Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 130 of 343
Found at i:43810913 original size:76 final size:76
Alignment explanation
Indices: 43810787--43810934 Score: 233
Period size: 76 Copynumber: 1.9 Consensus size: 76
43810777 GCACACGGGT
* * * *
43810787 GTGTGGCCTGGCTTTGTGGTTCAATTTATTTTGCAGGCATCATAAATAGAGAGTTACACGGCCTA
1 GTGTGGCCTGGCTGTGTGGTTCAATTTATTTTACAGACATCATAAATAGAGAGTTACACGACCTA
*
43810852 AGGACACAGGC
66 AAGACACAGGC
* *
43810863 GTGTGGCCTGGCTGTGTGGTTCAATTTATTTTACAGACGTCATTAATAGAGAGTTACACGACCTA
1 GTGTGGCCTGGCTGTGTGGTTCAATTTATTTTACAGACATCATAAATAGAGAGTTACACGACCTA
43810928 AAGACAC
66 AAGACAC
43810935 GGGCTTGTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (76 bp):
GTGTGGCCTGGCTGTGTGGTTCAATTTATTTTACAGACATCATAAATAGAGAGTTACACGACCTA
AAGACACAGGC
Found at i:43812770 original size:15 final size:15
Alignment explanation
Indices: 43812750--43812829 Score: 88
Period size: 15 Copynumber: 5.3 Consensus size: 15
43812740 ATTATGATAT
43812750 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
43812765 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
* *
43812780 TTTATCTAGGATTTC
1 TGTATCTTGGATTTC
* * *
43812795 TTTGTCTTGGACTTC
1 TGTATCTTGGATTTC
* *
43812810 TTTATCTTGGTTTTC
1 TGTATCTTGGATTTC
43812825 ATGTA
1 -TGTA
43812830 ATCTCTATTC
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
15 52 0.95
16 3 0.05
ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:43821787 original size:24 final size:24
Alignment explanation
Indices: 43821738--43821788 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
43821728 ATGAATCGAC
* * *
43821738 AAAAGCCAAAATGTCGAAATGTCG
1 AAAAACCAAAATGTCGAAAAGCCG
43821762 AAAAACCAAAATG-CTGAAAAGCCG
1 AAAAACCAAAATGTC-GAAAAGCCG
43821786 AAA
1 AAA
43821789 GTTTGGCTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.53, C:0.18, G:0.18, T:0.12
Consensus pattern (24 bp):
AAAAACCAAAATGTCGAAAAGCCG
Found at i:43822078 original size:27 final size:29
Alignment explanation
Indices: 43822011--43822110 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 29
43822001 TGAATGTGAC
* *
43822011 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
43822040 TGGGCCTAATGGGCCATATATAGGTG-TT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* * **
43822068 T-GGCCTAATGGGTCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
43822095 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
43822111 GATACGGGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
27 21 0.36
28 15 0.25
29 23 0.39
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:43829355 original size:27 final size:29
Alignment explanation
Indices: 43829325--43829385 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
43829315 GTGAGCATGA
*
43829325 ATATGAATGTGA-CT-GGCCTAACGGGCC
1 ATATAAATGTGATCTGGGCCTAACGGGCC
* *
43829352 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATCTGGGCCTAACGGGCC
43829381 ATATA
1 ATATA
43829386 CAGGTGGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 11 0.38
28 1 0.03
29 17 0.59
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATCTGGGCCTAACGGGCC
Found at i:43829379 original size:29 final size:29
Alignment explanation
Indices: 43829339--43829436 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 29
43829329 GAATGTGACT
*
43829339 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
43829368 GGCCTAATGGGCCATATACAGGTGGTTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * * *
43829397 GGCCTAGTTGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
43829425 GGCTTAATGGGC
1 GGCCTAATGGGC
43829437 TAGATACGGG
Statistics
Matches: 55, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
28 12 0.22
29 43 0.78
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.29
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:43842582 original size:29 final size:29
Alignment explanation
Indices: 43842521--43842585 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
43842511 GGAGTAGGCG
* **
43842521 CATTACTTTCAACATCAACAGCTATGGTG
1 CATTACTTTCAACATCAACAGCTATAGCC
*
43842550 CATTACTTTCCACATCAACAGCTATAGCC
1 CATTACTTTCAACATCAACAGCTATAGCC
43842579 CATTACT
1 CATTACT
43842586 CTCCCCCTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (29 bp):
CATTACTTTCAACATCAACAGCTATAGCC
Found at i:43844127 original size:28 final size:29
Alignment explanation
Indices: 43844073--43844127 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
43844063 ATTTATTTGA
*
43844073 AAATTTAACCCCTCAATTTACACTTTTCT
1 AAATTTAACCCCTCAATTGACACTTTTCT
* * *
43844102 AAATTTAA-TCCTTAATTGACATTTTT
1 AAATTTAACCCCTCAATTGACACTTTT
43844128 GTCAAAAATC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 14 0.64
29 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.45
Consensus pattern (29 bp):
AAATTTAACCCCTCAATTGACACTTTTCT
Found at i:43856672 original size:26 final size:26
Alignment explanation
Indices: 43856643--43856693 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
43856633 ATATTCAGCT
43856643 ATAACA-AATATAAATTCTAACATTTC
1 ATAACAGAATATAAATT-TAACATTTC
* *
43856669 ATAACAGCATATATATTTAACATTT
1 ATAACAGAATATAAATTTAACATTT
43856694 AACTACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (26 bp):
ATAACAGAATATAAATTTAACATTTC
Found at i:43861104 original size:11 final size:11
Alignment explanation
Indices: 43861088--43861113 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
43861078 GACTTGTGAA
43861088 TGTATAAATCG
1 TGTATAAATCG
43861099 TGTATAAATCG
1 TGTATAAATCG
43861110 TGTA
1 TGTA
43861114 CCATTGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (11 bp):
TGTATAAATCG
Found at i:43881792 original size:40 final size:40
Alignment explanation
Indices: 43881747--43881958 Score: 223
Period size: 40 Copynumber: 5.3 Consensus size: 40
43881737 TAATTATTAT
*
43881747 CTGAATGCACATACGTG-CCCTAATTTGTACTTTGGTACCC
1 CTGAATGCACATACGTGCCCCT-ATTTATACTTTGGTACCC
****
43881787 CTGAATGCACATACGTGCCCCTATTTATACTACAATACCC
1 CTGAATGCACATACGTGCCCCTATTTATACTTTGGTACCC
* * * * *
43881827 CTAAATGCACATATGTGGCCCTATTTGTACTTCGGTACCC
1 CTGAATGCACATACGTGCCCCTATTTATACTTTGGTACCC
* * *
43881867 C-GAAATGCACATACATGCCCCTGTTTTTACTTTGGTACCC
1 CTG-AATGCACATACGTGCCCCTATTTATACTTTGGTACCC
* * * * *
43881907 TTGAATACACATACATGCCCCTATTTATACTTTTGTAACC
1 CTGAATGCACATACGTGCCCCTATTTATACTTTGGTACCC
43881947 CTGAAT-CACATA
1 CTGAATGCACATA
43881959 GTATGCGAAC
Statistics
Matches: 143, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.04
40 132 0.92
41 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.32
Consensus pattern (40 bp):
CTGAATGCACATACGTGCCCCTATTTATACTTTGGTACCC
Found at i:43883488 original size:20 final size:20
Alignment explanation
Indices: 43883456--43883493 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
43883446 ACTTATTGCC
43883456 TATTTTTTATTATATATTTT
1 TATTTTTTATTATATATTTT
*
43883476 TATTATTTT-TTATTTATT
1 TATT-TTTTATTATATATT
43883494 AACCCGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (20 bp):
TATTTTTTATTATATATTTT
Found at i:43889204 original size:14 final size:14
Alignment explanation
Indices: 43889185--43889214 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
43889175 CAACTCCCAG
43889185 CTGGGGTACCCTCT
1 CTGGGGTACCCTCT
43889199 CTGGGGTACCCTCT
1 CTGGGGTACCCTCT
43889213 CT
1 CT
43889215 CACAGTGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.37, G:0.27, T:0.30
Consensus pattern (14 bp):
CTGGGGTACCCTCT
Found at i:43892299 original size:32 final size:32
Alignment explanation
Indices: 43892263--43892328 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
43892253 ATGACGATTT
43892263 GAGGCTATAACTTTGAAGTAATGTTGCTGACA
1 GAGGCTATAACTTTGAAGTAATGTTGCTGACA
43892295 GAGGCTATAACTTTGAAGTAATGTTGCTGACA
1 GAGGCTATAACTTTGAAGTAATGTTGCTGACA
43892327 GA
1 GA
43892329 TACTAAGGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (32 bp):
GAGGCTATAACTTTGAAGTAATGTTGCTGACA
Found at i:43895134 original size:78 final size:79
Alignment explanation
Indices: 43894986--43895209 Score: 253
Period size: 78 Copynumber: 2.8 Consensus size: 79
43894976 TTGAATGATG
* * * * *
43894986 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATA-CCGGGCTAAG-TCCCGAAGGCAT
43895049 TTGTGCGAGATACTAAA
63 TTGTGCGAGATACTAAA
*
43895066 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-CCGGGCTAAGTCCCGAAGGCAT
*
43895127 TTGTGCGAGTTACTAAA
63 TTGTGCGAGATACTAAA
** *
43895144 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATGACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTAT-ACCGGGCTAAGTCCCGAAGGCATTT
43895209 G
65 G
43895210 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
77 2 0.02
78 58 0.47
79 18 0.15
80 36 0.29
81 9 0.07
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:43895173 original size:40 final size:40
Alignment explanation
Indices: 43894986--43895209 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
43894976 TTGAATGATG
* * * *
43894986 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
43895026 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
43895066 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
43895105 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
43895144 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
43895185 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
43895210 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 23 0.14
39 22 0.13
40 109 0.67
41 9 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:43899987 original size:14 final size:14
Alignment explanation
Indices: 43899968--43899996 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
43899958 GAACAAGGAA
43899968 TCGGAGTTTCAAAT
1 TCGGAGTTTCAAAT
43899982 TCGGAGTTTCAAAT
1 TCGGAGTTTCAAAT
43899996 T
1 T
43899997 GATGATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (14 bp):
TCGGAGTTTCAAAT
Found at i:43903075 original size:79 final size:80
Alignment explanation
Indices: 43902915--43903139 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 80
43902905 TTGAATGATG
* * * * * *
43902915 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-ATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTACGAA-TTACTATGA-CCGGGCTAAG-TCCCGAAGGCA
43902977 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGATACTAAA
* *
43902995 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTACGA-ATTACT-ATGACCGGGCTAAGTCCCGAAGGCA
*
43903056 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
43903074 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAATTACTATGACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTACGAATTACTATGACCGGGCTAAGTCCCGAAGGCATTT
43903139 G
66 G
43903140 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 43 0.35
81 11 0.09
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTACGAATTACTATGACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:43903110 original size:40 final size:40
Alignment explanation
Indices: 43902915--43903139 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
43902905 TTGAATGATG
* * * *
43902915 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAA
*
43902955 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAAA
* *
43902995 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAAA
*
43903035 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
* * *
43903074 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAATTACTATGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AA
*
43903115 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
43903140 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 118 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:43903158 original size:119 final size:120
Alignment explanation
Indices: 43902915--43903145 Score: 267
Period size: 119 Copynumber: 1.9 Consensus size: 120
43902905 TTGAATGATG
*
43902915 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
43902980 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTACGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
* * * **
43903035 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
43903097 TTGTACGA-ATTACTATGA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG
64 TTGTACGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAG
43903146 GAGCTATATC
Statistics
Matches: 94, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
118 3 0.03
119 72 0.77
120 19 0.20
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
Found at i:43903161 original size:79 final size:79
Alignment explanation
Indices: 43902968--43903172 Score: 197
Period size: 79 Copynumber: 2.6 Consensus size: 79
43902958 GGACTAAGAT
** ** *
43902968 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTACGAGATAC
*
43903031 TAATTCCGGGCTAAGC
64 TAATACCGGGCTAAGC
** * *
43903047 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTACGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTACGAGA-TACT
*
43903111 -ATGACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* *
43903127 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
43903173 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
78 5 0.05
79 78 0.72
80 25 0.23
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTACGAGATACTA
ATACCGGGCTAAGC
Found at i:43907691 original size:14 final size:14
Alignment explanation
Indices: 43907669--43907721 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 14
43907659 ACCTCTTGTA
*
43907669 AAAAGAAAACGA-G
1 AAAAGAAAAAGATG
43907682 AAAAGAAAAAGATG
1 AAAAGAAAAAGATG
*
43907696 AAAAGCAAAAAGCTATC
1 AAAAG-AAAAAG--ATG
43907713 AAAAGAAAA
1 AAAAGAAAA
43907722 GAGAGGCAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 11 0.32
14 6 0.18
15 6 0.18
16 4 0.12
17 7 0.21
ACGTcount: A:0.70, C:0.08, G:0.17, T:0.06
Consensus pattern (14 bp):
AAAAGAAAAAGATG
Found at i:43909825 original size:66 final size:68
Alignment explanation
Indices: 43909696--43909825 Score: 176
Period size: 66 Copynumber: 1.9 Consensus size: 68
43909686 GGGATGTATC
*
43909696 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC-T-AGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
43909761 AGGACA
63 AGGACA
* *
43909767 CCATGTAGACAAGAGAGCTA-T-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACTAGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
43909826 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
69 1 0.02
71 20 0.36
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACTAGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGG
ACA
Found at i:43917086 original size:96 final size:96
Alignment explanation
Indices: 43916917--43917106 Score: 292
Period size: 96 Copynumber: 2.0 Consensus size: 96
43916907 TACTTTCTTT
*
43916917 TCTACTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACATT
1 TCTACTTAGATATTTAATTGCACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACATT
***
43916982 GTGCAAAAGGTCATAGCTCAATTATATTCTC
66 ACACAAAAGGTCATAGCTCAATTATATTCTC
* *
43917013 TCTATTTAGATATTTAATTGCACATTTGAAACCCTTATGATCTTTTGAACTACACCAATAAC-TC
1 TCTACTTAGATATTTAATTGCACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACAT-
* *
43917077 TACACAAAAGGTGATAGCTCAATTGTATTC
65 TACACAAAAGGTCATAGCTCAATTATATTC
43917107 CTCCTTTCAT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
95 1 0.01
96 84 0.99
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.36
Consensus pattern (96 bp):
TCTACTTAGATATTTAATTGCACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACATT
ACACAAAAGGTCATAGCTCAATTATATTCTC
Found at i:43917606 original size:17 final size:17
Alignment explanation
Indices: 43917567--43917600 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
43917557 ATGAGGTAAG
43917567 AATTAATCTTTTATGTC
1 AATTAATCTTTTATGTC
43917584 AATTAATCTTTTATGTC
1 AATTAATCTTTTATGTC
43917601 TTTTAAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
AATTAATCTTTTATGTC
Found at i:43919882 original size:26 final size:27
Alignment explanation
Indices: 43919833--43919896 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
43919823 ATTCACTAAA
*
43919833 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAGGTATGAAAATTACCATT
*
43919860 ATACCCCTAGGTGT-AAAATTACCATT
1 ATACCCCTAGGTATGAAAATTACCATT
*
43919886 ATACCCTTAGG
1 ATACCCCTAGG
43919897 GTTGATTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (27 bp):
ATACCCCTAGGTATGAAAATTACCATT
Found at i:43920067 original size:27 final size:26
Alignment explanation
Indices: 43920000--43920110 Score: 150
Period size: 27 Copynumber: 4.1 Consensus size: 26
43919990 GGAAAAGTTT
*
43920000 TGGTGGCTCTGCCACAAATATCTATTTC
1 TGGTGGCTCTGCCAC-AATATCT-GTTC
43920028 TGGTGGCTCTGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
* *
43920055 TGGTAGCTTTGCCACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTGT-TC
*
43920082 TGGTGACTCTGCCACAATATCTGTTC
1 TGGTGGCTCTGCCACAATATCTGTTC
43920108 TGG
1 TGG
43920111 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 14 0.18
27 39 0.51
28 23 0.30
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:43924879 original size:17 final size:18
Alignment explanation
Indices: 43924842--43924879 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
43924832 GATTGAGAGT
* *
43924842 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
43924860 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
43924877 GAA
1 GAA
43924880 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:43924892 original size:13 final size:12
Alignment explanation
Indices: 43924861--43924915 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
43924851 TGTGAAACAG
*
43924861 AAAAGAAATTGA
1 AAAAGAAGTTGA
43924873 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
43924885 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
43924897 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
43924909 AAAAGAA
1 AAAAGAA
43924916 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:43930718 original size:16 final size:18
Alignment explanation
Indices: 43930688--43930725 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
43930678 TTATGTGACA
43930688 AATATATTAAGTTATAAT
1 AATATATTAAGTTATAAT
*
43930706 AATAT-TTAA-TTATATT
1 AATATATTAAGTTATAAT
43930722 AATA
1 AATA
43930726 ATAAAACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 10 0.53
17 4 0.21
18 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
AATATATTAAGTTATAAT
Found at i:43933953 original size:63 final size:63
Alignment explanation
Indices: 43933885--43934005 Score: 154
Period size: 63 Copynumber: 1.9 Consensus size: 63
43933875 TCAAATTTAA
* ** *
43933885 AAAAAAAAGTAATTAAG-CCCTTTTTCTTTTTTCACTCAATTGTGCACTTGAACTTTCACTTCTT
1 AAAAAAAA-CAATTAAGCCCCTCCTT-TTTTTTCACTCAATTGGGCACTTGAACTTTCACTTCTT
** *
43933949 AAAAAAAACAATTAAGCCCCTCCTTTTTTTTCGTTCAATTGGGTACTTGAACTTTCA
1 AAAAAAAACAATTAAGCCCCTCCTTTTTTTTCACTCAATTGGGCACTTGAACTTTCA
43934006 AAATGTATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
63 35 0.71
64 14 0.29
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (63 bp):
AAAAAAAACAATTAAGCCCCTCCTTTTTTTTCACTCAATTGGGCACTTGAACTTTCACTTCTT
Found at i:43934162 original size:18 final size:19
Alignment explanation
Indices: 43934064--43934167 Score: 69
Period size: 19 Copynumber: 5.6 Consensus size: 19
43934054 GCTCCTACTC
43934064 TTATTAAAAA-TTAGAAAAA
1 TTATTAAAAATTTA-AAAAA
* * *
43934083 -TATTATAAATAATAATAAA
1 TTATTAAAAAT-TTAAAAAA
* *
43934102 -TAAT-AAATTTTAGAAAAA
1 TTATTAAAAATTTA-AAAAA
*
43934120 TTATT-AAATTTTAATAAAA
1 TTATTAAAAATTTAA-AAAA
43934139 TT-TTAAAAATTT-AAAAA
1 TTATTAAAAATTTAAAAAA
43934156 TTATTAAAAATT
1 TTATTAAAAATT
43934168 GGAATTTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
17 8 0.12
18 28 0.41
19 30 0.44
20 2 0.03
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TTATTAAAAATTTAAAAAA
Found at i:43934162 original size:29 final size:29
Alignment explanation
Indices: 43934102--43934167 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
43934092 TAATAATAAA
*
43934102 TAATAAATTTTAGAAAAATTATTAAATTT
1 TAATAAATTTTAGAAAAATTATAAAATTT
*
43934131 TAATAAAATTTTA-AAAATTTA-AAAATTAT
1 TAAT-AAATTTTAGAAAAATTATAAAATT-T
43934160 TAA-AAATT
1 TAATAAATT
43934168 GGAATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 5 0.15
28 5 0.15
29 15 0.45
30 8 0.24
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (29 bp):
TAATAAATTTTAGAAAAATTATAAAATTT
Found at i:43934164 original size:10 final size:10
Alignment explanation
Indices: 43934115--43934167 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
43934105 TAAATTTTAG
43934115 AAAAATTATT
1 AAAAATTATT
** *
43934125 AAATTTTAAT
1 AAAAATTATT
43934135 -AAAATT-TT
1 AAAAATTATT
43934143 AAAAA-T-TT
1 AAAAATTATT
43934151 AAAAATTATT
1 AAAAATTATT
43934161 AAAAATT
1 AAAAATT
43934168 GGAATTTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
8 9 0.26
9 9 0.26
10 16 0.47
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAAATTATT
Found at i:43934513 original size:19 final size:20
Alignment explanation
Indices: 43934491--43934540 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
43934481 TTACAATTTT
43934491 TTTATATATTTTTACC-ATG
1 TTTATATATTTTTACCAATG
* *
43934510 TTTATAT-TTTTTTCCAATT
1 TTTATATATTTTTACCAATG
43934529 TTTA-ATATTTTT
1 TTTATATATTTTT
43934541 TTAATATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 9 0.33
19 18 0.67
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTATATATTTTTACCAATG
Found at i:43944769 original size:17 final size:16
Alignment explanation
Indices: 43944731--43944768 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
43944721 TTATTTATTT
43944731 ATTTTTATTTTTGGAA
1 ATTTTTATTTTTGGAA
43944747 ATTTTTATTTTTGGAA
1 ATTTTTATTTTTGGAA
43944763 ATTTTT
1 ATTTTT
43944769 TCTTTCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.66
Consensus pattern (16 bp):
ATTTTTATTTTTGGAA
Found at i:43946530 original size:46 final size:45
Alignment explanation
Indices: 43946383--43946531 Score: 123
Period size: 46 Copynumber: 3.2 Consensus size: 45
43946373 TGTAACCCGC
*
43946383 CCAT-AAGTGAACTCGGACTCAACTCAATGAGTTCGGATGC-CTAGTTA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---A
* * *
43946430 -CATTTC-A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCAT
1 CCA--TCAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAA
43946476 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
43946520 CCATCCAAGTGA
1 CCAT-CAAGTGA
43946532 CATGTCACTT
Statistics
Matches: 82, Mismatches: 7, Indels: 27
0.71 0.06 0.23
Matches are distributed among these distances:
44 8 0.10
45 3 0.04
46 36 0.44
47 29 0.35
48 2 0.02
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
Found at i:43946972 original size:30 final size:30
Alignment explanation
Indices: 43946938--43946997 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
43946928 ATTAAATATG
43946938 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
43946968 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
43946998 GGCTTGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:43951610 original size:27 final size:27
Alignment explanation
Indices: 43951580--43951735 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
43951570 TGCTATTCAC
* *
43951580 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
43951607 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
43951634 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
43951662 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
43951689 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
43951716 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
43951736 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:43951651 original size:55 final size:55
Alignment explanation
Indices: 43951585--43951736 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
43951575 TTCACTCAAC
* *
43951585 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
43951640 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
43951694 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
43951737 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:43959667 original size:27 final size:27
Alignment explanation
Indices: 43959637--43959792 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
43959627 TGCTATTCAC
* *
43959637 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
43959664 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
43959691 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
43959719 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
43959746 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
43959773 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
43959793 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:43959708 original size:55 final size:55
Alignment explanation
Indices: 43959642--43959793 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
43959632 TTCACTCAAC
* *
43959642 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
43959697 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
43959751 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
43959794 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:43963229 original size:46 final size:49
Alignment explanation
Indices: 43963068--43963378 Score: 241
Period size: 46 Copynumber: 6.6 Consensus size: 49
43963058 GGTATAATGT
*
43963068 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAT-T-AAGT--
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCAT-CATATCAAGTGC
*
43963115 CGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCGAAATCAAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCATC-ATATCAAGTGC
* *
43963164 CGATGCCATGTCCCAGACATAGTCTTACGCT-CTCA-CATATC-AGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTACTCATCATATCAAGTGC
**
43963210 CGATGCCATGTCCCAGACATGGTCTTACACTA---A-CATATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTACTCATCATATCAAGT-GC
* * * **
43963256 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTTGAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCATCATATCAAGTGC
* * * * *
43963302 TGATG-CATGTCTCAGACAT-GTCTTACACTAGCTC-TCGTCTCAA-TAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CTCATCATATCAAGTGC
* * *
43963348 CGATGCCATGTTCTAGACATGGTCTGACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
43963379 GGCTCTCATA
Statistics
Matches: 218, Mismatches: 27, Indels: 37
0.77 0.10 0.13
Matches are distributed among these distances:
44 17 0.08
45 19 0.09
46 86 0.39
47 48 0.22
48 19 0.09
49 29 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTACTCATCATATCAAGTGC
Found at i:43963236 original size:95 final size:95
Alignment explanation
Indices: 43963068--43963285 Score: 276
Period size: 95 Copynumber: 2.3 Consensus size: 95
43963058 GGTATAATGT
*
43963068 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATTAAGTCGATGCCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATAGTCTTACACT-GCTCA-CCATTAAGTCGATGCCATGTCCCAGAC
43963133 ATGGTCTTACACTAAC-TATCGAAATCAAGGC
64 ATGGTCTTACACTAACATATCGAAATCAAGGC
* *
43963164 CGATGCCATGTCCCAGACATAGTCTTACGCT-CTCA-CATATCAGTGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATAGTCTTACACTGCTCACCAT-TAAGT--CGATGCCATGTCCCAGA
*
43963227 CATGGTCTTACACTAACATATC----TCGTA-GC
63 CATGGTCTTACACTAACATATCGAAATC-AAGGC
43963256 CGATG-CATGTCCCAGACAT-GTCTTACACTG
1 CGATGCCATGTCCCAGACATAGTCTTACACTG
43963286 GCTTACATCT
Statistics
Matches: 111, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
90 9 0.08
91 14 0.13
92 12 0.11
93 5 0.05
94 4 0.04
95 34 0.31
96 33 0.30
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATAGTCTTACACTGCTCACCATTAAGTCGATGCCATGTCCCAGACAT
GGTCTTACACTAACATATCGAAATCAAGGC
Found at i:43964102 original size:41 final size:41
Alignment explanation
Indices: 43964055--43964132 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
43964045 TCTCTATTAG
*
43964055 AAAGCTCATGTTACAAGGGGTCCAAAACTACAAAAATACAA
1 AAAGCTCATGTTACAAGGGGTCCAAAAATACAAAAATACAA
*
43964096 AAAGCTCATGTTATAAGGGGTCCAAAAATACAAAAAT
1 AAAGCTCATGTTACAAGGGGTCCAAAAATACAAAAAT
43964133 CAGCAAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.19
Consensus pattern (41 bp):
AAAGCTCATGTTACAAGGGGTCCAAAAATACAAAAATACAA
Found at i:43970556 original size:48 final size:46
Alignment explanation
Indices: 43970486--43970608 Score: 162
Period size: 48 Copynumber: 2.7 Consensus size: 46
43970476 ACATATTCTT
* * *
43970486 GCCGATGCCATGCCCCAAACATGGTCTTACAATGACACCTCTATACGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACAATGACA-C-ATAT-CGTA
*
43970535 -CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACAATGACACATATCGTA
43970580 GCCGATG-CATGTCCCAGACAT-GTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
43970609 CTGGCTTACA
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 8 0.12
45 18 0.26
46 9 0.13
47 1 0.01
48 33 0.48
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACAATGACACATATCGTA
Found at i:43970631 original size:46 final size:46
Alignment explanation
Indices: 43970390--43970748 Score: 196
Period size: 46 Copynumber: 7.6 Consensus size: 46
43970380 CCATTAAGTT
* *
43970390 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGAAATCGAGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-ATATCGAGGCC
* * ** * * **
43970439 AACGCCATACCCCATACATGGTCTTACACTAGCTCTCACATATTC-TTGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT--CATA-TCGAGGCC
* * * * *
43970489 GATGCCATGCCCCAAACATGGTCTTACAATGACACCTC-TATACGTA--CC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-TCTCATAT-CG-AGGCC
* *
43970537 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATCG-AGGCC
*
43970583 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATATCGAGGCC
* * * * * ** *
43970629 GATGCATGTCCTAAACATGTCTTACACTAGCTCTCGTCTTAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCC
* * *
43970675 GATGCCATGTACCAAACATGCTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACATG-TCTTACACTGGCTCTCAT-ATCGAGGCC
* *
43970723 GATGCATGTTCCAGATATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
43970749 ATAGCACACA
Statistics
Matches: 247, Mismatches: 46, Indels: 37
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.04
45 22 0.09
46 66 0.27
47 27 0.11
48 55 0.22
49 31 0.13
50 31 0.13
51 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCC
Found at i:43970723 original size:94 final size:92
Alignment explanation
Indices: 43970580--43970753 Score: 219
Period size: 94 Copynumber: 1.9 Consensus size: 92
43970570 ACATATCGTA
* * *
43970580 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATG-TCCTAAA
1 GCCGATGCATGTACCAAACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTTCC-AAA
*
43970644 CATGTCTTACACTAGCTCTCGTCTTAAT
65 CATGTCTTACAATAGCTCTCGTCTTAAT
*
43970672 GCCGATGCCATGTACCAAACATGCTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTTCC
1 GCCGATG-CATGTACCAAACATG-TCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTTCC
* *
43970735 AGATATGTCTTACAATAGC
62 AAACATGTCTTACAATAGC
43970754 ACACATATCA
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 45 0.64
95 5 0.07
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTACCAAACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTTCCAAAC
ATGTCTTACAATAGCTCTCGTCTTAAT
Found at i:43975232 original size:40 final size:40
Alignment explanation
Indices: 43975170--43975465 Score: 408
Period size: 40 Copynumber: 7.5 Consensus size: 40
43975160 AAACCAAGTA
* * *
43975170 CCTTCGGGATTTA-ACCGGATATAG-CTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTCGCACAAATG
*
43975209 CCTTCGGGACTTAGCCCGGATATAGT-AGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCA-CTCGCACAAATG
*
43975249 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
*
43975289 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTCACTCGCACAAATG
* *
43975329 CCTTCGGGACTTAGCCCGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
*
43975368 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTCACTCGCACAAATG
*
43975408 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTCACTCGCACAAATG
43975448 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
43975466 TTATCATCCG
Statistics
Matches: 240, Mismatches: 9, Indels: 15
0.91 0.03 0.06
Matches are distributed among these distances:
39 49 0.20
40 190 0.79
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
Found at i:43975384 original size:119 final size:120
Alignment explanation
Indices: 43975196--43975465 Score: 429
Period size: 119 Copynumber: 2.3 Consensus size: 120
43975186 GGATATAGCT
* * * *
43975196 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAGCTAGCACAAATGCCTTCGGGACTT
*
43975261 AGCCCGG-ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66 AGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
43975316 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAT-TAGTCA-CTAGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT-AGCTAGCACAAATGCCTTCGGGACT
* *
43975379 TAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
65 TAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
43975435 ACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
43975466 TTATCATCCG
Statistics
Matches: 140, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
119 105 0.75
120 35 0.25
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAGCTAGCACAAATGCCTTCGGGACTT
AGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:43983325 original size:40 final size:40
Alignment explanation
Indices: 43983263--43983516 Score: 349
Period size: 40 Copynumber: 6.4 Consensus size: 40
43983253 AAACCAAGTA
* * *
43983263 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
43983302 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
43983342 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
43983382 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
43983422 CCTTC-GGACTTAGCCCGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
43983460 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
43983500 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
43983517 CGTTATCATC
Statistics
Matches: 197, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 21 0.11
39 40 0.20
40 136 0.69
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:43983474 original size:118 final size:120
Alignment explanation
Indices: 43983289--43983516 Score: 356
Period size: 118 Copynumber: 1.9 Consensus size: 120
43983279 GGATATAGCT
* * * *
43983289 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAGCTAGCACAAATGCCTTCGGGACTT
*
43983354 AGCCCGG-ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66 AGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
43983409 ACTCGCACAAATGCCTTC-GGACTTAGCCCGAAT-TAGTCA-CTAGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT-AGCTAGCACAAATGCCTTCGGGACT
*
43983471 TAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
65 TAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
43983517 CGTTATCATC
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
118 66 0.66
119 17 0.17
120 17 0.17
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAGCTAGCACAAATGCCTTCGGGACTT
AGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:43983481 original size:78 final size:80
Alignment explanation
Indices: 43983296--43983516 Score: 349
Period size: 78 Copynumber: 2.8 Consensus size: 80
43983286 GCTACTCGCT
**
43983296 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
43983360 GATATAGTAACTCGCA
65 AATATAGTAACTAGCA
43983376 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
43983440 AT-TAGTCACTAGCA
66 ATATAGTAACTAGCA
* *
43983454 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
43983517 CGTTATCATC
Statistics
Matches: 132, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
78 59 0.45
79 25 0.19
80 46 0.35
81 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
ATATAGTAACTAGCA
Found at i:43989381 original size:50 final size:49
Alignment explanation
Indices: 43989270--43989495 Score: 247
Period size: 49 Copynumber: 4.6 Consensus size: 49
43989260 CTGGTACGCA
* * * * **
43989270 TAGTAGCCTACACTTAATACTACACATGCGACCAATTATCCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
* **
43989319 TAGTAGCCTGCACTTAGTACTACACGCGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACG
* * * * *
43989369 TAGTAGCTTGCACTTAGTACTACACACGTGATCAAAGTTATC-GCGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTG-ATACACG
* * * *
43989420 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
43989469 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
43989496 ATGGCCTCAC
Statistics
Matches: 147, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 63 0.43
50 48 0.33
51 36 0.24
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
Found at i:43993951 original size:56 final size:56
Alignment explanation
Indices: 43993865--43993981 Score: 216
Period size: 56 Copynumber: 2.1 Consensus size: 56
43993855 GCAAGGGATG
*
43993865 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
43993921 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
43993977 ATGGG
1 ATGGG
43993982 CAATAAACTA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.45, C:0.08, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:43995574 original size:47 final size:47
Alignment explanation
Indices: 43995442--43995944 Score: 708
Period size: 47 Copynumber: 10.6 Consensus size: 47
43995432 TATTTGAATA
*
43995442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43995491 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43995540 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
43995587 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
43995634 AATGTGAAAGTGTATATATATGTGGTAAGGTCAAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43995683 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43995730 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43995777 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
43995824 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
43995871 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
43995918 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
43995945 TCCCGAAGGG
Statistics
Matches: 421, Mismatches: 29, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 317 0.75
49 102 0.24
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:43995705 original size:143 final size:143
Alignment explanation
Indices: 43995442--43995944 Score: 741
Period size: 143 Copynumber: 3.5 Consensus size: 143
43995432 TATTTGAATA
*
43995442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
43995507 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCT
64 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCG
*
43995571 AATGGCCGATGTGATG
128 AATGGCCAATGTGATG
43995587 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
43995652 TATGTGGTAAGGTCAAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAAT
66 TATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAAT
43995717 GGCCAATGTGATG
131 GGCCAATGTGATG
* * *
43995730 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* * * *
43995791 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGA
64 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGA
43995856 ATGGCCAATGTGATG
129 ATGGCCAATGTGATG
* * *
43995871 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
43995935 -ATGTGATAAG
66 TATGTGATAAG
43995945 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 27, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
140 2 0.01
141 132 0.41
142 1 0.00
143 174 0.54
144 3 0.01
145 12 0.04
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:43995916 original size:22 final size:22
Alignment explanation
Indices: 43995795--43995916 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
43995785 CATGTGTATG
*
43995795 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
* *
43995817 TGTGATGAATGT-GAACAT-GCATATA
1 TGTGAT-AAGGTCG-A-ATGGC-CA-A
* *
43995842 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
* ***
43995864 TGTGATGAATGT-GAAAGTGTATATA
1 TGTGAT-AAGGTCG-AA-TGGCCA-A
43995889 TGTGATAAGGTCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
43995911 TGTGAT
1 TGTGAT
43995917 GGATGTGGAA
Statistics
Matches: 71, Mismatches: 17, Indels: 24
0.63 0.15 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 18 0.25
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGCCAA
Found at i:43998703 original size:49 final size:49
Alignment explanation
Indices: 43998647--43998877 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
43998637 CTGGTACGCA
* *
43998647 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGCACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * *
43998696 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * * *
43998746 TAGTAG-CTGCACTTAGTATTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
*
43998796 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
*
43998845 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
43998878 TCACAATAGA
Statistics
Matches: 154, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
49 98 0.64
50 35 0.23
51 21 0.14
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:43998800 original size:100 final size:98
Alignment explanation
Indices: 43998647--43998876 Score: 300
Period size: 100 Copynumber: 2.3 Consensus size: 98
43998637 CTGGTACGCA
* * * *
43998647 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGCACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGCACACATAGTAGCCTGCACTTA
* *
43998712 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* * * *
43998746 TAGTAG-CTGCACTTAGTATTACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCCGGCACACATAGTAGCCTGCACT
* ** *
43998810 TAGTACTACACATGCGACCAATTATCCGGTACACG
64 TAGTACTACACACGCGACCAACCATCCGATACACG
43998845 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
43998877 CTCACAATAG
Statistics
Matches: 113, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
98 21 0.19
99 28 0.25
100 64 0.57
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGCACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:44004901 original size:43 final size:44
Alignment explanation
Indices: 44004852--44005013 Score: 206
Period size: 43 Copynumber: 3.8 Consensus size: 44
44004842 ATGAGATCAT
*
44004852 ATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGTGATTAC
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTATATGTGATTAC
* * * *
44004895 GTGTAAGACCATGTCTGGGACAGTGGCATCGT-TATATGATTTC
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTATATGTGATTAC
* *
44004938 ATGTAAGACCATGTCTGGGACATTGGCATCG-ATATGAGATAAC
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTATATGTGATTAC
* * *
44004981 ATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTAT
44005014 GAGTTTTATG
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 8 0.08
43 94 0.92
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (44 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGTATATGTGATTAC
Found at i:44004998 original size:86 final size:85
Alignment explanation
Indices: 44004852--44005008 Score: 235
Period size: 86 Copynumber: 1.8 Consensus size: 85
44004842 ATGAGATCAT
* * * * *
44004852 ATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATGTCTGGGACA
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTATTGAGATAACATGTAAGACCATATCTGGGACA
44004917 GTGGCATCGTTATATGATTTC
66 -TGGCATCGTTATATGATTTC
*
44004938 ATGTAAGACCATGTCTGGGACATTGGCATCG-ATATGAGATAACATGTAAGACCATATCTGGGAT
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGAGATAACATGTAAGACCATATCTGGGAC
44005002 ATGGCAT
65 ATGGCAT
44005009 TGTATGAGTT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
85 8 0.12
86 56 0.88
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (85 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGTATTGAGATAACATGTAAGACCATATCTGGGACA
TGGCATCGTTATATGATTTC
Found at i:44008767 original size:184 final size:184
Alignment explanation
Indices: 44008458--44008814 Score: 696
Period size: 184 Copynumber: 1.9 Consensus size: 184
44008448 GGAGTGTCCT
44008458 CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
1 CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
44008523 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
66 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
44008588 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGTATATGTGTCGA
131 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGTATATGTGTCGA
*
44008642 CGAAGACTTTTAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
1 CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
*
44008707 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTGAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
66 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
44008772 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGT
131 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGT
44008815 GTTATACCAC
Statistics
Matches: 171, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
184 171 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.34
Consensus pattern (184 bp):
CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGTATATGTGTCGA
Found at i:44009142 original size:13 final size:13
Alignment explanation
Indices: 44009124--44009151 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
44009114 AGTATTTGTC
44009124 TTATTTTATTATT
1 TTATTTTATTATT
44009137 TTATTTTATTATT
1 TTATTTTATTATT
44009150 TT
1 TT
44009152 TTATTTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTATTTTATTATT
Found at i:44009159 original size:16 final size:16
Alignment explanation
Indices: 44009129--44009158 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
44009119 TTGTCTTATT
44009129 TTATTATTTTATTTTA
1 TTATTATTTTATTTTA
44009145 TTATT-TTTTATTTT
1 TTATTATTTTATTTT
44009159 TGGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
TTATTATTTTATTTTA
Found at i:44009236 original size:16 final size:16
Alignment explanation
Indices: 44009215--44009251 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
44009205 TATCTTTATT
44009215 TTTTTCTTTTTCTTT-C
1 TTTTTC-TTTTCTTTCC
44009231 TTTTTCTTTTCTTTCC
1 TTTTTCTTTTCTTTCC
44009247 TTTTT
1 TTTTT
44009252 GAAAACAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCTTTTCTTTCC
Found at i:44011299 original size:40 final size:40
Alignment explanation
Indices: 44011240--44011496 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
44011230 GGATTGATAA
44011240 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
44011279 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
44011319 CTGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
44011359 CCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
44011399 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
44011440 -CGGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
44011479 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
44011497 TACTTGGTTT
Statistics
Matches: 199, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
39 27 0.14
40 171 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:44018443 original size:13 final size:13
Alignment explanation
Indices: 44018425--44018450 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44018415 GGATTTTCGA
44018425 AGTTCATCTCTTT
1 AGTTCATCTCTTT
44018438 AGTTCATCTCTTT
1 AGTTCATCTCTTT
44018451 GTTTCCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (13 bp):
AGTTCATCTCTTT
Found at i:44021162 original size:34 final size:34
Alignment explanation
Indices: 44021119--44021205 Score: 102
Period size: 34 Copynumber: 2.6 Consensus size: 34
44021109 CTAATTTGAT
* *
44021119 ATGACATTCTGATCTGATATATGTTTCTGGAAAG
1 ATGACATTCTGATATGATAAATGTTTCTGGAAAG
* * * * *
44021153 ATGACATTCTAATTTGATAAATGTTTTTGGTAAT
1 ATGACATTCTGATATGATAAATGTTTCTGGAAAG
*
44021187 ATGACATTTTGATATGATA
1 ATGACATTCTGATATGATA
44021206 GTTGTATATG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (34 bp):
ATGACATTCTGATATGATAAATGTTTCTGGAAAG
Found at i:44023506 original size:56 final size:56
Alignment explanation
Indices: 44023382--44023507 Score: 166
Period size: 56 Copynumber: 2.2 Consensus size: 56
44023372 TATGGTACTC
* *
44023382 AGTGTACGAAATATTGAGAATGGCACTCAGTGTACGGAATATTGAGAATGGCACTT
1 AGTGTACAAAATATTGAGAATGGCACTCAGTGTACGGAATATTGAGAATGACACTT
* * *
44023438 AGTGTACGAAATATTGAGAATGGCACTTAGTGTGC-GAGATATTGAGAATGACACTT
1 AGTGTACAAAATATTGAGAATGGCACTCAGTGTACGGA-ATATTGAGAATGACACTT
*
44023494 CA-TGTGCAAAATAT
1 -AGTGTACAAAATAT
44023508 CGAATGATTC
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
55 2 0.03
56 60 0.95
57 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (56 bp):
AGTGTACAAAATATTGAGAATGGCACTCAGTGTACGGAATATTGAGAATGACACTT
Found at i:44023507 original size:28 final size:28
Alignment explanation
Indices: 44023373--44023493 Score: 179
Period size: 28 Copynumber: 4.3 Consensus size: 28
44023363 GCAATCAAAT
* *
44023373 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
44023401 ATGGCACTCAGTGTACGGAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
44023429 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
44023457 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
44023485 ATGACACTT
1 ATGGCACTT
44023494 CATGTGCAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 86 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:44026410 original size:46 final size:46
Alignment explanation
Indices: 44026338--44026463 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
44026328 AACCCGCCCC
* * * *
44026338 TAAGTGAACTCGGACTCAACTTAACGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
*
44026384 TAAGTGAACTCGGACTCAACTCAACGAGTTCAAACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
44026430 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
44026464 TGCTCAACCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
Found at i:44026918 original size:30 final size:30
Alignment explanation
Indices: 44026884--44026943 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
44026874 ATTTAATACG
44026884 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
44026914 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
44026944 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:44032954 original size:28 final size:28
Alignment explanation
Indices: 44032914--44033006 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
44032904 GCAATCAAAT
*
44032914 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
44032942 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
44032970 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
44032998 ATGACACTT
1 ATGGCACTT
44033007 CGTTTGCAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:44033020 original size:28 final size:28
Alignment explanation
Indices: 44032914--44033020 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
44032904 GCAATCAAAT
* *
44032914 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
44032942 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
44032970 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* * * *
44032998 ATGACACTTCGTTTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
44033021 CGAATGATTC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:44033341 original size:40 final size:41
Alignment explanation
Indices: 44033193--44033340 Score: 129
Period size: 40 Copynumber: 3.6 Consensus size: 41
44033183 CGGGCTTTGG
* *
44033193 GCCTAGTAGGCTATAATGCCGGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * * *
44033236 GCCTAGCAAGCGAAATGCCGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* * ** * *
44033277 GTCTACCAGGCTTCATGCTGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
*
44033317 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
44033341 TTTGATAAAG
Statistics
Matches: 79, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
40 30 0.38
41 28 0.35
42 11 0.14
43 10 0.13
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:44036467 original size:38 final size:38
Alignment explanation
Indices: 44036386--44036538 Score: 180
Period size: 38 Copynumber: 4.0 Consensus size: 38
44036376 GAATCTAGTC
* * * * * *
44036386 ACCAGCACAAAGCCTACGAGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGAC-TTAA-CCCGGATATATT
* * *
44036426 ACCAGCACTAAGCTTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
*
44036464 ACCAGCACGAAGCCTGGGGGACTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
* *
44036502 ACTAGCACGAGGCCTGCGGGACTTAACCCGGATATAT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATAT
44036539 ATCGAGTGCT
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 77 0.79
39 4 0.04
40 17 0.17
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
Found at i:44038004 original size:45 final size:45
Alignment explanation
Indices: 44037934--44038036 Score: 188
Period size: 45 Copynumber: 2.3 Consensus size: 45
44037924 TGTTTTCTCC
*
44037934 CCTTTTTTTCTCTTACATTTGGCTTAAAAGAAAACAAAGATGAACA
1 CCTTGTTTTCT-TTACATTTGGCTTAAAAGAAAACAAAGATGAACA
44037980 CCTTGTTTTCTTTACATTTGGCTTAAAAGAAAACAAAGATGAACA
1 CCTTGTTTTCTTTACATTTGGCTTAAAAGAAAACAAAGATGAACA
44038025 CCTTGTTTTCTT
1 CCTTGTTTTCTT
44038037 CACCCATTTT
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
45 46 0.82
46 10 0.18
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (45 bp):
CCTTGTTTTCTTTACATTTGGCTTAAAAGAAAACAAAGATGAACA
Found at i:44040294 original size:33 final size:33
Alignment explanation
Indices: 44040252--44040317 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
44040242 ACAACTCGAC
*
44040252 CTTCTTGCATCAATACACAACCCAACCCATTTA
1 CTTCTTGCATCAATACACAAACCAACCCATTTA
44040285 CTTCTTGCATCAATACACAAACCAACCCATTTA
1 CTTCTTGCATCAATACACAAACCAACCCATTTA
44040318 AGGATGCATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.35, G:0.03, T:0.27
Consensus pattern (33 bp):
CTTCTTGCATCAATACACAAACCAACCCATTTA
Found at i:44042145 original size:25 final size:25
Alignment explanation
Indices: 44042116--44042163 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
44042106 TTATAATATG
* *
44042116 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
44042141 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
44042164 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:44042216 original size:11 final size:11
Alignment explanation
Indices: 44042200--44042262 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
44042190 ATTTTGATAA
44042200 ACATGATATGT
1 ACATGATATGT
44042211 ACATGATATGT
1 ACATGATATGT
*
44042222 --ATGATATGC
1 ACATGATATGT
* *
44042231 AGATGACATGT
1 ACATGATATGT
*
44042242 --ATGATATGC
1 ACATGATATGT
44042251 ACATGATATGT
1 ACATGATATGT
44042262 A
1 A
44042263 TGATATGCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
9 15 0.36
11 27 0.64
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.33
Consensus pattern (11 bp):
ACATGATATGT
Found at i:44042281 original size:20 final size:20
Alignment explanation
Indices: 44042202--44042273 Score: 117
Period size: 20 Copynumber: 3.6 Consensus size: 20
44042192 TTTGATAAAC
*
44042202 ATGATATGTACATGATATGT
1 ATGATATGCACATGATATGT
* *
44042222 ATGATATGCAGATGACATGT
1 ATGATATGCACATGATATGT
44042242 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
44042262 ATGATATGCACA
1 ATGATATGCACA
44042274 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:44042354 original size:24 final size:24
Alignment explanation
Indices: 44042326--44042400 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
44042316 GAGGAAGTGC
44042326 AAAAGGGCTTATGGCCCAGTTATT
1 AAAAGGGCTTATGGCCCAGTTATT
44042350 AAAAGGGCTTAT-GCCCTAGTTATT
1 AAAAGGGCTTATGGCCC-AGTTATT
*
44042374 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGGCCCAGTTATT
44042397 AAAA
1 AAAA
44042401 AACGGCTTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
23 22 0.47
24 25 0.53
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGGCCCAGTTATT
Found at i:44042421 original size:25 final size:25
Alignment explanation
Indices: 44042326--44042431 Score: 103
Period size: 24 Copynumber: 4.4 Consensus size: 25
44042316 GAGGAAGTGC
* * *
44042326 AAAAGGGCTTATGGCCCAGTTATT-
1 AAAAAGGCTTATGCCCCAGCTATTA
* * *
44042350 AAAAGGGCTTATGCCCTAGTTATT-
1 AAAAAGGCTTATGCCCCAGCTATTA
* *
44042374 -AAAGGGCTTATGCCCCAGTTATTA
1 AAAAAGGCTTATGCCCCAGCTATTA
44042398 AAAAACGGCTT-TGCCCCAGCTATTA
1 AAAAA-GGCTTATGCCCCAGCTATTA
44042423 AAAAAGGCT
1 AAAAAGGCT
44042432 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
23 22 0.30
24 26 0.35
25 21 0.28
26 5 0.07
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAAGGCTTATGCCCCAGCTATTA
Found at i:44042431 original size:24 final size:24
Alignment explanation
Indices: 44042326--44042425 Score: 132
Period size: 23 Copynumber: 4.2 Consensus size: 24
44042316 GAGGAAGTGC
*
44042326 AAAAGGGCTTATGGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44042350 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44042374 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
44042397 AAAAAACGGCTT-TGCCCCAGCTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
44042422 AAAA
1 AAAA
44042426 AAGGCTAGGC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
23 26 0.38
24 22 0.32
25 12 0.18
26 8 0.12
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:44042441 original size:25 final size:25
Alignment explanation
Indices: 44042385--44042441 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
44042375 AAGGGCTTAT
* **
44042385 GCCCCAGTTATTAAAAAACGGCTTT
1 GCCCCAGCTATTAAAAAACGGCTAG
44042410 GCCCCAGCTATTAAAAAA-GGCTAG
1 GCCCCAGCTATTAAAAAACGGCTAG
44042434 GCCTCCAG
1 GCC-CCAG
44042442 TTATATGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (25 bp):
GCCCCAGCTATTAAAAAACGGCTAG
Found at i:44042673 original size:31 final size:31
Alignment explanation
Indices: 44042638--44042701 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
44042628 CGTTTACCGT
44042638 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
44042669 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
44042700 AA
1 AA
44042702 TATGAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:44046752 original size:28 final size:28
Alignment explanation
Indices: 44046687--44046837 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
44046677 GAGATTGGCG
* * * *
44046687 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
44046716 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
44046744 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
44046772 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
44046800 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
44046827 CTGAGTGTGCG
1 CTAAGTGTGCG
44046838 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:44054973 original size:28 final size:28
Alignment explanation
Indices: 44054908--44055056 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
44054898 GAGATTGGCG
* * * *
44054908 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
44054937 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
44054965 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
44054993 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
44055021 CTAA--GTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
44055046 CTGAGTGTGCG
1 CTAAGTGTGCG
44055057 GACTTAATAT
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
25 17 0.15
26 7 0.06
27 5 0.05
28 67 0.60
29 15 0.14
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:44061885 original size:25 final size:25
Alignment explanation
Indices: 44061856--44061903 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
44061846 TTATAATATG
* * *
44061856 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
44061881 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
44061904 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:44061965 original size:20 final size:20
Alignment explanation
Indices: 44061940--44061982 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
44061930 ATTTTGATAA
44061940 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
44061960 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
44061980 ACA
1 ACA
44061983 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:44061990 original size:20 final size:20
Alignment explanation
Indices: 44061947--44061990 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
44061937 TAAACATGAT
* *
44061947 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
44061967 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
44061987 ATGT
1 ATGT
44061991 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:44062174 original size:25 final size:24
Alignment explanation
Indices: 44062035--44062178 Score: 204
Period size: 24 Copynumber: 6.0 Consensus size: 24
44062025 GAGGAAGTGC
44062035 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44062059 AAAAGGGCTTATGCCACAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44062083 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44062107 -AAACGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44062130 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
44062155 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
44062179 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
23 28 0.26
24 52 0.48
25 21 0.19
26 8 0.07
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:44062406 original size:31 final size:31
Alignment explanation
Indices: 44062371--44062434 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
44062361 CGTTTACTGT
44062371 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
44062402 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
44062433 AA
1 AA
44062435 TATGAAAAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:44066901 original size:38 final size:38
Alignment explanation
Indices: 44066820--44066972 Score: 171
Period size: 38 Copynumber: 4.0 Consensus size: 38
44066810 GAATCCAGTC
* * * *
44066820 ACCAGCACAAAGCCTACGGGACTTTAAGCTCGGATATAAT
1 ACCAGCACGAAGCCTACAGGA-TTTAA-CCCGGATATATT
* * *
44066860 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTACAGGATTTAACCCGGATATATT
* **
44066898 ACCAGCTCGAAGCCTACAGGATTTAACCCAAATATATT
1 ACCAGCACGAAGCCTACAGGATTTAACCCGGATATATT
* * *
44066936 ACTAGCACGAAGCCTGCAGGACTTAACCCGGATATAT
1 ACCAGCACGAAGCCTACAGGATTTAACCCGGATATAT
44066973 ATCGAGTGCT
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 73 0.75
39 5 0.05
40 19 0.20
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (38 bp):
ACCAGCACGAAGCCTACAGGATTTAACCCGGATATATT
Found at i:44075482 original size:24 final size:24
Alignment explanation
Indices: 44075373--44075473 Score: 175
Period size: 24 Copynumber: 4.2 Consensus size: 24
44075363 GAGAGGATCA
44075373 AGGAGTCGATAAGGGATAGGATTT
1 AGGAGTCGATAAGGGATAGGATTT
*
44075397 AGAAGTCGATAAGGGATAGGATTT
1 AGGAGTCGATAAGGGATAGGATTT
44075421 AGGAGTCGATAAGGGATAGGATTT
1 AGGAGTCGATAAGGGATAGGATTT
* *
44075445 AGGAGTTGATAAGGTATAGGATTT
1 AGGAGTCGATAAGGGATAGGATTT
44075469 AGGAG
1 AGGAG
44075474 CTAATAAGGA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.35, C:0.03, G:0.37, T:0.26
Consensus pattern (24 bp):
AGGAGTCGATAAGGGATAGGATTT
Found at i:44075491 original size:24 final size:24
Alignment explanation
Indices: 44075381--44075484 Score: 95
Period size: 24 Copynumber: 4.3 Consensus size: 24
44075371 CAAGGAGTCG
* * *
44075381 ATAAGGGATAGGATTTAGAAG-TCG
1 ATAAGGAATAGGATTTAGGAGCT-A
* *
44075405 ATAAGGGATAGGATTTAGGAG-TCG
1 ATAAGGAATAGGATTTAGGAGCT-A
* * *
44075429 ATAAGGGATAGGATTTAGGAGTTG
1 ATAAGGAATAGGATTTAGGAGCTA
*
44075453 ATAAGGTATAGGATTTAGGAGCTA
1 ATAAGGAATAGGATTTAGGAGCTA
44075477 ATAAGGAA
1 ATAAGGAA
44075485 GTGGATTCAG
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
24 73 0.99
25 1 0.01
ACGTcount: A:0.38, C:0.03, G:0.34, T:0.26
Consensus pattern (24 bp):
ATAAGGAATAGGATTTAGGAGCTA
Found at i:44077123 original size:26 final size:26
Alignment explanation
Indices: 44077094--44077192 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
44077084 AGGAAGCGTC
* *
44077094 CTGGTGGCTATGCCACATTTATTGAT
1 CTGGTGGCTCTGCCACATTTATTGTT
* *
44077120 CTGGTGGCTCTGCCACATATACCTGTT
1 CTGGTGGCTCTGCCACATTTA-TTGTT
*
44077147 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTAT-TGTT
* *
44077174 CTGGTGACTCTGTCACATT
1 CTGGTGGCTCTGCCACATT
44077193 ATCTATTTTG
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 19 0.31
27 42 0.69
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTTATTGTT
Found at i:44083000 original size:24 final size:24
Alignment explanation
Indices: 44082969--44083045 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
44082959 AAGTCTGTCA
44082969 GGAGAGGATTTAGGAG-TCGATAAG
1 GGAGAGGATTTAGGAGCT-GATAAG
*
44082993 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
44083017 GGAGAGGATTTAAGAGCTAATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
44083041 GGAGA
1 GGAGA
44083046 ACAGTGCTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 46 0.98
25 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.39, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:44085320 original size:79 final size:81
Alignment explanation
Indices: 44085184--44085368 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
44085174 TTGAATGATG
*
44085184 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
44085248 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
44085263 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
44085325 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
44085343 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44085369 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:44085382 original size:40 final size:40
Alignment explanation
Indices: 44085185--44085368 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
44085175 TGAATGATGT
* * * *
44085185 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
44085225 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
44085265 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44085303 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44085344 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
44085369 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:44085390 original size:79 final size:79
Alignment explanation
Indices: 44085237--44085401 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
44085227 GGACTAAGAT
* **
44085237 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
44085302 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
44085316 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
44085379 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
44085395 CCGAAGG
1 CCGAAGG
44085402 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:44093156 original size:38 final size:38
Alignment explanation
Indices: 44093059--44093236 Score: 175
Period size: 38 Copynumber: 4.7 Consensus size: 38
44093049 TTGAATGATG
* * *
44093059 TCCGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT
1 TCCGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAT
* *
44093097 ATCCGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAT
1 -TCCGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAT
* *
44093136 TCTGGCTAAG-CCCGAGAGGCATTTG-GCGAGTTACTAAA
1 TCCGGCTAAGTCCCGA-AGGCATTTGTGCGAGTTACT-AT
* *
44093174 TCCGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAT
1 TCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* * *
44093212 ACCGGGTATGTCCCGAAGGCATTTG
1 TCCGGCTAAGTCCCGAAGGCATTTG
44093237 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 17, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 13 0.11
38 56 0.49
39 38 0.33
40 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (38 bp):
TCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:44100922 original size:40 final size:40
Alignment explanation
Indices: 44100833--44101015 Score: 191
Period size: 39 Copynumber: 4.7 Consensus size: 40
44100823 TTGAATGATG
* * *
44100833 TCCGGGCTAAGTCCCGAA-GC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
44100871 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
44100912 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
44100951 TCCGGGTTAA-TCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
44100989 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
44101016 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 80 0.66
40 31 0.26
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:44104140 original size:38 final size:40
Alignment explanation
Indices: 44104069--44104251 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
44104059 GCTACTCGTT
44104069 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
*
44104109 CAATTGCCTTCGGGAC-TA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * *
44104147 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * * * * *
44104186 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAAC-TCGCA
* *
44104227 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
44104252 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
38 34 0.28
39 33 0.27
40 44 0.36
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:44106361 original size:27 final size:27
Alignment explanation
Indices: 44106321--44106431 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
44106311 AGGAAGCGTC
* *
44106321 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
44106348 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
44106375 CTGGTGGCT-TCGCCACAATTATCTGTT
1 CTGGTGGCTCT-GCCACATTTATCTGTT
* *
44106402 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
44106428 CTGG
1 CTGG
44106432 CAGCAATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 14 0.19
27 60 0.80
28 1 0.01
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:44106405 original size:54 final size:53
Alignment explanation
Indices: 44106321--44106431 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 53
44106311 AGGAAGCGTC
* *
44106321 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* *
44106375 CTGGTGGCT-TCGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTAT-GCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
44106428 CTGG
1 CTGG
44106432 CAGCAATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
53 13 0.25
54 39 0.75
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:44114604 original size:28 final size:28
Alignment explanation
Indices: 44114541--44114691 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
44114531 ATACTAAGTC
*
44114541 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
44114568 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
44114596 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
44114624 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
44114652 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
44114681 CGCACACTTAG
1 CGCACACTTAG
44114692 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:44117075 original size:20 final size:20
Alignment explanation
Indices: 44117013--44117075 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
44117003 AAACCCTAAT
44117013 ATATGGTATGATATGCACATG
1 ATAT-GTATGATATGCACATG
*
44117034 ACATGTATGATATGCACATG
1 ATATGTATGATATGCACATG
*
44117054 ATATGTATGAAATGCACATG
1 ATATGTATGATATGCACATG
44117074 AT
1 AT
44117076 CAATTCATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
20 36 0.92
21 3 0.08
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ATATGTATGATATGCACATG
Found at i:44117161 original size:26 final size:26
Alignment explanation
Indices: 44117125--44117280 Score: 219
Period size: 26 Copynumber: 6.1 Consensus size: 26
44117115 GAGGAAGTGC
44117125 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
44117151 AAAAGGGCTTATGCCCTAGTTTGTTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
44117177 AAAAGGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
44117203 AAAAGGGCTTATGCCCCAGTTTATGG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
44117229 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
44117254 AAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
44117278 AAA
1 AAA
44117281 GAGGCTAGGC
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
24 7 0.06
25 31 0.27
26 78 0.67
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:44119655 original size:41 final size:41
Alignment explanation
Indices: 44119606--44119706 Score: 148
Period size: 41 Copynumber: 2.5 Consensus size: 41
44119596 ATCAACGGGC
* *
44119606 CTACTCACATAAGCTGTCAGTCAAGACGTAGCTACATGATG
1 CTACTCACACAAGCTGTCAGTCAAGACGTAGCTACACGATG
** * *
44119647 CTGTTCACACAAGCTGTCAGTCAAGATGTAGCTACACGGTG
1 CTACTCACACAAGCTGTCAGTCAAGACGTAGCTACACGATG
44119688 CTACTCACACAAGCTGTCA
1 CTACTCACACAAGCTGTCA
44119707 AGTAACCAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (41 bp):
CTACTCACACAAGCTGTCAGTCAAGACGTAGCTACACGATG
Found at i:44123823 original size:27 final size:28
Alignment explanation
Indices: 44123749--44123827 Score: 90
Period size: 27 Copynumber: 2.8 Consensus size: 28
44123739 CCTCACTGCA
44123749 ATCTGGTGGCTTCGCCACATATATATCCGT
1 ATCTGGTGGCTTCGCCACA-ATATAT-CGT
* *
44123779 -TCTGGTGGCCTAGCCACAATATAT-GT
1 ATCTGGTGGCTTCGCCACAATATATCGT
* *
44123805 ATCTGGTGACTTCGTCACAATAT
1 ATCTGGTGGCTTCGCCACAATAT
44123828 CTGGCAGCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
26 2 0.05
27 18 0.43
28 6 0.14
29 16 0.38
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (28 bp):
ATCTGGTGGCTTCGCCACAATATATCGT
Found at i:44130712 original size:27 final size:26
Alignment explanation
Indices: 44130673--44130732 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
44130663 ACATATATAT
* *
44130673 ATATCCGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
44130699 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
44130726 ATATCTG
1 ATATCTG
44130733 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:44141799 original size:15 final size:15
Alignment explanation
Indices: 44141779--44141809 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
44141769 TACACACCTT
44141779 TTCGTGAAACCGCAC
1 TTCGTGAAACCGCAC
44141794 TTCGTGAAACCGCAC
1 TTCGTGAAACCGCAC
44141809 T
1 T
44141810 CAAATCCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (15 bp):
TTCGTGAAACCGCAC
Found at i:44143547 original size:93 final size:93
Alignment explanation
Indices: 44143434--44143605 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44143424 CGCCCATAAG
* *
44143434 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
44143499 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
44143527 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
44143592 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
44143606 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:44143602 original size:46 final size:46
Alignment explanation
Indices: 44143427--44143602 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
44143417 TGTAACCCGC
* * *
44143427 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
44143473 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
44143523 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
44143566 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
44143603 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:44151050 original size:47 final size:49
Alignment explanation
Indices: 44150974--44151106 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 49
44150964 ATGTAACCCG
44150974 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
44151024 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
44151067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
44151107 TCAACATCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.40
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:44155762 original size:30 final size:30
Alignment explanation
Indices: 44155728--44155788 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
44155718 TTCCCGAGCC
*
44155728 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * *
44155758 TAGGGGAAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
44155788 T
1 T
44155789 TAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:44156603 original size:64 final size:64
Alignment explanation
Indices: 44156498--44156705 Score: 195
Period size: 67 Copynumber: 3.2 Consensus size: 64
44156488 CATCATGTGT
*
44156498 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GA-GTTAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
44156563 TAG
62 TAG
* * * * * * *
44156566 ACAAGAGAGCTACGGGTTATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGTTATATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
44156631 AG
63 AG
* * * * * * *
44156633 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGTTATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
44156695 TACAAGAGAGC
1 -ACAAGAGAGC
44156706 CGAACTATAT
Statistics
Matches: 115, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 21 0.18
65 12 0.10
66 18 0.16
67 31 0.27
68 13 0.11
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGTTATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:44165531 original size:27 final size:27
Alignment explanation
Indices: 44165474--44165584 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
44165464 CGCATGGCTG
* * *
44165474 CCAGAACAGATAA-TGTGACAGTGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
44165500 TCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
44165527 CCAGAACAGA-AATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
** *
44165554 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
44165581 CCAG
1 CCAG
44165585 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 54 0.75
28 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Done.