGACCATGCCTGGGACATGGCATCGGCACCAACAGATGAGAGCTAGTGTAAGA
CCATGTCTAGGACATGGCATCAGCTTGATATATGTCAGTGTAAGACCATGTCTGGGACATGGCAT
CGACATCGACAAATGAGATCTAATATAAAACCATATCTGGGATATGGCATCGACATCGATA
Found at i:42696136 original size:69 final size:69
Alignment explanation
Indices: 42696025--42696164 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
42696015 TTATTTGCAT
42696025 GAAAAATGAAGTTAAAAAAATGACCCATGCTAGATAATTATGCATTTTGATGTTTAATGGTAGAA
1 GAAAAATGAAGTTAAAAAAATGACCCATGCTAGATAATTATGCATTTTGATGTTTAATGGTAGAA
42696090 TAAG
66 TAAG
42696094 GAAAAATGAAGTTAAAAAAATGACCCATGCTAGATAATTATGCATTTTGATGTTTAATGGTAGAA
1 GAAAAATGAAGTTAAAAAAATGACCCATGCTAGATAATTATGCATTTTGATGTTTAATGGTAGAA
42696159 TAAG
66 TAAG
42696163 GA
1 GA
42696165 TGTTTGAGGT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (69 bp):
GAAAAATGAAGTTAAAAAAATGACCCATGCTAGATAATTATGCATTTTGATGTTTAATGGTAGAA
TAAG
Found at i:42696996 original size:45 final size:45
Alignment explanation
Indices: 42696946--42697118 Score: 184
Period size: 45 Copynumber: 3.7 Consensus size: 45
42696936 TATGTGAGCC
* * *
42696946 AGTGTAATACCATGTTTGGGACATGGCATCGGCTTGATATCTATT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATATT
* ** * * *
42696991 AGTGTAAGACCATGTCTGGGACATGGCCTCGGCACCGACAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTG--ATAT-ATA-TT
* * * *
42697041 AGTGTAAGACCATATTTGGGACATGGCATCGGCTTGATATGTATC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATATT
42697086 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
42697119 ACCGACAGAT
Statistics
Matches: 102, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
45 61 0.60
46 2 0.02
47 3 0.03
48 3 0.03
49 2 0.02
50 31 0.30
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATATT
Found at i:42697061 original size:50 final size:50
Alignment explanation
Indices: 42696990--42697143 Score: 192
Period size: 50 Copynumber: 3.2 Consensus size: 50
42696980 TGATATCTAT
*
42696990 TAGTGTAAGACCATGTCTGGGACATGGCCTCGGCACCGACAGATGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGC
* * ** * * *
42697040 TAGTGTAAGACCATATTTGGGACATGGCATCGGC-TTG--ATATG-TATC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGC
42697086 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGC
*
42697135 CAGTGTAAG
1 TAGTGTAAG
42697144 TTATGCCTAT
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
45 31 0.37
46 3 0.04
47 4 0.05
48 4 0.05
49 3 0.04
50 39 0.46
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (50 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGC
Found at i:42697109 original size:95 final size:95
Alignment explanation
Indices: 42696941--42697143 Score: 352
Period size: 95 Copynumber: 2.1 Consensus size: 95
42696931 GCTGTTATGT
* * *
42696941 GAGCCAGTGTAATACCATGTTTGGGACATGGCATCGGCTTGATATCTATTAGTGTAAGACCATGT
1 GAGCCAGTGTAAGACCATATTTGGGACATGGCATCGGCTTGATATCTATCAGTGTAAGACCATGT
*
42697006 CTGGGACATGGCCTCGGCACCGACAGATGA
66 CTGGGACATGGCATCGGCACCGACAGATGA
* *
42697036 GAGCTAGTGTAAGACCATATTTGGGACATGGCATCGGCTTGATATGTATCAGTGTAAGACCATGT
1 GAGCCAGTGTAAGACCATATTTGGGACATGGCATCGGCTTGATATCTATCAGTGTAAGACCATGT
42697101 CTGGGACATGGCATCGGCACCGACAGATGA
66 CTGGGACATGGCATCGGCACCGACAGATGA
42697131 GAGCCAGTGTAAG
1 GAGCCAGTGTAAG
42697144 TTATGCCTAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 101 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (95 bp):
GAGCCAGTGTAAGACCATATTTGGGACATGGCATCGGCTTGATATCTATCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCACCGACAGATGA
Found at i:42699785 original size:10 final size:11
Alignment explanation
Indices: 42699766--42699798 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
42699756 TTGATATGTT
42699766 AATGAAGAGAA
1 AATGAAGAGAA
42699777 AAT-AAGAGAA
1 AATGAAGAGAA
*
42699787 AGTGAAGAGAA
1 AATGAAGAGAA
42699798 A
1 A
42699799 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:42702637 original size:16 final size:16
Alignment explanation
Indices: 42702612--42702650 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
42702602 GTAGATCAAC
* *
42702612 AAAAGCCGAAATGCCG
1 AAAAGTCGAAATGCCA
42702628 AAAAGTCGAAATGCCA
1 AAAAGTCGAAATGCCA
42702644 AAAAGTC
1 AAAAGTC
42702651 AAAGGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.10
Consensus pattern (16 bp):
AAAAGTCGAAATGCCA
Found at i:42702905 original size:29 final size:29
Alignment explanation
Indices: 42702865--42702977 Score: 122
Period size: 29 Copynumber: 3.9 Consensus size: 29
42702855 AAAGCTTGTA
42702865 TATGAATGTGATTTGGGCCTAATGGGCTG
1 TATGAATGTGATTTGGGCCTAATGGGCTG
*
42702894 TATGAATGTGATTTGGGTCTAATGGG-TG
1 TATGAATGTGATTTGGGCCTAATGGGCTG
* * * **
42702922 ATATGAATATGATTTGGGCTTAATAGGCCA
1 -TATGAATGTGATTTGGGCCTAATGGGCTG
* * *
42702952 TATGAATGAGA-TTGGGCTTAGTGGGC
1 TATGAATGTGATTTGGGCCTAATGGGC
42702978 CATATGCATG
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
28 15 0.21
29 56 0.79
ACGTcount: A:0.25, C:0.08, G:0.33, T:0.35
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCTG
Found at i:42703275 original size:99 final size:99
Alignment explanation
Indices: 42703104--42703304 Score: 384
Period size: 99 Copynumber: 2.0 Consensus size: 99
42703094 AGGCTAAGGT
42703104 GTGGTGATAGGTATATGCATGTCTAGGATTGGATGTAGGGAGAGCTTGGTACTTAAGCGGTCTTA
1 GTGGTGATAGGTATATGCATGTCTAGGATTGGATGTAGGGAGAGCTTGGTACTTAAGCGGTCTTA
*
42703169 ATGACTCACCTCCTCTTCTCTAGAATCCTATCTG
66 ATGACTCACCTCCTCTTCTCTAGAATCCTACCTG
*
42703203 GTGGTGATAGGTATATGCATGTCTAGGATTGTATGTAGGGAGAGCTTGGTACTTAAGCGGTCTTA
1 GTGGTGATAGGTATATGCATGTCTAGGATTGGATGTAGGGAGAGCTTGGTACTTAAGCGGTCTTA
42703268 ATGACTCACCTCCTCTTCTCTAGAATCCTACCTG
66 ATGACTCACCTCCTCTTCTCTAGAATCCTACCTG
42703302 GTG
1 GTG
42703305 CATAGTATCT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 100 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.33
Consensus pattern (99 bp):
GTGGTGATAGGTATATGCATGTCTAGGATTGGATGTAGGGAGAGCTTGGTACTTAAGCGGTCTTA
ATGACTCACCTCCTCTTCTCTAGAATCCTACCTG
Found at i:42724558 original size:12 final size:13
Alignment explanation
Indices: 42724543--42724572 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
42724533 TATAGCATAT
42724543 TATTT-CATTTAC
1 TATTTCCATTTAC
42724555 TATTTCCATTTAC
1 TATTTCCATTTAC
42724568 TATTT
1 TATTT
42724573 TAACCTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTTCCATTTAC
Found at i:42726585 original size:28 final size:28
Alignment explanation
Indices: 42726519--42726646 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
42726509 CATGAGATTG
* * **
42726519 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
42726548 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
42726576 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
42726605 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
42726633 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
42726647 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:42726608 original size:57 final size:57
Alignment explanation
Indices: 42726519--42726646 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
42726509 CATGAGATTG
*
42726519 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
42726576 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
42726633 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
42726647 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:42735811 original size:27 final size:27
Alignment explanation
Indices: 42735779--42735861 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
42735769 CAATATCTTT
42735779 GATTTGTAAAATTATCGAAATACCCTC
1 GATTTGTAAAATTATCGAAATACCCTC
*
42735806 -AGTTTGTAAAATT-GCTGAAATACCCTC
1 GA-TTTGTAAAATTATC-GAAATACCCTC
**
42735833 GACATGTAAAATTATC-AAAGTACCCTC
1 GATTTGTAAAATTATCGAAA-TACCCTC
42735860 GA
1 GA
42735862 ATTACAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
26 5 0.11
27 40 0.85
28 2 0.04
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.30
Consensus pattern (27 bp):
GATTTGTAAAATTATCGAAATACCCTC
Found at i:42735883 original size:27 final size:27
Alignment explanation
Indices: 42735853--42736047 Score: 264
Period size: 27 Copynumber: 7.2 Consensus size: 27
42735843 ATTATCAAAG
* *
42735853 TACCCTCGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
42735880 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
42735907 TACCATTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
42735934 TACCCTCGATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
42735961 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
42735988 TACCTTCGATTTAGAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
42736015 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
42736042 TACCCT
1 TACCCT
42736048 TAGGGTGTTA
Statistics
Matches: 146, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:42743445 original size:46 final size:47
Alignment explanation
Indices: 42743395--42743570 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 47
42743385 TGGTTGAGCA
* *
42743395 TCCGACCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
42743441 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAC-TAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--CGAACGC
*
42743486 ATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
42743534 GCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
42743571 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 3 0.03
46 54 0.51
47 36 0.34
48 3 0.03
49 4 0.04
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:43022289 original size:38 final size:38
Alignment explanation
Indices: 43022246--43022321 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
43022236 TTCATCCTTT
43022246 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
43022284 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
43022322 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:43023605 original size:40 final size:40
Alignment explanation
Indices: 43023504--43023648 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
43023494 TACTCGAATG
*
43023504 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
43023545 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
43023585 ATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
43023625 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
43023649 CTTCTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:43028068 original size:30 final size:30
Alignment explanation
Indices: 43028034--43028094 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
43028024 TCCTTAACTC
43028034 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
43028064 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
43028094 A
1 A
43028095 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:43033831 original size:39 final size:39
Alignment explanation
Indices: 43033777--43033869 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 39
43033767 TGCATGGTAT
* * *
43033777 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
1 TGGAAAAATATCCGGACTTAAAGTCAGCAGGC-TAAGTGC
*
43033816 TGGAAATATATCCGGACTTAAAGTCAGCAGGCTAAGTGC
1 TGGAAAAATATCCGGACTTAAAGTCAGCAGGCTAAGTGC
43033855 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
43033870 GCTAAGTCCC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.04
39 46 0.96
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTAAAGTCAGCAGGCTAAGTGC
Found at i:43033894 original size:39 final size:39
Alignment explanation
Indices: 43033862--43033989 Score: 220
Period size: 39 Copynumber: 3.3 Consensus size: 39
43033852 TGCTGGAAAA
43033862 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * *
43033901 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCGGGTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
43033940 ATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
43033979 ATATCCGGGCT
1 ATATCCGGGCT
43033990 TAAAGTCCTG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:43033906 original size:78 final size:79
Alignment explanation
Indices: 43033777--43033996 Score: 234
Period size: 78 Copynumber: 2.8 Consensus size: 79
43033767 TGCATGGTAT
* * ** * * *
43033777 TGGAAAAATATCCGGACTTGAAGT-CCGCAGGC-TTTATGCTGGAAATATATCCGGACTTAAAGT
1 TGGAAAAATATCCGGGC-T-AAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTTAAAGT
*
43033840 CAGCAGGC-TAAGTGC
64 CAGAAGGCATAAGTGC
43033855 TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGC-T-AAGTCC
1 TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTTAAAGT-C
* **
43033918 TGAAGGCATTCGTGC
65 AGAAGGCATAAGTGC
* * ** *
43033933 GGGTACTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTATTATATCCGGGCTTAAAGTC
1 TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTTAAAGTC
43033997 CTGCATGCTT
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
76 8 0.07
77 15 0.12
78 91 0.76
79 2 0.02
80 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTTAAAGTCA
GAAGGCATAAGTGC
Found at i:43038728 original size:39 final size:39
Alignment explanation
Indices: 43038674--43038766 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 39
43038664 TGCATGGTAT
* *
43038674 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGC-TAAGTGC
* *
43038713 TGGAAATATATCCGGACTTAAAGTTCGCAGGCTAAGTGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTAAGTGC
43038752 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
43038767 GCTAAGTCCC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.04
39 46 0.96
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTAAGTGC
Found at i:43038791 original size:39 final size:39
Alignment explanation
Indices: 43038759--43038925 Score: 262
Period size: 39 Copynumber: 4.3 Consensus size: 39
43038749 TGCTGGAAAA
43038759 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * **
43038798 ATATCCGGGTTAAGTCCTGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
43038837 ATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
43038876 ATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
43038915 ATATCCGGGCT
1 ATATCCGGGCT
43038926 TAAAGTCCTG
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:43038803 original size:78 final size:78
Alignment explanation
Indices: 43038674--43038925 Score: 208
Period size: 78 Copynumber: 3.2 Consensus size: 78
43038664 TGCATGGTAT
* * ** *
43038674 TGGAAAAATATCCGGACTTGAAGT-CCGCAGGC-TTTATGCTGGAAATATATCCGGACTTAAAGT
1 TGGAAAAATATCCGGGC-T-AAGTCCCGAAGGCATTCGTGCTGGAATTATATCCGG-CTT-AAGT
* *
43038737 TC-GCAGGC-TAAGTGC
62 CCTGAAGGCATAAGTGC
* *
43038752 TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGTTAAGTCCTG
1 TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGAATTATATCCGGCTTAAGTCCTG
**
43038817 AAGGCATTCGTGC
66 AAGGCATAAGTGC
**** * ** *
43038830 TGGTGCTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGCGTTATATCCGAGC-TAAGTCCC
1 TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGAATTATATCCG-GCTTAAGTCCT
**
43038894 GAAGGCATTCGTGC
65 GAAGGCATAAGTGC
* **
43038908 TGGTATTATATCCGGGCT
1 TGGAAAAATATCCGGGCT
43038926 TAAAGTCCTG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
76 9 0.06
77 15 0.10
78 121 0.83
79 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
TGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGAATTATATCCGGCTTAAGTCCTG
AAGGCATAAGTGC
Found at i:43041451 original size:85 final size:85
Alignment explanation
Indices: 43041300--43041455 Score: 197
Period size: 85 Copynumber: 1.8 Consensus size: 85
43041290 AACAAGTACA
* * * ** *
43041300 ATGTCGACGTCCCAGACCTAGTCTTACATGTAATCTAATATCAATGCCTTTGTCCTTGACAGGGT
1 ATGTCGACGTCCCAGACATAGTCTTACATGTAATCTAATATCAAGGCCTGTGTCCCAGACACGGT
43041365 CTTACACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * ** *
43041385 ATGTCGATGTCCCAGACATGGTCTTATTTGTAAATCTCA-ATCAAGGCCTGTGTCCCAGACACGG
1 ATGTCGACGTCCCAGACATAGTCTTACATGT-AATCTAATATCAAGGCCTGTGTCCCAGACACGG
43041449 TCTTACA
65 TCTTACA
43041456 TGATGTCTCA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
85 53 0.90
86 6 0.10
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (85 bp):
ATGTCGACGTCCCAGACATAGTCTTACATGTAATCTAATATCAAGGCCTGTGTCCCAGACACGGT
CTTACACGAAATCAGATACG
Found at i:43046480 original size:180 final size:182
Alignment explanation
Indices: 43046176--43046532 Score: 538
Period size: 180 Copynumber: 2.0 Consensus size: 182
43046166 TTAAGGGTCT
** * *
43046176 TGAGAAGTGTGAGAAGTCCTGAGATCAAACCTGGGCTTTGGCAATTTTTTTTGGTTTTTATTAAA
1 TGAGAAGTGTGAGAAGTCCTGAGATCAAACCTGGGCTTTGGCAATAATTTTTGATTTTTACTAAA
* *
43046241 CAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAATTAAGTCATGAAGGGTT
66 CAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAAGTAAGTCATGAAGGGTC
* * *
43046306 TGTCGGTTCAAGGGATTGTGGCGTGTTACTAATGGTAAGGTACTTGGCAACC
131 TGTAGGTTCAAGGGATTGTGGCATGTTACTAATGGTAAGGGACTTGGCAACC
* * *
43046358 TGAGAAGTGTGAGAAGTCCTGGGTTCAAACTTGGGCTTTGGCAA-AATTTTT-ATTTTTACTAAA
1 TGAGAAGTGTGAGAAGTCCTGAGATCAAACCTGGGCTTTGGCAATAATTTTTGATTTTTACTAAA
* ** * *
43046421 TAAAACCTTGGCTGCTAGGCTTTGGGTTCTTAATTAATTGGAGGGAAAGTATGTCATGAAGGGTC
66 CAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAAGTAAGTCATGAAGGGTC
*
43046486 TGTAGGTTCAAGGGATTGTGGTATGTTACTAATGGTAAGGGACTTGG
131 TGTAGGTTCAAGGGATTGTGGCATGTTACTAATGGTAAGGGACTTGG
43046533 GTTCGAGTTT
Statistics
Matches: 157, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
180 111 0.71
181 5 0.03
182 41 0.26
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (182 bp):
TGAGAAGTGTGAGAAGTCCTGAGATCAAACCTGGGCTTTGGCAATAATTTTTGATTTTTACTAAA
CAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAAGTAAGTCATGAAGGGTC
TGTAGGTTCAAGGGATTGTGGCATGTTACTAATGGTAAGGGACTTGGCAACC
Found at i:43048177 original size:27 final size:27
Alignment explanation
Indices: 43048147--43048260 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
43048137 TGTAGGGTAG
* *
43048147 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTAGTTTATAA
*
43048174 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAA
*
43048201 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAA
* * *
43048228 AATTACCAAAGTA-CCCTCGATTTATAG
1 AATTACCAAAATACCCCTAG-TTTATAA
43048255 AATTAC
1 AATTAC
43048261 TATTTTACCC
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 5 0.06
27 74 0.94
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTATAA
Found at i:43048269 original size:27 final size:27
Alignment explanation
Indices: 43048239--43048513 Score: 302
Period size: 27 Copynumber: 10.2 Consensus size: 27
43048229 ATTACCAAAG
* *
43048239 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTGTTT
* *
43048266 TACCCTCGATTTACAAAATTACTGCTT
1 TACCCTCGATTTATAAAATTACTGTTT
** * *
43048293 TACCCTTAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
*
43048320 TACCCTTGATTTATAAAATTA-TCGTTT
1 TACCCTCGATTTATAAAATTACT-GTTT
* * *
43048347 TAACCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* * *
43048374 TACCTTCGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTATAAAATTACT-GTTT
* * *
43048401 TATCCTAGATTTATAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACTGTTT
43048428 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* * * *
43048455 TACCCTCTATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
**
43048482 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTGTTT
43048509 TACCC
1 TACCC
43048514 CTAGGGTGTT
Statistics
Matches: 208, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
27 207 1.00
28 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTGTTT
Found at i:43048865 original size:27 final size:26
Alignment explanation
Indices: 43048811--43048869 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
43048801 CCACATATAT
* *
43048811 ATATCTGTTCTGGTGGCCTAGTCGCA
1 ATATCTGTTCTGGTGACCTAGTCACA
* *
43048837 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGTCACA
43048864 ATATCT
1 ATATCT
43048870 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGTCACA
Found at i:43048888 original size:98 final size:98
Alignment explanation
Indices: 43048781--43048984 Score: 372
Period size: 98 Copynumber: 2.1 Consensus size: 98
43048771 CTGTTCTAGT
* * *
43048781 GCTGTAATCTGGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAGTCGCAATATCTGTA
1 GCTGCAATCTGGTGGCTTCGCCACATATATATATCTATTCTGGTGGCCTAGCCGCAATATCTGTA
43048846 TCTGGTGACTTCGTCACAATATCTAGCAGCCTC
66 TCTGGTGACTTCGTCACAATATCTAGCAGCCTC
43048879 GCTGCAATCTGGTGGCTTCGCCACATATATATATCTATTCTGGTGGCCTAGCCGCAATATCTGTA
1 GCTGCAATCTGGTGGCTTCGCCACATATATATATCTATTCTGGTGGCCTAGCCGCAATATCTGTA
*
43048944 TCTGGTGACTTCGTCACAATATCTGGCAGCCTC
66 TCTGGTGACTTCGTCACAATATCTAGCAGCCTC
43048977 GCTGCAAT
1 GCTGCAAT
43048985 TTCTGTGGTA
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 102 1.00
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (98 bp):
GCTGCAATCTGGTGGCTTCGCCACATATATATATCTATTCTGGTGGCCTAGCCGCAATATCTGTA
TCTGGTGACTTCGTCACAATATCTAGCAGCCTC
Found at i:43049126 original size:6 final size:6
Alignment explanation
Indices: 43049087--43049147 Score: 70
Period size: 6 Copynumber: 10.0 Consensus size: 6
43049077 TTGCATTCAC
* * *
43049087 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTT ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
43049136 ATTCTG ATTCTG
1 ATTCTG ATTCTG
43049148 TCACCTGATT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
5 2 0.04
6 40 0.87
7 3 0.07
8 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:43049183 original size:43 final size:43
Alignment explanation
Indices: 43049081--43049175 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
43049071 TTGGGGTTGC
* * *
43049081 ATTCACATTCTGATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGATACTGATTCTG
* *
43049124 ATTCTTATTCTGATTCTGATTCTGTCACCTGATTA-TGATTTTG
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGA-TACTGATTCTG
43049167 ATTCTCATT
1 ATTCTCATT
43049176 TTTATTCTAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 43 0.96
44 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (43 bp):
ATTCTCATTCTGATTCTGATTCTGTCACCTGATACTGATTCTG
Found at i:43051978 original size:45 final size:45
Alignment explanation
Indices: 43051914--43052075 Score: 247
Period size: 45 Copynumber: 3.6 Consensus size: 45
43051904 TATCGCACAG
*
43051914 TACTATTCGGGACTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
*
43051959 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
* * *
43052004 TACCACTT-GGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTA-TTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
*
43052049 TACTATTCGGG-CTTCGAGCCTAGTAGG
1 TACTATTCGGGCCTTTGAGCCTAGTAGG
43052076 TGAAATACCG
Statistics
Matches: 106, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
44 16 0.15
45 88 0.83
46 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
Found at i:43059803 original size:45 final size:44
Alignment explanation
Indices: 43059739--43059899 Score: 214
Period size: 45 Copynumber: 3.6 Consensus size: 44
43059729 TATCGCATAG
*
43059739 TACTATTCGGGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
43059784 TACTATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGG-CCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * * *
43059829 TACCACTCAGGCCTTTGAGCCTAGTAGGCTCTAATGCCGGTGTGA
1 TACTATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
43059874 TACTATTCGGGCTTTTAGCCTAGCAG
1 TACTATTCGGCCTTTGAGCCTAGCAG
43059900 ACGAAATGTC
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
44 17 0.17
45 82 0.81
46 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (44 bp):
TACTATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:43061722 original size:20 final size:20
Alignment explanation
Indices: 43061681--43061722 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
43061671 GGGAGTTAAT
*
43061681 TTTAATGTTTGTGAGCTAGA
1 TTTAATGTTTGTGAGCCAGA
*
43061701 TTTAATGTTTGTGAGCCCGA
1 TTTAATGTTTGTGAGCCAGA
43061721 TT
1 TT
43061723 GAAAAAAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.24, T:0.45
Consensus pattern (20 bp):
TTTAATGTTTGTGAGCCAGA
Found at i:43062852 original size:47 final size:47
Alignment explanation
Indices: 43062787--43063000 Score: 190
Period size: 47 Copynumber: 4.6 Consensus size: 47
43062777 CTTGCGTACT
43062787 AGTGTAAGACATGTCTGGGACATGCATCGACCACA-ATATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAGATATGATAGCC
* * * ** *
43062833 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGA-ATGAGCGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACAGATATGATAGCC
* * *
43062882 AGTGTACGACATGTCTGGGACATGCGTCGGCCAC-GATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAGAT-ATGATAGCC
* * * * * *
43062929 AATGTAAGACATCTTTGGGACATGCATCGGCTA-AGAGT-TG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAGA-TATGATAGCC
*
43062973 AGTGTAAGACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
43063001 AGCACACGTA
Statistics
Matches: 138, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 28 0.20
45 3 0.02
46 12 0.09
47 56 0.41
48 22 0.16
49 16 0.12
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACAGATATGATAGCC
Found at i:43062948 original size:95 final size:91
Alignment explanation
Indices: 43062785--43063000 Score: 281
Period size: 95 Copynumber: 2.3 Consensus size: 91
43062775 TACTTGCGTA
* *
43062785 CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATATGATAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATATGATAGCCAATGTAAGACCATCTCT
43062850 GGGACATGGCATCGGCGTAGAGAATGAGCG
66 GGGACAT-GCATCGGC-TA-AGAAT-AGCG
* * * * *
43062880 CTAGTGTACGACATGTCTGGGACATGCGTCGGCCACGATGATGATAGCCAATGTAAGA-CATCTT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAAT-ATGATAGCCAATGTAAGACCATCTC
* * *
43062944 TGGGACATGCATCGGCTAAGAGTTGTG
65 TGGGACATGCATCGGCTAAGAATAGCG
*
43062971 CTAGTGTAAGACATGTTTGGGACATGCATC
1 CTAGTGTAAGACATGTCTGGGACATGCATC
43063001 AGCACACGTA
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
91 29 0.27
92 4 0.04
93 2 0.02
94 8 0.07
95 47 0.44
96 17 0.16
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (91 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATATGATAGCCAATGTAAGACCATCTCT
GGGACATGCATCGGCTAAGAATAGCG
Found at i:43073789 original size:21 final size:21
Alignment explanation
Indices: 43073763--43073803 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
43073753 TGCATATTCT
43073763 AATTTCATAAACTAATTTACG
1 AATTTCATAAACTAATTTACG
43073784 AATTTCATAAACTAATTTAC
1 AATTTCATAAACTAATTTAC
43073804 TAAATCAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCATAAACTAATTTACG
Found at i:43075681 original size:15 final size:15
Alignment explanation
Indices: 43075649--43075677 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
43075639 ATTTTCTGTG
43075649 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
43075664 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
43075678 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:43080809 original size:27 final size:27
Alignment explanation
Indices: 43080034--43080830 Score: 904
Period size: 27 Copynumber: 29.5 Consensus size: 27
43080024 AAGTACTCCT
*
43080034 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
43080061 -AGTTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
* * **
43080088 AATTTACAAAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
43080115 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** * *
43080142 GATTTTTAAAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
43080169 GATGTACAGAATTACCATTTTAGCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
43080196 -AGTTTACAGAATTACCGTTTTTCCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
43080223 GATTTATAGAATTACCGTTTTACCCT-
1 GATTTACAGAATTACCGTTTTACCCTC
* *
43080249 TAGTTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
**
43080277 GATTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
43080304 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
43080331 AATTTACAGAA-TATCTATTTTACCCTC
1 GATTTACAGAATTA-CCGTTTTACCCTC
* ** *
43080358 GATTTATAGAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
*
43080385 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** * *
43080412 GATTTTTAAAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
43080439 GATTTACAGAATTACCGTTTTAGCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
43080466 -AGTTTACAGAATTACCATTTTTCCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
43080493 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
43080520 AATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
**
43080547 GATTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
43080574 GATTTACAAAATTATTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ** *
43080601 AATTTACAGAA-TATTTGTTTCACCCTC
1 GATTTACAGAATTA-CCGTTTTACCCTC
* * **
43080628 GATTTATAAAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
43080655 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ** *
43080682 GATTTATAGAATTACTATTTTACGCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
43080709 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
43080736 GATTTATAGAATTATCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
43080763 GATTTATAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
43080790 GATTTACAGAATTACTGTTTTTTCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
43080817 AATTTACAAAATTA
1 GATTTACAGAATTA
43080831 TTGAAATACC
Statistics
Matches: 663, Mismatches: 95, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.01
27 647 0.98
28 8 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:43080898 original size:27 final size:27
Alignment explanation
Indices: 43080868--43081024 Score: 194
Period size: 27 Copynumber: 5.9 Consensus size: 27
43080858 CCCTCGATCA
43080868 GTAAAATTACCAAAATACCCCT-AGTTT
1 GTAAAATTACCAAAATACCCCTGA-TTT
*
43080895 GTAAAATTACCAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCCTGATTT
* *
43080922 GTAAAATTACTAAAATACCCCTGACTT
1 GTAAAATTACCAAAATACCCCTGATTT
43080949 GTAAAATTACCAAAATACCCCTGATTT
1 GTAAAATTACCAAAATACCCCTGATTT
* * *
43080976 GTGAAATTATCAAAATA-CTCTCGATTT
1 GTAAAATTACCAAAATACCCCT-GATTT
* * *
43081003 GTATAA-TATCGAAATACCCCTG
1 GTAAAATTACCAAAATACCCCTG
43081025 TAGGGTAGAA
Statistics
Matches: 114, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.11
27 101 0.89
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTGATTT
Found at i:43081047 original size:27 final size:26
Alignment explanation
Indices: 43081012--43081209 Score: 270
Period size: 27 Copynumber: 7.3 Consensus size: 26
43081002 TGTATAATAT
43081012 CGAAATACCCCTGTAGGGTAGAATTA
1 CGAAATACCCCTGTAGGGTAGAATTA
*
43081038 TCGGAATACCCCTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
*
43081065 CTGAAATACCCCTATAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
43081092 CCGAAATACCCCTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
* *
43081119 CTGAAATACCCTTGTAGGGTAGAAATTT
1 C-GAAATACCCCTGTAGGGTAG-AATTA
*
43081147 CGAAATACCCCTGTAGGATAGAATTA
1 CGAAATACCCCTGTAGGGTAGAATTA
*
43081173 CTGAAATACCCCTATAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
*
43081200 CCGAGATACC
1 -CGAAATACC
43081210 TTGTGAGGTA
Statistics
Matches: 153, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
26 7 0.05
27 139 0.91
28 7 0.05
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (26 bp):
CGAAATACCCCTGTAGGGTAGAATTA
Found at i:43081083 original size:54 final size:54
Alignment explanation
Indices: 43081013--43081209 Score: 306
Period size: 54 Copynumber: 3.6 Consensus size: 54
43081003 GTATAATATC
* *
43081013 GAAATACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACT
*
43081067 GAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACT
* * *
43081121 GAAATACCCTTGTAGGGTAGAAATT-TCGAAATACCCCTGTAGGATAGAATTACT
1 GAAATACCCCTATAGGGTAG-AATTATCGAAATACCCCTGTAGGGTAGAATTACT
* *
43081175 GAAATACCCCTATAGGGTAGAATTACCGAGATACC
1 GAAATACCCCTATAGGGTAGAATTATCGAAATACC
43081210 TTGTGAGGTA
Statistics
Matches: 130, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
53 4 0.03
54 122 0.94
55 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (54 bp):
GAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACT
Found at i:43081674 original size:31 final size:31
Alignment explanation
Indices: 43081633--43081707 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
43081623 ATTCACATTC
* * *
43081633 TGATTTTGATTTTGTTACCTGATACTGATTA
1 TGATTTTGATTCTGTCACCTAATACTGATTA
* * *
43081664 TGATTCTGATTCTGTCACCTAATTCTGATTC
1 TGATTTTGATTCTGTCACCTAATACTGATTA
43081695 TGATTTTGATTCT
1 TGATTTTGATTCT
43081708 ACTTCTGATA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
TGATTTTGATTCTGTCACCTAATACTGATTA
Found at i:43084308 original size:40 final size:39
Alignment explanation
Indices: 43084271--43084452 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
43084261 GCTACTCGTT
*
43084271 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
43084311 CAAATTGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAA-TGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* *
43084351 CAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* * * * *
43084389 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
43084430 CAAA-G-CTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
43084453 ACATCATTCA
Statistics
Matches: 121, Mismatches: 13, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
37 2 0.02
38 23 0.19
39 38 0.31
40 41 0.34
41 17 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:43084374 original size:39 final size:39
Alignment explanation
Indices: 43084271--43084453 Score: 194
Period size: 39 Copynumber: 4.6 Consensus size: 39
43084261 GCTACTCGTT
*
43084271 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCA
* *
43084311 CAAATTGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAA-TGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
*
43084351 CAAATGCCTTCGGGCTTAGCCCGGA-TTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
43084389 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
43084430 CAAA-G-CTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
43084454 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 25 0.20
39 45 0.37
40 33 0.27
41 19 0.16
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:43084447 original size:78 final size:80
Alignment explanation
Indices: 43084271--43084453 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 80
43084261 GCTACTCGTT
* *
43084271 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATTGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATTGCCTTCGGACTTAACCCGG
* *
43084336 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
* **
43084351 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTATCTCGCACAAA-TGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATTGCCTTCGGA-CTTAACCCG
* *
43084413 GATATGGTCACTTAGCA
65 GATATAGTAAC-TAGCA
43084430 CAAA-G-CTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43084454 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
77 17 0.19
78 42 0.46
79 18 0.20
80 14 0.15
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATTGCCTTCGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:43093161 original size:79 final size:82
Alignment explanation
Indices: 43093050--43093234 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
43093040 GCTACTCGTT
* * *
43093050 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
43093113 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
43093130 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
43093193 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
43093210 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43093235 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:43093234 original size:40 final size:40
Alignment explanation
Indices: 43093031--43093234 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
43093021 CGGAATTTAA
** *
43093031 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
43093071 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
43093111 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
43093150 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
43093190 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
43093230 CCGGA
1 CCGGA
43093235 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:43104603 original size:93 final size:93
Alignment explanation
Indices: 43104444--43104614 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
43104434 GGATGGTTGA
* * * *
43104444 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCTAAACTCGTCGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTCGAGT
43104509 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
43104537 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTCGAGT
43104602 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
43104615 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTCGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:43104608 original size:46 final size:46
Alignment explanation
Indices: 43104448--43104619 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
43104438 GGTTGAGCAT
* * *
43104448 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
** * * * *
43104494 CTAAACTCGTCGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
43104539 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
43104587 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
43104620 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 25 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:43112007 original size:46 final size:46
Alignment explanation
Indices: 43111957--43112129 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
43111947 TGGTTGAGCA
43111957 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
43112003 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
43112048 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** *
43112096 -CTTGAGTTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
43112130 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 57 0.54
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:43112113 original size:93 final size:93
Alignment explanation
Indices: 43111954--43112124 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
43111944 GGATGGTTGA
*
43111954 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
43112019 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* **
43112047 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTTGAGTTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
*
43112111 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
43112125 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:43115492 original size:46 final size:46
Alignment explanation
Indices: 43115442--43115567 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
43115432 TGGTTGAGCA
43115442 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
43115488 TCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
43115534 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
43115568 GGGGCGGGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:43119664 original size:40 final size:40
Alignment explanation
Indices: 43119584--43119804 Score: 304
Period size: 40 Copynumber: 5.5 Consensus size: 40
43119574 ACCCAAGTAT
* * *
43119584 CTTCGGCATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* ** *
43119623 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAGTGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
43119663 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
43119703 CTACGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
43119743 CTTCGGGACTTAGCCCGGATATAG-CAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
43119783 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
43119805 CATCTGAATA
Statistics
Matches: 163, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
39 10 0.06
40 152 0.93
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:43125587 original size:46 final size:46
Alignment explanation
Indices: 43125537--43125707 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
43125527 GTTGAGCATT
43125537 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
43125583 CGAACTCATTGAGTTGAGTCCGAG-T---TTGTGACATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TC
*
43125630 CGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
43125675 CTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
43125708 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 12, Indels: 24
0.74 0.09 0.18
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
45 4 0.04
46 51 0.50
47 24 0.24
48 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:43125701 original size:93 final size:93
Alignment explanation
Indices: 43125532--43125701 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
43125522 GGATGGTTGA
*
43125532 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
43125597 TGAGTCCGAGTTTGTGACATGTAACTAG
66 TGAGTCCGAGTTTGTGACATGTAACTAG
* * *
43125625 GCATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCATTGAG
*
43125689 TTGAGTCTGAGTT
65 TTGAGTCCGAGTT
43125702 CACTTAGGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
TGAGTCCGAGTTTGTGACATGTAACTAG
Done.